Query psy1953
Match_columns 379
No_of_seqs 323 out of 438
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 20:31:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1953.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1953hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4715|consensus 100.0 1.6E-63 3.5E-68 481.7 11.8 195 6-204 82-290 (410)
2 KOG1924|consensus 99.7 5.4E-17 1.2E-21 172.5 18.0 227 119-377 426-662 (1102)
3 COG5271 MDN1 AAA ATPase contai 99.4 3.8E-14 8.2E-19 159.2 3.0 53 325-377 923-975 (4600)
4 KOG1924|consensus 99.3 8.8E-11 1.9E-15 125.9 16.7 28 1-31 292-321 (1102)
5 KOG1808|consensus 98.9 4E-10 8.6E-15 130.6 2.3 54 325-378 475-528 (1856)
6 COG5271 MDN1 AAA ATPase contai 98.7 9.1E-09 2E-13 117.3 3.6 55 323-377 1572-1631(4600)
7 PF07728 AAA_5: AAA domain (dy 98.2 2.4E-07 5.3E-12 79.0 -1.3 46 332-378 41-86 (139)
8 TIGR01650 PD_CobS cobaltochela 97.9 8.7E-06 1.9E-10 81.6 3.9 54 324-377 98-154 (327)
9 KOG3671|consensus 97.4 0.0039 8.5E-08 65.6 15.4 18 349-368 496-513 (569)
10 TIGR02640 gas_vesic_GvpN gas v 97.3 0.0002 4.3E-09 68.8 3.2 37 342-378 90-126 (262)
11 KOG0381|consensus 97.1 0.00014 3.1E-09 59.2 0.8 42 8-49 42-93 (96)
12 PTZ00199 high mobility group p 97.1 0.00022 4.8E-09 59.1 1.2 40 9-48 43-93 (94)
13 KOG1923|consensus 97.0 0.0071 1.5E-07 66.3 11.8 12 53-64 122-133 (830)
14 PF00505 HMG_box: HMG (high mo 96.9 0.00019 4E-09 54.7 -0.6 40 8-47 20-61 (69)
15 KOG3671|consensus 96.7 0.018 4E-07 60.7 11.7 12 98-109 192-203 (569)
16 cd01389 MATA_HMG-box MATA_HMG- 96.6 0.00038 8.2E-09 55.1 -1.1 31 8-38 21-52 (77)
17 PHA02244 ATPase-like protein 96.5 0.0019 4.1E-08 66.3 3.2 34 345-378 168-201 (383)
18 cd01390 HMGB-UBF_HMG-box HMGB- 96.3 0.0012 2.5E-08 49.7 0.2 42 8-49 20-63 (66)
19 KOG1923|consensus 96.2 0.07 1.5E-06 58.9 13.0 11 16-26 43-53 (830)
20 smart00398 HMG high mobility g 96.1 0.0014 3.1E-08 49.4 -0.1 42 7-48 20-63 (70)
21 KOG1830|consensus 96.0 0.21 4.5E-06 52.2 15.0 32 20-51 35-67 (518)
22 PF07726 AAA_3: ATPase family 95.5 0.008 1.7E-07 53.4 2.0 42 332-378 41-83 (131)
23 PHA03247 large tegument protei 95.2 0.21 4.5E-06 61.4 12.9 9 355-363 3024-3032(3151)
24 cd01388 SOX-TCF_HMG-box SOX-TC 95.2 0.0063 1.4E-07 47.6 0.4 40 8-47 21-62 (72)
25 COG0714 MoxR-like ATPases [Gen 94.8 0.015 3.3E-07 57.4 2.0 53 324-378 77-133 (329)
26 KOG1808|consensus 94.8 0.0091 2E-07 71.1 0.4 36 342-377 197-232 (1856)
27 COG5648 NHP6B Chromatin-associ 94.6 0.013 2.7E-07 55.8 0.8 41 7-47 89-131 (211)
28 cd00084 HMG-box High Mobility 94.3 0.014 3.1E-07 43.3 0.3 41 8-48 20-62 (66)
29 KOG4672|consensus 94.2 0.34 7.3E-06 50.5 10.0 29 9-37 39-67 (487)
30 PHA03247 large tegument protei 93.8 1 2.2E-05 55.8 14.2 25 100-125 2450-2474(3151)
31 PF09011 HMG_box_2: HMG-box do 93.3 0.021 4.6E-07 44.7 -0.3 36 13-48 29-73 (73)
32 PRK13407 bchI magnesium chelat 93.2 0.048 1E-06 55.1 2.1 55 322-378 90-149 (334)
33 PF08549 SWI-SNF_Ssr4: Fungal 93.2 0.23 4.9E-06 54.4 7.2 77 102-181 281-398 (669)
34 KOG4849|consensus 93.1 1 2.2E-05 46.4 11.1 14 114-127 91-104 (498)
35 TIGR02030 BchI-ChlI magnesium 91.1 0.13 2.9E-06 51.9 2.2 56 321-378 94-152 (337)
36 KOG1830|consensus 88.2 6.4 0.00014 41.6 11.8 12 348-359 456-467 (518)
37 KOG0132|consensus 87.4 11 0.00023 42.6 13.4 11 319-329 691-701 (894)
38 CHL00081 chlI Mg-protoporyphyr 87.2 0.25 5.4E-06 50.4 0.9 55 322-378 108-165 (350)
39 PRK13729 conjugal transfer pil 86.5 14 0.00031 39.4 13.4 51 139-190 68-118 (475)
40 PF06346 Drf_FH1: Formin Homol 86.5 14 0.00031 33.7 11.5 8 251-258 61-68 (160)
41 PF12774 AAA_6: Hydrolytic ATP 86.0 0.46 1E-05 45.6 2.0 37 341-377 68-104 (231)
42 PF06346 Drf_FH1: Formin Homol 84.7 25 0.00054 32.2 12.2 9 250-258 72-80 (160)
43 KOG0527|consensus 84.0 0.53 1.2E-05 47.8 1.5 39 9-47 83-122 (331)
44 PRK13406 bchD magnesium chelat 83.5 0.68 1.5E-05 50.2 2.2 57 320-378 53-114 (584)
45 TIGR02031 BchD-ChlD magnesium 82.9 0.48 1E-05 51.2 0.8 48 329-378 55-105 (589)
46 cd09235 V_Alix Middle V-domain 82.9 5.6 0.00012 40.1 8.3 64 108-171 213-278 (339)
47 KOG2893|consensus 82.6 21 0.00046 35.4 11.7 16 99-114 20-35 (341)
48 KOG4672|consensus 82.1 5.5 0.00012 41.8 7.9 11 39-49 88-99 (487)
49 KOG4849|consensus 81.1 19 0.00042 37.4 11.2 6 303-308 334-339 (498)
50 KOG4191|consensus 78.9 3.3 7E-05 43.9 5.1 65 104-180 370-434 (516)
51 KOG3771|consensus 78.3 77 0.0017 33.9 14.9 21 105-125 83-103 (460)
52 KOG2893|consensus 77.9 27 0.00058 34.7 10.7 6 319-324 228-233 (341)
53 PF12238 MSA-2c: Merozoite sur 77.5 12 0.00027 35.8 8.2 57 114-170 22-78 (205)
54 PRK11331 5-methylcytosine-spec 76.4 2.6 5.6E-05 44.8 3.6 31 342-372 250-287 (459)
55 PF03962 Mnd1: Mnd1 family; I 75.0 20 0.00043 33.5 8.8 56 112-167 27-96 (188)
56 TIGR02442 Cob-chelat-sub cobal 71.9 2.1 4.6E-05 46.6 1.8 57 320-378 86-147 (633)
57 PF03276 Gag_spuma: Spumavirus 71.5 1.4E+02 0.0031 32.7 15.0 13 332-344 286-298 (582)
58 PHA03378 EBNA-3B; Provisional 71.4 96 0.0021 35.1 13.9 20 112-131 399-418 (991)
59 KOG1925|consensus 69.5 13 0.00028 40.3 6.8 17 205-221 211-227 (817)
60 PRK07764 DNA polymerase III su 68.1 2.3E+02 0.0049 32.5 17.8 16 342-357 548-563 (824)
61 PF10211 Ax_dynein_light: Axon 67.1 15 0.00032 34.4 6.0 32 142-173 129-160 (189)
62 PF06394 Pepsin-I3: Pepsin inh 66.7 1.7 3.7E-05 35.5 -0.2 26 23-48 32-59 (76)
63 PRK11637 AmiB activator; Provi 65.6 30 0.00066 35.7 8.6 22 105-126 9-30 (428)
64 PRK09039 hypothetical protein; 65.2 15 0.00033 37.3 6.2 44 139-182 136-179 (343)
65 PF08581 Tup_N: Tup N-terminal 62.9 52 0.0011 27.0 7.7 48 141-188 26-73 (79)
66 KOG4590|consensus 61.3 38 0.00083 35.7 8.3 11 124-134 48-58 (409)
67 PF07334 IFP_35_N: Interferon- 60.8 18 0.00038 29.7 4.6 28 150-177 3-30 (76)
68 PF06005 DUF904: Protein of un 60.3 68 0.0015 25.8 7.9 32 140-171 18-56 (72)
69 PHA03378 EBNA-3B; Provisional 60.0 1.8E+02 0.0038 33.1 13.2 11 16-26 259-269 (991)
70 PF03233 Cauli_AT: Aphid trans 58.4 45 0.00098 31.0 7.4 31 98-131 72-102 (163)
71 PRK14950 DNA polymerase III su 57.2 2E+02 0.0044 31.2 13.3 16 342-357 503-518 (585)
72 COG3883 Uncharacterized protei 56.9 46 0.001 33.1 7.7 33 142-174 40-72 (265)
73 PF05308 Mito_fiss_reg: Mitoch 56.7 59 0.0013 32.0 8.4 19 19-37 17-35 (253)
74 PHA03046 Hypothetical protein; 56.7 1.3E+02 0.0029 27.2 9.8 71 110-180 59-131 (142)
75 PF07926 TPR_MLP1_2: TPR/MLP1/ 56.5 66 0.0014 28.1 7.9 49 140-188 59-107 (132)
76 smart00338 BRLZ basic region l 56.2 47 0.001 25.3 6.1 37 139-175 25-61 (65)
77 PF09738 DUF2051: Double stran 55.5 47 0.001 33.5 7.6 69 105-174 78-146 (302)
78 COG4026 Uncharacterized protei 55.1 52 0.0011 32.4 7.5 40 140-179 135-174 (290)
79 KOG2675|consensus 55.0 27 0.00058 37.2 5.9 33 158-190 173-205 (480)
80 PF06005 DUF904: Protein of un 54.5 87 0.0019 25.2 7.6 30 142-171 6-35 (72)
81 PF11559 ADIP: Afadin- and alp 53.8 38 0.00082 29.9 6.0 20 183-202 130-149 (151)
82 TIGR02449 conserved hypothetic 53.7 1E+02 0.0023 24.5 7.7 50 140-189 7-59 (65)
83 PF04977 DivIC: Septum formati 53.6 40 0.00086 26.0 5.5 28 142-169 19-46 (80)
84 COG3883 Uncharacterized protei 53.4 58 0.0012 32.5 7.7 41 140-180 52-92 (265)
85 KOG4360|consensus 52.9 51 0.0011 35.9 7.6 71 114-189 232-302 (596)
86 COG3937 Uncharacterized conser 52.5 56 0.0012 28.5 6.5 24 109-132 18-41 (108)
87 KOG1962|consensus 52.3 41 0.00088 32.6 6.3 48 142-190 136-186 (216)
88 KOG0526|consensus 52.2 8 0.00017 41.9 1.7 39 13-51 558-603 (615)
89 KOG0241|consensus 51.8 24 0.00051 41.1 5.2 42 5-46 267-309 (1714)
90 KOG3091|consensus 51.7 39 0.00084 36.4 6.6 65 137-202 352-420 (508)
91 PF05791 Bacillus_HBL: Bacillu 50.9 78 0.0017 29.3 7.8 66 139-204 109-174 (184)
92 PF04859 DUF641: Plant protein 50.2 1.4E+02 0.003 26.8 8.9 53 137-190 77-129 (131)
93 PF05308 Mito_fiss_reg: Mitoch 49.6 98 0.0021 30.5 8.6 15 155-169 123-137 (253)
94 PF05266 DUF724: Protein of un 49.6 47 0.001 31.3 6.1 21 39-59 16-36 (190)
95 PRK14950 DNA polymerase III su 49.5 2.4E+02 0.0052 30.7 12.3 15 176-190 329-343 (585)
96 TIGR01843 type_I_hlyD type I s 49.0 91 0.002 31.1 8.5 60 119-178 182-241 (423)
97 KOG2010|consensus 48.6 1.8E+02 0.0039 30.2 10.4 26 141-166 155-180 (405)
98 PF03028 Dynein_heavy: Dynein 47.0 12 0.00026 41.0 2.1 26 346-371 159-184 (707)
99 PRK14162 heat shock protein Gr 45.8 99 0.0021 29.4 7.7 43 139-181 38-80 (194)
100 PF07334 IFP_35_N: Interferon- 45.7 44 0.00095 27.4 4.6 33 142-174 2-34 (76)
101 PF06637 PV-1: PV-1 protein (P 45.7 39 0.00084 35.5 5.3 24 103-126 244-267 (442)
102 PF08317 Spc7: Spc7 kinetochor 45.3 75 0.0016 31.9 7.3 38 140-177 209-246 (325)
103 cd00632 Prefoldin_beta Prefold 45.2 80 0.0017 26.4 6.4 39 142-180 65-103 (105)
104 PRK14139 heat shock protein Gr 45.0 95 0.0021 29.3 7.4 39 142-180 34-72 (185)
105 KOG0119|consensus 44.7 3E+02 0.0064 30.1 11.7 17 293-309 439-455 (554)
106 PF00170 bZIP_1: bZIP transcri 44.4 1.1E+02 0.0024 23.2 6.6 35 140-174 26-60 (64)
107 PRK02119 hypothetical protein; 44.1 1.2E+02 0.0025 24.4 6.8 27 144-170 6-32 (73)
108 PF10481 CENP-F_N: Cenp-F N-te 43.6 80 0.0017 31.9 6.9 44 137-180 15-58 (307)
109 PRK13531 regulatory ATPase Rav 43.5 11 0.00023 40.6 1.1 44 331-378 81-128 (498)
110 PRK14161 heat shock protein Gr 43.5 94 0.002 29.0 7.1 24 141-164 27-50 (178)
111 PF07106 TBPIP: Tat binding pr 43.4 91 0.002 28.1 6.9 24 142-165 81-104 (169)
112 COG1579 Zn-ribbon protein, pos 43.4 1E+02 0.0022 30.3 7.6 52 139-190 102-153 (239)
113 KOG0307|consensus 43.3 3.7E+02 0.0081 31.8 12.9 24 39-66 397-420 (1049)
114 PRK14143 heat shock protein Gr 42.8 1E+02 0.0023 30.1 7.6 43 139-181 66-108 (238)
115 PRK13729 conjugal transfer pil 42.7 1.1E+02 0.0024 33.0 8.3 12 142-153 78-89 (475)
116 PF02183 HALZ: Homeobox associ 41.7 49 0.0011 24.3 3.9 28 142-169 14-41 (45)
117 cd07612 BAR_Bin2 The Bin/Amphi 41.3 73 0.0016 30.7 6.2 134 43-188 28-166 (211)
118 COG1730 GIM5 Predicted prefold 41.2 1.4E+02 0.0031 27.2 7.7 40 142-181 96-135 (145)
119 KOG1925|consensus 41.0 34 0.00074 37.3 4.2 8 39-46 48-55 (817)
120 PRK04406 hypothetical protein; 40.9 1.6E+02 0.0034 23.8 7.1 29 143-171 7-35 (75)
121 PF11932 DUF3450: Protein of u 40.9 1.3E+02 0.0028 28.9 7.8 20 142-161 58-77 (251)
122 COG2433 Uncharacterized conser 40.5 1.1E+02 0.0023 34.1 7.8 12 27-38 320-331 (652)
123 PF06698 DUF1192: Protein of u 40.5 99 0.0022 24.2 5.7 35 149-184 23-57 (59)
124 PRK14158 heat shock protein Gr 40.5 1.4E+02 0.0031 28.3 7.9 42 140-181 40-81 (194)
125 PF15112 DUF4559: Domain of un 40.4 94 0.002 31.7 7.0 10 1-10 128-137 (307)
126 PRK14163 heat shock protein Gr 40.2 1.1E+02 0.0025 29.5 7.3 39 142-180 42-80 (214)
127 PF06320 GCN5L1: GCN5-like pro 40.1 1.6E+02 0.0035 25.7 7.7 53 138-190 31-86 (121)
128 PRK00888 ftsB cell division pr 40.1 88 0.0019 26.7 5.9 28 142-169 29-56 (105)
129 PF00038 Filament: Intermediat 39.6 1.5E+02 0.0033 28.8 8.3 42 142-183 225-266 (312)
130 KOG4438|consensus 39.3 40 0.00086 35.8 4.3 31 104-134 99-129 (446)
131 PF09340 NuA4: Histone acetylt 39.3 71 0.0015 26.1 5.0 33 147-179 2-34 (80)
132 KOG4005|consensus 38.8 1.6E+02 0.0034 29.4 8.0 49 119-172 74-122 (292)
133 PRK14155 heat shock protein Gr 38.8 1E+02 0.0022 29.6 6.7 38 143-180 16-53 (208)
134 KOG0837|consensus 38.4 65 0.0014 32.2 5.4 43 138-180 225-267 (279)
135 PRK14154 heat shock protein Gr 38.3 1.3E+02 0.0027 29.1 7.2 17 57-74 15-31 (208)
136 KOG0993|consensus 38.1 60 0.0013 34.5 5.3 32 172-203 151-182 (542)
137 PTZ00421 coronin; Provisional 38.0 84 0.0018 33.5 6.6 44 142-185 448-491 (493)
138 PRK15422 septal ring assembly 38.0 2.4E+02 0.0051 23.5 7.8 28 138-165 16-43 (79)
139 KOG0162|consensus 37.9 1.1E+02 0.0024 35.0 7.6 22 342-363 1066-1090(1106)
140 PF13874 Nup54: Nucleoporin co 37.7 2E+02 0.0044 25.4 8.1 44 138-181 49-92 (141)
141 PF15397 DUF4618: Domain of un 37.3 96 0.0021 30.8 6.4 51 140-190 45-99 (258)
142 COG4942 Membrane-bound metallo 37.1 1.1E+02 0.0024 32.4 7.2 40 141-180 46-85 (420)
143 PF11932 DUF3450: Protein of u 37.1 84 0.0018 30.2 6.0 25 142-166 44-68 (251)
144 PF04102 SlyX: SlyX; InterPro 37.1 1.5E+02 0.0033 23.2 6.4 25 146-170 3-27 (69)
145 smart00350 MCM minichromosome 37.1 18 0.00039 38.4 1.5 37 340-378 285-321 (509)
146 PF07926 TPR_MLP1_2: TPR/MLP1/ 37.0 1.9E+02 0.0042 25.1 7.7 48 139-186 65-112 (132)
147 PRK11239 hypothetical protein; 36.9 92 0.002 30.2 6.1 64 104-168 148-211 (215)
148 PF09421 FRQ: Frequency clock 36.6 39 0.00084 39.2 4.0 49 142-190 130-196 (989)
149 cd07591 BAR_Rvs161p The Bin/Am 36.3 74 0.0016 30.5 5.4 47 142-188 125-171 (224)
150 PF12718 Tropomyosin_1: Tropom 36.3 1.6E+02 0.0035 26.3 7.3 39 142-180 30-68 (143)
151 PRK10803 tol-pal system protei 36.1 1.3E+02 0.0028 29.5 7.1 49 132-180 32-80 (263)
152 KOG4368|consensus 36.0 6.7E+02 0.015 28.2 14.5 15 357-371 459-473 (757)
153 PF04728 LPP: Lipoprotein leuc 35.8 2.1E+02 0.0045 22.2 8.0 31 141-171 4-34 (56)
154 PF06632 XRCC4: DNA double-str 35.7 2.1E+02 0.0045 29.5 8.7 23 39-63 51-73 (342)
155 PF10267 Tmemb_cc2: Predicted 35.6 1.6E+02 0.0035 31.0 8.1 67 114-190 242-316 (395)
156 PRK14145 heat shock protein Gr 35.4 1.7E+02 0.0037 27.9 7.6 42 140-181 45-86 (196)
157 PF04977 DivIC: Septum formati 35.3 1.9E+02 0.0041 22.1 6.7 27 140-166 24-50 (80)
158 PF10234 Cluap1: Clusterin-ass 35.0 1.5E+02 0.0032 29.7 7.4 21 16-36 27-50 (267)
159 TIGR03495 phage_LysB phage lys 34.9 2E+02 0.0043 26.0 7.5 67 142-209 49-116 (135)
160 PF09755 DUF2046: Uncharacteri 34.7 88 0.0019 31.9 5.8 56 142-197 137-192 (310)
161 COG0542 clpA ATP-binding subun 34.7 24 0.00052 40.0 2.0 37 342-378 575-614 (786)
162 PRK00736 hypothetical protein; 34.6 2.3E+02 0.005 22.3 7.8 21 149-169 7-27 (68)
163 PF07407 Seadorna_VP6: Seadorn 34.6 1.5E+02 0.0033 30.8 7.4 37 135-171 27-63 (420)
164 PF05529 Bap31: B-cell recepto 34.4 80 0.0017 29.0 5.2 14 110-123 96-109 (192)
165 COG1239 ChlI Mg-chelatase subu 34.4 30 0.00066 36.5 2.6 54 323-378 107-165 (423)
166 PRK14148 heat shock protein Gr 34.1 1.9E+02 0.004 27.6 7.6 41 140-180 40-80 (195)
167 PF05529 Bap31: B-cell recepto 34.0 1.6E+02 0.0035 27.0 7.1 8 183-190 165-172 (192)
168 PF10473 CENP-F_leu_zip: Leuci 33.9 2E+02 0.0043 26.1 7.4 29 141-169 88-116 (140)
169 TIGR02894 DNA_bind_RsfA transc 33.9 2E+02 0.0044 26.8 7.5 30 142-171 106-135 (161)
170 TIGR00635 ruvB Holliday juncti 33.7 28 0.00061 33.5 2.1 27 352-378 76-102 (305)
171 cd07588 BAR_Amphiphysin The Bi 33.7 93 0.002 29.7 5.6 47 142-188 120-166 (211)
172 PF03992 ABM: Antibiotic biosy 33.7 20 0.00043 26.7 0.9 33 27-59 43-78 (78)
173 PF03954 Lectin_N: Hepatic lec 33.6 93 0.002 28.3 5.2 53 138-190 78-130 (138)
174 PF07716 bZIP_2: Basic region 33.5 1.2E+02 0.0026 22.4 5.1 27 142-168 27-53 (54)
175 PHA03373 tegument protein; Pro 33.4 4.2E+02 0.009 26.2 9.8 62 112-174 76-146 (247)
176 PF13851 GAS: Growth-arrest sp 33.3 2.2E+02 0.0047 26.9 8.0 42 140-181 93-134 (201)
177 COG2109 BtuR ATP:corrinoid ade 33.3 21 0.00045 34.1 1.1 18 352-369 115-134 (198)
178 PRK10884 SH3 domain-containing 33.3 1.8E+02 0.0038 27.8 7.4 12 142-153 95-106 (206)
179 KOG3647|consensus 33.2 1.5E+02 0.0033 30.0 7.1 49 142-190 121-179 (338)
180 PF02183 HALZ: Homeobox associ 33.1 1.8E+02 0.0039 21.3 5.8 35 142-176 7-41 (45)
181 TIGR00219 mreC rod shape-deter 33.1 1.9E+02 0.0042 28.6 7.9 40 147-190 66-105 (283)
182 PRK00846 hypothetical protein; 33.0 2E+02 0.0043 23.6 6.6 19 147-165 13-31 (77)
183 TIGR03752 conj_TIGR03752 integ 32.8 1.2E+02 0.0027 32.5 6.8 42 140-181 66-107 (472)
184 PRK11637 AmiB activator; Provi 32.7 1.8E+02 0.0038 30.1 7.9 36 142-177 98-133 (428)
185 PRK14157 heat shock protein Gr 32.6 1.5E+02 0.0032 29.0 6.8 36 145-180 82-117 (227)
186 KOG0995|consensus 32.5 90 0.0019 34.3 5.8 52 139-190 445-496 (581)
187 PF11853 DUF3373: Protein of u 32.4 20 0.00043 38.6 0.9 28 141-168 32-59 (489)
188 PRK14140 heat shock protein Gr 32.4 1.9E+02 0.0041 27.4 7.3 36 142-177 39-74 (191)
189 PRK14160 heat shock protein Gr 32.3 2.1E+02 0.0046 27.6 7.7 42 140-181 61-102 (211)
190 PF03961 DUF342: Protein of un 32.1 90 0.002 32.6 5.7 29 140-168 334-362 (451)
191 cd07623 BAR_SNX1_2 The Bin/Amp 32.1 1.9E+02 0.004 27.5 7.4 31 160-190 155-185 (224)
192 PRK14151 heat shock protein Gr 31.9 1.9E+02 0.004 27.0 7.1 36 145-180 25-60 (176)
193 PF13851 GAS: Growth-arrest sp 31.9 1.9E+02 0.0042 27.2 7.4 47 142-189 81-127 (201)
194 cd00225 API3 Ascaris pepsin in 31.7 22 0.00047 32.8 0.9 27 23-49 115-143 (159)
195 PF14931 IFT20: Intraflagellar 31.3 1.7E+02 0.0038 25.7 6.4 23 104-126 9-31 (120)
196 KOG2391|consensus 31.3 1.5E+02 0.0032 30.8 6.8 37 140-176 232-268 (365)
197 PF05008 V-SNARE: Vesicle tran 31.1 2.4E+02 0.0052 21.9 6.8 48 142-189 27-78 (79)
198 PF15358 TSKS: Testis-specific 31.1 3.7E+02 0.008 28.9 9.7 38 128-165 119-157 (558)
199 PF08614 ATG16: Autophagy prot 30.7 2.5E+02 0.0053 26.0 7.8 7 119-125 92-98 (194)
200 TIGR02338 gimC_beta prefoldin, 30.6 1.8E+02 0.004 24.5 6.4 37 142-178 69-105 (110)
201 PF07377 DUF1493: Protein of u 30.5 24 0.00052 30.0 1.0 13 349-361 97-109 (111)
202 PF07045 DUF1330: Protein of u 30.4 38 0.00083 25.9 2.0 15 42-56 50-64 (65)
203 KOG0971|consensus 30.3 2E+02 0.0043 33.7 8.1 76 115-190 375-455 (1243)
204 PF07876 Dabb: Stress responsi 30.3 39 0.00085 26.8 2.1 23 39-62 62-84 (97)
205 PF08537 NBP1: Fungal Nap bind 30.2 3.3E+02 0.0072 28.0 9.0 55 137-196 172-227 (323)
206 PHA02047 phage lambda Rz1-like 30.0 2.8E+02 0.006 24.0 7.1 29 141-169 35-63 (101)
207 PF01078 Mg_chelatase: Magnesi 29.8 39 0.00083 32.4 2.3 32 345-378 96-127 (206)
208 KOG4715|consensus 29.7 1E+02 0.0023 31.7 5.4 32 128-159 216-247 (410)
209 PRK05771 V-type ATP synthase s 29.7 2.1E+02 0.0045 31.4 8.2 39 137-175 212-250 (646)
210 KOG1984|consensus 29.6 5.4E+02 0.012 30.1 11.3 8 283-290 203-210 (1007)
211 TIGR02894 DNA_bind_RsfA transc 29.4 1.9E+02 0.0042 26.9 6.6 35 140-174 111-145 (161)
212 PF02388 FemAB: FemAB family; 29.4 1.5E+02 0.0032 30.7 6.7 29 139-167 241-269 (406)
213 PF07321 YscO: Type III secret 29.4 4.1E+02 0.0089 24.3 8.8 53 112-172 47-99 (152)
214 cd08915 V_Alix_like Protein-in 29.4 2.2E+02 0.0047 28.5 7.7 34 139-172 249-282 (342)
215 PF11559 ADIP: Afadin- and alp 29.3 3.4E+02 0.0073 23.9 8.1 33 142-174 68-100 (151)
216 PF01025 GrpE: GrpE; InterPro 29.3 63 0.0014 28.7 3.5 30 142-171 20-49 (165)
217 PRK07764 DNA polymerase III su 29.1 9.4E+02 0.02 27.7 17.1 7 3-9 77-84 (824)
218 PRK03992 proteasome-activating 28.9 1.6E+02 0.0035 30.1 6.8 48 142-190 3-50 (389)
219 PF12001 DUF3496: Domain of un 28.9 1.5E+02 0.0032 26.0 5.5 29 142-170 9-38 (111)
220 cd04776 HTH_GnyR Helix-Turn-He 28.9 2.6E+02 0.0056 23.9 7.1 26 142-167 82-107 (118)
221 PRK09039 hypothetical protein; 28.8 2E+02 0.0044 29.2 7.4 38 140-177 144-181 (343)
222 PRK14144 heat shock protein Gr 28.8 2.4E+02 0.0052 27.0 7.4 39 142-180 47-85 (199)
223 PF05377 FlaC_arch: Flagella a 28.8 2.8E+02 0.006 21.5 6.3 29 142-170 9-37 (55)
224 TIGR01628 PABP-1234 polyadenyl 28.6 4.3E+02 0.0093 28.0 10.1 18 109-126 183-200 (562)
225 PF07195 FliD_C: Flagellar hoo 28.6 1.8E+02 0.0038 27.7 6.6 34 139-172 192-225 (239)
226 KOG4590|consensus 28.1 1.6E+02 0.0035 31.1 6.7 17 357-373 366-382 (409)
227 TIGR01069 mutS2 MutS2 family p 28.0 1.8E+02 0.004 32.9 7.5 8 349-356 734-741 (771)
228 PF02162 XYPPX: XYPPX repeat ( 28.0 47 0.001 19.4 1.5 12 300-311 3-14 (15)
229 PF06103 DUF948: Bacterial pro 27.8 3.2E+02 0.007 21.9 7.3 37 142-178 35-71 (90)
230 PF04380 BMFP: Membrane fusoge 27.8 1E+02 0.0022 25.0 4.1 33 136-168 46-78 (79)
231 COG5470 Uncharacterized conser 27.7 59 0.0013 27.8 2.8 18 42-59 64-81 (96)
232 PRK14147 heat shock protein Gr 27.6 2.1E+02 0.0046 26.5 6.7 36 145-180 23-58 (172)
233 KOG2391|consensus 27.6 2.5E+02 0.0055 29.2 7.7 38 144-181 218-255 (365)
234 PF00158 Sigma54_activat: Sigm 27.6 15 0.00032 33.4 -0.9 45 332-378 70-114 (168)
235 COG2433 Uncharacterized conser 27.4 1.3E+02 0.0027 33.6 5.9 25 142-166 438-462 (652)
236 PF04880 NUDE_C: NUDE protein, 27.4 1.1E+02 0.0024 28.5 4.7 22 143-164 3-24 (166)
237 PF04912 Dynamitin: Dynamitin 27.3 2.7E+02 0.0058 28.6 8.1 25 156-180 352-376 (388)
238 KOG3850|consensus 27.3 2.5E+02 0.0053 29.9 7.6 19 172-190 346-364 (455)
239 cd00561 CobA_CobO_BtuR ATP:cor 27.2 37 0.0008 31.0 1.6 17 353-369 89-107 (159)
240 KOG3859|consensus 27.1 3.9E+02 0.0085 27.6 8.8 19 161-179 366-384 (406)
241 KOG0288|consensus 27.0 1.5E+02 0.0033 31.6 6.1 27 142-168 43-69 (459)
242 COG1359 Uncharacterized conser 26.9 54 0.0012 27.1 2.4 34 27-60 44-80 (100)
243 PF03670 UPF0184: Uncharacteri 26.8 3.8E+02 0.0082 22.4 7.7 22 149-170 42-63 (83)
244 KOG0804|consensus 26.8 2.1E+02 0.0045 30.9 7.1 9 182-190 434-442 (493)
245 smart00787 Spc7 Spc7 kinetocho 26.7 2.3E+02 0.0049 28.7 7.3 33 142-174 206-238 (312)
246 PF11629 Mst1_SARAH: C termina 26.7 2.8E+02 0.0061 21.1 5.9 37 142-181 10-46 (49)
247 PF08614 ATG16: Autophagy prot 26.7 2.5E+02 0.0054 26.0 7.1 16 152-167 121-136 (194)
248 PF07106 TBPIP: Tat binding pr 26.5 4.5E+02 0.0099 23.5 8.6 56 118-173 36-105 (169)
249 KOG0971|consensus 26.5 2.2E+02 0.0048 33.4 7.6 35 156-190 1003-1037(1243)
250 PF13094 CENP-Q: CENP-Q, a CEN 26.4 3.5E+02 0.0076 24.1 7.8 29 142-170 29-57 (160)
251 KOG4603|consensus 26.4 2.8E+02 0.0061 26.4 7.2 28 140-167 86-113 (201)
252 cd00890 Prefoldin Prefoldin is 26.3 2.3E+02 0.005 23.7 6.3 36 142-177 89-124 (129)
253 PF11853 DUF3373: Protein of u 26.3 62 0.0013 34.9 3.3 32 138-170 23-54 (489)
254 TIGR00368 Mg chelatase-related 26.2 45 0.00098 35.7 2.3 33 344-378 284-316 (499)
255 KOG3248|consensus 26.1 39 0.00085 35.0 1.7 49 18-66 221-275 (421)
256 PF14257 DUF4349: Domain of un 26.1 3.5E+02 0.0075 26.0 8.2 53 112-164 102-156 (262)
257 PF10234 Cluap1: Clusterin-ass 26.1 2.5E+02 0.0054 28.1 7.3 49 142-190 178-236 (267)
258 PRK14141 heat shock protein Gr 26.0 2.3E+02 0.005 27.2 6.8 30 140-169 38-67 (209)
259 COG3200 AroG 3-deoxy-D-arabino 26.0 81 0.0018 33.0 3.9 34 39-72 150-183 (445)
260 PF13388 DUF4106: Protein of u 26.0 3.4E+02 0.0073 28.0 8.1 116 42-183 3-121 (422)
261 KOG4462|consensus 25.8 7.2E+02 0.016 26.3 10.6 109 217-348 291-399 (437)
262 COG4026 Uncharacterized protei 25.8 1.7E+02 0.0037 29.0 5.9 39 142-180 165-203 (290)
263 PF06810 Phage_GP20: Phage min 25.7 2.6E+02 0.0055 25.4 6.8 38 142-179 36-76 (155)
264 cd07590 BAR_Bin3 The Bin/Amphi 25.7 1.4E+02 0.0029 29.0 5.3 47 142-188 124-172 (225)
265 TIGR01834 PHA_synth_III_E poly 25.7 7.5E+02 0.016 25.5 11.6 48 142-190 265-317 (320)
266 PF12325 TMF_TATA_bd: TATA ele 25.7 3.7E+02 0.0081 23.6 7.5 24 142-165 32-55 (120)
267 PRK14161 heat shock protein Gr 25.7 5.2E+02 0.011 24.1 8.9 40 142-181 21-60 (178)
268 PF10498 IFT57: Intra-flagella 25.5 1.8E+02 0.0038 30.1 6.3 17 195-211 310-326 (359)
269 KOG4370|consensus 25.5 2.2E+02 0.0047 30.6 7.0 18 15-32 327-345 (514)
270 PF06156 DUF972: Protein of un 25.4 2.1E+02 0.0044 24.7 5.8 40 136-175 18-57 (107)
271 PF04201 TPD52: Tumour protein 25.4 1.4E+02 0.0031 27.7 5.1 35 142-176 31-65 (162)
272 PF15290 Syntaphilin: Golgi-lo 25.4 1.7E+02 0.0037 29.7 5.9 31 142-172 77-107 (305)
273 PRK00888 ftsB cell division pr 25.3 3.1E+02 0.0068 23.3 6.8 30 139-168 33-62 (105)
