Query psy1953
Match_columns 379
No_of_seqs 323 out of 438
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 20:31:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1953.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1953hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2crj_A SWI/SNF-related matrix- 98.1 3.8E-07 1.3E-11 73.4 0.1 50 8-57 27-85 (92)
2 2cs1_A PMS1 protein homolog 1; 97.4 2E-05 6.7E-10 63.3 0.1 42 9-50 28-78 (92)
3 1aab_A High mobility group pro 97.4 2.2E-05 7.4E-10 61.6 0.2 43 8-50 27-80 (83)
4 2lhj_A High mobility group pro 97.4 2.9E-05 1E-09 62.9 0.3 41 9-49 43-94 (97)
5 1v63_A Nucleolar transcription 97.4 3E-05 1E-09 63.7 0.2 40 10-49 28-76 (101)
6 1ckt_A High mobility group 1 p 97.3 2.5E-05 8.5E-10 59.3 -0.4 40 8-47 21-71 (71)
7 1k99_A Upstream binding factor 97.3 3.7E-05 1.3E-09 62.8 0.5 42 8-49 30-80 (99)
8 1gt0_D Transcription factor SO 97.3 2.5E-05 8.5E-10 60.8 -0.8 44 8-51 22-74 (80)
9 2lef_A LEF-1 HMG, protein (lym 97.3 2.7E-05 9.2E-10 61.6 -1.1 45 9-53 23-76 (86)
10 2co9_A Thymus high mobility gr 97.3 2.7E-05 9.1E-10 63.9 -1.2 41 9-49 38-87 (102)
11 1hme_A High mobility group pro 97.2 5.3E-05 1.8E-09 58.4 0.5 41 9-49 27-76 (77)
12 1cg7_A Protein (NON histone pr 97.2 3.5E-05 1.2E-09 62.1 -0.8 42 8-49 40-90 (93)
13 1j46_A SRY, sex-determining re 97.2 3E-05 1E-09 61.3 -1.9 43 9-51 25-76 (85)
14 2eqz_A High mobility group pro 97.1 6.3E-05 2.2E-09 59.5 -0.4 40 9-48 36-86 (86)
15 1wxl_A Single-strand recogniti 97.1 4.8E-05 1.6E-09 58.4 -1.3 40 9-50 24-72 (73)
16 1wz6_A HMG-box transcription f 97.0 1.7E-05 6E-10 62.1 -4.6 31 8-38 27-58 (82)
17 3nm9_A HMG-D, high mobility gr 96.9 0.00012 4E-09 56.1 -0.1 40 8-49 23-71 (73)
18 3f27_D Transcription factor SO 96.9 4.8E-05 1.6E-09 59.4 -2.9 44 8-51 26-78 (83)
19 1hry_A Human SRY; DNA, DNA-bin 96.8 7.7E-05 2.6E-09 57.3 -2.1 31 8-38 24-55 (76)
20 3u2b_C Transcription factor SO 96.8 8.1E-05 2.8E-09 57.5 -2.2 43 8-50 22-73 (79)
21 4a3n_A Transcription factor SO 96.7 7.9E-05 2.7E-09 56.3 -2.7 42 7-48 21-64 (71)
22 4euw_A Transcription factor SO 96.7 0.00016 5.6E-09 59.7 -1.4 45 8-52 49-102 (106)
23 1i11_A Transcription factor SO 96.6 0.00088 3E-08 52.1 2.3 31 8-38 24-55 (81)
24 3fgh_A Transcription factor A, 96.4 0.00061 2.1E-08 51.2 0.4 30 18-47 28-66 (67)
25 1l8y_A Upstream binding factor 96.2 0.00086 2.9E-08 54.8 0.0 40 10-50 26-74 (91)
26 1wgf_A Upstream binding factor 96.1 0.00044 1.5E-08 55.2 -2.1 40 8-47 40-81 (90)
27 1v64_A Nucleolar transcription 96.0 0.0012 4.2E-08 54.7 0.1 37 13-49 38-83 (108)
28 2yrq_A High mobility group pro 95.7 0.002 6.7E-08 56.9 0.1 42 9-50 36-88 (173)
29 2e6o_A HMG box-containing prot 95.5 0.0016 5.4E-08 51.6 -0.9 31 8-38 37-68 (87)
30 3tq6_A Transcription factor A, 94.9 0.0048 1.7E-07 56.7 0.3 42 8-49 29-79 (214)
31 3tmm_A Transcription factor A, 94.8 0.0054 1.8E-07 57.3 0.3 42 8-49 61-111 (238)
32 2gzk_A Sex-determining region 94.8 0.0031 1E-07 54.7 -1.4 42 9-50 25-75 (159)
33 2yrq_A High mobility group pro 94.6 0.0061 2.1E-07 53.7 -0.1 31 8-38 121-152 (173)
34 2gzk_A Sex-determining region 94.5 0.0047 1.6E-07 53.6 -0.8 31 8-38 108-139 (159)
35 2v8f_C MDIA1, profilin IIA; al 94.2 0.027 9.3E-07 35.7 2.4 19 241-259 4-22 (26)
36 2d7l_A WD repeat and HMG-box D 94.1 0.0056 1.9E-07 48.4 -1.2 31 8-38 25-57 (81)
37 3tmm_A Transcription factor A, 94.0 0.015 5.2E-07 54.2 1.3 36 9-48 167-211 (238)
