RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy195
         (691 letters)



>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
           562]}
          Length = 417

 Score = 35.1 bits (79), Expect = 0.028
 Identities = 23/187 (12%), Positives = 49/187 (26%), Gaps = 6/187 (3%)

Query: 21  KAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGII 80
              +   +  F   F          +++H +    +    ++F   +     F    G++
Sbjct: 7   TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLL 66

Query: 81  ADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVS 140
           +D   G    ++ +    L       +    PL         + +  I  G        +
Sbjct: 67  SDKL-GLRKYLLWIITGMLVMFAPFFIFIFGPLL-----QYNILVGSIVGGIYLGFCFNA 120

Query: 141 SFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAFGV 200
                +  + + S +    F         G  +   I  I       F        A  +
Sbjct: 121 GAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALIL 180

Query: 201 PALLMFL 207
             LL F 
Sbjct: 181 AVLLFFA 187


>d1n7oa1 a.102.3.2 (A:170-540) Hyaluronate lyase {Streptococcus
           pneumoniae [TaxId: 1313]}
          Length = 371

 Score = 31.4 bits (71), Expect = 0.32
 Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 264 YDQGTIEDIKTLLRILLLFVPLPIFWALFDQQGSRWTFQANRMD 307
            +  + E+IK    ++  FVP P  +        +     N +D
Sbjct: 141 KEYFSDEEIKKYTDVIEKFVPDPEHFRKTTDNPVKAL-GGNLVD 183


>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 31.2 bits (69), Expect = 0.50
 Identities = 38/372 (10%), Positives = 95/372 (25%), Gaps = 40/372 (10%)

Query: 4   APVSSYMLSPSEQPKYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLV--LLYDEKTATV 61
           AP  + + +    P Y +  + I +  F     YY +R   +L M  +    +       
Sbjct: 4   APHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGF 63

Query: 62  MFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFT 121
                +    F     G ++D    +        +    G +L     +    +P  T +
Sbjct: 64  ALSGISIAYGFSKFIMGSVSDRSNPR--------VFLPAGLILAAAVMLFMGFVPWATSS 115

Query: 122 LVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIF 181
           +  + ++    G                          +         G  +  + +   
Sbjct: 116 IAVMFVLLFLCG--------------------------WFQGMGWPPCGRTMVHWWSQKE 149

Query: 182 RHDMQCFGQEACFPLAFGVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQCTIRAIK 241
           R  +          +  G+P LL  L +  F        +      +        +R   
Sbjct: 150 RGGIVSV-WNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMR--- 205

Query: 242 NKFKTKKSERTKEHWLDYANDKYDQGTIEDIKTLLRILLLFVPLPIFWALFDQQGSRWTF 301
           +  ++      +E+  DY +D  ++   E     + +  +     +++            
Sbjct: 206 DTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLR 265

Query: 302 QANRMDGRVFGTSLEIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLNRPLRKLTVGG 361
                    +   ++            L          +   + DK              
Sbjct: 266 YGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFM 325

Query: 362 LLAALSFVVSAL 373
            L  ++ +V  +
Sbjct: 326 TLVTIATIVYWM 337


>d1f1sa1 a.102.3.2 (A:249-619) Hyaluronate lyase {Streptococcus
           agalactiae [TaxId: 1311]}
          Length = 371

 Score = 28.7 bits (64), Expect = 2.5
 Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 1/44 (2%)

Query: 264 YDQGTIEDIKTLLRILLLFVPLPIFWALFDQQGSRWTFQANRMD 307
            +  T  +IKT    +  FVP   ++        +     N +D
Sbjct: 142 NNYFTDAEIKTYTDPIEHFVPDAEYFRKTLVNPFKAL-GGNLVD 184


>d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella
           flexneri [TaxId: 623]}
          Length = 247

 Score = 27.2 bits (60), Expect = 5.9
 Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 3/46 (6%)

Query: 357 LTVGGLLAALSFVVSALVEFNIRAHSQIAPQDRHFSLRIYNSMDCD 402
              GGL  +L  + S      I  H  I P+   F    Y+  +  
Sbjct: 30  PKEGGLTPSLGVLKSVRQRVTIPVHPIIRPRGGDF---CYSDGEFA 72


>d1rwha1 a.102.3.2 (A:4-372) Chondroitinase AC {Arthrobacter
           aurescens [TaxId: 43663]}
          Length = 369

 Score = 27.2 bits (60), Expect = 6.4
 Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 1/44 (2%)

Query: 264 YDQGTIEDIKTLLRILLLFVPLPIFWALFDQQGSRWTFQANRMD 307
           + + +  +       +  FVP P       +        ANR+D
Sbjct: 141 HAELSAAERTAYCAAIDHFVPDPWLQFPPKRGKITSV-GANRVD 183


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.141    0.422 

Gapped
Lambda     K      H
   0.267   0.0629    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,535,658
Number of extensions: 118975
Number of successful extensions: 335
Number of sequences better than 10.0: 1
Number of HSP's gapped: 335
Number of HSP's successfully gapped: 8
Length of query: 691
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 599
Effective length of database: 1,144,436
Effective search space: 685517164
Effective search space used: 685517164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.6 bits)