274 PF05546 She9_MDM33: She9 / Md 25.1 3.4E+02 0.0074 26.2 7.7 49 139-188 31-79 (207)
275 PF14942 Muted: Organelle biog 25.1 1.2E+02 0.0026 27.4 4.5 20 176-195 104-125 (145)
276 PRK11034 clpA ATP-dependent Cl 25.0 42 0.00091 37.9 1.9 32 347-378 545-578 (758)
277 PF14712 Snapin_Pallidin: Snap 24.9 2.1E+02 0.0046 23.0 5.5 35 140-174 14-48 (92)
278 PF08317 Spc7: Spc7 kinetochor 24.9 2.7E+02 0.0058 28.0 7.4 30 142-171 218-247 (325)
279 PF15058 Speriolin_N: Sperioli 24.7 1.4E+02 0.003 28.7 5.0 31 141-171 6-36 (200)
280 TIGR01834 PHA_synth_III_E poly 24.7 1.5E+02 0.0032 30.4 5.5 31 138-168 287-317 (320)
281 PF13801 Metal_resist: Heavy-m 24.7 2.9E+02 0.0064 22.0 6.4 18 182-199 73-90 (125)
282 cd07627 BAR_Vps5p The Bin/Amph 24.6 3.2E+02 0.0068 25.7 7.4 33 158-190 147-179 (216)
283 PF08912 Rho_Binding: Rho Bind 24.3 2.7E+02 0.0059 22.5 5.8 27 146-172 2-28 (69)
284 COG1382 GimC Prefoldin, chaper 24.2 2.8E+02 0.0061 24.6 6.5 36 142-177 72-107 (119)
285 PF01920 Prefoldin_2: Prefoldi 24.2 2.3E+02 0.005 22.8 5.7 33 142-174 64-96 (106)
286 PRK03947 prefoldin subunit alp 24.2 3.4E+02 0.0073 23.5 7.1 41 140-180 94-134 (140)
287 TIGR01628 PABP-1234 polyadenyl 24.0 4.8E+02 0.01 27.7 9.5 10 109-118 221-230 (562)
288 PRK14146 heat shock protein Gr 24.0 3E+02 0.0065 26.5 7.2 39 142-180 56-94 (215)
289 PF09730 BicD: Microtubule-ass 23.9 2.4E+02 0.0053 32.0 7.4 56 122-177 245-302 (717)
290 PF07352 Phage_Mu_Gam: Bacteri 23.9 3.1E+02 0.0067 24.3 6.9 43 139-184 9-51 (149)
291 TIGR03752 conj_TIGR03752 integ 23.8 2.6E+02 0.0056 30.2 7.2 53 138-190 71-123 (472)
292 PF02622 DUF179: Uncharacteriz 23.7 79 0.0017 28.3 3.1 23 342-364 116-138 (161)
293 PF08826 DMPK_coil: DMPK coile 23.7 3.3E+02 0.0072 21.3 6.1 39 138-176 23-61 (61)
294 PF12325 TMF_TATA_bd: TATA ele 23.7 3.2E+02 0.0069 24.0 6.7 34 156-190 70-103 (120)
295 PF12718 Tropomyosin_1: Tropom 23.6 4.1E+02 0.0088 23.8 7.6 31 140-170 35-65 (143)
296 PF13815 Dzip-like_N: Iguana/D 23.6 3.1E+02 0.0068 23.4 6.6 9 159-167 85-93 (118)
297 PRK14153 heat shock protein Gr 23.5 2.3E+02 0.0049 27.0 6.2 28 147-174 40-67 (194)
298 KOG1922|consensus 23.5 1.9E+02 0.0041 32.6 6.6 6 53-58 124-129 (833)
299 PRK05986 cob(I)alamin adenolsy 23.5 43 0.00093 31.6 1.4 18 352-369 108-127 (191)
300 PF04533 Herpes_U44: Herpes vi 23.4 3E+02 0.0065 26.7 7.0 50 105-155 63-114 (210)
301 cd00632 Prefoldin_beta Prefold 23.4 4E+02 0.0087 22.1 7.1 32 140-171 70-101 (105)
302 COG5509 Uncharacterized small 23.4 2E+02 0.0043 22.9 4.7 26 149-174 27-52 (65)
303 PF04156 IncA: IncA protein; 23.4 2.1E+02 0.0046 25.8 5.9 17 144-160 134-150 (191)
304 PF10186 Atg14: UV radiation r 23.3 3.8E+02 0.0082 25.4 7.8 10 342-351 253-262 (302)
305 COG1579 Zn-ribbon protein, pos 23.2 3.2E+02 0.007 26.9 7.3 31 142-172 112-142 (239)
306 PF03342 Rhabdo_M1: Rhabdoviru 23.1 2E+02 0.0043 27.7 5.6 57 121-180 58-114 (219)
307 PF02084 Bindin: Bindin; Inte 23.1 3.4E+02 0.0075 26.7 7.3 68 98-169 83-153 (238)
308 KOG2129|consensus 23.0 2.1E+02 0.0046 30.7 6.3 21 107-127 116-136 (552)
309 PRK06798 fliD flagellar cappin 23.0 3.1E+02 0.0067 29.0 7.7 32 140-171 379-410 (440)
310 PF06810 Phage_GP20: Phage min 22.9 3.3E+02 0.0071 24.7 6.9 33 142-174 43-78 (155)
311 PF07200 Mod_r: Modifier of ru 22.9 3E+02 0.0064 24.1 6.5 20 160-179 68-87 (150)
312 PRK09862 putative ATP-dependen 22.9 55 0.0012 35.2 2.2 33 344-378 283-315 (506)
313 PF06273 eIF-4B: Plant specifi 22.8 2.9E+02 0.0063 30.0 7.4 46 171-220 402-447 (492)
314 PRK14011 prefoldin subunit alp 22.6 4.4E+02 0.0096 23.8 7.6 33 142-174 90-122 (144)
315 PRK14156 heat shock protein Gr 22.6 2.9E+02 0.0063 25.9 6.6 23 142-164 36-58 (177)
316 KOG4010|consensus 22.5 1.7E+02 0.0037 28.1 5.1 49 142-190 46-99 (208)
317 KOG2129|consensus 22.5 4.1E+02 0.0088 28.7 8.2 14 191-204 322-335 (552)
318 PRK14155 heat shock protein Gr 22.3 4.5E+02 0.0098 25.2 8.0 31 140-170 20-50 (208)
319 PRK07414 cob(I)yrinic acid a,c 22.2 47 0.001 31.1 1.3 16 354-369 110-127 (178)
320 PF06785 UPF0242: Uncharacteri 22.2 3.8E+02 0.0083 28.0 7.8 52 116-172 107-159 (401)
321 PF04518 Effector_1: Effector 22.2 2E+02 0.0042 30.2 5.9 80 87-171 273-360 (379)
322 TIGR01069 mutS2 MutS2 family p 22.1 2.8E+02 0.006 31.5 7.5 12 347-358 710-721 (771)
323 PF10211 Ax_dynein_light: Axon 22.0 4.1E+02 0.0088 24.8 7.5 28 144-171 124-151 (189)
324 PF04625 DEC-1_N: DEC-1 protei 22.0 5E+02 0.011 27.1 8.5 9 328-336 162-170 (407)
325 PHA01750 hypothetical protein 22.0 2.2E+02 0.0048 23.0 4.9 28 162-190 43-70 (75)
326 COG5185 HEC1 Protein involved 22.0 1.3E+02 0.0027 32.8 4.5 31 142-172 297-327 (622)
327 PF05278 PEARLI-4: Arabidopsis 21.8 3.7E+02 0.008 27.0 7.5 6 164-169 217-222 (269)
328 PF01166 TSC22: TSC-22/dip/bun 21.8 2.1E+02 0.0047 22.5 4.6 23 141-163 15-37 (59)
329 PF02370 M: M protein repeat; 21.8 2E+02 0.0043 18.3 3.6 16 156-171 3-18 (21)
330 PF00038 Filament: Intermediat 21.7 4.8E+02 0.01 25.4 8.3 48 142-189 218-265 (312)
331 PF03670 UPF0184: Uncharacteri 21.6 3.5E+02 0.0075 22.7 6.1 35 140-174 26-60 (83)
332 PF05384 DegS: Sensor protein 21.5 4.1E+02 0.0088 24.5 7.2 46 139-184 26-71 (159)
333 PF15254 CCDC14: Coiled-coil d 21.4 1.4E+02 0.003 34.1 4.9 11 115-125 400-410 (861)
334 PRK09343 prefoldin subunit bet 21.4 3.3E+02 0.0073 23.5 6.4 37 142-178 73-109 (121)
335 TIGR02338 gimC_beta prefoldin, 21.3 2.4E+02 0.0052 23.8 5.4 33 140-172 74-106 (110)
336 COG3879 Uncharacterized protei 21.2 4.2E+02 0.009 26.3 7.6 50 139-188 56-105 (247)
337 KOG1666|consensus 21.2 49 0.0011 32.1 1.3 35 15-49 44-86 (220)
338 PF01025 GrpE: GrpE; InterPro 21.2 4.9E+02 0.011 22.9 7.7 30 142-171 13-42 (165)
339 cd09237 V_ScBro1_like Protein- 21.2 1.9E+02 0.0042 29.2 5.6 33 139-171 256-288 (356)
340 PRK14149 heat shock protein Gr 21.1 3.2E+02 0.007 25.9 6.7 29 139-167 42-70 (191)
341 KOG0250|consensus 21.0 3.8E+02 0.0082 31.8 8.3 49 142-190 750-801 (1074)
342 cd09234 V_HD-PTP_like Protein- 20.9 3.6E+02 0.0077 27.2 7.4 33 139-171 243-275 (337)
343 PF05667 DUF812: Protein of un 20.8 4.5E+02 0.0099 29.1 8.6 63 109-171 290-359 (594)
344 PF05837 CENP-H: Centromere pr 20.7 4.1E+02 0.0089 22.5 6.7 28 142-169 19-46 (106)
345 KOG4571|consensus 20.6 2.7E+02 0.0059 28.3 6.3 32 157-189 251-282 (294)
346 PF07820 TraC: TraC-like prote 20.6 5.4E+02 0.012 22.0 7.2 30 149-178 4-33 (92)
347 COG3937 Uncharacterized conser 20.5 1.6E+02 0.0034 25.8 4.0 39 119-163 68-106 (108)
348 COG0576 GrpE Molecular chapero 20.5 3.8E+02 0.0083 25.2 7.0 25 140-164 43-67 (193)
349 PF05518 Totivirus_coat: Totiv 20.5 9.5E+02 0.021 27.6 11.0 20 39-58 464-483 (759)
350 TIGR03592 yidC_oxa1_cterm memb 20.5 3.5E+02 0.0076 24.7 6.7 29 152-180 27-55 (181)
351 cd00584 Prefoldin_alpha Prefol 20.5 3.4E+02 0.0075 23.0 6.3 31 142-172 89-119 (129)
352 PF13815 Dzip-like_N: Iguana/D 20.5 2.7E+02 0.0059 23.8 5.6 28 145-172 78-105 (118)
353 PF07888 CALCOCO1: Calcium bin 20.4 2.1E+02 0.0045 31.4 5.9 6 44-49 50-55 (546)
354 PF10779 XhlA: Haemolysin XhlA 20.4 4.2E+02 0.0092 20.7 6.6 18 146-163 5-22 (71)
355 cd07611 BAR_Amphiphysin_I_II T 20.4 2.1E+02 0.0045 27.6 5.3 47 142-188 120-166 (211)
356 PF10146 zf-C4H2: Zinc finger- 20.2 4E+02 0.0086 25.9 7.3 38 140-177 32-69 (230)
357 PF10186 Atg14: UV radiation r 20.1 4.5E+02 0.0098 24.9 7.6 16 144-159 81-96 (302)
358 PRK14141 heat shock protein Gr 20.1 5.2E+02 0.011 24.9 7.9 39 143-181 34-72 (209)
359 PRK14164 heat shock protein Gr 20.1 3E+02 0.0065 26.7 6.3 25 140-164 77-101 (218)
360 COG0576 GrpE Molecular chapero 20.0 5.4E+02 0.012 24.2 7.9 34 147-180 43-76 (193)
No 1
>KOG4715|consensus
Probab=100.00 E-value=1.6e-63 Score=481.71 Aligned_cols=195 Identities=50% Similarity=0.757 Sum_probs=186.6
Q ss_pred cccCCCCCchhhhhhhhhccc-cCCCcccccchh--------hHHHHHHHhhCCHHHHHHHHHHHHhHHhHHHHHHHHHH
Q psy1953 6 FQNGTSRQLQANCYGQSIGGC-SKIPQCNENNFS--------EYEKNLKAYHNSPQYLAYMAAKAKGKQAQQAAEEREAQ 76 (379)
Q Consensus 6 f~~~~n~dl~lweigKiig~m-~~l~d~ek~~~~--------eY~~~~k~yhnSpay~ayi~aK~ra~~~~~~~~~~~~~ 76 (379)
-++..||||||||||||||+| +||+|+||++|+ ||||+||+|||||+|++||+||+||+++ +|+++|+++
T Consensus 82 ~VkA~nPe~kLWeiGK~Ig~mW~dLpd~EK~ey~~EYeaEKieY~~smkayh~sp~y~ayinaKsra~a~-le~~sr~~~ 160 (410)
T KOG4715|consen 82 QVKASNPELKLWEIGKIIGGMWLDLPDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAKSRAEAA-LEEESRQRQ 160 (410)
T ss_pred hhhccCcchHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHhhhhhhhhhh-hcccccccc
Confidence 467899999999999999999 999999999998 8999999999999999999999999998 588888877
Q ss_pred hhcCCCCCCCCcceecccCCCCccCCCccccccccccccchHHHHHHHhcCCCCCCccchhhhhHHHHHHHHHHHHHHHH
Q psy1953 77 AQGFSGKNADRRIDIQPAEDEDEQEDGYSVKHVAYARYLRNHRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQ 156 (379)
Q Consensus 77 ~~~~~~~~~~~~~~iqpaeD~dD~dd~~S~k~laaarfdRNhrLmsELfsd~vVpd~rS~vt~dRiq~LkkQVqsL~~eQ 156 (379)
++++++++|||||||+|+||+|||||+||++.+||+||||||++||+.+||+|+||+|+..||++|++||++|..||
T Consensus 161 ---sr~~~ge~~~~IQPaeDeDD~ddg~stkhla~arf~rN~rLIsei~SesvVpDvrsVVtt~RMqvlkrQv~SL~~HQ 237 (410)
T KOG4715|consen 161 ---SRMEKGEPYMSIQPAEDEDDYDDGFSTKHLATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQ 237 (410)
T ss_pred ---chhhcCCcceecccccCccccccccchhhhhhhhhhhhhHHHHHHhccccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC-----CCCCchhhhhhhcc
Q psy1953 157 KKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK-----PGMGPEGYLNRLSA 204 (379)
Q Consensus 157 eKLeaELqqlEeefqeKKrK~~E~sEkf~~ELKK-----~~vdeE~~~~~l~~ 204 (379)
.||++||.++|++|+++|++|++++|.|++|||| +.||+|+|+.+|+.
T Consensus 238 ~KLEaEL~q~Ee~hq~kKrk~~estdsf~~eLKr~c~~kvevd~eK~~~~i~q 290 (410)
T KOG4715|consen 238 RKLEAELLQIEERHQEKKRKFLESTDSFNNELKRLCGLKVEVDMEKMAAEIAQ 290 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCcccccHHHHHHHHHH
Confidence 9999999999999999999999999999999999 88999998876644
No 2
>KOG1924|consensus
Probab=99.74 E-value=5.4e-17 Score=172.48 Aligned_cols=227 Identities=24% Similarity=0.331 Sum_probs=103.0
Q ss_pred HHHHHHhcCCCCCCcc---chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHhcC--
Q psy1953 119 RLINEIFSDSVVPDVR---SVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESS---EQFQEELKK-- 190 (379)
Q Consensus 119 rLmsELfsd~vVpd~r---S~vt~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~s---Ekf~~ELKK-- 190 (379)
+||.||.+++|++... ......++++...++-+.+.+++|+++--+ +-.+-..||.++. .+..+||+|
T Consensus 426 kLIEecISqIvlHr~~~DPdf~yr~~l~id~~~liD~~vdkak~eeseq----kA~e~~kk~~ke~ta~qe~qael~k~e 501 (1102)
T KOG1924|consen 426 KLIEECISQIVLHRTGMDPDFKYRFRLDIDLTELIDKMVDKAKAEESEQ----KAAELEKKFDKELTARQEAQAELQKHE 501 (1102)
T ss_pred HHHHHHHHHHHHhcCCCCCCcchhhcccCcHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHhh
Confidence 7999999999987332 112234466666666666666666554322 2223333444432 344566666
Q ss_pred CCCC-chhhhhhhccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy1953 191 PGMG-PEGYLNRLSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGP 269 (379)
Q Consensus 191 ~~vd-eE~~~~~l~~r~v~~a~~~~~~~~~~p~p~p~~~~~~~~~~~~~pppp~~p~~~~~ppppp~p~~~p~pP~~p~~ 269 (379)
..|. +++ ..++.+.-.....+ -+++|+||+.||+|| +.+|||||+||.||.+++ |||| ||.||--|+
T Consensus 502 ~Ki~~l~a--e~~al~s~~~~~~~-~~~iP~PP~~pp~gG---~g~pppPppPPlpggag~--PPPP----pplPg~aG~ 569 (1102)
T KOG1924|consen 502 EKIKLLEA--EKQALSSPSQLLPI-DGGIPPPPPLPPTGG---TGPPPPPPPPPLPGGAGP--PPPP----PPLPGIAGG 569 (1102)
T ss_pred hhcccCch--hhhhccCcccCCCC-CCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCC--CccC----CCCCcccCC
Confidence 2222 111 12222222222222 234444444444433 223333334444433222 2221 223333333
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCC-ceEEeec
Q psy1953 270 YPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHYPPHPGSQHPHQNCAHPET-GQLVFQE 348 (379)
Q Consensus 270 ~pp~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ph~~~~~~~g~~~~~~~-g~~~~~e 348 (379)
||||||+||++.|+||+||++-.+-|+|++|++-.+ .+|- -+.+++|- -.|-.... -+|.|.-
T Consensus 570 PPpPppppg~~gppPPPpp~g~~Gg~ppPP~~gm~p--maPv-------lP~gLkpK-------K~~k~e~~Mrr~nW~k 633 (1102)
T KOG1924|consen 570 PPPPPPPPGGGGPPPPPPPGGFLGGPPPPPPPGMFP--MAPV-------LPFGLKPK-------KVYKPEVPMRRFNWSK 633 (1102)
T ss_pred CCccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCccc--cccc-------CCCCCCcc-------ccCCCCCccccCCccc
Confidence 444444444443333333222222222222222211 2222 33444331 23333333 5677766
Q ss_pred hHHHHHHhcCcEEEEeccccCChhhhhhh
Q psy1953 349 GVLAKAMRLGYWIILDELNLAPLPFLLYL 377 (379)
Q Consensus 349 g~l~~a~r~g~w~~ldelnlA~~~vl~~l 377 (379)
=+-.+--++--||=..|--|+..|.+-.|
T Consensus 634 I~p~d~s~~cFWvkv~Edk~en~dlfakL 662 (1102)
T KOG1924|consen 634 IVPRDLSENCFWVKVNEDKLENDDLFAKL 662 (1102)
T ss_pred cCccccCccceeeecchhhccchHHHHHH
Confidence 44444456788999999999988888765
No 3
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.43 E-value=3.8e-14 Score=159.22 Aligned_cols=53 Identities=47% Similarity=0.742 Sum_probs=51.3
Q ss_pred CCCCCCCCcccccCCCCceEEeechHHHHHHhcCcEEEEeccccCChhhhhhh
Q psy1953 325 PHPGSQHPHQNCAHPETGQLVFQEGVLAKAMRLGYWIILDELNLAPLPFLLYL 377 (379)
Q Consensus 325 ph~~~~~~~g~~~~~~~g~~~~~eg~l~~a~r~g~w~~ldelnlA~~~vl~~l 377 (379)
.|++-|+|+|+|+++.+|++.|+||+||.|||+|+|||||||||||+||||+|
T Consensus 923 EHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~GyWIVLDELNLApTDVLEaL 975 (4600)
T COG5271 923 EHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRGYWIVLDELNLAPTDVLEAL 975 (4600)
T ss_pred ccchHHHHhhceeecCCCceeeehhHHHHHHhcCcEEEeeccccCcHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999985
No 4
>KOG1924|consensus
Probab=99.28 E-value=8.8e-11 Score=125.93 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=20.9
Q ss_pred CCcc-ccccCCCCCchhhhhhhhhccc-cCCCc
Q psy1953 1 LNSC-QFQNGTSRQLQANCYGQSIGGC-SKIPQ 31 (379)
Q Consensus 1 ~~~~-~f~~~~n~dl~lweigKiig~m-~~l~d 31 (379)
+|+| .|.+ ...|++-|+. .|.++ +..+|
T Consensus 292 iv~gl~~~e--~~~l~vacmq-~INal~t~p~d 321 (1102)
T KOG1924|consen 292 IVEGLDFLE--KQQLQVACMQ-FINALVTSPSD 321 (1102)
T ss_pred HHHHHhccc--hHHHHHHHHH-HHHHhcCCHHH
Confidence 4677 5554 7888888888 88888 77776
No 5
>KOG1808|consensus
Probab=98.91 E-value=4e-10 Score=130.58 Aligned_cols=54 Identities=46% Similarity=0.669 Sum_probs=51.3
Q ss_pred CCCCCCCCcccccCCCCceEEeechHHHHHHhcCcEEEEeccccCChhhhhhhc
Q psy1953 325 PHPGSQHPHQNCAHPETGQLVFQEGVLAKAMRLGYWIILDELNLAPLPFLLYLL 378 (379)
Q Consensus 325 ph~~~~~~~g~~~~~~~g~~~~~eg~l~~a~r~g~w~~ldelnlA~~~vl~~l~ 378 (379)
-|++.|+|+|+|..+.+|.++|++|+||.|+|+|+|++|||||||++|||++|.
T Consensus 475 ehtd~qeyig~y~~~~~g~l~freg~LV~Alr~G~~~vlD~lnla~~dvL~aLn 528 (1856)
T KOG1808|consen 475 EHTDLQEYIGTYVADDNGDLVFREGVLVQALRNGDWIVLDELNLAPHDVLEALN 528 (1856)
T ss_pred ccchHHHHHHhhhcCCCCCeeeehhHHHHHHHhCCEEEeccccccchHHHHHHH
Confidence 478889999999999999999999999999999999999999999999999974
No 6
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.69 E-value=9.1e-09 Score=117.34 Aligned_cols=55 Identities=29% Similarity=0.371 Sum_probs=49.9
Q ss_pred CCCCCCCCC----CcccccCCCC-ceEEeechHHHHHHhcCcEEEEeccccCChhhhhhh
Q psy1953 323 YPPHPGSQH----PHQNCAHPET-GQLVFQEGVLAKAMRLGYWIILDELNLAPLPFLLYL 377 (379)
Q Consensus 323 ~~ph~~~~~----~~g~~~~~~~-g~~~~~eg~l~~a~r~g~w~~ldelnlA~~~vl~~l 377 (379)
+-.+|.+|+ ++|++...+. |.|.|.|..++.|||+|.||+|||||||++.|||+|
T Consensus 1572 iRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEiNLaSQSVlEGL 1631 (4600)
T COG5271 1572 IRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEINLASQSVLEGL 1631 (4600)
T ss_pred EEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeehhhhhHHHHHHHH
Confidence 345788888 8999977664 999999999999999999999999999999999997
No 7
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.16 E-value=2.4e-07 Score=79.03 Aligned_cols=46 Identities=39% Similarity=0.536 Sum_probs=39.3
Q ss_pred CcccccCCCCceEEeechHHHHHHhcCcEEEEeccccCChhhhhhhc
Q psy1953 332 PHQNCAHPETGQLVFQEGVLAKAMRLGYWIILDELNLAPLPFLLYLL 378 (379)
Q Consensus 332 ~~g~~~~~~~g~~~~~eg~l~~a~r~g~w~~ldelnlA~~~vl~~l~ 378 (379)
++|.|... +|.+.|.+|.|++|+++|.||+|||||+|+.+|++.|+
T Consensus 41 l~g~~~~~-~~~~~~~~~~l~~a~~~~~il~lDEin~a~~~v~~~L~ 86 (139)
T PF07728_consen 41 LIGSYDPS-NGQFEFKDGPLVRAMRKGGILVLDEINRAPPEVLESLL 86 (139)
T ss_dssp HHCEEET--TTTTCEEE-CCCTTHHEEEEEEESSCGG--HHHHHTTH
T ss_pred ceeeeeec-ccccccccccccccccceeEEEECCcccCCHHHHHHHH
Confidence 78988765 89999999999999999999999999999999999875
No 8
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.90 E-value=8.7e-06 Score=81.62 Aligned_cols=54 Identities=15% Similarity=0.156 Sum_probs=43.5
Q ss_pred CCCCCCCCCcccccCC---CCceEEeechHHHHHHhcCcEEEEeccccCChhhhhhh
Q psy1953 324 PPHPGSQHPHQNCAHP---ETGQLVFQEGVLAKAMRLGYWIILDELNLAPLPFLLYL 377 (379)
Q Consensus 324 ~ph~~~~~~~g~~~~~---~~g~~~~~eg~l~~a~r~g~w~~ldelnlA~~~vl~~l 377 (379)
..|+....++|..+-. ....+.|++|+|+.|+++|.||+|||||+|+.+|+.+|
T Consensus 98 ~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDEin~a~p~~~~~L 154 (327)
T TIGR01650 98 DSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDEYDAGRPDVMFVI 154 (327)
T ss_pred cCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEechhhccCHHHHHHH
Confidence 3455555588886432 22458999999999999999999999999999998874
No 9
>KOG3671|consensus
Probab=97.44 E-value=0.0039 Score=65.57 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=14.2
Q ss_pred hHHHHHHhcCcEEEEecccc
Q psy1953 349 GVLAKAMRLGYWIILDELNL 368 (379)
Q Consensus 349 g~l~~a~r~g~w~~ldelnl 368 (379)
|.|.+.||+| ..|+.+.-
T Consensus 496 ~~LmaqIRqG--~~Lk~v~~ 513 (569)
T KOG3671|consen 496 DALMAQIRQG--GQLKKVDS 513 (569)
T ss_pred HHHHHHHHhc--ccccccch
Confidence 6899999999 77776654
No 10
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.25 E-value=0.0002 Score=68.79 Aligned_cols=37 Identities=22% Similarity=0.228 Sum_probs=34.1
Q ss_pred ceEEeechHHHHHHhcCcEEEEeccccCChhhhhhhc
Q psy1953 342 GQLVFQEGVLAKAMRLGYWIILDELNLAPLPFLLYLL 378 (379)
Q Consensus 342 g~~~~~eg~l~~a~r~g~w~~ldelnlA~~~vl~~l~ 378 (379)
+...|.+|.|+.|+++|.||+|||||.|+.+++..||
T Consensus 90 ~~~~~~~g~l~~A~~~g~~lllDEi~r~~~~~q~~Ll 126 (262)
T TIGR02640 90 VRQNWVDNRLTLAVREGFTLVYDEFTRSKPETNNVLL 126 (262)
T ss_pred cceeecCchHHHHHHcCCEEEEcchhhCCHHHHHHHH
Confidence 4568999999999999999999999999999988875
No 11
>KOG0381|consensus
Probab=97.14 E-value=0.00014 Score=59.16 Aligned_cols=42 Identities=17% Similarity=0.397 Sum_probs=36.4
Q ss_pred cCCCCCchhhhhhhhhccc-cCCCcccccchh--------hHHHHHH-HhhC
Q psy1953 8 NGTSRQLQANCYGQSIGGC-SKIPQCNENNFS--------EYEKNLK-AYHN 49 (379)
Q Consensus 8 ~~~n~dl~lweigKiig~m-~~l~d~ek~~~~--------eY~~~~k-~yhn 49 (379)
+.+||++.+++|+|+||.| .+|+|++|+.|. +|.+.|+ .|..
T Consensus 42 k~~~p~~~~~~v~k~~g~~W~~l~~~~k~~y~~ka~~~k~~Y~~~~~~~~~~ 93 (96)
T KOG0381|consen 42 KAENPGLSVGEVAKALGEMWKNLAEEEKQPYEEKASKLKEKYEKELAGEYKA 93 (96)
T ss_pred HHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5679999999999999999 999999999988 6777777 5543
No 12
>PTZ00199 high mobility group protein; Provisional
Probab=97.05 E-value=0.00022 Score=59.15 Aligned_cols=40 Identities=20% Similarity=0.449 Sum_probs=35.6
Q ss_pred CCCCCch--hhhhhhhhccc-cCCCcccccchh--------hHHHHHHHhh
Q psy1953 9 GTSRQLQ--ANCYGQSIGGC-SKIPQCNENNFS--------EYEKNLKAYH 48 (379)
Q Consensus 9 ~~n~dl~--lweigKiig~m-~~l~d~ek~~~~--------eY~~~~k~yh 48 (379)
..||++. +++|+|+||.| ++|++++|..|. +|.+.|++|.
T Consensus 43 ~~~P~~~~~~~evsk~ige~Wk~ls~eeK~~y~~~A~~dk~rY~~e~~~Y~ 93 (94)
T PTZ00199 43 AENPELAKDVAAVGKMVGEAWNKLSEEEKAPYEKKAQEDKVRYEKEKAEYA 93 (94)
T ss_pred HHCcCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4688886 89999999999 999999999998 6888888884
No 13
>KOG1923|consensus
Probab=96.96 E-value=0.0071 Score=66.32 Aligned_cols=12 Identities=17% Similarity=0.293 Sum_probs=5.0
Q ss_pred HHHHHHHHHHhH
Q psy1953 53 YLAYMAAKAKGK 64 (379)
Q Consensus 53 y~ayi~aK~ra~ 64 (379)
|+.||.+-...+
T Consensus 122 ld~yi~~~~e~e 133 (830)
T KOG1923|consen 122 LDKYIDAPPENE 133 (830)
T ss_pred hhhhhhcchhhh
Confidence 344444443333
No 14
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=96.89 E-value=0.00019 Score=54.65 Aligned_cols=40 Identities=10% Similarity=0.215 Sum_probs=34.2
Q ss_pred cCCCCCchhhhhhhhhccc-cCCCcccccchh-hHHHHHHHh
Q psy1953 8 NGTSRQLQANCYGQSIGGC-SKIPQCNENNFS-EYEKNLKAY 47 (379)
Q Consensus 8 ~~~n~dl~lweigKiig~m-~~l~d~ek~~~~-eY~~~~k~y 47 (379)
+..|+++...+|+++||+| ++|++++|..|. ++++..+.|
T Consensus 20 k~~~p~~~~~~i~~~~~~~W~~l~~~eK~~y~~~a~~~~~~y 61 (69)
T PF00505_consen 20 KEENPDLSNKEISKILAQMWKNLSEEEKAPYKEEAEEEKERY 61 (69)
T ss_dssp HHHSTTSTHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccccccchhhHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999 999999999998 555555555
No 15
>KOG3671|consensus
Probab=96.66 E-value=0.018 Score=60.69 Aligned_cols=12 Identities=0% Similarity=-0.313 Sum_probs=5.0
Q ss_pred CccCCCcccccc
Q psy1953 98 DEQEDGYSVKHV 109 (379)
Q Consensus 98 dD~dd~~S~k~l 109 (379)
++.+..+++.+.
T Consensus 192 e~~n~~~tS~~~ 203 (569)
T KOG3671|consen 192 ELLNPLITSLTD 203 (569)
T ss_pred hhhccccccccc
Confidence 344444444433
No 16
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=96.56 E-value=0.00038 Score=55.05 Aligned_cols=31 Identities=13% Similarity=0.089 Sum_probs=29.2
Q ss_pred cCCCCCchhhhhhhhhccc-cCCCcccccchh
Q psy1953 8 NGTSRQLQANCYGQSIGGC-SKIPQCNENNFS 38 (379)
Q Consensus 8 ~~~n~dl~lweigKiig~m-~~l~d~ek~~~~ 38 (379)
...||++...||++|||.| ++|++++|+.|.
T Consensus 21 ~~~~p~~~~~eisk~~g~~Wk~ls~eeK~~y~ 52 (77)
T cd01389 21 KTENPGLTNNEISRIIGRMWRSESPEVKAYYK 52 (77)
T ss_pred HHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 4679999999999999999 999999999998
No 17
>PHA02244 ATPase-like protein
Probab=96.49 E-value=0.0019 Score=66.31 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=31.9
Q ss_pred EeechHHHHHHhcCcEEEEeccccCChhhhhhhc
Q psy1953 345 VFQEGVLAKAMRLGYWIILDELNLAPLPFLLYLL 378 (379)
Q Consensus 345 ~~~eg~l~~a~r~g~w~~ldelnlA~~~vl~~l~ 378 (379)
.|.+|.|++|+++|.||+|||||+|+.+|+.+|+
T Consensus 168 ~~~dgpLl~A~~~GgvLiLDEId~a~p~vq~~L~ 201 (383)
T PHA02244 168 KFHETPFYEAFKKGGLFFIDEIDASIPEALIIIN 201 (383)
T ss_pred cccchHHHHHhhcCCEEEEeCcCcCCHHHHHHHH
Confidence 6899999999999999999999999999998764
No 18
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=96.27 E-value=0.0012 Score=49.68 Aligned_cols=42 Identities=10% Similarity=0.225 Sum_probs=37.3
Q ss_pred cCCCCCchhhhhhhhhccc-cCCCcccccchh-hHHHHHHHhhC
Q psy1953 8 NGTSRQLQANCYGQSIGGC-SKIPQCNENNFS-EYEKNLKAYHN 49 (379)
Q Consensus 8 ~~~n~dl~lweigKiig~m-~~l~d~ek~~~~-eY~~~~k~yhn 49 (379)
...++++..-+|+++||.+ ++|++++|+.|. .+++.++.|+.
T Consensus 20 ~~~~p~~~~~~i~~~~~~~W~~ls~~eK~~y~~~a~~~~~~y~~ 63 (66)
T cd01390 20 KKENPDASVTEVTKILGEKWKELSEEEKKKYEEKAEKDKERYEK 63 (66)
T ss_pred HHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 4568889999999999999 999999999998 78888888863
No 19
>KOG1923|consensus
Probab=96.17 E-value=0.07 Score=58.85 Aligned_cols=11 Identities=27% Similarity=0.320 Sum_probs=5.2
Q ss_pred hhhhhhhhccc
Q psy1953 16 ANCYGQSIGGC 26 (379)
Q Consensus 16 lweigKiig~m 26 (379)
|-+|--+|||=
T Consensus 43 lasic~v~gg~ 53 (830)
T KOG1923|consen 43 LASICYVIGGS 53 (830)
T ss_pred HHHHHHHhcCc
Confidence 33444455554
No 20
>smart00398 HMG high mobility group.
