RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy195
(691 letters)
>2xut_A Proton/peptide symporter family protein; transport protein,
membrane protein, major facilitator super transporter;
3.62A {Shewanella oneidensis}
Length = 524
Score = 325 bits (836), Expect = e-104
Identities = 126/424 (29%), Positives = 200/424 (47%), Gaps = 66/424 (15%)
Query: 10 MLSPSEQPKYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLY------DEKTATVMF 63
M SP + PK+P+ + +I+ +E CERF +YGMR +L+ ++ LL A +F
Sbjct: 1 MNSPVDAPKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVF 60
Query: 64 HIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLV 123
H + YFFPL GG IAD + GK+ TI+ LS++Y G+ L +
Sbjct: 61 HSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSV------QGFYT 114
Query: 124 GLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRH 183
GL LIA+G+GGIKP VSSF GDQF + +K F +FYF+IN GS ++ P+
Sbjct: 115 GLFLIALGSGGIKPLVSSFMGDQF-DQSNKSLAQKAFDMFYFTINFGSFFASLSMPL--- 170
Query: 184 DMQCFGQEACFPLAFGVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQCTIRAIKNK 243
+ +AFG+P +LMF+A + F +G+ Y P+ A+ K
Sbjct: 171 ----LLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTK 226
Query: 244 FKTKKS----------------------------------------ERTKEHWLDYANDK 263
+ K + L+ A
Sbjct: 227 VEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKS 286
Query: 264 YDQGTIEDIKTLLRILLLFVPLPIFWALFDQQGSRWTFQANRMDGRVFGTSLEIKPDQMQ 323
+ ++ ++++LRIL+LF + FW+LFDQ+ S W QAN M + +P MQ
Sbjct: 287 HPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQW-----FEPAMMQ 341
Query: 324 LINPLLILTFIPLFQYVIYPLVDKCGLN-RPLRKLTVGGLLAALSFVVSALVEFNIRAHS 382
+NPLL++ IP +V+YP +++ G+ LRK+ G + LS++V ++ + S
Sbjct: 342 ALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGS 401
Query: 383 QIAP 386
++
Sbjct: 402 ALSI 405
Score = 90.9 bits (226), Expect = 3e-19
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 12/119 (10%)
Query: 583 DSSNKVSMLWLFPQYIIITAAEIMFSITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLIV 642
D + +S+ W Y ++T E++ S TG EFA++QAP +MK + + W L+ GNL V
Sbjct: 398 DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWV 457
Query: 643 AIVAEA------------KIFENQAYEFLLFASLMVVDMGVFALLAMRYKYVEEDEDED 689
+ + A++ FA ++ VFAL A Y+ +
Sbjct: 458 LLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQMQDHYRQAT 516
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide
transport, major facilitator SUPE transporter, MFS;
3.30A {Streptococcus thermophilus}
Length = 491
Score = 163 bits (415), Expect = 7e-44
Identities = 84/416 (20%), Positives = 146/416 (35%), Gaps = 90/416 (21%)
Query: 20 PKAVFFIVINEFCERFCYYGMRTVLSLYMHLV-----LLYDEKTATVMFHIWTGLCYFFP 74
P + + + E ERF YYGMR +L YM + L TA + I+ + Y
Sbjct: 12 PLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSG 71
Query: 75 LFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGG 134
GG +AD +G + ++ + G+++L + + ++LI +GTG
Sbjct: 72 TIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL-------PFGASALFGSIILIIIGTGF 124
Query: 135 IKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACF 194
+KP VS+ G + E + + FS+F F IN G+ I+ I + G F
Sbjct: 125 LKPNVSTLVGTLY--DEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA---AGYHVAF 179
Query: 195 PLA----------------------------------------FGVPALLMFLAIIVFII 214
LA A+ F+AIIV +
