BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1953
(379 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O54941|SMCE1_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily E member 1 OS=Mus musculus
GN=Smarce1 PE=1 SV=1
Length = 411
Score = 177 bits (450), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 93/167 (55%), Positives = 126/167 (75%), Gaps = 5/167 (2%)
Query: 39 EYEKNLKAYHNSPQYLAYMAAKAKGKQAQQAAEEREAQAQGFSGKNADRRIDIQPAEDED 98
EY +++KAYHNSP YLAY+ AK++ +AA E E++ + + + + IQPAED D
Sbjct: 125 EYNESMKAYHNSPAYLAYINAKSRA----EAALEEESRQRQSRMEKGEPYMSIQPAEDPD 180
Query: 99 EQEDGYSVKHVAYARYLRNHRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKK 158
+ +DG+S+KH A AR+ RNHRLI+EI S+SVVPDVRSVVTT RMQVLKRQVQSL +HQ+K
Sbjct: 181 DYDDGFSMKHTATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQRK 240
Query: 159 LEAELQQIEEKFEAKKRKFVESSEQFQEELKKP-GMGPEGYLNRLSA 204
LEAEL QIEE+ + KKRKF+ES++ F ELK+ G+ E + +++A
Sbjct: 241 LEAELLQIEERHQEKKRKFLESTDSFNNELKRLCGLKVEVDMEKIAA 287
>sp|Q969G3|SMCE1_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily E member 1 OS=Homo sapiens
GN=SMARCE1 PE=1 SV=2
Length = 411
Score = 177 bits (450), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 93/167 (55%), Positives = 126/167 (75%), Gaps = 5/167 (2%)
Query: 39 EYEKNLKAYHNSPQYLAYMAAKAKGKQAQQAAEEREAQAQGFSGKNADRRIDIQPAEDED 98
EY +++KAYHNSP YLAY+ AK++ +AA E E++ + + + + IQPAED D
Sbjct: 125 EYNESMKAYHNSPAYLAYINAKSRA----EAALEEESRQRQSRMEKGEPYMSIQPAEDPD 180
Query: 99 EQEDGYSVKHVAYARYLRNHRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKK 158
+ +DG+S+KH A AR+ RNHRLI+EI S+SVVPDVRSVVTT RMQVLKRQVQSL +HQ+K
Sbjct: 181 DYDDGFSMKHTATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQRK 240
Query: 159 LEAELQQIEEKFEAKKRKFVESSEQFQEELKKP-GMGPEGYLNRLSA 204
LEAEL QIEE+ + KKRKF+ES++ F ELK+ G+ E + +++A
Sbjct: 241 LEAELLQIEERHQEKKRKFLESTDSFNNELKRLCGLKVEVDMEKIAA 287
>sp|Q56A18|SMCE1_RAT SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily E member 1 OS=Rattus norvegicus
GN=Smarce1 PE=1 SV=1
Length = 376
Score = 177 bits (449), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 93/167 (55%), Positives = 126/167 (75%), Gaps = 5/167 (2%)
Query: 39 EYEKNLKAYHNSPQYLAYMAAKAKGKQAQQAAEEREAQAQGFSGKNADRRIDIQPAEDED 98
EY +++KAYHNSP YLAY+ AK++ +AA E E++ + + + + IQPAED D
Sbjct: 90 EYNESMKAYHNSPAYLAYINAKSRA----EAALEEESRQRQSRMEKGEPYMSIQPAEDPD 145
Query: 99 EQEDGYSVKHVAYARYLRNHRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKK 158
+ +DG+S+KH A AR+ RNHRLI+EI S+SVVPDVRSVVTT RMQVLKRQVQSL +HQ+K
Sbjct: 146 DYDDGFSMKHTATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQRK 205
Query: 159 LEAELQQIEEKFEAKKRKFVESSEQFQEELKKP-GMGPEGYLNRLSA 204
LEAEL QIEE+ + KKRKF+ES++ F ELK+ G+ E + +++A
Sbjct: 206 LEAELLQIEERHQEKKRKFLESTDSFNNELKRLCGLKVEVDMEKIAA 252
>sp|Q9NU22|MDN1_HUMAN Midasin OS=Homo sapiens GN=MDN1 PE=1 SV=2
Length = 5596
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 28/34 (82%)
Query: 341 TGQLVFQEGVLAKAMRLGYWIILDELNLAPLPFL 374
+G+LVF+EGVL AMR GYWIILDELNLAP L
Sbjct: 1128 SGKLVFKEGVLIDAMRKGYWIILDELNLAPTDVL 1161
Score = 38.1 bits (87), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 331 HPHQNCAHPETGQLV-FQEGVLAKAMRLGYWIILDELNLA 369
H Q E L F EG LA+A++ G WI+LDE+NLA
Sbjct: 802 HAQQQMKMTENTLLFAFVEGTLAQAVKKGEWILLDEINLA 841
Score = 36.6 bits (83), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 26/37 (70%)
Query: 342 GQLVFQEGVLAKAMRLGYWIILDELNLAPLPFLLYLL 378
G+ V+Q G L +A +G+WI+L++++ APL + L+
Sbjct: 379 GEFVWQPGTLTQAATMGHWILLEDIDYAPLDVVSVLI 415
Score = 36.2 bits (82), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 22/28 (78%)
Query: 342 GQLVFQEGVLAKAMRLGYWIILDELNLA 369
G+ +++G L A++ G+W++LDELNLA
Sbjct: 1801 GEFAWRDGPLLAALKAGHWVVLDELNLA 1828
>sp|Q8VHK2|CSKI1_RAT Caskin-1 OS=Rattus norvegicus GN=Caskin1 PE=1 SV=1
Length = 1430
Score = 32.7 bits (73), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 40/99 (40%), Gaps = 24/99 (24%)
Query: 222 SVPPMHGG--QTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPY-----PPPQ 274
SVPP+ G Q P H PP P +PGSP G GP P PQ
Sbjct: 758 SVPPVPGKPRQVLPSGVSHFTPP-------QTPTKAQPGSPQALGGPHGPATAKVKPTPQ 810
Query: 275 QYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQ 313
P +P++PR PQ PTH G AY PQ
Sbjct: 811 LLPPTDRPMSPRS--------LPQSPTH--RGFAYVLPQ 839
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.134 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 175,923,042
Number of Sequences: 539616
Number of extensions: 9633716
Number of successful extensions: 68204
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 2503
Number of HSP's that attempted gapping in prelim test: 39377
Number of HSP's gapped (non-prelim): 14134
length of query: 379
length of database: 191,569,459
effective HSP length: 119
effective length of query: 260
effective length of database: 127,355,155
effective search space: 33112340300
effective search space used: 33112340300
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)