Probab=96.11 E-value=0.0014 Score=49.35 Aligned_cols=42 Identities=10% Similarity=0.215 Sum_probs=34.4
Q ss_pred ccCCCCCchhhhhhhhhccc-cCCCcccccchh-hHHHHHHHhh
Q psy1953 7 QNGTSRQLQANCYGQSIGGC-SKIPQCNENNFS-EYEKNLKAYH 48 (379)
Q Consensus 7 ~~~~n~dl~lweigKiig~m-~~l~d~ek~~~~-eY~~~~k~yh 48 (379)
....++++..-+|+++||.+ ++|++++|..|. .+.+..+.|+
T Consensus 20 ~~~~~~~~~~~~i~~~~~~~W~~l~~~ek~~y~~~a~~~~~~y~ 63 (70)
T smart00398 20 IKAENPDLSNAEISKKLGERWKLLSEEEKAPYEEKAKKDKERYE 63 (70)
T ss_pred HHHHCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 44568999999999999999 999999999998 4555555553
No 21
>KOG1830|consensus
Probab=96.04 E-value=0.21 Score=52.21 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=17.4
Q ss_pred hhhhccccCCCcccccchh-hHHHHHHHhhCCH
Q psy1953 20 GQSIGGCSKIPQCNENNFS-EYEKNLKAYHNSP 51 (379)
Q Consensus 20 gKiig~m~~l~d~ek~~~~-eY~~~~k~yhnSp 51 (379)
.-||.|+.-|+--....|- -|++++--||-+-
T Consensus 35 aniIRQLsSLSKhAEdIFGELf~da~~f~~R~N 67 (518)
T KOG1830|consen 35 ANIIRQLSSLSKHAEDIFGELFNDANNFNHRAN 67 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 4456555445533323344 4788877776543
No 22
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.47 E-value=0.008 Score=53.44 Aligned_cols=42 Identities=29% Similarity=0.274 Sum_probs=32.3
Q ss_pred CcccccCC-CCceEEeechHHHHHHhcCcEEEEeccccCChhhhhhhc
Q psy1953 332 PHQNCAHP-ETGQLVFQEGVLAKAMRLGYWIILDELNLAPLPFLLYLL 378 (379)
Q Consensus 332 ~~g~~~~~-~~g~~~~~eg~l~~a~r~g~w~~ldelnlA~~~vl~~l~ 378 (379)
++|...-+ .++.|.|+.|.+.. .+|++||||+||.-|.+.||
T Consensus 41 i~G~~v~~~~~~~f~~~~GPif~-----~ill~DEiNrappktQsAlL 83 (131)
T PF07726_consen 41 ILGFPVYDQETGEFEFRPGPIFT-----NILLADEINRAPPKTQSALL 83 (131)
T ss_dssp HHEEEEEETTTTEEEEEE-TT-S-----SEEEEETGGGS-HHHHHHHH
T ss_pred ceeeeeeccCCCeeEeecChhhh-----ceeeecccccCCHHHHHHHH
Confidence 56776444 45999999999984 69999999999999988876
No 23
>PHA03247 large tegument protein UL36; Provisional
Probab=95.21 E-value=0.21 Score=61.42 Aligned_cols=9 Identities=11% Similarity=0.291 Sum_probs=3.7
Q ss_pred HhcCcEEEE
Q psy1953 355 MRLGYWIIL 363 (379)
Q Consensus 355 ~r~g~w~~l 363 (379)
+++-.|+-.
T Consensus 3024 l~q~~~~~~ 3032 (3151)
T PHA03247 3024 LKQTLWPPD 3032 (3151)
T ss_pred cccCCCCCC
Confidence 344444433
No 24
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=95.20 E-value=0.0063 Score=47.55 Aligned_cols=40 Identities=8% Similarity=0.023 Sum_probs=33.5
Q ss_pred cCCCCCchhhhhhhhhccc-cCCCcccccchh-hHHHHHHHh
Q psy1953 8 NGTSRQLQANCYGQSIGGC-SKIPQCNENNFS-EYEKNLKAY 47 (379)
Q Consensus 8 ~~~n~dl~lweigKiig~m-~~l~d~ek~~~~-eY~~~~k~y 47 (379)
...||++..=||+|+||.+ ++|++++|+.|. ++++....|
T Consensus 21 ~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y 62 (72)
T cd01388 21 LQEYPLKENRAISKILGDRWKALSNEEKQPYYEEAKKLKELH 62 (72)
T ss_pred HHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3579999999999999999 999999999988 555555544
No 25
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.79 E-value=0.015 Score=57.44 Aligned_cols=53 Identities=30% Similarity=0.340 Sum_probs=45.3
Q ss_pred CCCCCCCCCcccccCCC----CceEEeechHHHHHHhcCcEEEEeccccCChhhhhhhc
Q psy1953 324 PPHPGSQHPHQNCAHPE----TGQLVFQEGVLAKAMRLGYWIILDELNLAPLPFLLYLL 378 (379)
Q Consensus 324 ~ph~~~~~~~g~~~~~~----~g~~~~~eg~l~~a~r~g~w~~ldelnlA~~~vl~~l~ 378 (379)
++++....++|.+.-.. .+.|.|..|.|..+++ .-+++||||.|+.+|...||
T Consensus 77 t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~--~ill~DEInra~p~~q~aLl 133 (329)
T COG0714 77 TPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR--VILLLDEINRAPPEVQNALL 133 (329)
T ss_pred CCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc--eEEEEeccccCCHHHHHHHH
Confidence 45566666889995554 6889999999999999 88999999999999998886
No 26
>KOG1808|consensus
Probab=94.78 E-value=0.0091 Score=71.09 Aligned_cols=36 Identities=36% Similarity=0.655 Sum_probs=34.4
Q ss_pred ceEEeechHHHHHHhcCcEEEEeccccCChhhhhhh
Q psy1953 342 GQLVFQEGVLAKAMRLGYWIILDELNLAPLPFLLYL 377 (379)
Q Consensus 342 g~~~~~eg~l~~a~r~g~w~~ldelnlA~~~vl~~l 377 (379)
..|+|+.|++++++++|+|++|||+|||+.+.|+.+
T Consensus 197 ~~f~~~~g~~~~~~~~g~w~lldeinla~~~~l~~i 232 (1856)
T KOG1808|consen 197 ALFVFVPGALVETISNGEWLLLDEINLASAETLELI 232 (1856)
T ss_pred hhhhhchhhHHHHHhccchhhhhhhccchHHHHHHH
Confidence 889999999999999999999999999999999874
No 27
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=94.58 E-value=0.013 Score=55.83 Aligned_cols=41 Identities=10% Similarity=0.169 Sum_probs=34.9
Q ss_pred ccCCCCCchhhhhhhhhccc-cCCCcccccchh-hHHHHHHHh
Q psy1953 7 QNGTSRQLQANCYGQSIGGC-SKIPQCNENNFS-EYEKNLKAY 47 (379)
Q Consensus 7 ~~~~n~dl~lweigKiig~m-~~l~d~ek~~~~-eY~~~~k~y 47 (379)
.+..|++|++-+|||+||.+ ++|+|+||..|. +|+.....|
T Consensus 89 i~~~~p~l~~~e~~k~~~e~WK~Ltd~eke~y~k~~~~~~erY 131 (211)
T COG5648 89 IRKENPKLTFGEVGKLLSEKWKELTDEEKEPYYKEANSDRERY 131 (211)
T ss_pred HHHhCCCCChHHHHHHHHHHHHhccHhhhhhHHHHHhhHHHHH
Confidence 35789999999999999999 999999999988 555555555
No 28
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=94.25 E-value=0.014 Score=43.30 Aligned_cols=41 Identities=12% Similarity=0.285 Sum_probs=35.9
Q ss_pred cCCCCCchhhhhhhhhccc-cCCCcccccchh-hHHHHHHHhh
Q psy1953 8 NGTSRQLQANCYGQSIGGC-SKIPQCNENNFS-EYEKNLKAYH 48 (379)
Q Consensus 8 ~~~n~dl~lweigKiig~m-~~l~d~ek~~~~-eY~~~~k~yh 48 (379)
...++++..=+|+++||++ ++|++++|..|. ++++..+.|.
T Consensus 20 ~~~~~~~~~~~i~~~~~~~W~~l~~~~k~~y~~~a~~~~~~y~ 62 (66)
T cd00084 20 KAENPGLSVGEISKILGEMWKSLSEEEKKKYEEKAEKDKERYE 62 (66)
T ss_pred HHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 4568888899999999999 999999999998 7777777775
No 29
>KOG4672|consensus
Probab=94.20 E-value=0.34 Score=50.48 Aligned_cols=29 Identities=17% Similarity=0.077 Sum_probs=18.2
Q ss_pred CCCCCchhhhhhhhhccccCCCcccccch
Q psy1953 9 GTSRQLQANCYGQSIGGCSKIPQCNENNF 37 (379)
Q Consensus 9 ~~n~dl~lweigKiig~m~~l~d~ek~~~ 37 (379)
.++.-|++-+-+.|+-.|+.|.+-+=+.|
T Consensus 39 VR~a~lk~KDp~qi~~~m~kldem~~~p~ 67 (487)
T KOG4672|consen 39 VRAAVLKYKDPDQITSKMEKLDEMEYNPF 67 (487)
T ss_pred HHHhhhccCCHHHHHHHHHhhcccccCcc
Confidence 34555667777888888866665553333
No 30
>PHA03247 large tegument protein UL36; Provisional
Probab=93.78 E-value=1 Score=55.81 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=14.7
Q ss_pred cCCCccccccccccccchHHHHHHHh
Q psy1953 100 QEDGYSVKHVAYARYLRNHRLINEIF 125 (379)
Q Consensus 100 ~dd~~S~k~laaarfdRNhrLmsELf 125 (379)
.||-|-++.+..+.|.-. .+..++|
T Consensus 2450 ~~dp~~~~~i~g~~~~~~-~~~~~~y 2474 (3151)
T PHA03247 2450 DGDPFFARTILGAPFSLS-LLLGELF 2474 (3151)
T ss_pred CCCCchhheecCCCCCch-hhccccC
Confidence 445566666776666553 3455665
No 31
>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins. It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....
Probab=93.27 E-value=0.021 Score=44.69 Aligned_cols=36 Identities=11% Similarity=0.278 Sum_probs=29.6
Q ss_pred Cchhhhhhhhhccc-cCCCcccccchh--------hHHHHHHHhh
Q psy1953 13 QLQANCYGQSIGGC-SKIPQCNENNFS--------EYEKNLKAYH 48 (379)
Q Consensus 13 dl~lweigKiig~m-~~l~d~ek~~~~--------eY~~~~k~yh 48 (379)
...+=|+.+.||.+ +.|+++||..|. +|++.|+.||
T Consensus 29 ~~~~~e~~k~~~~~Wk~Ls~~EK~~Y~~~A~~~k~~y~~e~~~~~ 73 (73)
T PF09011_consen 29 KQSFREVMKEISERWKSLSEEEKEPYEERAKEDKERYEREMKEWN 73 (73)
T ss_dssp -SSHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45577999999999 999999999999 6888888875
No 32
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=93.25 E-value=0.048 Score=55.06 Aligned_cols=55 Identities=24% Similarity=0.247 Sum_probs=41.5
Q ss_pred CCCCCCCCCC--CcccccCCC---CceEEeechHHHHHHhcCcEEEEeccccCChhhhhhhc
Q psy1953 322 HYPPHPGSQH--PHQNCAHPE---TGQLVFQEGVLAKAMRLGYWIILDELNLAPLPFLLYLL 378 (379)
Q Consensus 322 ~~~ph~~~~~--~~g~~~~~~---~g~~~~~eg~l~~a~r~g~w~~ldelnlA~~~vl~~l~ 378 (379)
...+|++.++ ++|+..-+. .|.|+|+.|.|.+| +|--|+|||||+++.+++..||
T Consensus 90 ~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A--~~GiL~lDEInrl~~~~q~~Ll 149 (334)
T PRK13407 90 VVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARA--NRGYLYIDEVNLLEDHIVDLLL 149 (334)
T ss_pred cccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEc--CCCeEEecChHhCCHHHHHHHH
Confidence 3445555444 899873332 59999999999765 4567999999999999998876
No 33
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=93.22 E-value=0.23 Score=54.36 Aligned_cols=77 Identities=18% Similarity=0.445 Sum_probs=55.8
Q ss_pred CCccccccccccccchHHHHHHHhcC-----CCCC---------Cccch-------------------------hh--hh
Q psy1953 102 DGYSVKHVAYARYLRNHRLINEIFSD-----SVVP---------DVRSV-------------------------VT--TN 140 (379)
Q Consensus 102 d~~S~k~laaarfdRNhrLmsELfsd-----~vVp---------d~rS~-------------------------vt--~d 140 (379)
|-++-|.|..+||..||+.|.|||+- -|++ ++.|. .. ..
T Consensus 281 D~lTPReIS~~RY~qhHEWMEEI~sSPY~i~qI~P~DLGLGrKGEL~sLTeGiF~ap~~~~~~~~~~~~~~~~~gkLdp~ 360 (669)
T PF08549_consen 281 DHLTPREISKMRYQQHHEWMEEILSSPYRISQIEPVDLGLGRKGELESLTEGIFEAPGGQSGDASKEGPKKPYVGKLDPG 360 (669)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHhCccccccccccccCCccccchhhhhcccccCCCCCCccccccCCCcccccCCCHH
Confidence 45899999999999999999999982 1111 11110 00 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1953 141 RMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESS 181 (379)
Q Consensus 141 Riq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~s 181 (379)
+.++++++ ..+++++..+||++++++|..+..||.+.+
T Consensus 361 ~aeeF~kR---V~~~ia~~~AEIekmK~~Hak~m~k~k~~s 398 (669)
T PF08549_consen 361 KAEEFRKR---VAKKIADMNAEIEKMKARHAKRMAKFKRNS 398 (669)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 24555554 446788999999999999999999999885
No 34
>KOG4849|consensus
Probab=93.08 E-value=1 Score=46.40 Aligned_cols=14 Identities=21% Similarity=0.415 Sum_probs=7.3
Q ss_pred ccchHHHHHHHhcC
Q psy1953 114 YLRNHRLINEIFSD 127 (379)
Q Consensus 114 fdRNhrLmsELfsd 127 (379)
|.-...|+.+|.+-
T Consensus 91 ~TTD~DL~~A~~S~ 104 (498)
T KOG4849|consen 91 YTTDADLLKALQST 104 (498)
T ss_pred EeccHHHHHHHHhh
Confidence 33444566666553
No 35
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=91.07 E-value=0.13 Score=51.91 Aligned_cols=56 Identities=23% Similarity=0.235 Sum_probs=44.9
Q ss_pred CCCCCCCCCCCCcccccCC---CCceEEeechHHHHHHhcCcEEEEeccccCChhhhhhhc
Q psy1953 321 PHYPPHPGSQHPHQNCAHP---ETGQLVFQEGVLAKAMRLGYWIILDELNLAPLPFLLYLL 378 (379)
Q Consensus 321 ~~~~ph~~~~~~~g~~~~~---~~g~~~~~eg~l~~a~r~g~w~~ldelnlA~~~vl~~l~ 378 (379)
..+|.|..+..++|+..-+ .+|+|+|..|.|.+| +|-+|+|||||+++..+...||
T Consensus 94 ~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A--~~GvL~lDEi~~L~~~~Q~~Ll 152 (337)
T TIGR02030 94 VDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARA--NRGILYIDEVNLLEDHLVDVLL 152 (337)
T ss_pred CCCCCCCcccceecchhHhhHhhcCCEEeecCcceec--cCCEEEecChHhCCHHHHHHHH
Confidence 3477777777789987322 369999999998855 4788999999999999988775
No 36
>KOG1830|consensus
Probab=88.24 E-value=6.4 Score=41.56 Aligned_cols=12 Identities=33% Similarity=0.382 Sum_probs=8.9
Q ss_pred chHHHHHHhcCc
Q psy1953 348 EGVLAKAMRLGY 359 (379)
Q Consensus 348 eg~l~~a~r~g~ 359 (379)
-..|++|||.|-
T Consensus 456 RsdLL~aIr~Gi 467 (518)
T KOG1830|consen 456 RSDLLAAIRSGI 467 (518)
T ss_pred HHHHHHHHHhcc
Confidence 346888888883
No 37
>KOG0132|consensus
Probab=87.36 E-value=11 Score=42.59 Aligned_cols=11 Identities=36% Similarity=0.709 Sum_probs=5.1
Q ss_pred CCCCCCCCCCC
Q psy1953 319 RPPHYPPHPGS 329 (379)
Q Consensus 319 ~~~~~~ph~~~ 329 (379)
..++|+||..-
T Consensus 691 ~~~~m~P~~~~ 701 (894)
T KOG0132|consen 691 GMRHMPPPPSH 701 (894)
T ss_pred CCCCCCCCCCC
Confidence 34455555443
No 38
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=87.18 E-value=0.25 Score=50.40 Aligned_cols=55 Identities=25% Similarity=0.248 Sum_probs=44.0
Q ss_pred CCCCCCCCCCCcccc---cCCCCceEEeechHHHHHHhcCcEEEEeccccCChhhhhhhc
Q psy1953 322 HYPPHPGSQHPHQNC---AHPETGQLVFQEGVLAKAMRLGYWIILDELNLAPLPFLLYLL 378 (379)
Q Consensus 322 ~~~ph~~~~~~~g~~---~~~~~g~~~~~eg~l~~a~r~g~w~~ldelnlA~~~vl~~l~ 378 (379)
.+|.+..+..++|+. .+-.+|.++|..|.|.+| +|--|+|||||+++.++...||
T Consensus 108 ~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A--~~GiL~lDEInrL~~~~Q~~LL 165 (350)
T CHL00081 108 DLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKA--NRGILYVDEVNLLDDHLVDILL 165 (350)
T ss_pred ecCCCCchhhccCcccHHHHhhcCcccccCCeeeec--CCCEEEecChHhCCHHHHHHHH
Confidence 455666666689987 333468899999999976 7889999999999999988875
No 39
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=86.52 E-value=14 Score=39.41 Aligned_cols=51 Identities=10% Similarity=0.172 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC
Q psy1953 139 TNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190 (379)
Q Consensus 139 ~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~sEkf~~ELKK 190 (379)
.+.+..-+.++.+|+++.++|+.+++.+..+.++..+++++. |.+++.|+.
T Consensus 68 qSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeL-EaE~~~Lk~ 118 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKL-GQDNAALAE 118 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH-HHHHHHHHH
Confidence 344444445555566666666666654434433333444433 444445544
No 40
>PF06346 Drf_FH1: Formin Homology Region 1; InterPro: IPR009408 This domain is found in some of the Diaphanous related formins (Drfs) []. It consists of low complexity repeats of around 12 residues.
Probab=86.48 E-value=14 Score=33.69 Aligned_cols=8 Identities=63% Similarity=1.306 Sum_probs=3.0
Q ss_pred CCCCCCCC
Q psy1953 251 LPPHPRPG 258 (379)
Q Consensus 251 ppppp~p~ 258 (379)
++++++++
T Consensus 61 PpPppLPG 68 (160)
T PF06346_consen 61 PPPPPLPG 68 (160)
T ss_pred CCCCCCCC
Confidence 33333333
No 41
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=85.99 E-value=0.46 Score=45.56 Aligned_cols=37 Identities=19% Similarity=0.250 Sum_probs=29.4
Q ss_pred CceEEeechHHHHHHhcCcEEEEeccccCChhhhhhh
Q psy1953 341 TGQLVFQEGVLAKAMRLGYWIILDELNLAPLPFLLYL 377 (379)
Q Consensus 341 ~g~~~~~eg~l~~a~r~g~w~~ldelnlA~~~vl~~l 377 (379)
.-.+....-+|.-+...|.|+.+||+|..+.+||+.+
T Consensus 68 ~~~~~~l~ril~G~~~~GaW~cfdefnrl~~~vLS~i 104 (231)
T PF12774_consen 68 QMDYQSLSRILKGLAQSGAWLCFDEFNRLSEEVLSVI 104 (231)
T ss_dssp SS-HHHHHHHHHHHHHHT-EEEEETCCCSSHHHHHHH
T ss_pred cccHHHHHHHHHHHhhcCchhhhhhhhhhhHHHHHHH
Confidence 3445556677888889999999999999999999875
No 42
>PF06346 Drf_FH1: Formin Homology Region 1; InterPro: IPR009408 This domain is found in some of the Diaphanous related formins (Drfs) []. It consists of low complexity repeats of around 12 residues.
Probab=84.67 E-value=25 Score=32.18 Aligned_cols=9 Identities=56% Similarity=1.254 Sum_probs=3.7
Q ss_pred CCCCCCCCC
Q psy1953 250 MLPPHPRPG 258 (379)
Q Consensus 250 ~ppppp~p~ 258 (379)
.++++++++
T Consensus 72 iPPPPPLPG 80 (160)
T PF06346_consen 72 IPPPPPLPG 80 (160)
T ss_pred CCCCCCCCC
Confidence 334444444
No 43
>KOG0527|consensus
Probab=83.97 E-value=0.53 Score=47.81 Aligned_cols=39 Identities=10% Similarity=0.226 Sum_probs=31.8
Q ss_pred CCCCCchhhhhhhhhccc-cCCCcccccchhhHHHHHHHh
Q psy1953 9 GTSRQLQANCYGQSIGGC-SKIPQCNENNFSEYEKNLKAY 47 (379)
Q Consensus 9 ~~n~dl~lweigKiig~m-~~l~d~ek~~~~eY~~~~k~y 47 (379)
.+||||-==||+|.+|.+ +.|+|+||.+|+|=-|-|++-
T Consensus 83 ~qnP~mHNSEISK~LG~~WK~Lse~EKrPFi~EAeRLR~~ 122 (331)
T KOG0527|consen 83 KQNPKMHNSEISKRLGAEWKLLSEEEKRPFVDEAERLRAQ 122 (331)
T ss_pred HhCcchhhHHHHHHHHHHHhhcCHhhhccHHHHHHHHHHH
Confidence 578888888999999999 999999999998444444433
No 44
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=83.49 E-value=0.68 Score=50.21 Aligned_cols=57 Identities=25% Similarity=0.160 Sum_probs=46.2
Q ss_pred CCCCCCCCCCCC--Ccccc---cCCCCceEEeechHHHHHHhcCcEEEEeccccCChhhhhhhc
Q psy1953 320 PPHYPPHPGSQH--PHQNC---AHPETGQLVFQEGVLAKAMRLGYWIILDELNLAPLPFLLYLL 378 (379)
Q Consensus 320 ~~~~~ph~~~~~--~~g~~---~~~~~g~~~~~eg~l~~a~r~g~w~~ldelnlA~~~vl~~l~ 378 (379)
.+...+|++.++ ++|.. .+-..|+.+|..|.|..| .|--|+|||+|+++..|++.||
T Consensus 53 ~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~A--h~GvL~lDe~n~~~~~~~~aLl 114 (584)
T PRK13406 53 TPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEA--DGGVLVLAMAERLEPGTAARLA 114 (584)
T ss_pred CCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeec--cCCEEEecCcccCCHHHHHHHH
Confidence 566777888777 88887 233458989999999855 5678999999999999999987
No 45
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=82.95 E-value=0.48 Score=51.23 Aligned_cols=48 Identities=25% Similarity=0.120 Sum_probs=38.3
Q ss_pred CCCCcccc---cCCCCceEEeechHHHHHHhcCcEEEEeccccCChhhhhhhc
Q psy1953 329 SQHPHQNC---AHPETGQLVFQEGVLAKAMRLGYWIILDELNLAPLPFLLYLL 378 (379)
Q Consensus 329 ~~~~~g~~---~~~~~g~~~~~eg~l~~a~r~g~w~~ldelnlA~~~vl~~l~ 378 (379)
+..++|.. .+-.+|.|+|..|+|.+| +|-.|+|||||+++.++...||
T Consensus 55 ~d~L~G~idl~~~~~~g~~~~~~G~L~~A--~~GvL~lDEi~rl~~~~q~~Ll 105 (589)
T TIGR02031 55 EDRLIGGIDVEESLAGGQRVTQPGLLDEA--PRGVLYVDMANLLDDGLSNRLL 105 (589)
T ss_pred hhhcccchhhhhhhhcCcccCCCCCeeeC--CCCcEeccchhhCCHHHHHHHH
Confidence 34467764 123468999999999876 7889999999999999998876
No 46
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=82.90 E-value=5.6 Score=40.09 Aligned_cols=64 Identities=22% Similarity=0.315 Sum_probs=51.1
Q ss_pred ccccccccchHHHHHHHhcCCCCCCcc-chhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 108 HVAYARYLRNHRLINEIFSDSVVPDVR-SVVTTNR-MQVLKRQVQSLTMHQKKLEAELQQIEEKFE 171 (379)
Q Consensus 108 ~laaarfdRNhrLmsELfsd~vVpd~r-S~vt~dR-iq~LkkQVqsL~~eQeKLeaELqqlEeefq 171 (379)
.++...+|+..+||+++-.++.+++.. +.....+ |+.+..+|++...+|+.|..+|+..+.+|.
T Consensus 213 ~Lk~~~dDI~~~ll~~~~~~~~~~~e~l~~~eL~k~f~~~~~~i~~~~~~Q~~ll~~i~~~n~~f~ 278 (339)
T cd09235 213 ELKSATFDMKSKFLSALAQDGAINEEAISVEELDRVYGPLQKQVQESLSRQESLLANIQVAHQEFS 278 (339)
T ss_pred HHHhcccccHHHHHHHHHhcCCccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678899999999987677765433 2233444 999999999999999999999999999995
No 47
>KOG2893|consensus
Probab=82.61 E-value=21 Score=35.38 Aligned_cols=16 Identities=6% Similarity=0.216 Sum_probs=8.6
Q ss_pred ccCCCccccccccccc
Q psy1953 99 EQEDGYSVKHVAYARY 114 (379)
Q Consensus 99 D~dd~~S~k~laaarf 114 (379)
.+|+.|-+.|-++-.|
T Consensus 20 fddekiliqhqkakhf 35 (341)
T KOG2893|consen 20 FDDEKILIQHQKAKHF 35 (341)
T ss_pred cchhhhhhhhhhhccc
Confidence 4445566666555444
No 48
>KOG4672|consensus
Probab=82.13 E-value=5.5 Score=41.85 Aligned_cols=11 Identities=18% Similarity=0.205 Sum_probs=6.3
Q ss_pred hHHH-HHHHhhC
Q psy1953 39 EYEK-NLKAYHN 49 (379)
Q Consensus 39 eY~~-~~k~yhn 49 (379)
||-+ -|..||+
T Consensus 88 Etfer~~rlye~ 99 (487)
T KOG4672|consen 88 ETFERGKRLYEA 99 (487)
T ss_pred HHHHHHHHhhcc
Confidence 4444 5667775
No 49
>KOG4849|consensus
Probab=81.08 E-value=19 Score=37.42 Aligned_cols=6 Identities=0% Similarity=-0.440 Sum_probs=2.3
Q ss_pred CCCCCC
Q psy1953 303 PYYGNA 308 (379)
Q Consensus 303 ~~~~~~ 308 (379)
.+++..
T Consensus 334 ~~~~~~ 339 (498)
T KOG4849|consen 334 MNTAMR 339 (498)
T ss_pred CccCCC
Confidence 333333
No 50
>KOG4191|consensus
Probab=78.88 E-value=3.3 Score=43.89 Aligned_cols=65 Identities=22% Similarity=0.345 Sum_probs=38.0
Q ss_pred ccccccccccccchHHHHHHHhcCCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1953 104 YSVKHVAYARYLRNHRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVES 180 (379)
Q Consensus 104 ~S~k~laaarfdRNhrLmsELfsd~vVpd~rS~vt~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~ 180 (379)
||++|-.+ -+.||..+|...+++-+..--...+ ..+...+..+|.++|..+.++.+++|..+...
T Consensus 370 ~~~ph~~s----~E~RLK~eL~~~Gll~ded~pasdd--------dDEvlaeLR~lqaeLk~vS~~N~k~k~~Ll~l 434 (516)
T KOG4191|consen 370 FSVPHTKS----LESRLKEELIAQGLLEDEDRPASDD--------DDEVLAELRKLQAELKAVSAHNRKKKHDLLRL 434 (516)
T ss_pred ccCccccC----HHHHHHHHHHHhccccccCCCcccc--------hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 56666555 6789999999998886543111111 22444455556666666655555555444444
No 51
>KOG3771|consensus
Probab=78.33 E-value=77 Score=33.92 Aligned_cols=21 Identities=10% Similarity=-0.075 Sum_probs=12.3
Q ss_pred cccccccccccchHHHHHHHh
Q psy1953 105 SVKHVAYARYLRNHRLINEIF 125 (379)
Q Consensus 105 S~k~laaarfdRNhrLmsELf 125 (379)
..++-..+-+++++-|-.++.
T Consensus 83 ~g~~~l~~v~~~~d~l~~d~~ 103 (460)
T KOG3771|consen 83 PGRDYLQAVADNDDLLWKDLD 103 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHH
Confidence 334444456777777666665
No 52
>KOG2893|consensus
Probab=77.94 E-value=27 Score=34.70 Aligned_cols=6 Identities=50% Similarity=1.032 Sum_probs=2.5
Q ss_pred CCCCCC
Q psy1953 319 RPPHYP 324 (379)
Q Consensus 319 ~~~~~~ 324 (379)
|++-|.
T Consensus 228 ~~pp~~ 233 (341)
T KOG2893|consen 228 RTPPYE 233 (341)
T ss_pred CCCCcC
Confidence 344443
No 53
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=77.53 E-value=12 Score=35.77 Aligned_cols=57 Identities=12% Similarity=0.220 Sum_probs=42.1
Q ss_pred ccchHHHHHHHhcCCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 114 YLRNHRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKF 170 (379)
Q Consensus 114 fdRNhrLmsELfsd~vVpd~rS~vt~dRiq~LkkQVqsL~~eQeKLeaELqqlEeef 170 (379)
+..|.-|-+++|.+.++...........++.|...|-.+..++.++.+-|.....+.
T Consensus 22 iK~~~pf~t~lFd~~~~~~~s~q~~ee~F~~l~~sV~~m~~~i~~~n~fl~~~~~~~ 78 (205)
T PF12238_consen 22 IKENPPFKTSLFDETVLSNLSGQSDEEKFKSLFDSVPLMKHKISHMNAFLNDWPPHM 78 (205)
T ss_pred HccCCCCchhhhhHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCchhh
Confidence 556677788888887776555434455689999999999999999988888444443
No 54
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=76.43 E-value=2.6 Score=44.75 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=24.2
Q ss_pred ceEEeechHHH----HHHh---cCcEEEEeccccCChh
Q psy1953 342 GQLVFQEGVLA----KAMR---LGYWIILDELNLAPLP 372 (379)
Q Consensus 342 g~~~~~eg~l~----~a~r---~g~w~~ldelnlA~~~ 372 (379)
..|.|++|++. +|.+ .++||+|||||+|.-+
T Consensus 250 vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~ 287 (459)
T PRK11331 250 VGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLS 287 (459)
T ss_pred CCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHH
Confidence 45899999763 4443 4799999999999854
No 55
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=74.98 E-value=20 Score=33.51 Aligned_cols=56 Identities=13% Similarity=0.289 Sum_probs=34.6
Q ss_pred ccccchHHHHHHHhcCCCCCCccch--------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 112 ARYLRNHRLINEIFSDSVVPDVRSV--------------VTTNRMQVLKRQVQSLTMHQKKLEAELQQIE 167 (379)
Q Consensus 112 arfdRNhrLmsELfsd~vVpd~rS~--------------vt~dRiq~LkkQVqsL~~eQeKLeaELqqlE 167 (379)
....---.++..|++|+.|.-.+-+ ....++..|+++++++..+..+|+.+|+...
T Consensus 27 I~~~~VKdvlq~LvDDglV~~EKiGssn~YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~ 96 (188)
T PF03962_consen 27 IVSMSVKDVLQSLVDDGLVHVEKIGSSNYYWSFPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAK 96 (188)
T ss_pred CchhhHHHHHHHHhccccchhhhccCeeEEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444788999999999866522 1123366666666666666666666666543
No 56
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=71.85 E-value=2.1 Score=46.59 Aligned_cols=57 Identities=26% Similarity=0.267 Sum_probs=41.6
Q ss_pred CCCCCCCCCCCC--Cccccc---CCCCceEEeechHHHHHHhcCcEEEEeccccCChhhhhhhc
Q psy1953 320 PPHYPPHPGSQH--PHQNCA---HPETGQLVFQEGVLAKAMRLGYWIILDELNLAPLPFLLYLL 378 (379)
Q Consensus 320 ~~~~~ph~~~~~--~~g~~~---~~~~g~~~~~eg~l~~a~r~g~w~~ldelnlA~~~vl~~l~ 378 (379)
.+.+..|++..+ ++|+.. +-..|.++|..|.|.+| .|--|+|||||+++.+++..||
T Consensus 86 ~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A--~~GiL~lDEi~~l~~~~q~~Ll 147 (633)
T TIGR02442 86 VPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA--HRGILYIDEVNLLDDHLVDVLL 147 (633)
T ss_pred CCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec--CCCeEEeChhhhCCHHHHHHHH
Confidence 344445555443 788751 12358899999998754 5568999999999999998886
No 57
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=71.51 E-value=1.4e+02 Score=32.73 Aligned_cols=13 Identities=15% Similarity=-0.087 Sum_probs=8.2
Q ss_pred CcccccCCCCceE
Q psy1953 332 PHQNCAHPETGQL 344 (379)
Q Consensus 332 ~~g~~~~~~~g~~ 344 (379)
.+|..++..+|.|
T Consensus 286 Wl~r~a~AIeGVf 298 (582)
T PF03276_consen 286 WLGRNAPAIEGVF 298 (582)
T ss_pred hhhccchhhcccc
Confidence 4666666666666
No 58
>PHA03378 EBNA-3B; Provisional
Probab=71.45 E-value=96 Score=35.10 Aligned_cols=20 Identities=15% Similarity=0.180 Sum_probs=9.8
Q ss_pred ccccchHHHHHHHhcCCCCC
Q psy1953 112 ARYLRNHRLINEIFSDSVVP 131 (379)
Q Consensus 112 arfdRNhrLmsELfsd~vVp 131 (379)
.-|.|...+.+.---.+||.
T Consensus 399 ~vFlr~~~~k~~kk~rai~t 418 (991)
T PHA03378 399 KVFARKADLKSTKKCRAIVT 418 (991)
T ss_pred ceeeechhhhhhhhhheeec
Confidence 44777665554433233443
No 59
>KOG1925|consensus
Probab=69.51 E-value=13 Score=40.29 Aligned_cols=17 Identities=12% Similarity=0.141 Sum_probs=9.5
Q ss_pred CCcccCCCCCCCCCCCC
Q psy1953 205 SPVLTAPVSAQGPPPGP 221 (379)
Q Consensus 205 r~v~~a~~~~~~~~~~p 221 (379)
-..|.+..+-++.++.+
T Consensus 211 ~~~~~~~~~~R~~~~~~ 227 (817)
T KOG1925|consen 211 PAPCVLLRAQRSLAPEP 227 (817)
T ss_pred CchHHHHhhhhcCCCCC
Confidence 34466666666655543
No 60
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=68.08 E-value=2.3e+02 Score=32.54 Aligned_cols=16 Identities=31% Similarity=0.264 Sum_probs=9.8
Q ss_pred ceEEeechHHHHHHhc
Q psy1953 342 GQLVFQEGVLAKAMRL 357 (379)
Q Consensus 342 g~~~~~eg~l~~a~r~ 357 (379)
-.|.|..+.|.+.+.+
T Consensus 548 L~L~f~t~~la~~f~~ 563 (824)
T PRK07764 548 LVLGFSTGGLARRFAS 563 (824)
T ss_pred EEEecCCHHHHHHHhc
Confidence 3456666666666655
No 61
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=67.11 E-value=15 Score=34.41 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAK 173 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeK 173 (379)
|..|+....+|..+..++..+++.++.++.+.
T Consensus 129 i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~ 160 (189)
T PF10211_consen 129 IEELEEEKEELEKQVQELKNKCEQLEKREEEL 160 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444433
No 62
>PF06394 Pepsin-I3: Pepsin inhibitor-3-like repeated domain; InterPro: IPR010480 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The members of this group of proteins belong to MEROPS inhibitor family I33, clan IR; the nematode aspartyl protease inhibitors or Aspins. They are restricted to parasitic nematode species. Structural features common to the nematode Aspins include the presence of a signal peptide sequence and the conservation of all four cysteine residues in the mature protein. The Y[V.A]RDLT sequence motif has been suggested as being of crucial functional importance in several filarial nematode inhibitors [], this sequence is not conserved in Tco-API-1 from Trichostrongylus colubriformis (Black scour worm) and it has been demonstrated that Tco-API-1, is not an Aspin as it does not inhibit porcine pepsin []. Related inhibitors from Onchocerca volvulus, Ov33 [] and Ascaris suum (Pig roundworm), PI-3 [] inhibit the in vitro activity of aspartyl proteases such as pepsin and cathepsin E (MEROPS peptidase family A1). Aspin may facilitate the safe passage of the eggs of Ascaris through the host stomach without digestion by pepsin [, ]. The other parasitic nematodes known to express homologous proteins do not pass through the stomach of their hosts []. Several proteins in the family are potent allergens in mammals. The three-dimensional structures of pepsin inhibitor-3 (PI-3) from A. suum and of the complex between PI-3 and porcine pepsin at 1. 75 A and 2.45 A resolution, respectively, have revealed the mechanism of aspartic protease inhibition. PI-3 has a new fold consisting of two identical domains, each comprising an antiparallel beta-sheet flanked by an alpha-helix. In the enzyme-inhibitor complex, the N-terminal beta-strand of PI-3 pairs with one strand of the 'active site flap' (residues 70-82) of pepsin, thus forming an eight-stranded beta-sheet that spans the two proteins. PI-3 has a novel mode of inhibition, using its N-terminal residues to occupy and therefore block the first three binding pockets in pepsin for substrate residues C-terminal to the scissile bond (S1'-S3') [].; PDB: 1F32_A 1F34_B.