Sbjct: 180 SLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMN 239
Query: 215 GKPMYKINKPKGNVALEVFQCTI---RAIKNKFKTKKSERTKEHWLDYANDKYDQGTIED 271
+ + + + + + K +E +
Sbjct: 240 LVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLR------------------ 281
Query: 272 IKTLLRILLLFVPLPIFWALFDQQGSRWTFQANRM-DGRVFGTSLEIKPDQMQLINPLLI 330
++ + LF+ +FWA+ +Q A D F S Q +NPL I
Sbjct: 282 ---VVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVS------WFQSLNPLFI 332
Query: 331 LTFIPLFQYVIYPLVDKCGLNRPLRKLTVGGLLAALSFVVSALVEFNIRAHSQIAP 386
+ + P F ++ + P K VG + A LSF++ A+ +++P
Sbjct: 333 MLYTPFFAWLWTAWKKN-QPSSP-TKFAVGLMFAGLSFLLMAIPGALYGTSGKVSP 386
Score = 60.5 bits (147), Expect = 9e-10
Identities = 23/94 (24%), Positives = 42/94 (44%)
Query: 583 DSSNKVSMLWLFPQYIIITAAEIMFSITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLIV 642
+S KVS LWL + ++ E++ S G AP + S + + W L+++ G+ +
Sbjct: 379 GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALN 438
Query: 643 AIVAEAKIFENQAYEFLLFASLMVVDMGVFALLA 676
A + +++ F F VV V L+
Sbjct: 439 AQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLS 472
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.8 bits (136), Expect = 2e-08
Identities = 45/353 (12%), Positives = 97/353 (27%), Gaps = 96/353 (27%)
Query: 391 FSLRIYNSMDCDFVFHSPLKNERVLRAMDMLALNNIPINGTQHFAALFEPSTSCPY-VLN 449
I + + D + S LR L Q F E Y L
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK--QEEMVQKF---VEEVLRINYKFLM 95
Query: 450 KTFQSSVLGADGKITEYYLIRDEKQ-------QAHLKRLGEFHDLRNINSSLKMQ---IL 499
++ Y RD + ++ RL + LR L+ ++
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 500 YGSELQGKRITLESDDGFYQDIDLPTGACYTEYIE-GIPAGVY--EVRSENKVLKSNMEL 556
G GK + C + ++ + ++ +++ N ++ +E+
Sbjct: 156 DGVLGSGKTW-------------VALDVCLSYKVQCKMDFKIFWLNLKNCNSP-ETVLEM 201
Query: 557 QDDNVYVLNLNTEASPEH-RTARLLKDDSSNKVSMLWLFPQY----II---ITAAEIMFS 608
+Y ++ N + +H +L ++ L Y ++ + A+
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA--- 258
Query: 609 ITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLI----------VAIVAEAKIF-ENQAYE 657
F + LLTT F + +++ + ++
Sbjct: 259 WNAFNL---SCKI----------LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 658 FLLFASLMVVDMGVFAL-----------LAM-------------RYKYVEEDE 686
L +D L L++ +K+V D+
Sbjct: 306 --LLLK--YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Score = 49.1 bits (116), Expect = 5e-06
Identities = 78/568 (13%), Positives = 155/568 (27%), Gaps = 167/568 (29%)
Query: 16 QPKYPKAVFFIVINEFCERF-CYY---GMRTVLS--LYMHLVLLYDEKTATVMFHIWTGL 69
Q +Y K + + + F + F C +++LS H+++ D + T+ WT L
Sbjct: 15 QYQY-KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL-FWT-L 71
Query: 70 C-------YFFPLFGGIIADTYLGKFLTIVI---------LSIVYLGG-NVLLT-VTAID 111
F ++ Y KFL I ++ +Y+ + L
Sbjct: 72 LSKQEEMVQKF--VEEVLRINY--KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 112 PLNIP--KRTFTLVGLLL-------IAV-GTGGI-KPCVSSFGGDQFIVPEQSAQLEKFF 160
N+ + L LL + + G G K V+ K
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL----------DVCLSYKVQ 177
Query: 161 SLFYFSINAGSLISTF-ITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFIIGKPMY 219
F I F + +L L +++ I
Sbjct: 178 CKMDFKI--------FWLN---------LKNCNS------PETVLEMLQKLLYQIDPNWT 214
Query: 220 KINKPKGNVALEVFQCTIRAIKNKFKTKKSERTKEHWLDYANDKYDQGTIE--DIKTLLR 277