Probab=66.69 E-value=1.7 Score=35.47 Aligned_cols=26 Identities=19% Similarity=0.501 Sum_probs=21.0
Q ss_pred hccc--cCCCcccccchhhHHHHHHHhh
Q psy1953 23 IGGC--SKIPQCNENNFSEYEKNLKAYH 48 (379)
Q Consensus 23 ig~m--~~l~d~ek~~~~eY~~~~k~yh 48 (379)
||+. |||+.+|++++.+|++.|.+|.
T Consensus 32 vng~~~R~Lt~~E~~eL~~y~~~v~~y~ 59 (76)
T PF06394_consen 32 VNGKYARDLTPDEQQELKTYQKKVAAYK 59 (76)
T ss_dssp ETTCEEEE--HHHHHHHHHHHHHHHHHH
T ss_pred ECCEeeccCCHHHHHHHHHHHHHHHHHH
Confidence 5666 9999999999999999999885
No 63
>PRK11637 AmiB activator; Provisional
Probab=65.58 E-value=30 Score=35.72 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=16.0
Q ss_pred cccccccccccchHHHHHHHhc
Q psy1953 105 SVKHVAYARYLRNHRLINEIFS 126 (379)
Q Consensus 105 S~k~laaarfdRNhrLmsELfs 126 (379)
-+|.|+.-||-....++..|+-
T Consensus 9 ~~~~~~~~~~~~~~~~~~~ll~ 30 (428)
T PRK11637 9 MTRAVKPRRFAIRPILYASVLS 30 (428)
T ss_pred ccccccchhhhhhhHHHHHHHH
Confidence 4677888888887776666654
No 64
>PRK09039 hypothetical protein; Validated
Probab=65.18 E-value=15 Score=37.31 Aligned_cols=44 Identities=20% Similarity=0.319 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy1953 139 TNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSE 182 (379)
Q Consensus 139 ~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~sE 182 (379)
..++..|++|+..|..+...|+..|..++++..+.+.++.+...
T Consensus 136 ~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~ 179 (343)
T PRK09039 136 LAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGR 179 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34488888888888888888888888888877777766666643
No 65
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=62.88 E-value=52 Score=26.98 Aligned_cols=48 Identities=13% Similarity=0.308 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q psy1953 141 RMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEEL 188 (379)
Q Consensus 141 Riq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~sEkf~~EL 188 (379)
.-+.+..++++-..+...+...|-.+|..|..-|.+++++...+..+|
T Consensus 26 ~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eL 73 (79)
T PF08581_consen 26 QKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRREL 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667777777777888888999999988888888876666665
No 66
>KOG4590|consensus
Probab=61.29 E-value=38 Score=35.67 Aligned_cols=11 Identities=0% Similarity=0.292 Sum_probs=6.5
Q ss_pred HhcCCCCCCcc
Q psy1953 124 IFSDSVVPDVR 134 (379)
Q Consensus 124 Lfsd~vVpd~r 134 (379)
+++|.|+.+.+
T Consensus 48 VlnC~I~kGlk 58 (409)
T KOG4590|consen 48 VLNCLILKGLK 58 (409)
T ss_pred ccccccccCcc
Confidence 55566666555
No 67
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=60.82 E-value=18 Score=29.69 Aligned_cols=28 Identities=25% Similarity=0.589 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 150 QSLTMHQKKLEAELQQIEEKFEAKKRKF 177 (379)
Q Consensus 150 qsL~~eQeKLeaELqqlEeefqeKKrK~ 177 (379)
.++..++.+|..+|++++++.++.++.|
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~~~~ 30 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNKREF 30 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3566667777777777776666655443
No 68
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=60.33 E-value=68 Score=25.77 Aligned_cols=32 Identities=16% Similarity=0.320 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q psy1953 140 NRMQVLKRQVQSLTMH-------QKKLEAELQQIEEKFE 171 (379)
Q Consensus 140 dRiq~LkkQVqsL~~e-------QeKLeaELqqlEeefq 171 (379)
+.|..|+..+..|+.+ +..|..+.+++.+++.
T Consensus 18 eti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~ 56 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELKEENEELKEENEQLKQERN 56 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555544444 4444444444444443
No 69
>PHA03378 EBNA-3B; Provisional
Probab=59.96 E-value=1.8e+02 Score=33.14 Aligned_cols=11 Identities=9% Similarity=0.057 Sum_probs=4.9
Q ss_pred hhhhhhhhccc
Q psy1953 16 ANCYGQSIGGC 26 (379)
Q Consensus 16 lweigKiig~m 26 (379)
|-+|++-+-.+
T Consensus 259 lvss~rSL~~I 269 (991)
T PHA03378 259 LVSSGNTLYAI 269 (991)
T ss_pred HHhhcccHHHH
Confidence 34444444444
No 70
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=58.43 E-value=45 Score=31.01 Aligned_cols=31 Identities=13% Similarity=0.252 Sum_probs=19.9
Q ss_pred CccCCCccccccccccccchHHHHHHHhcCCCCC
Q psy1953 98 DEQEDGYSVKHVAYARYLRNHRLINEIFSDSVVP 131 (379)
Q Consensus 98 dD~dd~~S~k~laaarfdRNhrLmsELfsd~vVp 131 (379)
.|..|++|.+- ..|+.-=+.++.+|.++=++
T Consensus 72 KD~Se~~S~~K---~Pf~~~~k~~~~ifkegg~d 102 (163)
T PF03233_consen 72 KDPSEGLSKSK---SPFESFFKDLSKIFKEGGGD 102 (163)
T ss_pred cCCccccccCC---CcHHHHHHHHHHHHHhcCCc
Confidence 35566788876 45555556678888875433
No 71
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=57.18 E-value=2e+02 Score=31.18 Aligned_cols=16 Identities=13% Similarity=0.090 Sum_probs=8.7
Q ss_pred ceEEeechHHHHHHhc
Q psy1953 342 GQLVFQEGVLAKAMRL 357 (379)
Q Consensus 342 g~~~~~eg~l~~a~r~ 357 (379)
..+.|..|.+.+.+..
T Consensus 503 l~l~~~~~~~~~~~~~ 518 (585)
T PRK14950 503 LTLSFKSKFHKDKIEE 518 (585)
T ss_pred EEEecCcHHHHHHhhc
Confidence 3445666666555443
No 72
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.88 E-value=46 Score=33.13 Aligned_cols=33 Identities=12% Similarity=0.391 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKK 174 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKK 174 (379)
|..+.+.++.+..+.+.|.++++.+..+..+.+
T Consensus 40 l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~ 72 (265)
T COG3883 40 LSELQKEKKNIQNEIESLDNQIEEIQSKIDELQ 72 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444333333333
No 73
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=56.74 E-value=59 Score=32.02 Aligned_cols=19 Identities=21% Similarity=0.398 Sum_probs=8.6
Q ss_pred hhhhhccccCCCcccccch
Q psy1953 19 YGQSIGGCSKIPQCNENNF 37 (379)
Q Consensus 19 igKiig~m~~l~d~ek~~~ 37 (379)
|=.+||.+.=|--+-|-.|
T Consensus 17 IVR~IGt~LPL~pcpR~~F 35 (253)
T PF05308_consen 17 IVRRIGTNLPLKPCPRPHF 35 (253)
T ss_pred HHHHHhccCCCCCCCCcee
Confidence 3345555544444444444
No 74
>PHA03046 Hypothetical protein; Provisional
Probab=56.69 E-value=1.3e+02 Score=27.18 Aligned_cols=71 Identities=18% Similarity=0.287 Sum_probs=49.8
Q ss_pred ccccccchHHHHHHHhcCCCCCCccchhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1953 110 AYARYLRNHRLINEIFSDSVVPDVRSVVT--TNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVES 180 (379)
Q Consensus 110 aaarfdRNhrLmsELfsd~vVpd~rS~vt--~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~ 180 (379)
+..+|-....=++.++.|.-+++..+.+. ..|+..|.+-.+.+...++.+.+-|.++|.-...-.+.+...
T Consensus 59 kY~~f~i~eddisdILkDsFI~~d~~~iKd~vlRL~vlEK~~~~~i~~c~~~~~~i~RLE~H~ETlRk~Ml~L 131 (142)
T PHA03046 59 KYSTFPIHEDDISDILKDSFIHKDEMDIKDFVLRLLVLEKLFQLSIKRCKSLNNIIKRLENHTETVRKNMITL 131 (142)
T ss_pred cCCCCcccHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567667777888888888887665443 477888888788888888888888888876655444444444
No 75
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=56.47 E-value=66 Score=28.10 Aligned_cols=49 Identities=27% Similarity=0.453 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEEL 188 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~sEkf~~EL 188 (379)
..+..++.++.++......|+.+++.+...+.+.+..|.+....+.+++
T Consensus 59 ~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~ 107 (132)
T PF07926_consen 59 KELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKEL 107 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4466666666666666666666666666666666666655543333333
No 76
>smart00338 BRLZ basic region leucin zipper.
Probab=56.19 E-value=47 Score=25.32 Aligned_cols=37 Identities=22% Similarity=0.476 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 139 TNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKR 175 (379)
Q Consensus 139 ~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKr 175 (379)
...++.|..+++.|..+++.|..++..++.+....+.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3458888888888888888888888888887765543
No 77
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=55.51 E-value=47 Score=33.54 Aligned_cols=69 Identities=14% Similarity=0.229 Sum_probs=42.8
Q ss_pred cccccccccccchHHHHHHHhcCCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 105 SVKHVAYARYLRNHRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKK 174 (379)
Q Consensus 105 S~k~laaarfdRNhrLmsELfsd~vVpd~rS~vt~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKK 174 (379)
|.+.++..--+-..+|..++++-+-+.++++ ...-+++.|++++.++......+..++.....++...|
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~-~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K 146 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKS-ALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQK 146 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566655555666777778887777776664 22345777777777777666666666554444443333
No 78
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=55.08 E-value=52 Score=32.41 Aligned_cols=40 Identities=20% Similarity=0.431 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVE 179 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E 179 (379)
.++..++.+++++..+++.|..++..++.++.+...++++
T Consensus 135 e~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~ 174 (290)
T COG4026 135 EDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKR 174 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3488889999999999999999998888888765544443
No 79
>KOG2675|consensus
Probab=55.01 E-value=27 Score=37.20 Aligned_cols=33 Identities=9% Similarity=0.155 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC
Q psy1953 158 KLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190 (379)
Q Consensus 158 KLeaELqqlEeefqeKKrK~~E~sEkf~~ELKK 190 (379)
+...|-......|.|=.+.|.+...++++=+|.
T Consensus 173 rvLkEyk~~D~~hveWvKa~l~l~~eL~~YVk~ 205 (480)
T KOG2675|consen 173 RVLKEYKEKDPRHVEWVKAYLALFLELQAYVKE 205 (480)
T ss_pred HHHHHhccCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555565555444443333
No 80
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=54.50 E-value=87 Score=25.17 Aligned_cols=30 Identities=20% Similarity=0.288 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFE 171 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefq 171 (379)
+..|..+|+.+...+..|+.++..++++..
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~ 35 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNN 35 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555433
No 81
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=53.81 E-value=38 Score=29.92 Aligned_cols=20 Identities=35% Similarity=0.449 Sum_probs=8.6
Q ss_pred HHHHHhcCCCCCchhhhhhh
Q psy1953 183 QFQEELKKPGMGPEGYLNRL 202 (379)
Q Consensus 183 kf~~ELKK~~vdeE~~~~~l 202 (379)
.+..|+||.....+++.++|
T Consensus 130 q~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 130 QYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444444443444444443
No 82
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=53.65 E-value=1e+02 Score=24.47 Aligned_cols=50 Identities=18% Similarity=0.167 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHhc
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVES---SEQFQEELK 189 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~---sEkf~~ELK 189 (379)
++++.|-...+.|..++..|..++..+..+....+.|.... .|+++..||
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk 59 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLK 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 55777777788888888888888888887776655555444 355555555
No 83
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=53.59 E-value=40 Score=25.96 Aligned_cols=28 Identities=18% Similarity=0.344 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEK 169 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEee 169 (379)
+..++.+++++..+.+++..+.+.++++
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~e 46 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEE 46 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444433
No 84
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.45 E-value=58 Score=32.49 Aligned_cols=41 Identities=17% Similarity=0.370 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVES 180 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~ 180 (379)
..++.|..||.++..++.++.+++.+.+++....+.+|.+.
T Consensus 52 ~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~ 92 (265)
T COG3883 52 NEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAEL 92 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566666666666555555555555555554444444444
No 85
>KOG4360|consensus
Probab=52.93 E-value=51 Score=35.87 Aligned_cols=71 Identities=20% Similarity=0.291 Sum_probs=44.1
Q ss_pred ccchHHHHHHHhcCCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Q psy1953 114 YLRNHRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELK 189 (379)
Q Consensus 114 fdRNhrLmsELfsd~vVpd~rS~vt~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~sEkf~~ELK 189 (379)
++-|.+||+.|.+- +++-....-..+.++..++.....+..+.+|+..++.++.+..+.+.|. |+..++|+
T Consensus 232 ~Ee~skLlsql~d~----qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~Ea-eeELk~lr 302 (596)
T KOG4360|consen 232 QEENSKLLSQLVDL----QKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEA-EEELKCLR 302 (596)
T ss_pred HHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhc
Confidence 45566666666641 1111111223566677777777778888888888888888877666655 54455553
No 86
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=52.50 E-value=56 Score=28.50 Aligned_cols=24 Identities=13% Similarity=0.234 Sum_probs=18.5
Q ss_pred cccccccchHHHHHHHhcCCCCCC
Q psy1953 109 VAYARYLRNHRLINEIFSDSVVPD 132 (379)
Q Consensus 109 laaarfdRNhrLmsELfsd~vVpd 132 (379)
+++..+.+-.+|+.+|+..+-++-
T Consensus 18 ~~a~~~ek~~klvDelVkkGeln~ 41 (108)
T COG3937 18 LAAETAEKVQKLVDELVKKGELNA 41 (108)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCH
Confidence 445667788899999999887763
No 87
>KOG1962|consensus
Probab=52.27 E-value=41 Score=32.60 Aligned_cols=48 Identities=31% Similarity=0.542 Sum_probs=25.7
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC
Q psy1953 142 MQVLKRQVQS---LTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190 (379)
Q Consensus 142 iq~LkkQVqs---L~~eQeKLeaELqqlEeefqeKKrK~~E~sEkf~~ELKK 190 (379)
...+++++.. ++.++.++.++++.++++.+++..+++.. ++-...|+|
T Consensus 136 ~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~-~~~~~al~K 186 (216)
T KOG1962|consen 136 NEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKA-QKKVDALKK 186 (216)
T ss_pred HHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3444444433 34455666666666666666666555554 344444444
No 88
>KOG0526|consensus
Probab=52.19 E-value=8 Score=41.89 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=31.7
Q ss_pred Cchhhhhhhhhccc-cCCCcccccchh------hHHHHHHHhhCCH
Q psy1953 13 QLQANCYGQSIGGC-SKIPQCNENNFS------EYEKNLKAYHNSP 51 (379)
Q Consensus 13 dl~lweigKiig~m-~~l~d~ek~~~~------eY~~~~k~yhnSp 51 (379)
...+-||+|..|.| +.+++.++|+-- +|++.||.|.|..
T Consensus 558 gi~~~dv~kk~g~~wk~ms~k~~we~ka~~dk~ry~~em~~yk~g~ 603 (615)
T KOG0526|consen 558 GISVGDVAKKAGEKWKQMSAKEEWEDKAAVDKQRYEDEMKEYKNGQ 603 (615)
T ss_pred CchHHHHHHHHhHHHhhhcccchhhHHHHHHHHHHHHHHHhhcCCC
Confidence 56688999999999 999995555422 8999999999763
No 89
>KOG0241|consensus
Probab=51.78 E-value=24 Score=41.13 Aligned_cols=42 Identities=12% Similarity=0.261 Sum_probs=28.8
Q ss_pred ccccCCCCCchhhhhhhhhccc-cCCCcccccchhhHHHHHHH
Q psy1953 5 QFQNGTSRQLQANCYGQSIGGC-SKIPQCNENNFSEYEKNLKA 46 (379)
Q Consensus 5 ~f~~~~n~dl~lweigKiig~m-~~l~d~ek~~~~eY~~~~k~ 46 (379)
.|+++-|-.--|--+|.+|... ..-.+..|.-|+=|..++-.
T Consensus 267 rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLT 309 (1714)
T KOG0241|consen 267 RLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLT 309 (1714)
T ss_pred hhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHH
Confidence 4666666665577778888888 55566666777777766543
No 90
>KOG3091|consensus
Probab=51.72 E-value=39 Score=36.42 Aligned_cols=65 Identities=17% Similarity=0.228 Sum_probs=46.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC----CCCCchhhhhhh
Q psy1953 137 VTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK----PGMGPEGYLNRL 202 (379)
Q Consensus 137 vt~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~sEkf~~ELKK----~~vdeE~~~~~l 202 (379)
....||..+...|.+|..++...-.+|.++..|+.+.-.++.+..-+ ++-|++ -..|||++.++|
T Consensus 352 ~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ik-qeilr~~G~~L~~~EE~Lr~Kl 420 (508)
T KOG3091|consen 352 QHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIK-QEILRKRGYALTPDEEELRAKL 420 (508)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccCCcCCccHHHHHHHH
Confidence 34566888888888888888888889999888888888888777432 233444 445566666543
No 91
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=50.89 E-value=78 Score=29.30 Aligned_cols=66 Identities=15% Similarity=0.205 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCCchhhhhhhcc
Q psy1953 139 TNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKKPGMGPEGYLNRLSA 204 (379)
Q Consensus 139 ~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~sEkf~~ELKK~~vdeE~~~~~l~~ 204 (379)
...|..|..++.....+...+..+|.....+.....+.|....++....|+....+.++++++|.+
T Consensus 109 ~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~ 174 (184)
T PF05791_consen 109 KEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIEN 174 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHH
Confidence 355788888888888888888888888888888888888888878778787766777777766653
No 92
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=50.17 E-value=1.4e+02 Score=26.78 Aligned_cols=53 Identities=23% Similarity=0.313 Sum_probs=37.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC
Q psy1953 137 VTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190 (379)
Q Consensus 137 vt~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~sEkf~~ELKK 190 (379)
.....++.++..+...+...++|+.++..-..+....+.++.+. ...+..|.+
T Consensus 77 ~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~-~~~n~~Lek 129 (131)
T PF04859_consen 77 RLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDEL-NRANKSLEK 129 (131)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhc
Confidence 34456777777777777778888888888888877777666666 555665543
No 93
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=49.65 E-value=98 Score=30.53 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q psy1953 155 HQKKLEAELQQIEEK 169 (379)
Q Consensus 155 eQeKLeaELqqlEee 169 (379)
+++-|+.||.++.+.
T Consensus 123 KIsALEdELs~LRaQ 137 (253)
T PF05308_consen 123 KISALEDELSRLRAQ 137 (253)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555544433
No 94
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=49.55 E-value=47 Score=31.31 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=12.4
Q ss_pred hHHHHHHHhhCCHHHHHHHHH
Q psy1953 39 EYEKNLKAYHNSPQYLAYMAA 59 (379)
Q Consensus 39 eY~~~~k~yhnSpay~ayi~a 59 (379)
||-+-.|..=++|-|.-.++.
T Consensus 16 E~mevfk~vPQ~PHF~pL~~~ 36 (190)
T PF05266_consen 16 ESMEVFKKVPQSPHFSPLQEF 36 (190)
T ss_pred HHHHHHHcCCCCCCChhhhcC
Confidence 666666666666666554433
No 95
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.48 E-value=2.4e+02 Score=30.67 Aligned_cols=15 Identities=27% Similarity=0.448 Sum_probs=7.4
Q ss_pred HHHHhHHHHHHHhcC
Q psy1953 176 KFVESSEQFQEELKK 190 (379)
Q Consensus 176 K~~E~sEkf~~ELKK 190 (379)
++.+........+|.
T Consensus 329 ~~l~~l~~~D~~lK~ 343 (585)
T PRK14950 329 KWVKAFSQLDFQLRT 343 (585)
T ss_pred HHHHHHHHHHHHHhc
Confidence 334444455555665
No 96
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=48.99 E-value=91 Score=31.11 Aligned_cols=60 Identities=7% Similarity=0.121 Sum_probs=35.4
Q ss_pred HHHHHHhcCCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 119 RLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFV 178 (379)
Q Consensus 119 rLmsELfsd~vVpd~rS~vt~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~ 178 (379)
.....|+..+++....-......+..++..+.++..+...+..++..++.++...+..+.
T Consensus 182 ~~~~~L~~~g~is~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 241 (423)
T TIGR01843 182 EARRKLKEKGLVSRLELLELERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFR 241 (423)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666777776643322334446667777777777777777777666666554444333
No 97
>KOG2010|consensus
Probab=48.63 E-value=1.8e+02 Score=30.24 Aligned_cols=26 Identities=12% Similarity=0.124 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 141 RMQVLKRQVQSLTMHQKKLEAELQQI 166 (379)
Q Consensus 141 Riq~LkkQVqsL~~eQeKLeaELqql 166 (379)
.+..+..|+.....+.+++..|+++.
T Consensus 155 ~LeE~eeqLaeS~Re~eek~kE~er~ 180 (405)
T KOG2010|consen 155 VLEEQEEQLAESYRENEEKSKELERQ 180 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555555543
No 98
>PF03028 Dynein_heavy: Dynein heavy chain and region D6 of dynein motor; InterPro: IPR004273 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits, intermediate size subunits and small subunits (see IPR001372 from INTERPRO). This family represents the C-terminal region of dynein heavy chain. The dynein heavy chain also exhibits ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. ; GO: 0003777 microtubule motor activity, 0007018 microtubule-based movement, 0030286 dynein complex; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=46.97 E-value=12 Score=41.04 Aligned_cols=26 Identities=35% Similarity=0.600 Sum_probs=23.8
Q ss_pred eechHHHHHHhcCcEEEEeccccCCh
Q psy1953 346 FQEGVLAKAMRLGYWIILDELNLAPL 371 (379)
Q Consensus 346 ~~eg~l~~a~r~g~w~~ldelnlA~~ 371 (379)
..+-.|.+|+++|+||+|..+.|+++
T Consensus 159 ~a~~~l~~a~~~G~Wv~L~N~HL~~~ 184 (707)
T PF03028_consen 159 EAEKALKEAAKEGHWVLLQNCHLAPS 184 (707)
T ss_dssp HHHHHHHHHHHHTSEEEEETGGGGCC
T ss_pred HHHHHHHHHhcCCeEEEcccchhHHH
Confidence 56888999999999999999999986
No 99
>PRK14162 heat shock protein GrpE; Provisional
Probab=45.78 E-value=99 Score=29.38 Aligned_cols=43 Identities=14% Similarity=0.359 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1953 139 TNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESS 181 (379)
Q Consensus 139 ~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~s 181 (379)
.+++..++.++..+..+.+++...+.++.++|..-+++..++.
T Consensus 38 ~~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~ 80 (194)
T PRK14162 38 QNPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKER 80 (194)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557777778888888888888888888888877666666553
No 100
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=45.75 E-value=44 Score=27.43 Aligned_cols=33 Identities=33% Similarity=0.468 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKK 174 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKK 174 (379)
+..+.+....|+++..||+++|++...+|+=++
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~~qIk~ 34 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKREFQIKE 34 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 345666777888999999999998888876443
No 101
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=45.66 E-value=39 Score=35.48 Aligned_cols=24 Identities=21% Similarity=0.099 Sum_probs=17.2
Q ss_pred CccccccccccccchHHHHHHHhc
Q psy1953 103 GYSVKHVAYARYLRNHRLINEIFS 126 (379)
Q Consensus 103 ~~S~k~laaarfdRNhrLmsELfs 126 (379)
.+-.|.+...-|..-|-|..|+.+
T Consensus 244 Sii~R~Ld~~~y~ly~~l~~el~s 267 (442)
T PF06637_consen 244 SIIPRSLDNLGYSLYHPLGPELES 267 (442)
T ss_pred HHHhhhhhcCCcccCCCCcchHHH
Confidence 456677777777777777777766
No 102
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=45.26 E-value=75 Score=31.89 Aligned_cols=38 Identities=16% Similarity=0.351 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKF 177 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~ 177 (379)
..+..++.++.++..+.+....+|..++.+.++.+.++
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i 246 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKI 246 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666555555555544444444444444444333
No 103
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=45.17 E-value=80 Score=26.38 Aligned_cols=39 Identities=21% Similarity=0.419 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVES 180 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~ 180 (379)
+..|.+++..+....+++..+++.++.++.+.+.++.+.
T Consensus 65 ~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 65 RTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666667777777777777777777777666666554
No 104
>PRK14139 heat shock protein GrpE; Provisional
Probab=45.03 E-value=95 Score=29.26 Aligned_cols=39 Identities=13% Similarity=0.219 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVES 180 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~ 180 (379)
+..++.++..++.+..++...+.++..+|..-+++..++
T Consensus 34 ~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE 72 (185)
T PRK14139 34 APALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQED 72 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666666666666666666666555554444
No 105
>KOG0119|consensus
Probab=44.71 E-value=3e+02 Score=30.12 Aligned_cols=17 Identities=29% Similarity=0.559 Sum_probs=10.5
Q ss_pred CCCCCCCCCCCCCCCCC
Q psy1953 293 PYPYPQYPTHPYYGNAY 309 (379)
Q Consensus 293 ~~p~~~~~~~~~~~~~~ 309 (379)
+||+-+|.+|+-++++|
T Consensus 439 ~~Pp~~~~~p~~~~~pp 455 (554)
T KOG0119|consen 439 AYPPTSYAPPPQSGQPP 455 (554)
T ss_pred CCCCccCCCCCccCCCC
Confidence 35556666666666666
No 106
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=44.42 E-value=1.1e+02 Score=23.19 Aligned_cols=35 Identities=23% Similarity=0.455 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKK 174 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKK 174 (379)
..++.|..++..|..++..|..++..+..+....+
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33777777777777777777777777776665433
No 107
>PRK02119 hypothetical protein; Provisional
Probab=44.12 E-value=1.2e+02 Score=24.38 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 144 VLKRQVQSLTMHQKKLEAELQQIEEKF 170 (379)
Q Consensus 144 ~LkkQVqsL~~eQeKLeaELqqlEeef 170 (379)
.+..++.+|+.+..-.+..|+.+++..
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v 32 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQAL 32 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555444444444444443
No 108
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=43.64 E-value=80 Score=31.90 Aligned_cols=44 Identities=20% Similarity=0.375 Sum_probs=36.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1953 137 VTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVES 180 (379)
Q Consensus 137 vt~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~ 180 (379)
-....|+.|..|+..|.+++..-.-.|+-+|+.++..|++.++.
T Consensus 15 ~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~e 58 (307)
T PF10481_consen 15 RALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEE 58 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44677999999999999998888888888888888777777666
No 109
>PRK13531 regulatory ATPase RavA; Provisional
Probab=43.51 E-value=11 Score=40.56 Aligned_cols=44 Identities=25% Similarity=0.266 Sum_probs=31.4
Q ss_pred CCcccc--cC-CCCceEE-eechHHHHHHhcCcEEEEeccccCChhhhhhhc
Q psy1953 331 HPHQNC--AH-PETGQLV-FQEGVLAKAMRLGYWIILDELNLAPLPFLLYLL 378 (379)
Q Consensus 331 ~~~g~~--~~-~~~g~~~-~~eg~l~~a~r~g~w~~ldelnlA~~~vl~~l~ 378 (379)
.++|.. .. ...|+|. +..|.|..|- -|+|||||.++..++..||
T Consensus 81 DLfG~l~i~~~~~~g~f~r~~~G~L~~A~----lLfLDEI~rasp~~QsaLL 128 (498)
T PRK13531 81 EVFGPLSIQALKDEGRYQRLTSGYLPEAE----IVFLDEIWKAGPAILNTLL 128 (498)
T ss_pred HhcCcHHHhhhhhcCchhhhcCCcccccc----EEeecccccCCHHHHHHHH
Confidence 456743 22 2357774 6777654442 8999999999999999887
No 110
>PRK14161 heat shock protein GrpE; Provisional
Probab=43.48 E-value=94 Score=29.05 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 141 RMQVLKRQVQSLTMHQKKLEAELQ 164 (379)
Q Consensus 141 Riq~LkkQVqsL~~eQeKLeaELq 164 (379)
++..|++++.++..+..++.++++
T Consensus 27 ei~~l~~e~~elkd~~lR~~Aefe 50 (178)
T PRK14161 27 EITALKAEIEELKDKLIRTTAEID 50 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455554444444444444443
No 111
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=43.37 E-value=91 Score=28.08 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQ 165 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqq 165 (379)
+..|+.++.++..+.+.|+.+|..
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~ 104 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELAS 104 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555444443
No 112
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=43.37 E-value=1e+02 Score=30.25 Aligned_cols=52 Identities=23% Similarity=0.493 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC
Q psy1953 139 TNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190 (379)
Q Consensus 139 ~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~sEkf~~ELKK 190 (379)
.++...|..++.++....++|+.++..+..++...++.+.+..+.+..+++.
T Consensus 102 k~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~ 153 (239)
T COG1579 102 KERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAE 153 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666677777766666666666665555554444444433
No 113
>KOG0307|consensus
Probab=43.27 E-value=3.7e+02 Score=31.81 Aligned_cols=24 Identities=17% Similarity=0.105 Sum_probs=16.9
Q ss_pred hHHHHHHHhhCCHHHHHHHHHHHHhHHh
Q psy1953 39 EYEKNLKAYHNSPQYLAYMAAKAKGKQA 66 (379)
Q Consensus 39 eY~~~~k~yhnSpay~ayi~aK~ra~~~ 66 (379)
+|++++|.- -|..|++.|.-+...
T Consensus 397 ~l~~alk~~----~l~~~c~kk~~~~~~ 420 (1049)
T KOG0307|consen 397 ALSLALKDA----NLGDYCEKKLVESES 420 (1049)
T ss_pred HHHHhhccc----hHHHHHHHHhhhhhh
Confidence 677777765 577888877766553
No 114
>PRK14143 heat shock protein GrpE; Provisional
Probab=42.76 E-value=1e+02 Score=30.08 Aligned_cols=43 Identities=16% Similarity=0.381 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1953 139 TNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESS 181 (379)
Q Consensus 139 ~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~s 181 (379)
..++..|+.++..+..+.+++...+.++.++|..-+++..++.
T Consensus 66 ~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~ 108 (238)
T PRK14143 66 AARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQ 108 (238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777888888888888888888888888876666665553
No 115
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=42.70 E-value=1.1e+02 Score=32.96 Aligned_cols=12 Identities=8% Similarity=0.299 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLT 153 (379)
Q Consensus 142 iq~LkkQVqsL~ 153 (379)
...|++|+..+.
T Consensus 78 asELEKqLaaLr 89 (475)
T PRK13729 78 AAQMQKQYEEIR 89 (475)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 116
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=41.65 E-value=49 Score=24.32 Aligned_cols=28 Identities=39% Similarity=0.544 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEK 169 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEee 169 (379)
|+.|+.....|..++++|.+++..+..+
T Consensus 14 yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 14 YDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444445555555555554444433
No 117
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (
Probab=41.31 E-value=73 Score=30.69 Aligned_cols=134 Identities=16% Similarity=0.244 Sum_probs=66.6
Q ss_pred HHHHhhCCHHHHHHHHHHHHhHHhHHHHHHHHHHhhcCCCCCCCCcceecccCCCCccCCCccccccccccccchHHHHH
Q psy1953 43 NLKAYHNSPQYLAYMAAKAKGKQAQQAAEEREAQAQGFSGKNADRRIDIQPAEDEDEQEDGYSVKHVAYARYLRNHRLIN 122 (379)
Q Consensus 43 ~~k~yhnSpay~ayi~aK~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~iqpaeD~dD~dd~~S~k~laaarfdRNhrLms 122 (379)
..|-|..+=+|.+-|++...+.....+.-. .--.. ..++.-..+-+.+ ++| . ..+.+...--+..-..|.
T Consensus 28 ~~kL~Ke~K~Y~~av~~M~~~q~~~se~l~-e~Y~~-----~~~~~~~~~~v~e--~~d-~-~~~~~~~~~~~~vL~pi~ 97 (211)
T cd07612 28 GNRLYKDLKAYLNAVKVMHESSKRLSQTLQ-DIYEP-----DWDGHEDLGAIVE--GED-L-LWNDYEAKLHDQALRTME 97 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCC-----CcCcccHHHHHHh--ccH-H-HHHHHHHHHHHHHHHHHH
Confidence 455666777788878877777765322111 11100 0011111221111 111 1 222222222222334444
Q ss_pred HHhcCCCCCCccchhh-hhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q psy1953 123 EIFSDSVVPDVRSVVT-TNR----MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEEL 188 (379)
Q Consensus 123 ELfsd~vVpd~rS~vt-~dR----iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~sEkf~~EL 188 (379)
.+.+ ++++.+..+. +.+ |+..+.++..|....++-..+|.++++++..-+..|+..=+.+.+||
T Consensus 98 ~~~s--~f~~i~~~i~KR~~KllDYD~~R~~~~kl~~k~~kD~~KL~kAe~el~~Ak~~ye~lN~~L~~EL 166 (211)
T cd07612 98 SYMA--QFPDVKERVAKRGRKLVDYDSARHHLEALQNAKKKDDAKIAKAEEEFNRAQVVFEDINRELREEL 166 (211)
T ss_pred HHHH--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 4555553332 222 66677777777776666677888888888776666655544555555
No 118
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=41.21 E-value=1.4e+02 Score=27.15 Aligned_cols=40 Identities=18% Similarity=0.379 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESS 181 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~s 181 (379)
+..|++++..|.....++.++|..+..+.....+...+..
T Consensus 96 ie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~ 135 (145)
T COG1730 96 IEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQ 135 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999988888776665555554
No 119
>KOG1925|consensus
Probab=40.98 E-value=34 Score=37.28 Aligned_cols=8 Identities=50% Similarity=0.630 Sum_probs=4.1
Q ss_pred hHHHHHHH
Q psy1953 39 EYEKNLKA 46 (379)
Q Consensus 39 eY~~~~k~ 46 (379)
.|+..||-
T Consensus 48 ~~~N~L~L 55 (817)
T KOG1925|consen 48 LYENALKL 55 (817)
T ss_pred hhhhhhhh
Confidence 45555553
No 120
>PRK04406 hypothetical protein; Provisional
Probab=40.91 E-value=1.6e+02 Score=23.83 Aligned_cols=29 Identities=10% Similarity=0.307 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 143 QVLKRQVQSLTMHQKKLEAELQQIEEKFE 171 (379)
Q Consensus 143 q~LkkQVqsL~~eQeKLeaELqqlEeefq 171 (379)
..+..++.+|+.+.+-++.-|+.+++..-
T Consensus 7 ~~le~Ri~~LE~~lAfQE~tIe~LN~~v~ 35 (75)
T PRK04406 7 EQLEERINDLECQLAFQEQTIEELNDALS 35 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666555555555555554433
No 121
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=40.85 E-value=1.3e+02 Score=28.92 Aligned_cols=20 Identities=25% Similarity=0.514 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEA 161 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLea 161 (379)
|..++++++.|...+++++.
T Consensus 58 ~~~l~~e~e~L~~~~~~l~~ 77 (251)
T PF11932_consen 58 YRQLEREIENLEVYNEQLER 77 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 122
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=40.54 E-value=1.1e+02 Score=34.13 Aligned_cols=12 Identities=0% Similarity=-0.044 Sum_probs=10.5
Q ss_pred cCCCcccccchh
Q psy1953 27 SKIPQCNENNFS 38 (379)
Q Consensus 27 ~~l~d~ek~~~~ 38 (379)
+||+-+||+.|+
T Consensus 320 ~dLsveEK~~~~ 331 (652)
T COG2433 320 RDLSVEEKQEAL 331 (652)
T ss_pred ccCCHHHHHHHH
Confidence 799999999866
No 123
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=40.52 E-value=99 Score=24.15 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy1953 149 VQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQF 184 (379)
Q Consensus 149 VqsL~~eQeKLeaELqqlEeefqeKKrK~~E~sEkf 184 (379)
|.+|...+.-|++||.++++....|+ ......|.|
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~-a~r~AAeal 57 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKS-ASRAAAEAL 57 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 45677777778888888888766544 333333444
No 124
>PRK14158 heat shock protein GrpE; Provisional
Probab=40.46 E-value=1.4e+02 Score=28.35 Aligned_cols=42 Identities=7% Similarity=0.135 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESS 181 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~s 181 (379)
..+..++.++..+..+..++...+.++.++|..-+++..++.
T Consensus 40 ~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~ 81 (194)
T PRK14158 40 DRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEK 81 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447777777777777777777778888877776665555553
No 125
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=40.35 E-value=94 Score=31.66 Aligned_cols=10 Identities=30% Similarity=0.544 Sum_probs=5.9
Q ss_pred CCccccccCC
Q psy1953 1 LNSCQFQNGT 10 (379)
Q Consensus 1 ~~~~~f~~~~ 10 (379)
+++|++|+..
T Consensus 128 in~Cd~F~~~ 137 (307)
T PF15112_consen 128 INSCDHFKKY 137 (307)
T ss_pred HHHhhccccc
Confidence 4789544444
No 126
>PRK14163 heat shock protein GrpE; Provisional
Probab=40.19 E-value=1.1e+02 Score=29.50 Aligned_cols=39 Identities=15% Similarity=0.292 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVES 180 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~ 180 (379)
...++.++..+..+..++...+.++.++|..-+++..++
T Consensus 42 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE 80 (214)
T PRK14163 42 TAGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERD 80 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666677777777777776655555555
No 127
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=40.07 E-value=1.6e+02 Score=25.74 Aligned_cols=53 Identities=25% Similarity=0.416 Sum_probs=38.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHhcC
Q psy1953 138 TTNRMQVLKRQVQSLTMHQKKLEAELQQIE---EKFEAKKRKFVESSEQFQEELKK 190 (379)
Q Consensus 138 t~dRiq~LkkQVqsL~~eQeKLeaELqqlE---eefqeKKrK~~E~sEkf~~ELKK 190 (379)
+..-+..+...++.+-..+.+|+.+...+. .+|...-.+|....+.|+..||.
T Consensus 31 ~~~l~d~ln~~v~~~~~Nqk~ie~e~k~L~~~~~~l~kqt~qw~~~~~~~~~~LKE 86 (121)
T PF06320_consen 31 TNALVDHLNSRVSEAYENQKKIEKEAKQLQRNTAKLAKQTDQWLKLVDSFNDALKE 86 (121)
T ss_pred HHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334466677778888777888876555444 44566667888888999999998
No 128
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=40.07 E-value=88 Score=26.65 Aligned_cols=28 Identities=21% Similarity=0.165 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEK 169 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEee 169 (379)
|..+++++.++..++++++.+-++++.+
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~e 56 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAE 56 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444333
No 129
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=39.62 E-value=1.5e+02 Score=28.83 Aligned_cols=42 Identities=19% Similarity=0.487 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQ 183 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~sEk 183 (379)
++.|..++.++...+..|+..|..++..+......+......
T Consensus 225 ~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~ 266 (312)
T PF00038_consen 225 IQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAE 266 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhc
Confidence 666666666666666666666766666666655555555433
No 130
>KOG4438|consensus
Probab=39.29 E-value=40 Score=35.75 Aligned_cols=31 Identities=13% Similarity=0.305 Sum_probs=24.8
Q ss_pred ccccccccccccchHHHHHHHhcCCCCCCcc
Q psy1953 104 YSVKHVAYARYLRNHRLINEIFSDSVVPDVR 134 (379)
Q Consensus 104 ~S~k~laaarfdRNhrLmsELfsd~vVpd~r 134 (379)
|++++|--.--.|..+|+++++.-+.+-+.+
T Consensus 99 F~~~DLlkPes~Rtq~~LSavvNfa~fRe~k 129 (446)
T KOG4438|consen 99 FSFKDLLKPESSRTQRFLSAVVNFALFREEK 129 (446)
T ss_pred CchhhhcCccHHHHHHHHHHHHHHHHHHHHH
Confidence 8999988778889999999998865554443
No 131
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=39.29 E-value=71 Score=26.06 Aligned_cols=33 Identities=27% Similarity=0.541 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 147 RQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVE 179 (379)
Q Consensus 147 kQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E 179 (379)
+++.++..+.++|+.+|..+|.+.=.++..+.+
T Consensus 2 ~~L~~l~~~k~~Le~~L~~lE~qIy~~Et~YL~ 34 (80)
T PF09340_consen 2 KELKELLQKKKKLEKDLAALEKQIYDKETSYLE 34 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888888888887777777777
No 132
>KOG4005|consensus
Probab=38.82 E-value=1.6e+02 Score=29.38 Aligned_cols=49 Identities=18% Similarity=0.279 Sum_probs=32.8
Q ss_pred HHHHHHhcCCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 119 RLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEA 172 (379)
Q Consensus 119 rLmsELfsd~vVpd~rS~vt~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqe 172 (379)
+|.+.+..+.+-. -...|+..+..++.+|..++++|..|-+.+.++...
T Consensus 74 KLKNRVAAQtaRD-----rKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~ 122 (292)
T KOG4005|consen 74 KLKNRVAAQTARD-----RKKARMEEMEYEIKDLTEENEILQNENDSLRAINES 122 (292)
T ss_pred HHHHHHHHhhhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555543322 123568888999999999999998887766655443
No 133
>PRK14155 heat shock protein GrpE; Provisional
Probab=38.79 E-value=1e+02 Score=29.57 Aligned_cols=38 Identities=13% Similarity=0.185 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1953 143 QVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVES 180 (379)
Q Consensus 143 q~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~ 180 (379)
..+..++..+..+.+++...+.++.++|+.-+++.+++
T Consensus 16 ~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE 53 (208)
T PRK14155 16 DDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAERE 53 (208)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444555555555554444333333
No 134
>KOG0837|consensus
Probab=38.36 E-value=65 Score=32.21 Aligned_cols=43 Identities=26% Similarity=0.481 Sum_probs=32.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1953 138 TTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVES 180 (379)
Q Consensus 138 t~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~ 180 (379)
..+||..|+++|..+...+.+|..++..+.+...+.|+++.+-
T Consensus 225 kLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~h 267 (279)
T KOG0837|consen 225 KLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVMEH 267 (279)
T ss_pred HHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888888888888888877777777777777654
No 135
>PRK14154 heat shock protein GrpE; Provisional
Probab=38.34 E-value=1.3e+02 Score=29.05 Aligned_cols=17 Identities=35% Similarity=0.335 Sum_probs=10.0
Q ss_pred HHHHHHhHHhHHHHHHHH
Q psy1953 57 MAAKAKGKQAQQAAEERE 74 (379)
Q Consensus 57 i~aK~ra~~~~~~~~~~~ 74 (379)
..||++|+... +.+..|
T Consensus 15 ~~~~~~~~~~~-~~~~~~ 31 (208)
T PRK14154 15 TKAKNKWEKVM-EAEEEQ 31 (208)
T ss_pred hhhhhHHHHHH-HHHHHH
Confidence 46788888752 444433
No 136
>KOG0993|consensus
Probab=38.09 E-value=60 Score=34.55 Aligned_cols=32 Identities=34% Similarity=0.329 Sum_probs=20.3
Q ss_pred HHHHHHHHhHHHHHHHhcCCCCCchhhhhhhc
Q psy1953 172 AKKRKFVESSEQFQEELKKPGMGPEGYLNRLS 203 (379)
Q Consensus 172 eKKrK~~E~sEkf~~ELKK~~vdeE~~~~~l~ 203 (379)
+|.+.+.--.++.+++||++....|...++|.
T Consensus 151 eKlrelv~pmekeI~elk~kl~~aE~~i~El~ 182 (542)
T KOG0993|consen 151 EKLRELVTPMEKEINELKKKLAKAEQRIDELS 182 (542)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44555555567888888886666555555555
No 137
>PTZ00421 coronin; Provisional
Probab=37.99 E-value=84 Score=33.51 Aligned_cols=44 Identities=18% Similarity=0.293 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQ 185 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~sEkf~ 185 (379)
+..-.++++.|..+..+..+||++|.+..++|+..+.+..|+.+
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (493)
T PTZ00421 448 LDERLGRLQALSEKLRTQHEEIKRCREALQKKESIVMETLEKIQ 491 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45556678888888888899999999999999988888876643
No 138
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=37.99 E-value=2.4e+02 Score=23.46 Aligned_cols=28 Identities=18% Similarity=0.405 Sum_probs=20.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 138 TTNRMQVLKRQVQSLTMHQKKLEAELQQ 165 (379)
Q Consensus 138 t~dRiq~LkkQVqsL~~eQeKLeaELqq 165 (379)
+.+-|..|+-.|.+|+.++..|..+++.
T Consensus 16 AvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 16 AIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888888877777776555
No 139
>KOG0162|consensus
Probab=37.94 E-value=1.1e+02 Score=34.98 Aligned_cols=22 Identities=32% Similarity=0.726 Sum_probs=15.7
Q ss_pred ceEEeechHHHHHHhc---CcEEEE
Q psy1953 342 GQLVFQEGVLAKAMRL---GYWIIL 363 (379)
Q Consensus 342 g~~~~~eg~l~~a~r~---g~w~~l 363 (379)
..+.|.-|-.+.-+++ |||+-.
T Consensus 1066 dEls~~~~diIei~~edpSGWw~gk 1090 (1106)
T KOG0162|consen 1066 DELSFKKGDIIEIMREDPSGWWLGK 1090 (1106)
T ss_pred ccccccCCCEEEEeccCCCcchhhc
Confidence 4566777777766665 999876
No 140
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=37.69 E-value=2e+02 Score=25.38 Aligned_cols=44 Identities=11% Similarity=0.308 Sum_probs=34.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1953 138 TTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESS 181 (379)
Q Consensus 138 t~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~s 181 (379)
...+++.+.+++.+|..+.......|..+..++.+...++.+..
T Consensus 49 ~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~ 92 (141)
T PF13874_consen 49 HRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVL 92 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34558888888888888888888888888888888877777764
No 141
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=37.28 E-value=96 Score=30.84 Aligned_cols=51 Identities=27% Similarity=0.403 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC
Q psy1953 140 NRMQVLKRQVQSLTMH----QKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190 (379)
Q Consensus 140 dRiq~LkkQVqsL~~e----QeKLeaELqqlEeefqeKKrK~~E~sEkf~~ELKK 190 (379)
.+|+.+..-+.-+... .+.+..+|+.++++...+...+....+.+.+++++
T Consensus 45 qqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k 99 (258)
T PF15397_consen 45 QQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQK 99 (258)
T ss_pred HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4555555555444332 44456677777777777776666666666666654
No 142
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=37.11 E-value=1.1e+02 Score=32.43 Aligned_cols=40 Identities=18% Similarity=0.437 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1953 141 RMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVES 180 (379)
Q Consensus 141 Riq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~ 180 (379)
.|..+.+.+.....+.++|+.+|..++.+...-...+.++
T Consensus 46 ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s 85 (420)
T COG4942 46 EIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIET 85 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666666666667777777777777766555444444
No 143
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=37.08 E-value=84 Score=30.16 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQI 166 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqql 166 (379)
++.+..+.+.|..+...|..+++.+
T Consensus 44 id~~~~e~~~L~~e~~~l~~e~e~L 68 (251)
T PF11932_consen 44 IDQWDDEKQELLAEYRQLEREIENL 68 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444333
No 144
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=37.07 E-value=1.5e+02 Score=23.23 Aligned_cols=25 Identities=8% Similarity=0.300 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 146 KRQVQSLTMHQKKLEAELQQIEEKF 170 (379)
Q Consensus 146 kkQVqsL~~eQeKLeaELqqlEeef 170 (379)
..++.+|+.+.+-++..|+.+++..
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v 27 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVV 27 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555444444444444443
No 145
>smart00350 MCM minichromosome maintenance proteins.
Probab=37.06 E-value=18 Score=38.39 Aligned_cols=37 Identities=19% Similarity=0.086 Sum_probs=31.0
Q ss_pred CCceEEeechHHHHHHhcCcEEEEeccccCChhhhhhhc
Q psy1953 340 ETGQLVFQEGVLAKAMRLGYWIILDELNLAPLPFLLYLL 378 (379)
Q Consensus 340 ~~g~~~~~eg~l~~a~r~g~w~~ldelnlA~~~vl~~l~ 378 (379)
.+|.|.+..|.|+.| .|--++|||+|..+.++...|+
T Consensus 285 ~~g~~~~~~G~l~~A--~~Gil~iDEi~~l~~~~q~~L~ 321 (509)
T smart00350 285 ETREFTLEGGALVLA--DNGVCCIDEFDKMDDSDRTAIH 321 (509)
T ss_pred CcceEEecCccEEec--CCCEEEEechhhCCHHHHHHHH
Confidence 358899999999875 6779999999999988877664
No 146
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=36.95 E-value=1.9e+02 Score=25.14 Aligned_cols=48 Identities=19% Similarity=0.405 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy1953 139 TNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQE 186 (379)
Q Consensus 139 ~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~sEkf~~ 186 (379)
...+..++.++..+..........|...+..+.+.+..+.++.+.+..
T Consensus 65 r~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~ 112 (132)
T PF07926_consen 65 REELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQ 112 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 355888899999999999999999999999998888888777654433
No 147
>PRK11239 hypothetical protein; Provisional
Probab=36.88 E-value=92 Score=30.22 Aligned_cols=64 Identities=14% Similarity=0.161 Sum_probs=31.8
Q ss_pred ccccccccccccchHHHHHHHhcCCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 104 YSVKHVAYARYLRNHRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEE 168 (379)
Q Consensus 104 ~S~k~laaarfdRNhrLmsELfsd~vVpd~rS~vt~dRiq~LkkQVqsL~~eQeKLeaELqqlEe 168 (379)
+.+| +....=.|++|++.-|-.+..+..........++..|..+|..|+.+...|++.|+.+..
T Consensus 148 lV~~-LpR~pG~RE~Ry~hLl~g~v~~~~~~~~~~~~~~~~Le~rv~~Le~eva~L~~~l~~l~~ 211 (215)
T PRK11239 148 FVVR-LAREPGKRESRYMHLFSGEVDDQPAVTDMSNAVDGDLQARVEALEIEVAELKQRLDSLLA 211 (215)
T ss_pred eeee-cCCCCCcchHHHHHHhcCCccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 566667889998876654422222211122333444555555555554444444444433
No 148
>PF09421 FRQ: Frequency clock protein; InterPro: IPR018554 The frequency clock protein, is the central component of the frq-based circadian negative feedback loop, regulates various aspects of the circadian clock in Neurospora crassa []. This protein has been shown to interact with itself via a coiled-coil [].
Probab=36.61 E-value=39 Score=39.18 Aligned_cols=49 Identities=24% Similarity=0.396 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHhHHHHHHHhcC
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKF------------------EAKKRKFVESSEQFQEELKK 190 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeef------------------qeKKrK~~E~sEkf~~ELKK 190 (379)
-+.++.-|.+|..+++||++||++-++.. ..|||++++.+-.|...|..
T Consensus 130 ~ddyRSVIDDLTve~kkLK~eLkrykq~g~~~L~~dKLFEik~hGLP~~KKrELE~tLR~FAa~l~~ 196 (989)
T PF09421_consen 130 ADDYRSVIDDLTVENKKLKEELKRYKQRGPAMLRKDKLFEIKIHGLPKRKKRELEATLRDFAASLDG 196 (989)
T ss_pred chhhhhhhhhHHHHHHHHHHHHHHhccCCchhccccceeEEEecCCChHHHHHHHHHHHHHHhhccc
Confidence 45666777799999999999999755543 47888999999999999953
No 149
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=36.34 E-value=74 Score=30.47 Aligned_cols=47 Identities=17% Similarity=0.304 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEEL 188 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~sEkf~~EL 188 (379)
|+.++.++..|..+..+-..+|.++++++.+-+..|...-+.+.+||
T Consensus 125 YD~~~~k~~kl~~K~~kd~~kL~kae~el~~a~~~Ye~lN~~Lk~EL 171 (224)
T cd07591 125 YDAARAKVRKLIDKPSEDPTKLPRAEKELDEAKEVYETLNDQLKTEL 171 (224)
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666666655555456677777777666655555544444444
No 150
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=36.29 E-value=1.6e+02 Score=26.30 Aligned_cols=39 Identities=31% Similarity=0.489 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVES 180 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~ 180 (379)
...+..+|.+|..++..|+.+|.++++++.+-+.++.+.
T Consensus 30 ~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~ 68 (143)
T PF12718_consen 30 NEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEES 68 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344444444555555555555555555554444444333
No 151
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=36.10 E-value=1.3e+02 Score=29.45 Aligned_cols=49 Identities=16% Similarity=0.240 Sum_probs=29.5
Q ss_pred CccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1953 132 DVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVES 180 (379)
Q Consensus 132 d~rS~vt~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~ 180 (379)
+..++...+|+..|.+++..-..-+-+|...|+.++.+..+..+.+++.
T Consensus 32 ~~~~~~~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~ 80 (263)
T PRK10803 32 SVGSGSVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQEN 80 (263)
T ss_pred HcCCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4444445667776666666555555566666666666666555555555
No 152
>KOG4368|consensus
Probab=36.02 E-value=6.7e+02 Score=28.18 Aligned_cols=15 Identities=27% Similarity=0.191 Sum_probs=9.1
Q ss_pred cCcEEEEeccccCCh
Q psy1953 357 LGYWIILDELNLAPL 371 (379)
Q Consensus 357 ~g~w~~ldelnlA~~ 371 (379)
.++-+.+|-||.|+.
T Consensus 459 ~~~e~~epvin~Ap~ 473 (757)
T KOG4368|consen 459 PGHRMPHPGINEAPP 473 (757)
T ss_pred ccccCCccccccCCC
Confidence 345556666676665
No 153
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=35.81 E-value=2.1e+02 Score=22.25 Aligned_cols=31 Identities=16% Similarity=0.399 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 141 RMQVLKRQVQSLTMHQKKLEAELQQIEEKFE 171 (379)
Q Consensus 141 Riq~LkkQVqsL~~eQeKLeaELqqlEeefq 171 (379)
+++.|-.+|+.|..+...|..++..+..+.+
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~ 34 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQ 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666666666665555444
No 154
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=35.73 E-value=2.1e+02 Score=29.53 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=11.1
Q ss_pred hHHHHHHHhhCCHHHHHHHHHHHHh
Q psy1953 39 EYEKNLKAYHNSPQYLAYMAAKAKG 63 (379)
Q Consensus 39 eY~~~~k~yhnSpay~ayi~aK~ra 63 (379)
+-.+..+.|..+ +-.||.--.+|
T Consensus 51 ei~~~A~~~~~~--~~eYv~~l~ka 73 (342)
T PF06632_consen 51 EIRQRAKDWDME--VEEYVQELKKA 73 (342)
T ss_dssp HHHHHHHHTTS---HHHHHHHHHHH
T ss_pred HHHHHHHHhcCC--HHHHHHHHHHH
Confidence 344455566555 55566543333
No 155
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=35.57 E-value=1.6e+02 Score=30.96 Aligned_cols=67 Identities=28% Similarity=0.362 Sum_probs=0.0
Q ss_pred ccchHHHHHHHhcCCCCCCccchhhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHH----HHHHHHHHHHHhHHHHH
Q psy1953 114 YLRNHRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMH----QKKLEAELQQIEE----KFEAKKRKFVESSEQFQ 185 (379)
Q Consensus 114 fdRNhrLmsELfsd~vVpd~rS~vt~dRiq~LkkQVqsL~~e----QeKLeaELqqlEe----efqeKKrK~~E~sEkf~ 185 (379)
|.++..|+.+.+.+ ...|++.|..||.++..- ...|..+|.-+|+ ...++-+.+.|..|.|.
T Consensus 242 ~~~e~~~~~~~LqE----------Er~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~q 311 (395)
T PF10267_consen 242 YQREYQFILEALQE----------ERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQ 311 (395)
T ss_pred HHHHHHHHHHHHHH----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHH
Q ss_pred HHhcC
Q psy1953 186 EELKK 190 (379)
Q Consensus 186 ~ELKK 190 (379)
+.+.|
T Consensus 312 tRisk 316 (395)
T PF10267_consen 312 TRISK 316 (395)
T ss_pred HHHHH
No 156
>PRK14145 heat shock protein GrpE; Provisional
Probab=35.38 E-value=1.7e+02 Score=27.86 Aligned_cols=42 Identities=14% Similarity=0.305 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESS 181 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~s 181 (379)
..+..|+.++..+..+..++...+.++.++|..-+++..++.
T Consensus 45 ~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~ 86 (196)
T PRK14145 45 DEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEK 86 (196)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777777777777777777776665555553
No 157
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=35.30 E-value=1.9e+02 Score=22.08 Aligned_cols=27 Identities=15% Similarity=0.497 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQI 166 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqql 166 (379)
.++..+++++.++..++.+|+.+++.+
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 447778888888888888888888777
No 158
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=35.04 E-value=1.5e+02 Score=29.66 Aligned_cols=21 Identities=5% Similarity=-0.162 Sum_probs=12.8
Q ss_pred hhhhhhhhccc---cCCCcccccc
Q psy1953 16 ANCYGQSIGGC---SKIPQCNENN 36 (379)
Q Consensus 16 lweigKiig~m---~~l~d~ek~~ 36 (379)
.|=|++.=.+. .|+.-|+..+
T Consensus 27 ~WLv~rydP~~~i~~~i~tE~dRV 50 (267)
T PF10234_consen 27 RWLVKRYDPDADIPGDIDTEQDRV 50 (267)
T ss_pred HHHHHHcCCCCCCCCcCCcHHHHH
Confidence 67777766655 5665555444
No 159
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=34.94 E-value=2e+02 Score=25.95 Aligned_cols=67 Identities=19% Similarity=0.249 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC-CCCCchhhhhhhccCCccc
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK-PGMGPEGYLNRLSASPVLT 209 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~sEkf~~ELKK-~~vdeE~~~~~l~~r~v~~ 209 (379)
|..|..+.++-...|..|..++.+.......+++++++. -.+++.|++ -.-.+=.-..||-.|+.++
T Consensus 49 L~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL-~~ENe~lR~Wa~t~LPd~V~RL~~RPA~t 116 (135)
T TIGR03495 49 LIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERL-KRENEDLRRWADTPLPDDVIRLRQRPALT 116 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCHHHHHHhcCCCcHHHHHHhcCCCCC
Confidence 555555556666677788888888888877777777776 455666776 1111112234777777654
No 160
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=34.68 E-value=88 Score=31.89 Aligned_cols=56 Identities=14% Similarity=0.200 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCCchh
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKKPGMGPEG 197 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~sEkf~~ELKK~~vdeE~ 197 (379)
+..|.+++..|..+...+..+|.++..+-......++.+.|.+++.|-|+.-.+++
T Consensus 137 V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~ 192 (310)
T PF09755_consen 137 VNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEA 192 (310)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777766777777777766666667777777778887664433333
No 161
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=34.67 E-value=24 Score=40.01 Aligned_cols=37 Identities=38% Similarity=0.554 Sum_probs=29.5
Q ss_pred ceEEeec-hHHHHHHhcC-c-EEEEeccccCChhhhhhhc
Q psy1953 342 GQLVFQE-GVLAKAMRLG-Y-WIILDELNLAPLPFLLYLL 378 (379)
Q Consensus 342 g~~~~~e-g~l~~a~r~g-~-w~~ldelnlA~~~vl~~l~ 378 (379)
|-.-|.+ |.|+.|+|+- + -|+||||--|-.||+..||
T Consensus 575 GYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilL 614 (786)
T COG0542 575 GYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLL 614 (786)
T ss_pred CCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHH
Confidence 3344443 7899999984 5 6789999999999999876
No 162
>PRK00736 hypothetical protein; Provisional
Probab=34.62 E-value=2.3e+02 Score=22.34 Aligned_cols=21 Identities=10% Similarity=0.370 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1953 149 VQSLTMHQKKLEAELQQIEEK 169 (379)
Q Consensus 149 VqsL~~eQeKLeaELqqlEee 169 (379)
+.+|+.+..-.+..|+.++..
T Consensus 7 i~~LE~klafqe~tie~Ln~~ 27 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQ 27 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444333
No 163
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=34.58 E-value=1.5e+02 Score=30.81 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=28.0
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 135 SVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFE 171 (379)
Q Consensus 135 S~vt~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefq 171 (379)
.++..++.--|+....+|++++++|..||.++|++..
T Consensus 27 ~~~~~~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 27 EGVSIDENFALRMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred cccchhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566677777777788888888888888888876654
No 164
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=34.43 E-value=80 Score=28.99 Aligned_cols=14 Identities=21% Similarity=-0.021 Sum_probs=8.8
Q ss_pred ccccccchHHHHHH
Q psy1953 110 AYARYLRNHRLINE 123 (379)
Q Consensus 110 aaarfdRNhrLmsE 123 (379)
+-.|.+||-.+.--
T Consensus 96 ~~fraQRN~YIsGf 109 (192)
T PF05529_consen 96 KKFRAQRNMYISGF 109 (192)
T ss_pred HHHHHHHhHHHHHH
Confidence 33678888766433
No 165
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=34.41 E-value=30 Score=36.55 Aligned_cols=54 Identities=28% Similarity=0.248 Sum_probs=39.5
Q ss_pred CCCCCCCCC--Cccccc---CCCCceEEeechHHHHHHhcCcEEEEeccccCChhhhhhhc
Q psy1953 323 YPPHPGSQH--PHQNCA---HPETGQLVFQEGVLAKAMRLGYWIILDELNLAPLPFLLYLL 378 (379)
Q Consensus 323 ~~ph~~~~~--~~g~~~---~~~~g~~~~~eg~l~~a~r~g~w~~ldelnlA~~~vl~~l~ 378 (379)
+...++.++ ++|+.. .-+.|-=+|..|+|.+| ++--|.+|||||.+.-+.-.||
T Consensus 107 v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~A--nRGIlYvDEvnlL~d~lvd~LL 165 (423)
T COG1239 107 VALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARA--NRGILYVDEVNLLDDHLVDALL 165 (423)
T ss_pred ecCCCccchhhhccccCHHHHHhcCccccCCcchhhc--cCCEEEEeccccccHHHHHHHH
Confidence 333444444 788872 22348889999999888 5668999999999988777765
No 166
>PRK14148 heat shock protein GrpE; Provisional
Probab=34.07 E-value=1.9e+02 Score=27.58 Aligned_cols=41 Identities=10% Similarity=0.214 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVES 180 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~ 180 (379)
.++..+..++..+..+..++...+.++.++|..-+++..++
T Consensus 40 ~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE 80 (195)
T PRK14148 40 EQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERD 80 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566666677777777777777777777776655555554
No 167
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=34.04 E-value=1.6e+02 Score=26.99 Aligned_cols=8 Identities=38% Similarity=0.758 Sum_probs=3.0
Q ss_pred HHHHHhcC
Q psy1953 183 QFQEELKK 190 (379)
Q Consensus 183 kf~~ELKK 190 (379)
+..+||++
T Consensus 165 ~lk~el~~ 172 (192)
T PF05529_consen 165 KLKKELEK 172 (192)
T ss_pred HHHHHHHH
Confidence 33333333
No 168
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=33.93 E-value=2e+02 Score=26.05 Aligned_cols=29 Identities=28% Similarity=0.325 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 141 RMQVLKRQVQSLTMHQKKLEAELQQIEEK 169 (379)
Q Consensus 141 Riq~LkkQVqsL~~eQeKLeaELqqlEee 169 (379)
..+..+.+|.+|...+..+...|+..+++
T Consensus 88 ~lq~~q~kv~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 88 ELQKKQEKVSELESLNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 37777777888888888888888777776
No 169
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=33.85 E-value=2e+02 Score=26.76 Aligned_cols=30 Identities=30% Similarity=0.484 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFE 171 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefq 171 (379)
.+.|+.++.+|..+++.|+.+++.++.++.
T Consensus 106 ~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~ 135 (161)
T TIGR02894 106 NERLKNQNESLQKRNEELEKELEKLRQRLS 135 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555555555555544444443
No 170
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=33.72 E-value=28 Score=33.49 Aligned_cols=27 Identities=15% Similarity=0.158 Sum_probs=22.3
Q ss_pred HHHHhcCcEEEEeccccCChhhhhhhc
Q psy1953 352 AKAMRLGYWIILDELNLAPLPFLLYLL 378 (379)
Q Consensus 352 ~~a~r~g~w~~ldelnlA~~~vl~~l~ 378 (379)
+.+++.+.+|+|||++..+.++.+.|+
T Consensus 76 l~~~~~~~vl~iDEi~~l~~~~~e~l~ 102 (305)
T TIGR00635 76 LTNLEEGDVLFIDEIHRLSPAVEELLY 102 (305)
T ss_pred HHhcccCCEEEEehHhhhCHHHHHHhh
Confidence 456778999999999999988877654
No 171
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=33.72 E-value=93 Score=29.74 Aligned_cols=47 Identities=21% Similarity=0.397 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEEL 188 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~sEkf~~EL 188 (379)
|+..+.++..|..+.++-+.+|.++++++..-+..|+..-+.+.+||
T Consensus 120 YDr~r~~~~kL~~K~~kde~KL~kae~el~~Ak~~Ye~lN~~L~~EL 166 (211)
T cd07588 120 YDSARHNLEALKAKKKVDDQKLTKAEEELQQAKKVYEELNTELHEEL 166 (211)
T ss_pred HHHHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67777777777776666677777888887776666655544444444
No 172
>PF03992 ABM: Antibiotic biosynthesis monooxygenase; InterPro: IPR007138 This domain is found in monooxygenases involved in the biosynthesis of several antibiotics by Streptomyces species, which can carry out oxygenation without the assistance of any of the prosthetic groups, metal ions or cofactors normally associated with activation of molecular oxygen. The structure of ActVA-Orf6 monooxygenase from Streptomyces coelicolor (Q53908 from SWISSPROT), which is involved in actinorhodin biosynthesis, reveals a dimeric alpha+beta barrel topology []. There is also a conserved histidine that is likely to be an active site residue. In S. coelicolor SCO1909 (Q9X9W3 from SWISSPROT) this domain occurs as a repeat. This domain is also found in protein LsrG, involved in the degradation of quorum-sensing molecule autoinducer-2 [], and in several uncharacterised proteins.; PDB: 1X7V_A 3F44_A 4DN9_B 1N5T_B 1LQ9_A 1N5Q_B 1N5V_A 1N5S_A 2GFF_B 3BM7_A ....
Probab=33.67 E-value=20 Score=26.71 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=24.0
Q ss_pred cCCCcccccchh---hHHHHHHHhhCCHHHHHHHHH
Q psy1953 27 SKIPQCNENNFS---EYEKNLKAYHNSPQYLAYMAA 59 (379)
Q Consensus 27 ~~l~d~ek~~~~---eY~~~~k~yhnSpay~ayi~a 59 (379)
+++.|.++-... +=+++++++.+|+.|++|..+
T Consensus 43 ~~~~~~~~~~~~~~W~s~~a~~~~~~s~~~~~~~~~ 78 (78)
T PF03992_consen 43 RSLDDPNRYVIVERWESEEAFQAHFKSPEFKAFQEW 78 (78)
T ss_dssp EESSSTTEEEEEEEESSHHHHHHHHTSHHHHHHHHC
T ss_pred EecCCCCEEEEEEEECCHHHHHHHHcCHHHHHHHhC
Confidence 666666654422 346899999999999998753
No 173
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=33.63 E-value=93 Score=28.27 Aligned_cols=53 Identities=26% Similarity=0.375 Sum_probs=34.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC
Q psy1953 138 TTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190 (379)
Q Consensus 138 t~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~sEkf~~ELKK 190 (379)
|.++++.|..+-.++..+...|++++++.+++.++....+.--...|..+|+.
T Consensus 78 t~aEvqaL~S~G~sl~~kVtSLea~lEkqqQeLkAdhS~lllhvk~~~~DLr~ 130 (138)
T PF03954_consen 78 TLAEVQALSSQGGSLQDKVTSLEAKLEKQQQELKADHSTLLLHVKQFPKDLRS 130 (138)
T ss_pred HHHHHHHHHhccccHHhHcccHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 44556677766667777777777777777777766655555555566666654
No 174
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=33.54 E-value=1.2e+02 Score=22.43 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEE 168 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEe 168 (379)
+..+..++..|..++..|..++..++.
T Consensus 27 ~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 27 EEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566666666666666666666665543
No 175
>PHA03373 tegument protein; Provisional
Probab=33.35 E-value=4.2e+02 Score=26.23 Aligned_cols=62 Identities=19% Similarity=0.293 Sum_probs=40.8
Q ss_pred ccccchHHHHHHHhcCCCCCCccchhhhhHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
Q psy1953 112 ARYLRNHRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKL---------EAELQQIEEKFEAKK 174 (379)
Q Consensus 112 arfdRNhrLmsELfsd~vVpd~rS~vt~dRiq~LkkQVqsL~~eQeKL---------eaELqqlEeefqeKK 174 (379)
..|..++.||..++++...+..+.... -..+..++-++.|..-.-|| ...|+++-+||..-.
T Consensus 76 k~c~~r~~~L~r~L~~~C~pH~r~Aae-vEc~KsqrIleaLDVvilKl~vGEFtmse~dsle~LL~KFStDQ 146 (247)
T PHA03373 76 KQCKSRYTFLERCLANGCPPHVRPAAE-VECMKSKRILEALDVVILKLLVGEFTMSETDSLNRLLEKFSTDQ 146 (247)
T ss_pred HHHHHHHHHHHHHHhccCccccccHHH-HHHHHHHHHHHHHHHHHHHHHHhccccCcchHHHHHHHHhccch
Confidence 457888899999999988888885433 23445556666666666665 235666666665433
No 176
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=33.34 E-value=2.2e+02 Score=26.87 Aligned_cols=42 Identities=21% Similarity=0.434 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESS 181 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~s 181 (379)
.++..+.+++.+|..+.+-|+..+.+++.++.+-.++|....
T Consensus 93 ~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i 134 (201)
T PF13851_consen 93 ARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAI 134 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666666666666665555555553
No 177
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=33.32 E-value=21 Score=34.12 Aligned_cols=18 Identities=50% Similarity=0.645 Sum_probs=12.5
Q ss_pred HHHHhcCc--EEEEeccccC
Q psy1953 352 AKAMRLGY--WIILDELNLA 369 (379)
Q Consensus 352 ~~a~r~g~--w~~ldelnlA 369 (379)
.+++..|. -|||||||.|
T Consensus 115 ~~~l~~~~ydlviLDEl~~a 134 (198)
T COG2109 115 KEALADGKYDLVILDELNYA 134 (198)
T ss_pred HHHHhCCCCCEEEEehhhHH
Confidence 34555654 4999999965
No 178
>PRK10884 SH3 domain-containing protein; Provisional
Probab=33.27 E-value=1.8e+02 Score=27.80 Aligned_cols=12 Identities=42% Similarity=0.545 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLT 153 (379)
Q Consensus 142 iq~LkkQVqsL~ 153 (379)
+..++++++++.