+ N+ L I +I+ + + + E+ L + + ++ +
Sbjct: 215 SRSDHSSNIKLR-----IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC--K 267
Query: 278 ILLLFVPLPIFWAL-------FDQQGSRWTFQANRMDGRVFGTSLEIK----PDQMQLIN 326
ILL + L T + + + L+ + P ++ N
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS-LLLKYLDCRPQDLPREVLTTN 326
Query: 327 PLLILTF-------IPLFQYVIYPLVDKCGLNRPLRKLTVGGLLAALSFVVSALVEFNIR 379
P + + + + DK L + ++ L R
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDK--------------LTTIIESSLNVLEPAEYR 372
Query: 380 AHSQIAPQDRHFSLRIYNSMDCDFVFHSPLKNERVLRAMDMLALNNIPINGTQHFAAL-F 438
++ + VF +IP T + + F
Sbjct: 373 KM--------------FDRL---SVF-----PPSA----------HIP---TILLSLIWF 397
Query: 439 EPSTSCP-YVLNKTFQSSVLGADGKITEYY---LIRDEKQQAHLKRLGEFHDLRNINSSL 494
+ S V+NK + S++ K + + + K L+ H R+I
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV--KLENEYALH--RSIVDHY 453
Query: 495 KMQILYGSELQGKRITLESDDG-FYQDI 521
+ + + D FY I
Sbjct: 454 NIPKTF----DSDDLIPPYLDQYFYSHI 477
Score = 45.6 bits (107), Expect = 6e-05
Identities = 89/578 (15%), Positives = 170/578 (29%), Gaps = 201/578 (34%)
Query: 230 LEVFQCTIRAIKNKFKTKKSERTKEHWLDYANDKYDQGTIEDI----KTLLRILLLFVPL 285
L VF+ A + F K + D + I+ I + L LF
Sbjct: 22 LSVFE---DAFVDNFDCKDVQ-------DMPKSILSKEEIDHIIMSKDAVSGTLRLF--- 68
Query: 286 PIFWALFDQQGSRWTFQANRMDGRVFGTSLEIKPDQMQLINPLLILTFIPLFQYVIY--- 342
W L +Q M + L + L++P+ P +Y
Sbjct: 69 ---WTLLSKQ--------EEMVQKFVEEVLR--INYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 343 --------PLVDKCGLNRP-----LRK----------LTVGGL-------LAA---LSFV 369
+ K ++R LR+ + + G+ +A LS+
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 370 VSALVEFNI-------------------RAHSQIAPQ-----DRHFSLRI-YNSMDC--- 401
V ++F I + QI P D ++++ +S+
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 402 DFVFHSPLKN----------ERVLRAMD----MLAL-------NNIPINGTQHFA----- 435
+ P +N + A + +L + + T H +
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 436 ---------ALFE----------PSTSC---PYVLNKTFQSSVLGA---DGKIT-EYYLI 469
+L P P L S++ DG T + +
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL------SIIAESIRDGLATWDNW-- 347
Query: 470 RDEKQQAHLKRLGEFHDLRNINSSLKMQILYGSELQG--KRITLESDDGFYQDIDLPTGA 527
+ + +L I SSL +L +E + R+++ F +PT
Sbjct: 348 ----KHVNCDKLTTI-----IESSLN--VLEPAEYRKMFDRLSV-----FPPSAHIPTIL 391
Query: 528 CYTEYIEGIPAGVYEVRSENKVLKSNMELQDDN-----VYVLNLNTEASPE-----HRTA 577
+ + I + V V NK+ K ++ + + + L + E HR+
Sbjct: 392 LSLIWFDVIKSDVMVV--VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449
Query: 578 ----RLLKDDSSNKVSMLWL---FPQYI-----IITAAE--IMFSITGFEFAFTQAPVSM 623
+ K S+ + +L F +I I E +F + +F F + +
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI-- 507
Query: 624 KSAVSACWLLTTAFGNLIVAIVAEAKIFENQA-YEFLL 660
+ +A + L + I +N YE L+
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV 545
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.7 bits (126), Expect = 4e-07
Identities = 76/516 (14%), Positives = 155/516 (30%), Gaps = 187/516 (36%)
Query: 76 FGGIIAD----TYLGKFLTIVILSIV-----YLGGN----VLLTVTAIDPLNIPK----- 117
F G ++ + +G+F ++ L + YL GN + + + + K
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI 123
Query: 118 RTF----TLVG---------LLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFF---- 160
+ + + L AVG G + V+ FGG Q + +F