T Consensus 95 lp~le~el~~l~ 106 (206)
T PRK10884 95 VPDLENQVKTLT 106 (206)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 179
>KOG3647|consensus
Probab=33.17 E-value=1.5e+02 Score=29.98 Aligned_cols=49 Identities=18% Similarity=0.391 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hHHHHHHHhcC
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVE----------SSEQFQEELKK 190 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E----------~sEkf~~ELKK 190 (379)
.+.++.++.........|.++|++-..++....++|+. +.|+|.+||+|
T Consensus 121 ~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqk 179 (338)
T KOG3647|consen 121 LQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQK 179 (338)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 34444444444444444455555444444333333332 24677778877
No 180
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=33.11 E-value=1.8e+02 Score=21.35 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRK 176 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK 176 (379)
|..|++....|..+...|..+.+.+..+....+.+
T Consensus 7 y~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 7 YDALKASYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888888888888888777776654433
No 181
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=33.10 E-value=1.9e+02 Score=28.61 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC
Q psy1953 147 RQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190 (379)
Q Consensus 147 kQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~sEkf~~ELKK 190 (379)
..+.++..++++|+.++.+++++.+.....+ ++++++||+
T Consensus 66 ~~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l----~~EN~rLr~ 105 (283)
T TIGR00219 66 KDVNNLEYENYKLRQELLKKNQQLEILTQNL----KQENVRLRE 105 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 3445677888888888877755554433223 344455555
No 182
>PRK00846 hypothetical protein; Provisional
Probab=32.99 E-value=2e+02 Score=23.63 Aligned_cols=19 Identities=16% Similarity=0.142 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy1953 147 RQVQSLTMHQKKLEAELQQ 165 (379)
Q Consensus 147 kQVqsL~~eQeKLeaELqq 165 (379)
.++.+|+.+..-.+.-|+.
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~ 31 (77)
T PRK00846 13 ARLVELETRLSFQEQALTE 31 (77)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444443333333333
No 183
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=32.76 E-value=1.2e+02 Score=32.54 Aligned_cols=42 Identities=12% Similarity=0.313 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESS 181 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~s 181 (379)
.++..++++++.+..++++|.+|-+++.++-..-..++....
T Consensus 66 a~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av 107 (472)
T TIGR03752 66 AEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAV 107 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 567777777777777777777777766554443334444333
No 184
>PRK11637 AmiB activator; Provisional
Probab=32.69 E-value=1.8e+02 Score=30.14 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKF 177 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~ 177 (379)
+..+++++..+..++.+++.+|...++.+....+.+
T Consensus 98 i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~ 133 (428)
T PRK11637 98 LNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAA 133 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555544444444333
No 185
>PRK14157 heat shock protein GrpE; Provisional
Probab=32.59 E-value=1.5e+02 Score=28.97 Aligned_cols=36 Identities=8% Similarity=0.051 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1953 145 LKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVES 180 (379)
Q Consensus 145 LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~ 180 (379)
+..++..++.+..++...+.++..+|..-+++..++
T Consensus 82 ~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE 117 (227)
T PRK14157 82 TLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQKE 117 (227)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555556666665555444444
No 186
>KOG0995|consensus
Probab=32.55 E-value=90 Score=34.32 Aligned_cols=52 Identities=21% Similarity=0.291 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC
Q psy1953 139 TNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190 (379)
Q Consensus 139 ~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~sEkf~~ELKK 190 (379)
+.++..+...+.++...+..++.+|..++.++..+|+.-+++..++..|+++
T Consensus 445 q~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~ 496 (581)
T KOG0995|consen 445 QEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEK 496 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666666677777777788888888888887776666666666655544
No 187
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=32.42 E-value=20 Score=38.58 Aligned_cols=28 Identities=25% Similarity=0.580 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 141 RMQVLKRQVQSLTMHQKKLEAELQQIEE 168 (379)
Q Consensus 141 Riq~LkkQVqsL~~eQeKLeaELqqlEe 168 (379)
+|+.|++|+++|+++++++...|.+.|.
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k~e~ 59 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDKVEK 59 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccchhhH
Confidence 4555555555555555555554544444
No 188
>PRK14140 heat shock protein GrpE; Provisional
Probab=32.39 E-value=1.9e+02 Score=27.43 Aligned_cols=36 Identities=19% Similarity=0.382 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKF 177 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~ 177 (379)
+..++.++..+..+.+.|...+.++.++|..-+++.
T Consensus 39 ~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~ 74 (191)
T PRK14140 39 LDEEQAKIAELEAKLDELEERYLRLQADFENYKRRI 74 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555555555555554433333
No 189
>PRK14160 heat shock protein GrpE; Provisional
Probab=32.27 E-value=2.1e+02 Score=27.55 Aligned_cols=42 Identities=12% Similarity=0.241 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESS 181 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~s 181 (379)
.++..|+.++..+..+..++...+.++.++|..-+++..++.
T Consensus 61 ~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~ 102 (211)
T PRK14160 61 DENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEK 102 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666677777777777777777777777776665555553
No 190
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=32.14 E-value=90 Score=32.59 Aligned_cols=29 Identities=17% Similarity=0.465 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEE 168 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEe 168 (379)
.+++.|++++.++..+.++++..|..++.
T Consensus 334 ~~~~~l~~~~~~~~~~l~~l~~~l~~l~~ 362 (451)
T PF03961_consen 334 EKLEELEEELEELKEELEKLKKNLKKLKK 362 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44666666666666666666666655544
No 191
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=32.07 E-value=1.9e+02 Score=27.48 Aligned_cols=31 Identities=23% Similarity=0.505 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC
Q psy1953 160 EAELQQIEEKFEAKKRKFVESSEQFQEELKK 190 (379)
Q Consensus 160 eaELqqlEeefqeKKrK~~E~sEkf~~ELKK 190 (379)
+.+|..++.+...-+.+|.+-++....||.+
T Consensus 155 ~~ev~~~e~~~~~a~~~fe~is~~~k~El~r 185 (224)
T cd07623 155 QQEIKEWEAKVDRGQKEFEEISKTIKKEIER 185 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555556666665566666666666666644
No 192
>PRK14151 heat shock protein GrpE; Provisional
Probab=31.93 E-value=1.9e+02 Score=27.02 Aligned_cols=36 Identities=14% Similarity=0.194 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1953 145 LKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVES 180 (379)
Q Consensus 145 LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~ 180 (379)
++.++..+..+..++...+.++.++|..-+++..++
T Consensus 25 l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE 60 (176)
T PRK14151 25 LTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQD 60 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445555555555555444333333
No 193
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=31.86 E-value=1.9e+02 Score=27.22 Aligned_cols=47 Identities=30% Similarity=0.386 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELK 189 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~sEkf~~ELK 189 (379)
|...+..+..+..+...++.+|..++-++.....+|... +..+++|.
T Consensus 81 y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kl-e~ErdeL~ 127 (201)
T PF13851_consen 81 YEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKL-EQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 555555555566666666666666666666666555555 44444443
No 194
>cd00225 API3 Ascaris pepsin inhibitor-3 (API3); protein inhibitor that reversibly inhibits aspartic proteinase cathepsin E, and gastric enzymes pepsin and gastricsin.
Probab=31.73 E-value=22 Score=32.77 Aligned_cols=27 Identities=19% Similarity=0.422 Sum_probs=24.7
Q ss_pred hccc--cCCCcccccchhhHHHHHHHhhC
Q psy1953 23 IGGC--SKIPQCNENNFSEYEKNLKAYHN 49 (379)
Q Consensus 23 ig~m--~~l~d~ek~~~~eY~~~~k~yhn 49 (379)
||+. |||+.+|+++..+|++-|.+|..
T Consensus 115 vg~~~~RdLT~~E~~EL~~f~~k~~~Yq~ 143 (159)
T cd00225 115 VGNTYARDLTPKEIAELKTFEKKQTAYQE 143 (159)
T ss_pred ECCEEeccCCHHHHHHHHHHHHHHHhhcC
Confidence 6788 99999999998899999999975
No 195
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=31.26 E-value=1.7e+02 Score=25.67 Aligned_cols=23 Identities=9% Similarity=0.049 Sum_probs=13.5
Q ss_pred ccccccccccccchHHHHHHHhc
Q psy1953 104 YSVKHVAYARYLRNHRLINEIFS 126 (379)
Q Consensus 104 ~S~k~laaarfdRNhrLmsELfs 126 (379)
+-.|=+..--|+....|..+|..
T Consensus 9 ~kiRVldp~~~~~t~~Lk~ec~~ 31 (120)
T PF14931_consen 9 NKIRVLDPEKADQTQELKEECKE 31 (120)
T ss_pred CCeeecChHHHHHHHHHHHHHHH
Confidence 44555555566666666666654
No 196
>KOG2391|consensus
Probab=31.26 E-value=1.5e+02 Score=30.81 Aligned_cols=37 Identities=22% Similarity=0.388 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRK 176 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK 176 (379)
..+..+++.-++|..-++||+++++.+|+++..-+..
T Consensus 232 aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~n 268 (365)
T KOG2391|consen 232 AEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKN 268 (365)
T ss_pred HHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 4477788888888888888888888888888765533
No 197
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=31.14 E-value=2.4e+02 Score=21.90 Aligned_cols=48 Identities=19% Similarity=0.403 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHhc
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQ----IEEKFEAKKRKFVESSEQFQEELK 189 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqq----lEeefqeKKrK~~E~sEkf~~ELK 189 (379)
+......+.+...-...++.|+.. ....+..+.+.+..+.+++..+|+
T Consensus 27 i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 27 IREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555555555555555555555542 334555666677777667766665
No 198
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=31.14 E-value=3.7e+02 Score=28.91 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=20.5
Q ss_pred CCCCCccchhhh-hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 128 SVVPDVRSVVTT-NRMQVLKRQVQSLTMHQKKLEAELQQ 165 (379)
Q Consensus 128 ~vVpd~rS~vt~-dRiq~LkkQVqsL~~eQeKLeaELqq 165 (379)
+.|.-+.|+++. .+-....++|+.|..+.+-|.+.|++
T Consensus 119 GLvrAKDSItSlKekt~~vnQHVq~LQseCsvlsEnLEr 157 (558)
T PF15358_consen 119 GLVRAKDSITSLKEKTSRVNQHVQTLQSECSVLSENLER 157 (558)
T ss_pred cceecccchhhHHHhhHHHHHHHHHHHHHhHHHHHHHHh
Confidence 444433344433 33555556666666666666666654
No 199
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=30.71 E-value=2.5e+02 Score=26.01 Aligned_cols=7 Identities=14% Similarity=0.425 Sum_probs=0.0
Q ss_pred HHHHHHh
Q psy1953 119 RLINEIF 125 (379)
Q Consensus 119 rLmsELf 125 (379)
.+...|.
T Consensus 92 el~~~L~ 98 (194)
T PF08614_consen 92 ELAQQLV 98 (194)
T ss_dssp -------
T ss_pred ccccccc
Confidence 3333333
No 200
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=30.57 E-value=1.8e+02 Score=24.49 Aligned_cols=37 Identities=22% Similarity=0.399 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFV 178 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~ 178 (379)
+..+++++..+....++|+.++..++.++.+...++.
T Consensus 69 ~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 69 IQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555444444443
No 201
>PF07377 DUF1493: Protein of unknown function (DUF1493); InterPro: IPR010862 This family consists of several bacterial proteins of around 115 residues in length. Members of this family are largely found in Salmonella and Yersinia species and several have been described as being putative cytoplasmic proteins. The function of this family is unknown.
Probab=30.54 E-value=24 Score=29.97 Aligned_cols=13 Identities=31% Similarity=0.930 Sum_probs=6.3
Q ss_pred hHHHHHHhcCcEE
Q psy1953 349 GVLAKAMRLGYWI 361 (379)
Q Consensus 349 g~l~~a~r~g~w~ 361 (379)
|-|++|+|.|+|+
T Consensus 97 ~ML~esakaGrWl 109 (111)
T PF07377_consen 97 GMLIESAKAGRWL 109 (111)
T ss_pred HHHHHHHHcCCcc
Confidence 3444555555554
No 202
>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.
Probab=30.37 E-value=38 Score=25.87 Aligned_cols=15 Identities=47% Similarity=0.691 Sum_probs=13.4
Q ss_pred HHHHHhhCCHHHHHH
Q psy1953 42 KNLKAYHNSPQYLAY 56 (379)
Q Consensus 42 ~~~k~yhnSpay~ay 56 (379)
++.++++|||+||+.
T Consensus 50 ~aa~~~~~speYq~~ 64 (65)
T PF07045_consen 50 EAAKAWYNSPEYQAL 64 (65)
T ss_dssp HHHHHHHCSHHHHHH
T ss_pred HHHHHHHCCHhHHhh
Confidence 789999999999983
No 203
>KOG0971|consensus
Probab=30.26 E-value=2e+02 Score=33.74 Aligned_cols=76 Identities=18% Similarity=0.284 Sum_probs=44.3
Q ss_pred cchHHHHHHHhc--CCCCCCccchh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHhc
Q psy1953 115 LRNHRLINEIFS--DSVVPDVRSVV-TTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESS--EQFQEELK 189 (379)
Q Consensus 115 dRNhrLmsELfs--d~vVpd~rS~v-t~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~s--Ekf~~ELK 189 (379)
+-|.||...|+. |..-.++.... +.+.++..+..+.+|....++|..+++.+|......|.++.... |+....|-
T Consensus 375 qqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLt 454 (1243)
T KOG0971|consen 375 QQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLT 454 (1243)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Confidence 357888888876 22222222222 23446667777777777777777777777777666554444442 44555443
Q ss_pred C
Q psy1953 190 K 190 (379)
Q Consensus 190 K 190 (379)
.
T Consensus 455 d 455 (1243)
T KOG0971|consen 455 D 455 (1243)
T ss_pred h
Confidence 3
No 204
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=30.26 E-value=39 Score=26.80 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=19.0
Q ss_pred hHHHHHHHhhCCHHHHHHHHHHHH
Q psy1953 39 EYEKNLKAYHNSPQYLAYMAAKAK 62 (379)
Q Consensus 39 eY~~~~k~yhnSpay~ayi~aK~r 62 (379)
+=.+.+++|.++|+|++++ ++.+
T Consensus 62 ~s~~~l~~Y~~hp~H~~~~-~~~~ 84 (97)
T PF07876_consen 62 ESEEDLDAYQTHPAHQAFV-EFLK 84 (97)
T ss_dssp SSHHHHHHHHTSHHHHHHH-HHHH
T ss_pred CCHHHHHHHHcCHHHHHHH-HHHH
Confidence 5668999999999999988 4443
No 205
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=30.24 E-value=3.3e+02 Score=28.03 Aligned_cols=55 Identities=20% Similarity=0.396 Sum_probs=35.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC-CCCCch
Q psy1953 137 VTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK-PGMGPE 196 (379)
Q Consensus 137 vt~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~sEkf~~ELKK-~~vdeE 196 (379)
+..+++-.|.+++++|+.+..+++.+|+.+..+ -+|..+..++.+.|-. -.||.+
T Consensus 172 ~~~D~v~LLqkk~~~l~~~l~~~~~eL~~~~k~-----L~faqekn~LlqslLddaniD~~ 227 (323)
T PF08537_consen 172 SNSDRVILLQKKIDELEERLNDLEKELEITKKD-----LKFAQEKNALLQSLLDDANIDSE 227 (323)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhhcccHH
Confidence 456888889999999998888888888865433 2444444444444433 555553
No 206
>PHA02047 phage lambda Rz1-like protein
Probab=30.02 E-value=2.8e+02 Score=23.98 Aligned_cols=29 Identities=14% Similarity=0.306 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 141 RMQVLKRQVQSLTMHQKKLEAELQQIEEK 169 (379)
Q Consensus 141 Riq~LkkQVqsL~~eQeKLeaELqqlEee 169 (379)
+.+.+..|++.++.+...++..++.++++
T Consensus 35 ~a~~la~qLE~a~~r~~~~Q~~V~~l~~k 63 (101)
T PHA02047 35 EAKRQTARLEALEVRYATLQRHVQAVEAR 63 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666666666655
No 207
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=29.80 E-value=39 Score=32.36 Aligned_cols=32 Identities=28% Similarity=0.115 Sum_probs=25.6
Q ss_pred EeechHHHHHHhcCcEEEEeccccCChhhhhhhc
Q psy1953 345 VFQEGVLAKAMRLGYWIILDELNLAPLPFLLYLL 378 (379)
Q Consensus 345 ~~~eg~l~~a~r~g~w~~ldelnlA~~~vl~~l~ 378 (379)
.+..|.+..| .+=-+.|||+|+-+..||+.|+
T Consensus 96 ~~~PGeislA--h~GVLflDE~~ef~~~vld~Lr 127 (206)
T PF01078_consen 96 PPRPGEISLA--HRGVLFLDELNEFDRSVLDALR 127 (206)
T ss_dssp GEEE-CGGGG--TTSEEEECETTTS-HHHHHHHH
T ss_pred CCCcCHHHHh--cCCEEEechhhhcCHHHHHHHH
Confidence 7888888766 5568999999999999999986
No 208
>KOG4715|consensus
Probab=29.70 E-value=1e+02 Score=31.74 Aligned_cols=32 Identities=25% Similarity=0.256 Sum_probs=15.6
Q ss_pred CCCCCccchhhhhHHHHHHHHHHHHHHHHHHH
Q psy1953 128 SVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKL 159 (379)
Q Consensus 128 ~vVpd~rS~vt~dRiq~LkkQVqsL~~eQeKL 159 (379)
.||...|..+...+.+.|--+-..|+.+...+
T Consensus 216 sVVtt~RMqvlkrQv~SL~~HQ~KLEaEL~q~ 247 (410)
T KOG4715|consen 216 SVVTTARMQVLKRQVQSLMVHQRKLEAELLQI 247 (410)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665555454444444444444444443333
No 209
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=29.66 E-value=2.1e+02 Score=31.37 Aligned_cols=39 Identities=13% Similarity=0.319 Sum_probs=29.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 137 VTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKR 175 (379)
Q Consensus 137 vt~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKr 175 (379)
...+.+..++++++++..+.+++++++.++..++.....
T Consensus 212 ~p~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~ 250 (646)
T PRK05771 212 TPSELIREIKEELEEIEKERESLLEELKELAKKYLEELL 250 (646)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345668888999999999888888888887776654443
No 210
>KOG1984|consensus
Probab=29.59 E-value=5.4e+02 Score=30.15 Aligned_cols=8 Identities=50% Similarity=0.638 Sum_probs=3.0
Q ss_pred CCCCCCCC
Q psy1953 283 LAPRPPHG 290 (379)
Q Consensus 283 ~~~~~~~~ 290 (379)
.+|+|.++
T Consensus 203 ~~p~p~~p 210 (1007)
T KOG1984|consen 203 GAPRPSGP 210 (1007)
T ss_pred CCCCCCCC
Confidence 33344333
No 211
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=29.45 E-value=1.9e+02 Score=26.90 Aligned_cols=35 Identities=26% Similarity=0.407 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKK 174 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKK 174 (379)
..+..|+.++..|..++.+|..++..++++|....
T Consensus 111 ~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~ 145 (161)
T TIGR02894 111 NQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLI 145 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888888888888888888887655
No 212
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=29.42 E-value=1.5e+02 Score=30.69 Aligned_cols=29 Identities=21% Similarity=0.367 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 139 TNRMQVLKRQVQSLTMHQKKLEAELQQIE 167 (379)
Q Consensus 139 ~dRiq~LkkQVqsL~~eQeKLeaELqqlE 167 (379)
...+..++.++.++..+.++|++.|++..
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~ 269 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNP 269 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 34577777777777777777777765544
No 213
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=29.39 E-value=4.1e+02 Score=24.25 Aligned_cols=53 Identities=32% Similarity=0.421 Sum_probs=30.8
Q ss_pred ccccchHHHHHHHhcCCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 112 ARYLRNHRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEA 172 (379)
Q Consensus 112 arfdRNhrLmsELfsd~vVpd~rS~vt~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqe 172 (379)
-+=+...+|.++|... ++....|+.++.+|..|.....+|...+..+......
T Consensus 47 wr~~ee~rly~~~~~~--------~v~~kele~~~~qv~~Lr~~e~~le~~~~~a~~~~~~ 99 (152)
T PF07321_consen 47 WRQREEERLYAEIQGK--------VVSLKELEKWQQQVASLREREAELEQQLAEAEEQLEQ 99 (152)
T ss_pred HHHHHHHHHHHHHHHh--------HhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3455677777777653 3444456666666666666666665555554444433
No 214
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=29.38 E-value=2.2e+02 Score=28.49 Aligned_cols=34 Identities=15% Similarity=0.178 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 139 TNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEA 172 (379)
Q Consensus 139 ~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqe 172 (379)
..+|+.+..+|++...+|+.|..+|+..+.+|..
T Consensus 249 L~kf~~~~~~i~~~~~~Q~~ll~~i~~~~~~f~~ 282 (342)
T cd08915 249 LKKFDKDLTYVEKTKKKQIELIKEIDAANQEFSQ 282 (342)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3559999999999999999999999999999864
No 215
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=29.33 E-value=3.4e+02 Score=23.88 Aligned_cols=33 Identities=30% Similarity=0.383 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKK 174 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKK 174 (379)
+..+...++.|..+.+.++.++..++.+....+
T Consensus 68 ~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~ 100 (151)
T PF11559_consen 68 IERLQNDVERLKEQLEELERELASAEEKERQLQ 100 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555554444444333
No 216
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=29.28 E-value=63 Score=28.65 Aligned_cols=30 Identities=20% Similarity=0.492 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFE 171 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefq 171 (379)
+..+.+++.++.....++.++++....+..
T Consensus 20 l~~l~~~~~~l~~~~~r~~ae~en~~~r~~ 49 (165)
T PF01025_consen 20 LEELEKEIEELKERLLRLQAEFENYRKRLE 49 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666665555555555554444443
No 217
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=29.07 E-value=9.4e+02 Score=27.72 Aligned_cols=7 Identities=43% Similarity=0.999 Sum_probs=3.2
Q ss_pred cc-ccccC
Q psy1953 3 SC-QFQNG 9 (379)
Q Consensus 3 ~~-~f~~~ 9 (379)
|| .|..+
T Consensus 77 sC~~~~~g 84 (824)
T PRK07764 77 SCVALAPG 84 (824)
T ss_pred HHHHHHcC
Confidence 56 44444
No 218
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=28.93 E-value=1.6e+02 Score=30.14 Aligned_cols=48 Identities=23% Similarity=0.338 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~sEkf~~ELKK 190 (379)
+..+.+++.++..+.+.|+..++.+..+....+.++.+. ++.++.|+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 50 (389)
T PRK03992 3 LEALEERNSELEEQIRQLELKLRDLEAENEKLERELERL-KSELEKLKS 50 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhC
Confidence 344555555555556666666665555544333333322 333444444
No 219
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=28.90 E-value=1.5e+02 Score=26.01 Aligned_cols=29 Identities=14% Similarity=0.370 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKL-EAELQQIEEKF 170 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKL-eaELqqlEeef 170 (379)
|..|..++..++.-+++. ..+|++-++-|
T Consensus 9 IkdLeselsk~Ktsq~d~~~~eLEkYkqly 38 (111)
T PF12001_consen 9 IKDLESELSKMKTSQEDSNKTELEKYKQLY 38 (111)
T ss_pred HHHHHHHHHHhHhHhhhhhHHHHHHHHHHH
Confidence 333444443333333333 33444433333
No 220
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=28.86 E-value=2.6e+02 Score=23.92 Aligned_cols=26 Identities=12% Similarity=0.472 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIE 167 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlE 167 (379)
+..+.+|++.+..+.+.|+..++.++
T Consensus 82 ~~~l~~~~~~l~~~~~~l~~~~~~L~ 107 (118)
T cd04776 82 LEKIEKRRAELEQQRRDIDAALAELD 107 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443333
No 221
>PRK09039 hypothetical protein; Validated
Probab=28.82 E-value=2e+02 Score=29.24 Aligned_cols=38 Identities=18% Similarity=0.291 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKF 177 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~ 177 (379)
.+|..|++|+..+......++......+.++.+.++++
T Consensus 144 ~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L 181 (343)
T PRK09039 144 QQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRL 181 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44777777777776666666555554444444443333
No 222
>PRK14144 heat shock protein GrpE; Provisional
Probab=28.79 E-value=2.4e+02 Score=26.96 Aligned_cols=39 Identities=10% Similarity=0.098 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVES 180 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~ 180 (379)
+..+..++..+..+..++...+.++.++|..-+++..++
T Consensus 47 ~~~l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE 85 (199)
T PRK14144 47 YTALEEQLTLAEQKAHENWEKSVRALAELENVRRRMERE 85 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555566666665544444444
No 223
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=28.76 E-value=2.8e+02 Score=21.52 Aligned_cols=29 Identities=10% Similarity=0.394 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKF 170 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeef 170 (379)
+..+...+..+..+++++..+++.+++-.
T Consensus 9 ~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 9 LPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555443
No 224
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=28.60 E-value=4.3e+02 Score=28.03 Aligned_cols=18 Identities=22% Similarity=0.229 Sum_probs=9.5
Q ss_pred cccccccchHHHHHHHhc
Q psy1953 109 VAYARYLRNHRLINEIFS 126 (379)
Q Consensus 109 laaarfdRNhrLmsELfs 126 (379)
|....++.+..-|.++|+
T Consensus 183 V~nl~~~~tee~L~~~F~ 200 (562)
T TIGR01628 183 VKNLDPSVNEDKLRELFA 200 (562)
T ss_pred EeCCCCcCCHHHHHHHHH
Confidence 333445555555566655
No 225
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=28.57 E-value=1.8e+02 Score=27.72 Aligned_cols=34 Identities=32% Similarity=0.510 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 139 TNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEA 172 (379)
Q Consensus 139 ~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqe 172 (379)
..+...|.+++..+..++++++..++..++++..
T Consensus 192 ~~~~~~l~~~~~~~~~~i~~~~~rl~~~~~~l~~ 225 (239)
T PF07195_consen 192 TSRIDSLNSQIKSLDKQIEDLEERLESKEERLRK 225 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777777777777777766666654
No 226
>KOG4590|consensus
Probab=28.07 E-value=1.6e+02 Score=31.11 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=8.2
Q ss_pred cCcEEEEeccccCChhh
Q psy1953 357 LGYWIILDELNLAPLPF 373 (379)
Q Consensus 357 ~g~w~~ldelnlA~~~v 373 (379)
++.|+.|+.|.+--.++
T Consensus 366 ~~~~l~l~~L~~~~~~i 382 (409)
T KOG4590|consen 366 CSRWLALDDLSRLKPCI 382 (409)
T ss_pred ccccchhhhhhhhhhhh
Confidence 34455555555444443
No 227
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=28.03 E-value=1.8e+02 Score=32.90 Aligned_cols=8 Identities=38% Similarity=0.630 Sum_probs=3.3
Q ss_pred hHHHHHHh
Q psy1953 349 GVLAKAMR 356 (379)
Q Consensus 349 g~l~~a~r 356 (379)
|+|-++++
T Consensus 734 G~Lr~~v~ 741 (771)
T TIGR01069 734 GKLRKGVQ 741 (771)
T ss_pred hHHHHHHH
Confidence 44444443
No 228
>PF02162 XYPPX: XYPPX repeat (two copies); InterPro: IPR006031 This repeat is found in a wide variety of proteins and generally consists of the motif XYPPX where X can be any amino acid. The family includes annexin VII ANX7_DICDI, the carboxy tail of certain rhodopsins OPSD_LOLSU. This family also includes plaque matrix proteins, however this motif is embedded in a ten residue repeat in FP1_MYTED. The molecular function of this repeat is unknown. It is also not clear is all the members of this family share a common evolutionary ancestor due to its short length and biased amino acid composition.
Probab=27.99 E-value=47 Score=19.40 Aligned_cols=12 Identities=33% Similarity=0.664 Sum_probs=5.6
Q ss_pred CCCCCCCCCCCC
Q psy1953 300 PTHPYYGNAYPY 311 (379)
Q Consensus 300 ~~~~~~~~~~~~ 311 (379)
|+.-|+.+.|||
T Consensus 3 ppqG~pPQ~~Pp 14 (15)
T PF02162_consen 3 PPQGYPPQGYPP 14 (15)
T ss_pred CCcCCCCCCCCC
Confidence 344444455554
No 229
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=27.77 E-value=3.2e+02 Score=21.91 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFV 178 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~ 178 (379)
++.+.+++..+..+..++..+.+.+-+...++..++.
T Consensus 35 i~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~ 71 (90)
T PF06103_consen 35 IDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVD 71 (90)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4444444444444444444444444444444443333
No 230
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=27.76 E-value=1e+02 Score=24.99 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=20.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 136 VVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEE 168 (379)
Q Consensus 136 ~vt~dRiq~LkkQVqsL~~eQeKLeaELqqlEe 168 (379)
.|+...++..+.-+..+..+.+.|++.|..+|+
T Consensus 46 lVtREEFd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 46 LVTREEFDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355566666666666666666666666666553
No 231
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=27.73 E-value=59 Score=27.84 Aligned_cols=18 Identities=33% Similarity=0.409 Sum_probs=14.3
Q ss_pred HHHHHhhCCHHHHHHHHH
Q psy1953 42 KNLKAYHNSPQYLAYMAA 59 (379)
Q Consensus 42 ~~~k~yhnSpay~ayi~a 59 (379)
+..+++.|||+||+.+.+
T Consensus 64 ~~ar~~y~SpeYq~a~~~ 81 (96)
T COG5470 64 EAARDCYNSPEYQAAAAI 81 (96)
T ss_pred HHHHHHhcCHHHHHHHHH
Confidence 577888899999995544
No 232
>PRK14147 heat shock protein GrpE; Provisional
Probab=27.64 E-value=2.1e+02 Score=26.49 Aligned_cols=36 Identities=19% Similarity=0.334 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1953 145 LKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVES 180 (379)
Q Consensus 145 LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~ 180 (379)
+..++..+..+.+++...+.++.++|..-+++..++
T Consensus 23 l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE 58 (172)
T PRK14147 23 LKAEVESLRSEIALVKADALRERADLENQRKRIARD 58 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555555555555444444333
No 233
>KOG2391|consensus
Probab=27.62 E-value=2.5e+02 Score=29.21 Aligned_cols=38 Identities=21% Similarity=0.289 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1953 144 VLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESS 181 (379)
Q Consensus 144 ~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~s 181 (379)
.++.++++-...+..+.+.|.+-+++..+.++++++..
T Consensus 218 klR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~ 255 (365)
T KOG2391|consen 218 KLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMK 255 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHH
Confidence 33444444444444455555555555554444444443
No 234
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=27.58 E-value=15 Score=33.42 Aligned_cols=45 Identities=27% Similarity=0.225 Sum_probs=30.8
Q ss_pred CcccccCCCCceEEeechHHHHHHhcCcEEEEeccccCChhhhhhhc
Q psy1953 332 PHQNCAHPETGQLVFQEGVLAKAMRLGYWIILDELNLAPLPFLLYLL 378 (379)
Q Consensus 332 ~~g~~~~~~~g~~~~~eg~l~~a~r~g~w~~ldelnlA~~~vl~~l~ 378 (379)
++|.....-.|.-..+.|.|-+| +|-.|+||||+..|.++-..||
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~~A--~~GtL~Ld~I~~L~~~~Q~~Ll 114 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLEQA--NGGTLFLDEIEDLPPELQAKLL 114 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHHHT--TTSEEEEETGGGS-HHHHHHHH
T ss_pred hhccccccccccccccCCceeec--cceEEeecchhhhHHHHHHHHH
Confidence 56654322234445566877665 6778999999999999988875
No 235
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=27.45 E-value=1.3e+02 Score=33.56 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQI 166 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqql 166 (379)
+..|+..+.+++..+++|+.+|.++
T Consensus 438 ~~~L~~~~ee~k~eie~L~~~l~~~ 462 (652)
T COG2433 438 NSELKRELEELKREIEKLESELERF 462 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444445554444443
No 236
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=27.43 E-value=1.1e+02 Score=28.52 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1953 143 QVLKRQVQSLTMHQKKLEAELQ 164 (379)
Q Consensus 143 q~LkkQVqsL~~eQeKLeaELq 164 (379)
+.+..++....+++.-|+.||+
T Consensus 3 eD~EsklN~AIERnalLE~ELd 24 (166)
T PF04880_consen 3 EDFESKLNQAIERNALLESELD 24 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHH
Confidence 3444555555566666666663
No 237
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=27.35 E-value=2.7e+02 Score=28.59 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1953 156 QKKLEAELQQIEEKFEAKKRKFVES 180 (379)
Q Consensus 156 QeKLeaELqqlEeefqeKKrK~~E~ 180 (379)
.++.+.-|..++++|.+....+...
T Consensus 352 l~~~~~~L~~ve~~~~~N~~~i~~n 376 (388)
T PF04912_consen 352 LKKWEELLNKVEEKFKENMETIEKN 376 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444333333
No 238
>KOG3850|consensus
Probab=27.30 E-value=2.5e+02 Score=29.85 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=13.0
Q ss_pred HHHHHHHHhHHHHHHHhcC
Q psy1953 172 AKKRKFVESSEQFQEELKK 190 (379)
Q Consensus 172 eKKrK~~E~sEkf~~ELKK 190 (379)
++-|.+.|.+|.+...+.|
T Consensus 346 ERaRdIqEalEscqtrisK 364 (455)
T KOG3850|consen 346 ERARDIQEALESCQTRISK 364 (455)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777766
No 239
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=27.17 E-value=37 Score=31.02 Aligned_cols=17 Identities=47% Similarity=0.685 Sum_probs=13.3
Q ss_pred HHHhcC--cEEEEeccccC
Q psy1953 353 KAMRLG--YWIILDELNLA 369 (379)
Q Consensus 353 ~a~r~g--~w~~ldelnlA 369 (379)
++++.| +-|||||||.|
T Consensus 89 ~~~~~~~~dLlVLDEi~~a 107 (159)
T cd00561 89 EAIASGEYDLVILDEINYA 107 (159)
T ss_pred HHHhcCCCCEEEEechHhH
Confidence 445555 78999999988
No 240
>KOG3859|consensus
Probab=27.09 E-value=3.9e+02 Score=27.63 Aligned_cols=19 Identities=16% Similarity=0.413 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy1953 161 AELQQIEEKFEAKKRKFVE 179 (379)
Q Consensus 161 aELqqlEeefqeKKrK~~E 179 (379)
++.+++...|++.|+|+++
T Consensus 366 ~kf~~lkr~h~eEk~kle~ 384 (406)
T KOG3859|consen 366 EKFDRLKRLHQEEKKKLEE 384 (406)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444443
No 241
>KOG0288|consensus
Probab=27.02 E-value=1.5e+02 Score=31.56 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEE 168 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEe 168 (379)
+..++.+++..+....+|++|..++.+
T Consensus 43 ~~ai~a~~~~~E~~l~~Lq~e~~~l~e 69 (459)
T KOG0288|consen 43 SRAIKAKLQEKELELNRLQEENTQLNE 69 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443333
No 242
>COG1359 Uncharacterized conserved protein [Function unknown]
Probab=26.85 E-value=54 Score=27.07 Aligned_cols=34 Identities=24% Similarity=0.249 Sum_probs=22.9
Q ss_pred cCCCcccccchh-hH--HHHHHHhhCCHHHHHHHHHH
Q psy1953 27 SKIPQCNENNFS-EY--EKNLKAYHNSPQYLAYMAAK 60 (379)
Q Consensus 27 ~~l~d~ek~~~~-eY--~~~~k~yhnSpay~ayi~aK 60 (379)
||..+.....+. .| +.++++|.+||.|++|+.+-
T Consensus 44 ~d~~~~~~~~~~E~w~d~~A~~~H~~s~h~~~~~~~~ 80 (100)
T COG1359 44 RDPDNPGRFVLIEVWEDEAALDAHLQSPHFQAFVAAL 80 (100)
T ss_pred EeCCCCCEEEEEEEECCHHHHHHHhCCHHHHHHHHhC
Confidence 444444433322 34 47999999999999998653
No 243
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=26.84 E-value=3.8e+02 Score=22.42 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1953 149 VQSLTMHQKKLEAELQQIEEKF 170 (379)
Q Consensus 149 VqsL~~eQeKLeaELqqlEeef 170 (379)
+..|+.++..|..+|..+-+..
T Consensus 42 LD~LE~rnD~l~~~L~~LLesn 63 (83)
T PF03670_consen 42 LDHLEQRNDHLHAQLQELLESN 63 (83)
T ss_pred HHHHHHhhhHHHHHHHHHHHHH
Confidence 3344445555555555444433
No 244
>KOG0804|consensus
Probab=26.80 E-value=2.1e+02 Score=30.87 Aligned_cols=9 Identities=11% Similarity=0.316 Sum_probs=3.6
Q ss_pred HHHHHHhcC
Q psy1953 182 EQFQEELKK 190 (379)
Q Consensus 182 Ekf~~ELKK 190 (379)
|+.+++|+.
T Consensus 434 d~~I~dLqE 442 (493)
T KOG0804|consen 434 DEKITDLQE 442 (493)
T ss_pred HHHHHHHHH
Confidence 333444433
No 245
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=26.73 E-value=2.3e+02 Score=28.71 Aligned_cols=33 Identities=15% Similarity=0.243 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKK 174 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKK 174 (379)
+..++.++.++..+.+....++..++++..+..
T Consensus 206 L~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~ 238 (312)
T smart00787 206 LDRAKEKLKKLLQEIMIKVKKLEELEEELQELE 238 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444333
No 246
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=26.70 E-value=2.8e+02 Score=21.09 Aligned_cols=37 Identities=19% Similarity=0.533 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESS 181 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~s 181 (379)
++.|.+++.+|.. ..+.||+.+..+|+.|.+=+.+..
T Consensus 10 ~~eL~~rl~~LD~---~ME~Eieelr~RY~~KRqPIldAi 46 (49)
T PF11629_consen 10 YEELQQRLASLDP---EMEQEIEELRQRYQAKRQPILDAI 46 (49)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCH---HHHHHHHHHHHHHHHhhccHHHHH
Confidence 5667776666654 567788889999998887776653
No 247
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=26.69 E-value=2.5e+02 Score=25.95 Aligned_cols=16 Identities=25% Similarity=0.491 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1953 152 LTMHQKKLEAELQQIE 167 (379)
Q Consensus 152 L~~eQeKLeaELqqlE 167 (379)
+..+...|+.++..++
T Consensus 121 l~~~~~~L~~~~~~l~ 136 (194)
T PF08614_consen 121 LEAELAQLEEKIKDLE 136 (194)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 248
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=26.49 E-value=4.5e+02 Score=23.54 Aligned_cols=56 Identities=11% Similarity=0.316 Sum_probs=35.5
Q ss_pred HHHHHHHhcCCCCCCcc--------------chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 118 HRLINEIFSDSVVPDVR--------------SVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAK 173 (379)
Q Consensus 118 hrLmsELfsd~vVpd~r--------------S~vt~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeK 173 (379)
-+.|..|.+.+.|-... ...+...+..++.++.+|..+...|..++..++.++...
T Consensus 36 ~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 36 QKALDSLVEEGKIVEKEYGKQKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKSLEAELASL 105 (169)
T ss_pred HHHHHHHHhCCCeeeeeecceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777765553211 112334577777777888888888888877777777643
No 249
>KOG0971|consensus
Probab=26.47 E-value=2.2e+02 Score=33.40 Aligned_cols=35 Identities=17% Similarity=0.456 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC
Q psy1953 156 QKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190 (379)
Q Consensus 156 QeKLeaELqqlEeefqeKKrK~~E~sEkf~~ELKK 190 (379)
.+++++.+++++..+..|...|.++++.+..+++.
T Consensus 1003 v~~~~ek~ee~~a~lr~Ke~efeetmdaLq~di~~ 1037 (1243)
T KOG0971|consen 1003 VEKVQEKLEETQALLRKKEKEFEETMDALQADIDQ 1037 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666667777777777766665
No 250
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=26.45 E-value=3.5e+02 Score=24.08 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKF 170 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeef 170 (379)
...|.+++.......+.|++++.+.+..+
T Consensus 29 ~~~LE~qL~~~~~~l~lLq~e~~~~e~~l 57 (160)
T PF13094_consen 29 KRALERQLAANLHQLELLQEEIEKEEAAL 57 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433444444444444444333
No 251
>KOG4603|consensus
Probab=26.36 E-value=2.8e+02 Score=26.41 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIE 167 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlE 167 (379)
..|..|..++++|....+.+++||..+.
T Consensus 86 ~~i~~l~ek~q~l~~t~s~veaEik~L~ 113 (201)
T KOG4603|consen 86 GKIVALTEKVQSLQQTCSYVEAEIKELS 113 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3366666666666666666666666443
No 252
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=26.35 E-value=2.3e+02 Score=23.69 Aligned_cols=36 Identities=19% Similarity=0.516 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKF 177 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~ 177 (379)
...+++++..+....++++.++..++++..+-+..+
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l 124 (129)
T cd00890 89 IEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677777777777777777777666665544433
No 253
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=26.31 E-value=62 Score=34.92 Aligned_cols=32 Identities=13% Similarity=0.453 Sum_probs=23.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 138 TTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKF 170 (379)
Q Consensus 138 t~dRiq~LkkQVqsL~~eQeKLeaELqqlEeef 170 (379)
..++++.++ |+++|++++++|++++..++.+.
T Consensus 23 ~~~~~~~~q-kie~L~kql~~Lk~q~~~l~~~v 54 (489)
T PF11853_consen 23 MADDIDLLQ-KIEALKKQLEELKAQQDDLNDRV 54 (489)
T ss_pred hhhhhHHHH-HHHHHHHHHHHHHHhhccccccc
Confidence 345566677 88888888888888888555543
No 254
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=26.22 E-value=45 Score=35.71 Aligned_cols=33 Identities=24% Similarity=0.074 Sum_probs=26.9
Q ss_pred EEeechHHHHHHhcCcEEEEeccccCChhhhhhhc
Q psy1953 344 LVFQEGVLAKAMRLGYWIILDELNLAPLPFLLYLL 378 (379)
Q Consensus 344 ~~~~eg~l~~a~r~g~w~~ldelnlA~~~vl~~l~ 378 (379)
...+.|.+..| .|-.|.|||++..+.++++.|+
T Consensus 284 ~~~~pG~i~lA--~~GvLfLDEi~e~~~~~~~~L~ 316 (499)
T TIGR00368 284 PIPLPGEISLA--HNGVLFLDELPEFKRSVLDALR 316 (499)
T ss_pred cccchhhhhcc--CCCeEecCChhhCCHHHHHHHH
Confidence 44678877655 6679999999999999999875
No 255
>KOG3248|consensus
Probab=26.12 E-value=39 Score=34.98 Aligned_cols=49 Identities=12% Similarity=0.219 Sum_probs=34.6
Q ss_pred hhhhhhccc-cCCCcccccchhhH-----HHHHHHhhCCHHHHHHHHHHHHhHHh
Q psy1953 18 CYGQSIGGC-SKIPQCNENNFSEY-----EKNLKAYHNSPQYLAYMAAKAKGKQA 66 (379)
Q Consensus 18 eigKiig~m-~~l~d~ek~~~~eY-----~~~~k~yhnSpay~ayi~aK~ra~~~ 66 (379)
+|.+|+|.. -+|+-||..-|-|- +--|..|-.=.|--+|-..|+|.+-.
T Consensus 221 aiNqiLGrRWH~LSrEEQAKYyElArKerqlH~qlYP~WSARdNYgKKkKrkReK 275 (421)
T KOG3248|consen 221 AINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 275 (421)
T ss_pred HHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCcchhhhhhhhhhhhhhc
Confidence 689999999 99999998876422 22344666666777777666665544
No 256
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=26.11 E-value=3.5e+02 Score=25.98 Aligned_cols=53 Identities=15% Similarity=0.140 Sum_probs=31.2
Q ss_pred ccccchHHHHHHHhcCCCCCCcc--chhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 112 ARYLRNHRLINEIFSDSVVPDVR--SVVTTNRMQVLKRQVQSLTMHQKKLEAELQ 164 (379)
Q Consensus 112 arfdRNhrLmsELfsd~vVpd~r--S~vt~dRiq~LkkQVqsL~~eQeKLeaELq 164 (379)
+..++-..|+.+|-+-+.|.... +..-..+|-.+..++..++.+.++|.+-|+
T Consensus 102 VP~~~~~~~l~~l~~~g~v~~~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ 156 (262)
T PF14257_consen 102 VPADKFDSFLDELSELGKVTSRNISSEDVTEQYVDLEARLKNLEAEEERLLELLE 156 (262)
T ss_pred ECHHHHHHHHHHHhccCceeeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667888888766664332 111234466666666666666666665554
No 257
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=26.10 E-value=2.5e+02 Score=28.05 Aligned_cols=49 Identities=27% Similarity=0.525 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHhHHHHHHHhcC
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKK----------RKFVESSEQFQEELKK 190 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKK----------rK~~E~sEkf~~ELKK 190 (379)
++..++++..+..+...|+.+|++...+....+ -.|.++.|++..||++
T Consensus 178 ~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~ 236 (267)
T PF10234_consen 178 LQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQK 236 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 444455555555554444444444333332222 2233444566666665
No 258
>PRK14141 heat shock protein GrpE; Provisional
Probab=26.05 E-value=2.3e+02 Score=27.25 Aligned_cols=30 Identities=20% Similarity=0.397 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEK 169 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEee 169 (379)
+++..+++++.++..+..++.++++-...+
T Consensus 38 ~~i~~le~e~~elkd~~lR~~Ae~eN~RKR 67 (209)
T PRK14141 38 DPLEALKAENAELKDRMLRLAAEMENLRKR 67 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666666655555555555543333
No 259
>COG3200 AroG 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=26.04 E-value=81 Score=33.04 Aligned_cols=34 Identities=32% Similarity=0.314 Sum_probs=25.6
Q ss_pred hHHHHHHHhhCCHHHHHHHHHHHHhHHhHHHHHH
Q psy1953 39 EYEKNLKAYHNSPQYLAYMAAKAKGKQAQQAAEE 72 (379)
Q Consensus 39 eY~~~~k~yhnSpay~ayi~aK~ra~~~~~~~~~ 72 (379)
.-++.+|+||||-|-++.|.|=...-.+.+++-+
T Consensus 150 dP~R~l~aY~qsaAtlNLlRafa~gG~A~L~~vh 183 (445)
T COG3200 150 DPERLLKAYAQSAATLNLLRAFASGGLADLENVH 183 (445)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 5678999999999999998887755555444443
No 260
>PF13388 DUF4106: Protein of unknown function (DUF4106)
Probab=25.98 E-value=3.4e+02 Score=28.03 Aligned_cols=116 Identities=22% Similarity=0.251 Sum_probs=54.4
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhHHhHHHHHHHHHHhhcCCCCCCCCcceecccCCCCccCCCccccccccccccchHHHH
Q psy1953 42 KNLKAYHNSPQYLAYMAAKAKGKQAQQAAEEREAQAQGFSGKNADRRIDIQPAEDEDEQEDGYSVKHVAYARYLRNHRLI 121 (379)
Q Consensus 42 ~~~k~yhnSpay~ayi~aK~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~iqpaeD~dD~dd~~S~k~laaarfdRNhrLm 121 (379)
|+||.-.---|--.||.|...|+++++--. -|.-||--||+. ...|-.+-|... .
T Consensus 3 kamksae~ikanndwldaqanakaaqligs---------------irtkiqadedss-------nealmnadfkna---f 57 (422)
T PF13388_consen 3 KAMKSAEYIKANNDWLDAQANAKAAQLIGS---------------IRTKIQADEDSS-------NEALMNADFKNA---F 57 (422)
T ss_pred hhhhhhHHHhccchhhhhhhhhHHHHHHHH---------------HHhhhhcccccc-------hhhhhcchHHHH---H
Confidence 445532222234578999888888754222 234566434432 233333333322 2
Q ss_pred HHHhcC-CCCCCccchhhh-hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy1953 122 NEIFSD-SVVPDVRSVVTT-NR-MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQ 183 (379)
Q Consensus 122 sELfsd-~vVpd~rS~vt~-dR-iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~sEk 183 (379)
.+|.+. -.|+|..|+... ++ ++.--+.|.+-+.++.+. +.-+.+...|..-.....|+.|+
T Consensus 58 ealhskvklvndfssgkklksegfdkelrevaqnmtkitda-atrqavqsaydavratvvesqek 121 (422)
T PF13388_consen 58 EALHSKVKLVNDFSSGKKLKSEGFDKELREVAQNMTKITDA-ATRQAVQSAYDAVRATVVESQEK 121 (422)
T ss_pred HHHHhhhhhhcccccccccccchhhHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHhHH
Confidence 233332 456666665443 21 333223333333333332 22344556666666666666554
No 261
>KOG4462|consensus
Probab=25.83 E-value=7.2e+02 Score=26.30 Aligned_cols=109 Identities=24% Similarity=0.375 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy1953 217 PPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPY 296 (379)
Q Consensus 217 ~~~~p~p~p~~~~~~~~~~~~~pppp~~p~~~~~ppppp~p~~~p~pP~~p~~~pp~~p~~~~~~~~~~~~~~~~~~~p~ 296 (379)
+++..++.|+++. .-+++|--.+++-+++++++++-.-.--..-++..+++.+--..-++-..++++.++-..+-
T Consensus 291 pP~~tsa~Pplp~-----~~PPPPvrd~p~r~ap~pppPPv~r~~sar~~P~pPp~~~~~ts~~P~~~~rpP~PPs~~~A 365 (437)
T KOG4462|consen 291 PPPPTSAAPPLPP-----KVPPPPVRDPPSRAAPAPPPPPVSRTGSARDAPAPPPPAPNVTSESPKSGNRPPPPPSRSPA 365 (437)
T ss_pred CCCCCCCCCCCCC-----CCCCCcccCcccccCCCCCCCccccccccccCCCCCCCcccccccCCCcCCCCCCCCCcccC
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCceEEeec
Q psy1953 297 PQYPTHPYYGNAYPYPQHMNAGRPPHYPPHPGSQHPHQNCAHPETGQLVFQE 348 (379)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ph~~~~~~~g~~~~~~~g~~~~~e 348 (379)
+-+|+.+ |- +.+++.|-...+ +.++.+++|.|..
T Consensus 366 ~~PPPPP------Ps--------~s~~~g~~~t~t----~~dd~esr~~fhp 399 (437)
T KOG4462|consen 366 PAPPPPP------PS--------ASYRPGQRPTRT----SADDDESRFSFHP 399 (437)
T ss_pred CCCCCCC------Cc--------cccCCCCCCccc----ccccccccccccc
No 262
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=25.79 E-value=1.7e+02 Score=28.96 Aligned_cols=39 Identities=15% Similarity=0.330 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVES 180 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~ 180 (379)
|...+.++.+|..+++.|++.+.++..++...+.+|.+.
T Consensus 165 ~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 165 YEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence 444455555555555555555555554444444455444
No 263
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=25.73 E-value=2.6e+02 Score=25.44 Aligned_cols=38 Identities=13% Similarity=0.397 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTM---HQKKLEAELQQIEEKFEAKKRKFVE 179 (379)
Q Consensus 142 iq~LkkQVqsL~~---eQeKLeaELqqlEeefqeKKrK~~E 179 (379)
+....+++.+|.. .++.|..+|+.+++++...+..++.
T Consensus 36 l~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~ 76 (155)
T PF06810_consen 36 LKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEA 76 (155)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444 3455555666666655544433333
No 264
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.72 E-value=1.4e+02 Score=28.96 Aligned_cols=47 Identities=28% Similarity=0.387 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q psy1953 142 MQVLKRQVQSLTMHQKKLE--AELQQIEEKFEAKKRKFVESSEQFQEEL 188 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLe--aELqqlEeefqeKKrK~~E~sEkf~~EL 188 (379)
|+..+.++..|..+.++-. .+|.+.++++..-+..|+..-+.+.+||
T Consensus 124 YD~~r~~~~kl~~K~~k~~~~~KL~kae~el~~Ak~~ye~~N~~L~~EL 172 (225)
T cd07590 124 YERLQAKVEKLAEKEKTGPNLAKLEQAEKALAAARADFEKQNIKLLEEL 172 (225)
T ss_pred HHHHHHHHHHHHhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666666666665544333 6777778888777766666655555655
No 265
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=25.72 E-value=7.5e+02 Score=25.45 Aligned_cols=48 Identities=17% Similarity=0.254 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC
Q psy1953 142 MQVLKRQVQSLTMHQKKL-----EAELQQIEEKFEAKKRKFVESSEQFQEELKK 190 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKL-----eaELqqlEeefqeKKrK~~E~sEkf~~ELKK 190 (379)
...++++.+++..+.-+. +.+|+.+.++..+.+|++.+. ++...+|++
T Consensus 265 ~m~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L-~k~l~~l~~ 317 (320)
T TIGR01834 265 LMRLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSL-KKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhh
Confidence 444455555444443332 456666666666655555554 444444443
No 266
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=25.71 E-value=3.7e+02 Score=23.61 Aligned_cols=24 Identities=17% Similarity=0.393 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQ 165 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqq 165 (379)
+..++.++..+......+.+||-+
T Consensus 32 ~~~l~~el~~l~~~r~~l~~Eiv~ 55 (120)
T PF12325_consen 32 LASLQEELARLEAERDELREEIVK 55 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443
No 267
>PRK14161 heat shock protein GrpE; Provisional
Probab=25.70 E-value=5.2e+02 Score=24.13 Aligned_cols=40 Identities=8% Similarity=0.303 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESS 181 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~s 181 (379)
+..+..++..++.+.+.+...+.++.++|..-+++..++.
T Consensus 21 ~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~ 60 (178)
T PRK14161 21 VETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKAR 60 (178)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777777777777777776665555553
No 268
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=25.51 E-value=1.8e+02 Score=30.12 Aligned_cols=17 Identities=6% Similarity=-0.083 Sum_probs=9.1
Q ss_pred chhhhhhhccCCcccCC
Q psy1953 195 PEGYLNRLSASPVLTAP 211 (379)
Q Consensus 195 eE~~~~~l~~r~v~~a~ 211 (379)
+|+...+|.+|.....+
T Consensus 310 Le~vK~emeerg~~mtD 326 (359)
T PF10498_consen 310 LEQVKQEMEERGSSMTD 326 (359)
T ss_pred HHHHHHHHHHhcCCCCC
Confidence 45555566665544443
No 269
>KOG4370|consensus
Probab=25.48 E-value=2.2e+02 Score=30.65 Aligned_cols=18 Identities=6% Similarity=-0.271 Sum_probs=15.9
Q ss_pred hhhhhhhhhccc-cCCCcc
Q psy1953 15 QANCYGQSIGGC-SKIPQC 32 (379)
Q Consensus 15 ~lweigKiig~m-~~l~d~ 32 (379)
+|||+..||.+. |.|..+
T Consensus 327 ~LwEvqri~tqlkrkLraq 345 (514)
T KOG4370|consen 327 WLWEVQRITTQLKRKLRAQ 345 (514)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 499999999999 999943
No 270
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=25.44 E-value=2.1e+02 Score=24.70 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 136 VVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKR 175 (379)
Q Consensus 136 ~vt~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKr 175 (379)
....+.+..|++++.+|..++..|.-|.+.+.+...+...
T Consensus 18 ~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 18 GQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 271
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=25.41 E-value=1.4e+02 Score=27.75 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRK 176 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK 176 (379)
-..|+..+..++.++.-|+.-|...+....+.|||
T Consensus 31 ~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrk 65 (162)
T PF04201_consen 31 REELRSELAKVEEEIQTLRQVLAAKERHCAELKRK 65 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45555555555555555555555555555555555
No 272
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=25.37 E-value=1.7e+02 Score=29.71 Aligned_cols=31 Identities=10% Similarity=0.274 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEA 172 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqe 172 (379)
+..-.+++++=..++.+|...|.+|.+.+.|
T Consensus 77 Lkes~~~l~dRetEI~eLksQL~RMrEDWIE 107 (305)
T PF15290_consen 77 LKESENRLHDRETEIDELKSQLARMREDWIE 107 (305)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444433
No 273
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=25.33 E-value=3.1e+02 Score=23.30 Aligned_cols=30 Identities=13% Similarity=0.284 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 139 TNRMQVLKRQVQSLTMHQKKLEAELQQIEE 168 (379)
Q Consensus 139 ~dRiq~LkkQVqsL~~eQeKLeaELqqlEe 168 (379)
..++..++++++.+..++++|..+++.++.
T Consensus 33 ~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 33 NDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 355888888888888888888888887765
No 274
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=25.12 E-value=3.4e+02 Score=26.24 Aligned_cols=49 Identities=14% Similarity=0.257 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q psy1953 139 TNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEEL 188 (379)
Q Consensus 139 ~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~sEkf~~EL 188 (379)
.+.|+.|++.|..++.+.+....++..+...|.....+.-.+ ....++|
T Consensus 31 Ys~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~s-QrEvn~L 79 (207)
T PF05546_consen 31 YSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSS-QREVNEL 79 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 567999999999999999999999998888887655444333 4555665
No 275
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=25.05 E-value=1.2e+02 Score=27.44 Aligned_cols=20 Identities=15% Similarity=0.213 Sum_probs=10.9
Q ss_pred HHHHhHHHHHHHhcC--CCCCc
Q psy1953 176 KFVESSEQFQEELKK--PGMGP 195 (379)
Q Consensus 176 K~~E~sEkf~~ELKK--~~vde 195 (379)
.....-+.|+.++.. ..||+
T Consensus 104 ~~~~~we~f~~e~~~~~~~vde 125 (145)
T PF14942_consen 104 QRKQEWEEFMKEQQQKKQRVDE 125 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 333444667776644 56664
No 276
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=25.02 E-value=42 Score=37.87 Aligned_cols=32 Identities=31% Similarity=0.351 Sum_probs=26.3
Q ss_pred echHHHHHHhcC--cEEEEeccccCChhhhhhhc
Q psy1953 347 QEGVLAKAMRLG--YWIILDELNLAPLPFLLYLL 378 (379)
Q Consensus 347 ~eg~l~~a~r~g--~w~~ldelnlA~~~vl~~l~ 378 (379)
..|.|+++++.- .-|+||||+.|..+|...||
T Consensus 545 ~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LL 578 (758)
T PRK11034 545 QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLL 578 (758)
T ss_pred ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHH
Confidence 346888888753 46999999999999998876
No 277
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=24.90 E-value=2.1e+02 Score=22.97 Aligned_cols=35 Identities=23% Similarity=0.400 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKK 174 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKK 174 (379)
..++.++.++.++...|..|...|++...++.+..
T Consensus 14 P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~ 48 (92)
T PF14712_consen 14 PDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELN 48 (92)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778888888999999999888888888876544
No 278
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=24.90 E-value=2.7e+02 Score=27.97 Aligned_cols=30 Identities=27% Similarity=0.457 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFE 171 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefq 171 (379)
+..++.++........+++.+++.++++..
T Consensus 218 L~~~~~~i~~~k~~l~el~~el~~l~~~i~ 247 (325)
T PF08317_consen 218 LAEQKEEIEAKKKELAELQEELEELEEKIE 247 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444433
No 279
>PF15058 Speriolin_N: Speriolin N terminus
Probab=24.71 E-value=1.4e+02 Score=28.68 Aligned_cols=31 Identities=23% Similarity=0.377 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 141 RMQVLKRQVQSLTMHQKKLEAELQQIEEKFE 171 (379)
Q Consensus 141 Riq~LkkQVqsL~~eQeKLeaELqqlEeefq 171 (379)
.|+.|+.|++.|+.++++|+..+.-+.+.++
T Consensus 6 ~yeGlrhqierLv~ENeeLKKlVrLirEN~e 36 (200)
T PF15058_consen 6 NYEGLRHQIERLVRENEELKKLVRLIRENHE 36 (200)
T ss_pred chHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4788889999999999999888887777665
No 280
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=24.70 E-value=1.5e+02 Score=30.42 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=18.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 138 TTNRMQVLKRQVQSLTMHQKKLEAELQQIEE 168 (379)
Q Consensus 138 t~dRiq~LkkQVqsL~~eQeKLeaELqqlEe 168 (379)
|.+.++.+-+++.+|+.++..|+.+|..++.
T Consensus 287 TRsElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 287 TRSELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4445666666666666666666666655543
No 281
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=24.68 E-value=2.9e+02 Score=21.98 Aligned_cols=18 Identities=11% Similarity=0.141 Sum_probs=8.7
Q ss_pred HHHHHHhcCCCCCchhhh
Q psy1953 182 EQFQEELKKPGMGPEGYL 199 (379)
Q Consensus 182 Ekf~~ELKK~~vdeE~~~ 199 (379)
+++...|.+...|.+++.
T Consensus 73 ~~l~~ll~~~~~D~~~i~ 90 (125)
T PF13801_consen 73 QELRALLAAPPPDEAAIE 90 (125)
T ss_dssp HHHHHHHCCSSS-HHHHH
T ss_pred HHHHHHHcCCCCCHHHHH
Confidence 344444555666655544
No 282
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=24.63 E-value=3.2e+02 Score=25.70 Aligned_cols=33 Identities=33% Similarity=0.489 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC
Q psy1953 158 KLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190 (379)
Q Consensus 158 KLeaELqqlEeefqeKKrK~~E~sEkf~~ELKK 190 (379)
.++.+|+.++.+...-+.+|++-++....||.+
T Consensus 147 ~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~r 179 (216)
T cd07627 147 SLLSELEEAERRASELKKEFEEVSELIKSELER 179 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555565555555555544
No 283
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=24.33 E-value=2.7e+02 Score=22.51 Aligned_cols=27 Identities=19% Similarity=0.445 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 146 KRQVQSLTMHQKKLEAELQQIEEKFEA 172 (379)
Q Consensus 146 kkQVqsL~~eQeKLeaELqqlEeefqe 172 (379)
.+.|..+..+.++|...+..++++++.
T Consensus 2 ~kdv~~l~~EkeeL~~klk~~qeel~~ 28 (69)
T PF08912_consen 2 TKDVANLAKEKEELNNKLKKQQEELQK 28 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666543
No 284
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=24.22 E-value=2.8e+02 Score=24.57 Aligned_cols=36 Identities=19% Similarity=0.418 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKF 177 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~ 177 (379)
.+.|+++++.|..+.+.|+..-.+++++|++.+.++
T Consensus 72 ~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i 107 (119)
T COG1382 72 VDELEERKETLELRIKTLEKQEEKLQERLEELQSEI 107 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554444444444444333
No 285
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=24.19 E-value=2.3e+02 Score=22.79 Aligned_cols=33 Identities=30% Similarity=0.501 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKK 174 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKK 174 (379)
+..|++++..+..+.++|..++..++.+..+.+
T Consensus 64 ~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~ 96 (106)
T PF01920_consen 64 IEELEERIEKLEKEIKKLEKQLKYLEKKLKELK 96 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555555555555544444333
No 286
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=24.16 E-value=3.4e+02 Score=23.53 Aligned_cols=41 Identities=17% Similarity=0.356 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVES 180 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~ 180 (379)
+.+..|++++..+....+++..+|..+..++.+....+.+.
T Consensus 94 eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l 134 (140)
T PRK03947 94 EAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQL 134 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44888888888888888888888888877776655555544
No 287
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=24.03 E-value=4.8e+02 Score=27.66 Aligned_cols=10 Identities=10% Similarity=0.487 Sum_probs=4.7
Q ss_pred cccccccchH
Q psy1953 109 VAYARYLRNH 118 (379)
Q Consensus 109 laaarfdRNh 118 (379)
.+.+.|....
T Consensus 221 ~afV~F~~~e 230 (562)
T TIGR01628 221 FAFVNFEKHE 230 (562)
T ss_pred EEEEEECCHH
Confidence 3445555443
No 288
>PRK14146 heat shock protein GrpE; Provisional
Probab=24.00 E-value=3e+02 Score=26.51 Aligned_cols=39 Identities=13% Similarity=0.235 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVES 180 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~ 180 (379)
+..+..++..+..+..+|...+.++.++|..-+++..++
T Consensus 56 ~~~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE 94 (215)
T PRK14146 56 ETSLQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQE 94 (215)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555556666666665544444444
No 289
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=23.91 E-value=2.4e+02 Score=31.96 Aligned_cols=56 Identities=27% Similarity=0.376 Sum_probs=40.0
Q ss_pred HHHhcC--CCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 122 NEIFSD--SVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKF 177 (379)
Q Consensus 122 sELfsd--~vVpd~rS~vt~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~ 177 (379)
.++++. +.|.|.=|....+.|+.|++|+.++..++..|...|+..+..+...+..+
T Consensus 245 ~~~~~p~~~lv~DLfSEl~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~al 302 (717)
T PF09730_consen 245 SESFSPAPSLVSDLFSELNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGAL 302 (717)
T ss_pred CCCCCCCCcccchhhhhcchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443 33555667778889999999999999998888888887666665444333
No 290
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=23.86 E-value=3.1e+02 Score=24.33 Aligned_cols=43 Identities=19% Similarity=0.347 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy1953 139 TNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQF 184 (379)
Q Consensus 139 ~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~sEkf 184 (379)
..+|..+++++..+.. .+..++.++.+.+.+....+....+.|
T Consensus 9 l~ki~~l~~~~~~i~~---~~~~~I~~i~~~~~~~~~~l~~~i~~l 51 (149)
T PF07352_consen 9 LRKIAELQREIARIEA---EANDEIARIKEWYEAEIAPLQNRIEYL 51 (149)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666555543 445555566666655555555444433
No 291
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=23.75 E-value=2.6e+02 Score=30.22 Aligned_cols=53 Identities=17% Similarity=0.248 Sum_probs=32.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC
Q psy1953 138 TTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190 (379)
Q Consensus 138 t~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~sEkf~~ELKK 190 (379)
...+++.+.++...|..++++|++....+..+.+........+.++.++.|+.
T Consensus 71 ~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~ 123 (472)
T TIGR03752 71 LRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKS 123 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45668888888888888888887766655555554443333333333344433
No 292
>PF02622 DUF179: Uncharacterized ACR, COG1678; InterPro: IPR003774 This entry describes proteins of unknown function.; PDB: 2DO8_A 2EW0_A 2GS5_A 2HRX_A 2AJ2_A 2HAF_A 2GZO_A.
Probab=23.72 E-value=79 Score=28.33 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=20.6
Q ss_pred ceEEeechHHHHHHhcCcEEEEe
Q psy1953 342 GQLVFQEGVLAKAMRLGYWIILD 364 (379)
Q Consensus 342 g~~~~~eg~l~~a~r~g~w~~ld 364 (379)
|...|..|-|-+-|++|.|++.+
T Consensus 116 GysgW~~gQLe~Ei~~g~W~~~~ 138 (161)
T PF02622_consen 116 GYSGWGPGQLEDEIARGSWLVAP 138 (161)
T ss_dssp EEEEECTTHHHHHHHTTTEEEEE
T ss_pred EECCCCHHHHHHHHHcCCEEEee
Confidence 44489999999999999999987
No 293
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=23.71 E-value=3.3e+02 Score=21.34 Aligned_cols=39 Identities=13% Similarity=0.344 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 138 TTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRK 176 (379)
Q Consensus 138 t~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK 176 (379)
.......+.+++++...++..|..+|..++.+..+.+.+
T Consensus 23 vk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~~ 61 (61)
T PF08826_consen 23 VKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRSR 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 294
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=23.71 E-value=3.2e+02 Score=24.02 Aligned_cols=34 Identities=21% Similarity=0.443 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC
Q psy1953 156 QKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190 (379)
Q Consensus 156 QeKLeaELqqlEeefqeKKrK~~E~sEkf~~ELKK 190 (379)
..+|+.+++.++.+|..... +.-+..+.++||+-
T Consensus 70 ~~~L~~el~~l~~ry~t~Le-llGEK~E~veEL~~ 103 (120)
T PF12325_consen 70 VEELEQELEELQQRYQTLLE-LLGEKSEEVEELRA 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHH
Confidence 33344444445555443332 22222455566654
No 295
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=23.60 E-value=4.1e+02 Score=23.78 Aligned_cols=31 Identities=29% Similarity=0.464 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKF 170 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEeef 170 (379)
..|..|.++++.+..+..+++..|..+....
T Consensus 35 ~EI~sL~~K~~~lE~eld~~~~~l~~~k~~l 65 (143)
T PF12718_consen 35 QEITSLQKKNQQLEEELDKLEEQLKEAKEKL 65 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555555555555555555555444433
No 296
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=23.58 E-value=3.1e+02 Score=23.45 Aligned_cols=9 Identities=44% Similarity=0.774 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q psy1953 159 LEAELQQIE 167 (379)
Q Consensus 159 LeaELqqlE 167 (379)
++++++.+.
T Consensus 85 l~~~~~~~~ 93 (118)
T PF13815_consen 85 LEERLQELQ 93 (118)
T ss_pred HHHHHHHHH
Confidence 333333333
No 297
>PRK14153 heat shock protein GrpE; Provisional
Probab=23.55 E-value=2.3e+02 Score=27.00 Aligned_cols=28 Identities=11% Similarity=0.264 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 147 RQVQSLTMHQKKLEAELQQIEEKFEAKK 174 (379)
Q Consensus 147 kQVqsL~~eQeKLeaELqqlEeefqeKK 174 (379)
.+++.+..+..++...+.++.++|..-+
T Consensus 40 ~ei~~l~~e~~elkd~~lR~~AEfeN~r 67 (194)
T PRK14153 40 SETEKCREEIESLKEQLFRLAAEFDNFR 67 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444333
No 298
>KOG1922|consensus
Probab=23.52 E-value=1.9e+02 Score=32.58 Aligned_cols=6 Identities=17% Similarity=0.357 Sum_probs=2.4
Q ss_pred HHHHHH
Q psy1953 53 YLAYMA 58 (379)
Q Consensus 53 y~ayi~ 58 (379)
+..|+.
T Consensus 124 ~~~~~~ 129 (833)
T KOG1922|consen 124 PLQWLL 129 (833)
T ss_pred chhhhH
Confidence 344433
No 299
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=23.46 E-value=43 Score=31.65 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=12.7
Q ss_pred HHHHhcC--cEEEEeccccC
Q psy1953 352 AKAMRLG--YWIILDELNLA 369 (379)
Q Consensus 352 ~~a~r~g--~w~~ldelnlA 369 (379)
.++++.| +-|||||||.|
T Consensus 108 ~~~l~~~~ydlvVLDEi~~A 127 (191)
T PRK05986 108 KRMLADESYDLVVLDELTYA 127 (191)
T ss_pred HHHHhCCCCCEEEEehhhHH
Confidence 3445555 66899999877
No 300
>PF04533 Herpes_U44: Herpes virus U44 protein; InterPro: IPR007619 This entry represents proteins from dsDNA beta-herpesvirinae and gamma-herpesvirinae viruses. The function is not known, and the proteins are named variously as U44, BSRF1, UL71, and M71. The entry also includes BSRF1.