Sbjct: 124 KNYITARIMAKRPFDKKSNSALFRAVGEGNAQ-LVAIFGG-------QGN-TDDYFEELR 174
Query: 161 SLF--YFSINAGSLISTF---ITPIFRHDMQCFGQEACFPLAFGVPALLM---------F 206
L+ Y + G LI ++ + R + E F + L +
Sbjct: 175 DLYQTYHVL-VGDLIKFSAETLSELIRTTLDA---EKVFTQGLNILEWLENPSNTPDKDY 230
Query: 207 LAIIVF---IIGKPMYKINKPKGN--VALEVFQCTIRAIKNKFK--TKKSE--------- 250
L I +IG + ++ + V ++ T +++ K T S+
Sbjct: 231 LLSIPISCPLIG--VIQL----AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA 284
Query: 251 --RTKEHWLDYANDKYDQGTIEDIKTLLRILLLFVPLPIFWALFDQQGSRWTFQANRMDG 308
+ E + + + +L F+ G R
Sbjct: 285 ETDSWESFFVSV------------RKAITVL--------FF-----IGVR--CY------ 311
Query: 309 RVFGTSLEIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLNRPLRKLTVGGLLAALSF 368
+ + + P ++ L + G+ P+ L++ L
Sbjct: 312 EAYPNT-SLPPSILE------------------DSLENNEGVPSPM--LSISNL--TQEQ 348
Query: 369 VVSALVEFNIRAHSQIAPQDRHFSLRIYNSMDCDFV----------FHSPLKNERVLRAM 418
V + + N +H P + + + N V + L+ + +
Sbjct: 349 VQDYVNKTN--SH---LPAGKQVEISLVNGAKN-LVVSGPPQSLYGLNLTLRKAKAPSGL 402
Query: 419 DMLALNNIPINGTQ---HFAALFEPSTSCPYVLNKTFQSSVL-GADGKITEYYLIRDEKQ 474
D + IP ++ F+ F P + P F S +L A I + + +
Sbjct: 403 DQ---SRIP--FSERKLKFSNRFLP-VASP------FHSHLLVPASDLINKDLVKNNVSF 450
Query: 475 QAHLKRLGE--FH-----DLR----NINSSLKMQIL 499
A K + + DLR +I+ + I+
Sbjct: 451 NA--KDIQIPVYDTFDGSDLRVLSGSISERIVDCII 484
Score = 46.2 bits (109), Expect = 4e-05
Identities = 56/407 (13%), Positives = 112/407 (27%), Gaps = 135/407 (33%)
Query: 240 IKNKFKTKKSERTKEHWLD---------------YANDKYDQGTIEDIKTLLRILLLFVP 284
++ +F E T+ D Y + + + +L + L
Sbjct: 33 LQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCL---- 88
Query: 285 LPIFWALFDQQGSRWTFQANRMDGR---VFGTSLEIKPDQMQLINPLLILTFIPLFQYVI 341
F+ ++G L + D + LI + I
Sbjct: 89 --------------TEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY---ITARI 131
Query: 342 YPLVDKCGLNRPLRKLTVGGLLAALSFVVSALVEFNIRAHSQIAPQ-------DRHFS-L 393
RP K + L A+ ++Q+ D +F L
Sbjct: 132 M-------AKRPFDKKSNSALFRAVG-----------EGNAQLVAIFGGQGNTDDYFEEL 173
Query: 394 R----IYNSMDCDFVF----------HSPLKNERVL-RAMDMLA-LNN------------ 425
R Y+ + D + + L E+V + +++L L N
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS 233
Query: 426 ----IPING-TQ--HFAALFEPSTSCPYVLNKTFQSSVLGADGKITEYYLIRDEKQQAHL 478
P+ G Q H+ + P L + + + G +T + A
Sbjct: 234 IPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI-------AET 286
Query: 479 KRLGEFHDLRNINSSLKMQILY--GSELQGK--RITLESDDGFYQDIDLPTGACYTEYIE 534
F + + +L+ G +L +D E E
Sbjct: 287 DSWESFFV----SVRKAITVLFFIGVRCYEAYPNTSLPPS--ILED--------SLENNE 332
Query: 535 GIPA------GVYEVRSENKVLKSNMEL-QDDNVYVLNLNTEASPEH 574
G+P+ + + + ++ V K+N L V + +N ++
Sbjct: 333 GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN---GAKN 376
Score = 40.8 bits (95), Expect = 0.002
Identities = 57/294 (19%), Positives = 89/294 (30%), Gaps = 107/294 (36%)
Query: 39 GMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVY 98
GM + LY KT+ +W AD + IL IV
Sbjct: 1630 GM--GMDLY---------KTSKAAQDVWNR------------ADNHFKDTYGFSILDIV- 1665
Query: 99 LGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGG--IKPCVSSFGGDQFIVPEQSAQL 156
+N P G G G I+ S+ + + +
Sbjct: 1666 --------------INNPVNLTIHFG------GEKGKRIRENYSAMIFETI--VDGKLKT 1703
Query: 157 EKFF-------SLFYFSINAGSLISTFIT-P--------IFRHDMQCFG---QEACF--- 194
EK F + + F G L +T T P F D++ G +A F