Probab=23.44 E-value=3e+02 Score=26.73 Aligned_cols=50 Identities=20% Similarity=0.243 Sum_probs=32.5
Q ss_pred ccc--ccccccccchHHHHHHHhcCCCCCCccchhhhhHHHHHHHHHHHHHHH
Q psy1953 105 SVK--HVAYARYLRNHRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMH 155 (379)
Q Consensus 105 S~k--~laaarfdRNhrLmsELfsd~vVpd~rS~vt~dRiq~LkkQVqsL~~e 155 (379)
++| ||=+..+...+.+|..+.++.+-+..++.+ ..++..+++-.+-+-+-
T Consensus 63 ~l~q~~LLalQ~n~~~~~L~Rf~~~~cp~h~r~~v-e~ei~Klk~I~~vi~n~ 114 (210)
T PF04533_consen 63 VLKQAHLLALQCNNITDYLKRFLSAKCPPHCRPAV-ETEIQKLKRIQEVIWNT 114 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCChhhHHHH-HHHHHHHHHHHHHHHHH
Confidence 777 888888888899999988876555455433 33455555544444443
No 301
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=23.38 E-value=4e+02 Score=22.11 Aligned_cols=32 Identities=19% Similarity=0.550 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFE 171 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEeefq 171 (379)
.++..+...+..+..+.+.++.++..++.+..
T Consensus 70 ~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~ 101 (105)
T cd00632 70 ERLETIELRIKRLERQEEDLQEKLKELQEKIQ 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555555554443
No 302
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=23.36 E-value=2e+02 Score=22.89 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 149 VQSLTMHQKKLEAELQQIEEKFEAKK 174 (379)
Q Consensus 149 VqsL~~eQeKLeaELqqlEeefqeKK 174 (379)
|.+|..++.-|+.||.+++.+...|+
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~kK~ 52 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAKKK 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45677777777777777777766544
No 303
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=23.36 E-value=2.1e+02 Score=25.85 Aligned_cols=17 Identities=18% Similarity=0.384 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy1953 144 VLKRQVQSLTMHQKKLE 160 (379)
Q Consensus 144 ~LkkQVqsL~~eQeKLe 160 (379)
.++..+.++..+..++.
T Consensus 134 ~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 134 SLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 304
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=23.32 E-value=3.8e+02 Score=25.42 Aligned_cols=10 Identities=20% Similarity=0.331 Sum_probs=5.8
Q ss_pred ceEEeechHH
Q psy1953 342 GQLVFQEGVL 351 (379)
Q Consensus 342 g~~~~~eg~l 351 (379)
....|..|+.
T Consensus 253 ~~~~f~~~v~ 262 (302)
T PF10186_consen 253 DRQRFEYAVF 262 (302)
T ss_pred cHHHHHHHHH
Confidence 4556666654
No 305
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=23.22 E-value=3.2e+02 Score=26.86 Aligned_cols=31 Identities=16% Similarity=0.390 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEA 172 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqe 172 (379)
+..+...++.+...+..+...+.+++..+.+
T Consensus 112 l~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e 142 (239)
T COG1579 112 LAELMEEIEKLEKEIEDLKERLERLEKNLAE 142 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444433333
No 306
>PF03342 Rhabdo_M1: Rhabdovirus M1 matrix protein (M1 polymerase-associated protein); InterPro: IPR005010 This is a family of phosphoproteins of unknown function expressed by Rhadovirus.
Probab=23.10 E-value=2e+02 Score=27.73 Aligned_cols=57 Identities=19% Similarity=0.296 Sum_probs=39.9
Q ss_pred HHHHhcCCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1953 121 INEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVES 180 (379)
Q Consensus 121 msELfsd~vVpd~rS~vt~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~ 180 (379)
|.+|+-. -|++.+......++..|-+|+. ..||++|...|+++..++..+.+.+.++
T Consensus 58 lE~~il~-fV~Ed~q~dA~k~fgqlir~ik--~sHQeelT~HLEkv~~EnRAnl~al~eS 114 (219)
T PF03342_consen 58 LEQLILK-FVEEDSQQDALKAFGQLIRQIK--MSHQEELTQHLEKVATENRANLQALTES 114 (219)
T ss_pred HHHHHHH-hcchHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhhHHhHHHHHHH
Confidence 4444432 2343333444566888888765 4689999999999999999888777776
No 307
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=23.09 E-value=3.4e+02 Score=26.71 Aligned_cols=68 Identities=15% Similarity=0.213 Sum_probs=35.6
Q ss_pred CccCCCccccccccccccchHHHHHHHhcC---CCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 98 DEQEDGYSVKHVAYARYLRNHRLINEIFSD---SVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEK 169 (379)
Q Consensus 98 dD~dd~~S~k~laaarfdRNhrLmsELfsd---~vVpd~rS~vt~dRiq~LkkQVqsL~~eQeKLeaELqqlEee 169 (379)
.++++.+|+..+..=-=+++-|+|..|-.. +.|.-.-.+...-.+..|-|++ .|.+.|.++|-.-+-+
T Consensus 83 g~e~eDYSSss~~EEetTISAKvm~~ikavLgaTKiDLPVDINDPYDlGLLLRhL----RHHSNLLAnIgdP~Vr 153 (238)
T PF02084_consen 83 GGEDEDYSSSSVDEEETTISAKVMEDIKAVLGATKIDLPVDINDPYDLGLLLRHL----RHHSNLLANIGDPEVR 153 (238)
T ss_pred CCCccccccccccCCCccccHHHHHHHHHHhcccccccccccCChhhHHHHHHHH----HHHHHHHhhcCCHHHH
Confidence 333344666644333445677777777642 2222111111122267777754 5778888887754443
No 308
>KOG2129|consensus
Probab=23.05 E-value=2.1e+02 Score=30.70 Aligned_cols=21 Identities=14% Similarity=0.177 Sum_probs=14.6
Q ss_pred cccccccccchHHHHHHHhcC
Q psy1953 107 KHVAYARYLRNHRLINEIFSD 127 (379)
Q Consensus 107 k~laaarfdRNhrLmsELfsd 127 (379)
|..-++.|.+.+.|++.=+++
T Consensus 116 ketla~~Ye~eee~lTn~Lsr 136 (552)
T KOG2129|consen 116 KETLATVYEVEEEFLTNPLSR 136 (552)
T ss_pred ccccchhhhhhhhhccCchhH
Confidence 445567888988887765554
No 309
>PRK06798 fliD flagellar capping protein; Validated
Probab=22.97 E-value=3.1e+02 Score=28.98 Aligned_cols=32 Identities=13% Similarity=0.322 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFE 171 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEeefq 171 (379)
.|+..|..++..+..++++++..+++.++++.
T Consensus 379 ~r~~~l~~~i~~l~~~~~~~e~rl~~~e~~l~ 410 (440)
T PRK06798 379 ERSKSIDNRVSKLDLKITDIDTQNKQKQDNIV 410 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666655555554
No 310
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=22.94 E-value=3.3e+02 Score=24.74 Aligned_cols=33 Identities=27% Similarity=0.417 Sum_probs=16.1
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKR---QVQSLTMHQKKLEAELQQIEEKFEAKK 174 (379)
Q Consensus 142 iq~Lkk---QVqsL~~eQeKLeaELqqlEeefqeKK 174 (379)
|..|+. -+.+|..+.++|+.+.....++++.+.
T Consensus 43 i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l 78 (155)
T PF06810_consen 43 IKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKL 78 (155)
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 344455555555555555555554443
No 311
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=22.92 E-value=3e+02 Score=24.09 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy1953 160 EAELQQIEEKFEAKKRKFVE 179 (379)
Q Consensus 160 eaELqqlEeefqeKKrK~~E 179 (379)
-.++..++.+|.++.+++..
T Consensus 68 ~~~~~~L~~~~~~k~~~~~~ 87 (150)
T PF07200_consen 68 YEELKELESEYQEKEQQQDE 87 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444443333
No 312
>PRK09862 putative ATP-dependent protease; Provisional
Probab=22.87 E-value=55 Score=35.25 Aligned_cols=33 Identities=24% Similarity=0.056 Sum_probs=26.8
Q ss_pred EEeechHHHHHHhcCcEEEEeccccCChhhhhhhc
Q psy1953 344 LVFQEGVLAKAMRLGYWIILDELNLAPLPFLLYLL 378 (379)
Q Consensus 344 ~~~~eg~l~~a~r~g~w~~ldelnlA~~~vl~~l~ 378 (379)
..+..|.|..| .|-.+.|||||..+.++++.|+
T Consensus 283 ~~~~pG~l~~A--~gGvLfLDEi~e~~~~~~~~L~ 315 (506)
T PRK09862 283 AIPGPGEISLA--HNGVLFLDELPEFERRTLDALR 315 (506)
T ss_pred ceehhhHhhhc--cCCEEecCCchhCCHHHHHHHH
Confidence 45777876554 5679999999999999999876
No 313
>PF06273 eIF-4B: Plant specific eukaryotic initiation factor 4B; InterPro: IPR010433 This family consists of several plant specific eukaryotic initiation factor 4B proteins.
Probab=22.78 E-value=2.9e+02 Score=29.96 Aligned_cols=46 Identities=15% Similarity=0.068 Sum_probs=22.6
Q ss_pred HHHHHHHHHhHHHHHHHhcCCCCCchhhhhhhccCCcccCCCCCCCCCCC
Q psy1953 171 EAKKRKFVESSEQFQEELKKPGMGPEGYLNRLSASPVLTAPVSAQGPPPG 220 (379)
Q Consensus 171 qeKKrK~~E~sEkf~~ELKK~~vdeE~~~~~l~~r~v~~a~~~~~~~~~~ 220 (379)
.+...+.+.++++++.||-.++ .|..+...|+-+.|...+.-++-+
T Consensus 402 ~e~i~~kE~eLe~L~~elDdkv----RFg~~~~~rpgsgagr~~~~~~r~ 447 (492)
T PF06273_consen 402 REEISQKEKELEKLTRELDDKV----RFGQKAVQRPGSGAGRVAAFSPRP 447 (492)
T ss_pred HHHHHHHHHHHHHHHHHhhccc----ccccccccCCCccCCCcccCCCCC
Confidence 3334444445555556654421 233344556666666665544433
No 314
>PRK14011 prefoldin subunit alpha; Provisional
Probab=22.56 E-value=4.4e+02 Score=23.80 Aligned_cols=33 Identities=12% Similarity=0.341 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKK 174 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKK 174 (379)
++-+++++..+.....+|...|+++.....+-.
T Consensus 90 ~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~ 122 (144)
T PRK14011 90 IEDFKKSVEELDKTKKEGNKKIEELNKEITKLR 122 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777777777766666655444
No 315
>PRK14156 heat shock protein GrpE; Provisional
Probab=22.56 E-value=2.9e+02 Score=25.89 Aligned_cols=23 Identities=13% Similarity=0.276 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQ 164 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELq 164 (379)
+..+++++.++..+..++.++++
T Consensus 36 l~~l~~e~~elkd~~lR~~AEfe 58 (177)
T PRK14156 36 LELANERADEFENKYLRAHAEMQ 58 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555444444444444
No 316
>KOG4010|consensus
Probab=22.47 E-value=1.7e+02 Score=28.07 Aligned_cols=49 Identities=18% Similarity=0.205 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhHHHHHHHhcC
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKF-----VESSEQFQEELKK 190 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~-----~E~sEkf~~ELKK 190 (379)
-+.|+..+..++.++.-|..-|-..+....+.|||+ .|....+..-||.
T Consensus 46 keelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKLGlt~~~EL~qnisksw~d 99 (208)
T KOG4010|consen 46 KEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKLGLTVLKELKQNISKSWKD 99 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHhh
Confidence 334555555555555555444443333334444443 3333444444443
No 317
>KOG2129|consensus
Probab=22.47 E-value=4.1e+02 Score=28.67 Aligned_cols=14 Identities=36% Similarity=0.479 Sum_probs=10.0
Q ss_pred CCCCchhhhhhhcc
Q psy1953 191 PGMGPEGYLNRLSA 204 (379)
Q Consensus 191 ~~vdeE~~~~~l~~ 204 (379)
..+|+|.|-.++..
T Consensus 322 lemdeery~Ne~~~ 335 (552)
T KOG2129|consen 322 LEMDEERYLNEFVD 335 (552)
T ss_pred HHHHHHHHHhhhhc
Confidence 56778888777665
No 318
>PRK14155 heat shock protein GrpE; Provisional
Probab=22.28 E-value=4.5e+02 Score=25.20 Aligned_cols=31 Identities=19% Similarity=0.317 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKF 170 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEeef 170 (379)
.++..+++++.++..+..++.++++-...+.
T Consensus 20 ~~l~~le~e~~elkd~~lR~~AefeN~RKR~ 50 (208)
T PRK14155 20 QEIEALKAEVAALKDQALRYAAEAENTKRRA 50 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666666666666666666444443
No 319
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=22.21 E-value=47 Score=31.12 Aligned_cols=16 Identities=44% Similarity=0.675 Sum_probs=11.9
Q ss_pred HHhcC--cEEEEeccccC
Q psy1953 354 AMRLG--YWIILDELNLA 369 (379)
Q Consensus 354 a~r~g--~w~~ldelnlA 369 (379)
+++.| +-|||||||.|
T Consensus 110 ~l~~~~~dlvVLDEi~~A 127 (178)
T PRK07414 110 VVDEGRYSLVVLDELSLA 127 (178)
T ss_pred HHhCCCCCEEEEehhHHH
Confidence 44444 67999999976
No 320
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=22.20 E-value=3.8e+02 Score=28.01 Aligned_cols=52 Identities=21% Similarity=0.376 Sum_probs=29.5
Q ss_pred chHHHHHHHhcC-CCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 116 RNHRLINEIFSD-SVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEA 172 (379)
Q Consensus 116 RNhrLmsELfsd-~vVpd~rS~vt~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqe 172 (379)
-|.+|+++|++- .|+- + +..+++.|..-+..+.+++..|+..|+.+..+..|
T Consensus 107 qnqkL~nqL~~~~~vf~--k---~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~E 159 (401)
T PF06785_consen 107 QNQKLKNQLFHVREVFM--K---TKGDIQHLEGLIRHLREENQCLQLQLDALQQECGE 159 (401)
T ss_pred hHHHHHHHHHHHHHHHH--H---hcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhH
Confidence 577999999984 1221 1 12334444444455666666666666665555433
No 321
>PF04518 Effector_1: Effector from type III secretion system; InterPro: IPR007606 This family contains several uncharacterised chlamydial proteins.
Probab=22.18 E-value=2e+02 Score=30.25 Aligned_cols=80 Identities=18% Similarity=0.194 Sum_probs=44.4
Q ss_pred CcceecccCCCCccCCCccccccccccccchHHHHHHHhcCCCCCCccchhhhhHHHHHHHHHHHH--------HHHHHH
Q psy1953 87 RRIDIQPAEDEDEQEDGYSVKHVAYARYLRNHRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSL--------TMHQKK 158 (379)
Q Consensus 87 ~~~~iqpaeD~dD~dd~~S~k~laaarfdRNhrLmsELfsd~vVpd~rS~vt~dRiq~LkkQVqsL--------~~eQeK 158 (379)
..++|+..+|.|+.++.|.++-= + -+-...-+.|++.||....+.+...-+..+...++.- ..+|-.
T Consensus 273 ~~L~~~~~~~~~~~~~~F~i~g~----~-~~Wi~~L~~lE~~vv~G~~~~~~~GGl~~~~~~vqsdQQ~y~d~~QnqQL~ 347 (379)
T PF04518_consen 273 APLSIQGVSDPDEVDGAFKITGG----S-DDWIPTLQILESFVVSGFPNGTIPGGLFPLFTSVQSDQQNYTDMGQNQQLM 347 (379)
T ss_pred ccceeecCCCCCCcCCceEEEec----c-hhHHHHHHHHHHHHHcCCcCCCCCcchHHHHHHHHHhHHhHhhhhHHHHHH
Confidence 35788888888888877776631 1 2233344556666666554443333333333333322 123445
Q ss_pred HHHHHHHHHHHHH
Q psy1953 159 LEAELQQIEEKFE 171 (379)
Q Consensus 159 LeaELqqlEeefq 171 (379)
|+.++..+.+|+.
T Consensus 348 LQ~qmtamQQEWT 360 (379)
T PF04518_consen 348 LQMQMTAMQQEWT 360 (379)
T ss_pred HHHHHHHHHHHHH
Confidence 6666777777763
No 322
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=22.13 E-value=2.8e+02 Score=31.52 Aligned_cols=12 Identities=33% Similarity=0.379 Sum_probs=5.9
Q ss_pred echHHHHHHhcC
Q psy1953 347 QEGVLAKAMRLG 358 (379)
Q Consensus 347 ~eg~l~~a~r~g 358 (379)
.+..|-+|+..|
T Consensus 710 l~~~ld~a~~~g 721 (771)
T TIGR01069 710 LEKFLNDALLAG 721 (771)
T ss_pred HHHHHHHHHHCC
Confidence 344455555555
No 323
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=22.03 E-value=4.1e+02 Score=24.83 Aligned_cols=28 Identities=25% Similarity=0.508 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 144 VLKRQVQSLTMHQKKLEAELQQIEEKFE 171 (379)
Q Consensus 144 ~LkkQVqsL~~eQeKLeaELqqlEeefq 171 (379)
.+..++..|..+.+.|+.++..+..+..
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e 151 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCE 151 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444333
No 324
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=22.02 E-value=5e+02 Score=27.06 Aligned_cols=9 Identities=0% Similarity=-0.101 Sum_probs=4.1
Q ss_pred CCCCCcccc
Q psy1953 328 GSQHPHQNC 336 (379)
Q Consensus 328 ~~~~~~g~~ 336 (379)
+...+||..
T Consensus 162 d~~~lLgq~ 170 (407)
T PF04625_consen 162 DASSLLGQA 170 (407)
T ss_pred chhhhhhcc
Confidence 333455544
No 325
>PHA01750 hypothetical protein
Probab=22.02 E-value=2.2e+02 Score=23.04 Aligned_cols=28 Identities=32% Similarity=0.362 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhcC
Q psy1953 162 ELQQIEEKFEAKKRKFVESSEQFQEELKK 190 (379)
Q Consensus 162 ELqqlEeefqeKKrK~~E~sEkf~~ELKK 190 (379)
||.-+..+.++.+.+..+. ++-+.|+||
T Consensus 43 ELdNL~~ei~~~kikqDnl-~~qv~eik~ 70 (75)
T PHA01750 43 ELDNLKTEIEELKIKQDEL-SRQVEEIKR 70 (75)
T ss_pred HHHHHHHHHHHHHHhHHHH-HHHHHHHHH
Confidence 4444444444444333332 333444444
No 326
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=21.95 E-value=1.3e+02 Score=32.79 Aligned_cols=31 Identities=16% Similarity=0.327 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEA 172 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqe 172 (379)
++.|+++-..|.....++++-+..++.+-++
T Consensus 297 i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~ 327 (622)
T COG5185 297 IKTLREKWRALKSDSNKYENYVNAMKQKSQE 327 (622)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 5566655555555555555555555554443
No 327
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=21.85 E-value=3.7e+02 Score=26.99 Aligned_cols=6 Identities=33% Similarity=0.451 Sum_probs=2.1
Q ss_pred HHHHHH
Q psy1953 164 QQIEEK 169 (379)
Q Consensus 164 qqlEee 169 (379)
.+.+.+
T Consensus 217 ~~~Eke 222 (269)
T PF05278_consen 217 KQKEKE 222 (269)
T ss_pred HHHHHH
Confidence 333333
No 328
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=21.83 E-value=2.1e+02 Score=22.47 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 141 RMQVLKRQVQSLTMHQKKLEAEL 163 (379)
Q Consensus 141 Riq~LkkQVqsL~~eQeKLeaEL 163 (379)
.++.||.++.+|..+++.|+.|-
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN 37 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEEN 37 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 37777877777777666665543
No 329
>PF02370 M: M protein repeat; InterPro: IPR003345 This short repeat is found in multiple copies in bacterial M proteins. The M proteins bind to IgA and are closely associated with virulence. The M protein has been postulated to be a major group A streptococcal (GAS) virulence factor because of its contribution to the bacterial resistance to opsonophagocytosis [].; PDB: 2KK9_A.
Probab=21.77 E-value=2e+02 Score=18.27 Aligned_cols=16 Identities=38% Similarity=0.567 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1953 156 QKKLEAELQQIEEKFE 171 (379)
Q Consensus 156 QeKLeaELqqlEeefq 171 (379)
.++|+++++.++++++
T Consensus 3 kk~lEa~~qkLe~e~q 18 (21)
T PF02370_consen 3 KKQLEADHQKLEAEKQ 18 (21)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3456666666666654
No 330
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=21.71 E-value=4.8e+02 Score=25.37 Aligned_cols=48 Identities=27% Similarity=0.478 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELK 189 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~sEkf~~ELK 189 (379)
+..++.++++|..+...|......++....+...++....+.|...+.
T Consensus 218 ~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~ 265 (312)
T PF00038_consen 218 LKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIA 265 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhh
Confidence 555556666666666666666666666665555555555555555543
No 331
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=21.60 E-value=3.5e+02 Score=22.65 Aligned_cols=35 Identities=9% Similarity=0.180 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKK 174 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKK 174 (379)
..|..+..++..|..-...|+.....++.+.++..
T Consensus 26 ~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LL 60 (83)
T PF03670_consen 26 EEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELL 60 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34566666666666555555555555555544433
No 332
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=21.51 E-value=4.1e+02 Score=24.53 Aligned_cols=46 Identities=13% Similarity=0.366 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy1953 139 TNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQF 184 (379)
Q Consensus 139 ~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~sEkf 184 (379)
...+..+++.+.++..+....-.+++.++.+...-+.++.+-+-.|
T Consensus 26 R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f 71 (159)
T PF05384_consen 26 RQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNF 71 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4558888888888888888888888888888777777777766555
No 333
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=21.39 E-value=1.4e+02 Score=34.14 Aligned_cols=11 Identities=27% Similarity=0.510 Sum_probs=4.8
Q ss_pred cchHHHHHHHh
Q psy1953 115 LRNHRLINEIF 125 (379)
Q Consensus 115 dRNhrLmsELf 125 (379)
.|.=|.|+-=|
T Consensus 400 rRrLrilnqql 410 (861)
T PF15254_consen 400 RRRLRILNQQL 410 (861)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 334
>PRK09343 prefoldin subunit beta; Provisional
Probab=21.37 E-value=3.3e+02 Score=23.55 Aligned_cols=37 Identities=22% Similarity=0.344 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFV 178 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~ 178 (379)
...++++++-+..+.+.|+.+.+.++.++.+...++.
T Consensus 73 ~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~ 109 (121)
T PRK09343 73 EKELKERKELLELRSRTLEKQEKKLREKLKELQAKIN 109 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443333
No 335
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=21.35 E-value=2.4e+02 Score=23.78 Aligned_cols=33 Identities=21% Similarity=0.518 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEA 172 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqe 172 (379)
++++.+...+..+..+...|+.++..++.++++
T Consensus 74 ~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 74 EKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666777777777777777777666654
No 336
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.24 E-value=4.2e+02 Score=26.33 Aligned_cols=50 Identities=14% Similarity=0.288 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q psy1953 139 TNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEEL 188 (379)
Q Consensus 139 ~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~sEkf~~EL 188 (379)
...+..+++++.+|..+.+++++.+....++-.+....++++++++....
T Consensus 56 ~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~~a 105 (247)
T COG3879 56 VKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRMLA 105 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHh
No 337
>KOG1666|consensus
Probab=21.22 E-value=49 Score=32.11 Aligned_cols=35 Identities=14% Similarity=0.298 Sum_probs=0.0
Q ss_pred hhhhhhhhhccc----cCCCcccccchh----hHHHHHHHhhC
Q psy1953 15 QANCYGQSIGGC----SKIPQCNENNFS----EYEKNLKAYHN 49 (379)
Q Consensus 15 ~lweigKiig~m----~~l~d~ek~~~~----eY~~~~k~yhn 49 (379)
+|=|+.+.|++| |+|+-..|..|+ +|.+.||.+|.
T Consensus 44 ~leEa~ell~qMdlEvr~lp~~~Rs~~~~KlR~yksdl~~l~~ 86 (220)
T KOG1666|consen 44 KLEEANELLDQMDLEVRELPPNFRSSYLSKLREYKSDLKKLKR 86 (220)
T ss_pred hHHHHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHHHHHH
No 338
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=21.16 E-value=4.9e+02 Score=22.91 Aligned_cols=30 Identities=20% Similarity=0.473 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFE 171 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefq 171 (379)
+..+..++..+..+.+++...+.++.+++.
T Consensus 13 ~~~~~~~l~~l~~~~~~l~~~~~r~~ae~e 42 (165)
T PF01025_consen 13 IEELEEELEELEKEIEELKERLLRLQAEFE 42 (165)
T ss_dssp HCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444443
No 339
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=21.16 E-value=1.9e+02 Score=29.24 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 139 TNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFE 171 (379)
Q Consensus 139 ~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefq 171 (379)
..+|+.+..+|.....+|+.|..+|.....+|.
T Consensus 256 L~kf~p~~~~l~~~~~~Q~~ll~el~~~~~~f~ 288 (356)
T cd09237 256 LEKFKPLQNRLEATIFKQSSLINELKIELDKLF 288 (356)
T ss_pred HHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355899999999999999999999998888773
No 340
>PRK14149 heat shock protein GrpE; Provisional
Probab=21.06 E-value=3.2e+02 Score=25.92 Aligned_cols=29 Identities=3% Similarity=0.162 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 139 TNRMQVLKRQVQSLTMHQKKLEAELQQIE 167 (379)
Q Consensus 139 ~dRiq~LkkQVqsL~~eQeKLeaELqqlE 167 (379)
..++..|++++.++..+..++.++++-..
T Consensus 42 ~~~~~~l~~e~~elkd~~lR~~AefEN~r 70 (191)
T PRK14149 42 GEIKEDFELKYKEMHEKYLRVHADFENVK 70 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666655555555555544333
No 341
>KOG0250|consensus
Probab=21.04 E-value=3.8e+02 Score=31.85 Aligned_cols=49 Identities=24% Similarity=0.382 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHhcC
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESS---EQFQEELKK 190 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~s---Ekf~~ELKK 190 (379)
|..+...++++..+.+.++.+.+.+++.|.+.+.++..+. +.+.+|||.
T Consensus 750 Ie~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~~ 801 (1074)
T KOG0250|consen 750 IEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELKL 801 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4444444444444444445555555555555555555543 234444443
No 342
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=20.92 E-value=3.6e+02 Score=27.18 Aligned_cols=33 Identities=12% Similarity=0.193 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 139 TNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFE 171 (379)
Q Consensus 139 ~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefq 171 (379)
..+|+.+..+|.+...+|+.+..+|..++++|.
T Consensus 243 L~k~~~~~~~l~~~~~~Q~~ll~~i~~an~~f~ 275 (337)
T cd09234 243 LKKHDQLVNLIEQNLAAQENILKALTEANAKYA 275 (337)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456999999999999999999999999999996
No 343
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=20.83 E-value=4.5e+02 Score=29.08 Aligned_cols=63 Identities=17% Similarity=0.291 Sum_probs=37.5
Q ss_pred cccccccchHHHHHHHhcCCCCCCcc--ch-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 109 VAYARYLRNHRLINEIFSDSVVPDVR--SV-----VTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFE 171 (379)
Q Consensus 109 laaarfdRNhrLmsELfsd~vVpd~r--S~-----vt~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefq 171 (379)
.+..+|.+..+.....-....+.... +. .....++.|+++++++....++++.+++.+..+..
T Consensus 290 ~k~s~f~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~ 359 (594)
T PF05667_consen 290 DKGSRFTHSEKPQEAAPAAAVVPPKEKETEEDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLK 359 (594)
T ss_pred ccccccccccchhhhhhccccCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888877333333222222111 11 11244888888888888888888777776665554
No 344
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=20.72 E-value=4.1e+02 Score=22.50 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEK 169 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEee 169 (379)
+...+.+.-.+...+.++-.++..+.++
T Consensus 19 L~~v~~~~l~l~~~n~el~~el~~l~~~ 46 (106)
T PF05837_consen 19 LSDVEKKRLRLKRRNQELAQELLELAEK 46 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444433
No 345
>KOG4571|consensus
Probab=20.64 E-value=2.7e+02 Score=28.25 Aligned_cols=32 Identities=31% Similarity=0.276 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Q psy1953 157 KKLEAELQQIEEKFEAKKRKFVESSEQFQEELK 189 (379)
Q Consensus 157 eKLeaELqqlEeefqeKKrK~~E~sEkf~~ELK 189 (379)
+.|..+++.++.+..+.|.+..+. |+++..||
T Consensus 251 E~l~ge~~~Le~rN~~LK~qa~~l-erEI~ylK 282 (294)
T KOG4571|consen 251 EALLGELEGLEKRNEELKDQASEL-EREIRYLK 282 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 334444444444444333322222 44444444
No 346
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=20.61 E-value=5.4e+02 Score=21.95 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 149 VQSLTMHQKKLEAELQQIEEKFEAKKRKFV 178 (379)
Q Consensus 149 VqsL~~eQeKLeaELqqlEeefqeKKrK~~ 178 (379)
+.++..+.++|+++|..++.+-.++-.++.
T Consensus 4 ~s~I~~eIekLqe~lk~~e~keaERigr~A 33 (92)
T PF07820_consen 4 SSKIREEIEKLQEQLKQAETKEAERIGRIA 33 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777666665554
No 347
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=20.53 E-value=1.6e+02 Score=25.83 Aligned_cols=39 Identities=33% Similarity=0.448 Sum_probs=19.1
Q ss_pred HHHHHHhcCCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 119 RLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAEL 163 (379)
Q Consensus 119 rLmsELfsd~vVpd~rS~vt~dRiq~LkkQVqsL~~eQeKLeaEL 163 (379)
+=|.+++++.- +++++.+..++..|+.|..+..+|++++
T Consensus 68 r~i~~ml~~~~------~~r~~~~~~l~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 68 RKIEEMLSDLE------VARQSEMDELTERVDALERQVADLENKL 106 (108)
T ss_pred HHHHHHHhhcc------ccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556665532 2233445555555555555555555544
No 348
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=20.52 E-value=3.8e+02 Score=25.19 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQ 164 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELq 164 (379)
+++..|..++.++..+..++.++++
T Consensus 43 ~~i~~Le~q~~e~~~~~lr~~Ae~e 67 (193)
T COG0576 43 QEIAELEAQLEELKDKYLRAQAEFE 67 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555554444444444444
No 349
>PF05518 Totivirus_coat: Totivirus coat protein; InterPro: IPR008871 This family of proteins contain the coat proteins of the Totiviruses.
Probab=20.50 E-value=9.5e+02 Score=27.64 Aligned_cols=20 Identities=15% Similarity=0.303 Sum_probs=10.2
Q ss_pred hHHHHHHHhhCCHHHHHHHH
Q psy1953 39 EYEKNLKAYHNSPQYLAYMA 58 (379)
Q Consensus 39 eY~~~~k~yhnSpay~ayi~ 58 (379)
.|+=.|+.-+.++-+..|.+
T Consensus 464 ~y~~~~~saR~~~f~~~~~~ 483 (759)
T PF05518_consen 464 TYRVKMRSARTSPFVCHWNN 483 (759)
T ss_pred EEEEeccCccccHHHHHHhc
Confidence 45555555555554444443
No 350
>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain. This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.
Probab=20.48 E-value=3.5e+02 Score=24.69 Aligned_cols=29 Identities=21% Similarity=0.436 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1953 152 LTMHQKKLEAELQQIEEKFEAKKRKFVES 180 (379)
Q Consensus 152 L~~eQeKLeaELqqlEeefqeKKrK~~E~ 180 (379)
...+.+++.-+++++++++++.+.+..++
T Consensus 27 ~~~km~~i~P~~~~i~~k~k~~~~~~~~e 55 (181)
T TIGR03592 27 SMRKMQELQPKLKEIQEKYKDDPQKLQQE 55 (181)
T ss_pred HHHHHHHhhHHHHHHHHHHHhhHHHHHHH
Confidence 33445566777777777776544444333
No 351
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=20.48 E-value=3.4e+02 Score=23.05 Aligned_cols=31 Identities=23% Similarity=0.557 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEA 172 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqe 172 (379)
+..+++++..+....++++.++..+.++...
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~ 119 (129)
T cd00584 89 IEFLDKKIEELTKQIEKLQKELAKLKDQINT 119 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666655543
No 352
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=20.45 E-value=2.7e+02 Score=23.84 Aligned_cols=28 Identities=21% Similarity=0.485 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 145 LKRQVQSLTMHQKKLEAELQQIEEKFEA 172 (379)
Q Consensus 145 LkkQVqsL~~eQeKLeaELqqlEeefqe 172 (379)
|..++..++.+.+.+..++++++.+.++
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~ 105 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKK 105 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555444443
No 353
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=20.45 E-value=2.1e+02 Score=31.44 Aligned_cols=6 Identities=17% Similarity=0.401 Sum_probs=2.5
Q ss_pred HHHhhC
Q psy1953 44 LKAYHN 49 (379)
Q Consensus 44 ~k~yhn 49 (379)
++.||.
T Consensus 50 ~rdY~T 55 (546)
T PF07888_consen 50 TRDYYT 55 (546)
T ss_pred hhheee
Confidence 344443
No 354
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=20.45 E-value=4.2e+02 Score=20.68 Aligned_cols=18 Identities=11% Similarity=0.274 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy1953 146 KRQVQSLTMHQKKLEAEL 163 (379)
Q Consensus 146 kkQVqsL~~eQeKLeaEL 163 (379)
++++.+.+.++.+++..+
T Consensus 5 ~e~l~~ie~~l~~~~~~i 22 (71)
T PF10779_consen 5 KEKLNRIETKLDNHEERI 22 (71)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444443333
No 355
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=20.35 E-value=2.1e+02 Score=27.60 Aligned_cols=47 Identities=26% Similarity=0.444 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEEL 188 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~sEkf~~EL 188 (379)
|+..+.++..|..+..+-+.+|.++++++..-+..|+..=+.+.+||
T Consensus 120 YD~~r~~~~kL~~k~~kDe~KL~kAe~el~~Ak~~ye~lN~~Lk~EL 166 (211)
T cd07611 120 YDSARHHLEALQTSKRKDEGRIAKAEEEFQKAQKVFEEFNVDLQEEL 166 (211)
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777665555566777788777766655555544444444
No 356
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=20.24 E-value=4e+02 Score=25.93 Aligned_cols=38 Identities=13% Similarity=0.260 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKF 177 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~ 177 (379)
..+..+++....|..+.....++|..+++....-..-|
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iI 69 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENII 69 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44888888899999999999999988888877655333
No 357
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=20.12 E-value=4.5e+02 Score=24.91 Aligned_cols=16 Identities=13% Similarity=0.314 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1953 144 VLKRQVQSLTMHQKKL 159 (379)
Q Consensus 144 ~LkkQVqsL~~eQeKL 159 (379)
.+++++.+...+..++
T Consensus 81 ~~~~~i~~~r~~l~~~ 96 (302)
T PF10186_consen 81 RLRKRIEQKRERLEEL 96 (302)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 358
>PRK14141 heat shock protein GrpE; Provisional
Probab=20.09 E-value=5.2e+02 Score=24.88 Aligned_cols=39 Identities=8% Similarity=0.209 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1953 143 QVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESS 181 (379)
Q Consensus 143 q~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~s 181 (379)
..+..+++.++.+..++...+.++.++|..-+++..++.
T Consensus 34 ~~~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~ 72 (209)
T PRK14141 34 DPEPDPLEALKAENAELKDRMLRLAAEMENLRKRTQRDV 72 (209)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446667777777777777777777777776665555553
No 359
>PRK14164 heat shock protein GrpE; Provisional
Probab=20.08 E-value=3e+02 Score=26.69 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQ 164 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELq 164 (379)
.++..|+.++.++..+..++.++.+
T Consensus 77 ~~~~~le~el~el~d~llR~~AE~e 101 (218)
T PRK14164 77 GEASTVEAQLAERTEDLQRVTAEYA 101 (218)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555544444444444
No 360
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=20.00 E-value=5.4e+02 Score=24.22 Aligned_cols=34 Identities=12% Similarity=0.319 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1953 147 RQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVES 180 (379)
Q Consensus 147 kQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~ 180 (379)
.+++.|..+.+.+...+.++.+++...+++.++.
T Consensus 43 ~~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~re 76 (193)
T COG0576 43 QEIAELEAQLEELKDKYLRAQAEFENLRKRTERE 76 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455554445555555555554444333333
Done!