Sbjct: 1704 EKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFE-DLKSKGLIPADATFAGH 1762
Query: 195 PL----AFGVPALLMFL--AI-IVFIIGK------P----------MYKINKPKGNVALE 231
L A A +M + + +VF G P M IN P G VA
Sbjct: 1763 SLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAIN-P-GRVAAS 1820
Query: 232 VFQCTIRAIKNKFKTKKSERTKEHWLDYAND--KYDQ----GTIEDIKTLLRIL 279
Q ++ + + +RT ++ N + Q G + + T+ +L
Sbjct: 1821 FSQEALQYVVERV----GKRTGWL-VEIVNYNVENQQYVAAGDLRALDTVTNVL 1869
Score = 33.9 bits (77), Expect = 0.23
Identities = 28/147 (19%), Positives = 47/147 (31%), Gaps = 56/147 (38%)
Query: 362 LLAALSFVVSALVEFNIRAHSQIAPQDR--HF----SLRI---YNSMDCDFVFHSPLKNE 412
F + +V N P + HF RI Y++M + + LK E
Sbjct: 1653 FKDTYGFSILDIVINN--------PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTE 1704
Query: 413 RVLRAMDMLALNNIPINGTQHFAALFEPSTSCPY-----VLNKT-F-QSSVLGADGKITE 465
++ F + E STS + +L+ T F Q ++ + E
Sbjct: 1705 KI-------------------FKEINEHSTSYTFRSEKGLLSATQFTQPALT-----LME 1740
Query: 466 YYLIRDEKQQAHLKR--------LGEF 484
D K + + LGE+
Sbjct: 1741 KAAFEDLKSKGLIPADATFAGHSLGEY 1767
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 37.2 bits (85), Expect = 0.005
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 23/47 (48%)
Query: 472 EKQQAHLKRLGEFHDLRNINSSLKMQILYGSE------LQGKRITLE 512
EKQ LK+L +SLK LY + ++ T+E
Sbjct: 18 EKQA--LKKL---------QASLK---LYADDSAPALAIKA---TME 47
>2z8l_A Exotoxin 3; OB fold, B-grAsp, sugar binding protein; HET: SIA NAG
GAL FUC; 1.65A {Staphylococcus aureus} SCOP: b.40.2.2
d.15.6.1 PDB: 2r61_A* 1m4v_A
Length = 208
Score = 28.6 bits (63), Expect = 4.9
Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 4/79 (5%)
Query: 445 PYVLNKTFQSSVLGADGKITEYYLIRDEKQQAHLKRLGEFHDLRNINSSLKMQILYGSEL 504
Y+ F G T K++ LK L D + ++ LY
Sbjct: 108 DYLNAPKFVIKKEVDAGVYTHVKRHYIYKEEVSLKEL----DFKLRQYLIQNFDLYKKFP 163
Query: 505 QGKRITLESDDGFYQDIDL 523
+ +I + DG Y +L
Sbjct: 164 KDSKIKVIMKDGGYYTFEL 182
>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid,
acyltransferase, mycobacterium tuberculosis structural
proteomics project; HET: DKA; 1.08A {Mycobacterium
tuberculosis} SCOP: d.104.1.3
Length = 232
Score = 28.8 bits (65), Expect = 5.4
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 7/45 (15%)
Query: 338 QYVIYPLVDKCGLNRPLRKLTVGGLLAAL-SFVVSALVEFNIRAH 381
Q V YP++ L P L V + L ++ + + A
Sbjct: 89 QLVGYPIIG---LAEP---LDVVNYVRRLEESLIQVCADLGLHAG 127
>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus
thermophilus} PDB: 2qht_A 2qhu_A 2qhv_A
Length = 237
Score = 28.1 bits (63), Expect = 9.3
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 338 QYVIYPLVDKCGLNRPLRKLTVGGLLAALSFVVSALVEFNIRAH 381
Q V YP+ + R +R+ + + A +V + I A+
Sbjct: 106 QLVGYPIFP---VGREVRRF-LRQIEEA---IVRVAAGYGISAY 142
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.141 0.422
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,441,625
Number of extensions: 634881
Number of successful extensions: 1310
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1280
Number of HSP's successfully gapped: 21
Length of query: 691
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 591
Effective length of database: 3,909,693
Effective search space: 2310628563
Effective search space used: 2310628563
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (27.4 bits)