38 3tq6_A Transcription factor A, 93.8 0.013 4.5E-07 53.8 0.4 36 9-48 135-179 (214)
39 4akg_A Glutathione S-transfera 89.1 0.12 4.2E-06 62.8 1.8 48 325-377 963-1022(2695)
40 1kd8_B GABH BLL, GCN4 acid bas 87.8 1.3 4.3E-05 30.3 5.4 34 141-174 2-35 (36)
41 4akg_A Glutathione S-transfera 85.0 0.44 1.5E-05 58.1 3.3 30 348-377 688-717 (2695)
42 2cto_A Novel protein; high mob 81.9 0.18 6.2E-06 40.9 -1.1 26 13-38 33-62 (93)
43 3c3g_A Alpha/beta peptide with 80.8 2.6 8.7E-05 28.3 4.4 29 141-169 1-29 (33)
44 3m48_A General control protein 79.7 2.1 7.2E-05 28.8 3.7 28 141-168 1-28 (33)
45 3c3f_A Alpha/beta peptide with 78.8 3.2 0.00011 28.0 4.4 29 141-169 2-30 (34)
46 3swk_A Vimentin; cytoskeleton, 78.7 6.5 0.00022 31.3 7.1 49 142-190 2-56 (86)
47 2oxj_A Hybrid alpha/beta pepti 78.5 3.3 0.00011 28.0 4.4 29 141-169 2-30 (34)
48 3iot_A Maltose-binding protein 78.2 2.5 8.4E-05 41.2 5.4 14 177-190 357-370 (449)
49 1kd8_A GABH AIV, GCN4 acid bas 77.5 4.1 0.00014 27.8 4.6 32 141-172 2-33 (36)
50 2r44_A Uncharacterized protein 76.9 1.5 5.1E-05 40.9 3.3 42 332-378 88-130 (331)
51 1uo4_A General control protein 76.8 3.1 0.00011 28.1 3.9 28 141-168 2-29 (34)
52 2wq1_A General control protein 76.4 4.2 0.00014 27.3 4.4 28 141-168 1-28 (33)
53 2bni_A General control protein 76.3 3.3 0.00011 28.0 3.9 29 141-169 2-30 (34)
54 3ol1_A Vimentin; structural ge 73.6 11 0.00038 31.5 7.5 53 138-190 18-76 (119)
55 3f8t_A Predicted ATPase involv 73.3 2.3 7.9E-05 44.1 3.8 35 341-378 287-321 (506)
56 1g8p_A Magnesium-chelatase 38 72.3 1.5 5.3E-05 40.6 2.1 35 342-378 131-165 (350)
57 2ve7_C Kinetochore protein NUF 70.2 0.7 2.4E-05 43.6 -0.8 26 104-129 109-134 (250)
58 2hy6_A General control protein 69.7 5.6 0.00019 26.9 3.8 29 141-169 2-30 (34)
59 1ci6_A Transcription factor AT 68.4 17 0.00058 27.1 6.8 36 140-175 23-58 (63)
60 3vp9_A General transcriptional 67.3 12 0.00043 30.4 6.2 48 143-190 39-86 (92)
61 3m91_A Proteasome-associated A 66.7 22 0.00077 25.9 6.8 39 139-177 8-46 (51)
62 2wt7_A Proto-oncogene protein 64.0 24 0.00083 26.1 6.9 35 140-174 23-57 (63)
63 2yuk_A Myeloid/lymphoid or mix 63.4 0.99 3.4E-05 36.5 -1.1 36 8-47 42-81 (90)
64 2r2v_A GCN4 leucine zipper; co 63.3 12 0.00041 25.3 4.4 28 141-168 2-29 (34)
65 2xs1_A Programmed cell death 6 61.0 11 0.00039 39.9 6.3 66 108-173 578-645 (704)
66 3f9v_A Minichromosome maintena 60.0 3.6 0.00012 42.8 2.2 36 341-378 377-412 (595)
67 2dgc_A Protein (GCN4); basic d 59.8 12 0.00041 28.1 4.5 33 139-171 29-61 (63)
68 3s4r_A Vimentin; alpha-helix, 59.2 29 0.001 27.8 7.0 49 139-190 15-63 (93)
69 1t2k_D Cyclic-AMP-dependent tr 59.2 28 0.00096 25.5 6.4 36 140-175 22-57 (61)
70 3tnu_B Keratin, type II cytosk 56.5 46 0.0016 27.7 8.1 38 142-179 45-82 (129)
71 2bjv_A PSP operon transcriptio 56.5 4.9 0.00017 36.1 2.2 32 345-378 90-121 (265)
72 1deb_A APC protein, adenomatou 56.5 50 0.0017 24.2 7.1 28 140-167 3-30 (54)
73 2e9x_A DNA replication complex 56.4 1.9 6.5E-05 37.3 -0.6 34 16-49 91-126 (149)
74 3swf_A CGMP-gated cation chann 55.3 46 0.0016 26.1 7.2 43 146-188 6-48 (74)
75 3nbx_X ATPase RAVA; AAA+ ATPas 54.6 4.3 0.00015 41.6 1.6 34 341-378 96-130 (500)
76 1jnm_A Proto-oncogene C-JUN; B 54.4 14 0.00049 27.2 4.1 35 140-174 22-56 (62)
77 4etp_A Kinesin-like protein KA 53.4 25 0.00086 35.0 6.9 50 140-190 10-59 (403)
78 3swy_A Cyclic nucleotide-gated 53.4 52 0.0018 23.5 6.7 36 146-181 4-39 (46)
79 4fcw_A Chaperone protein CLPB; 53.0 8.1 0.00028 35.1 3.1 30 349-378 109-140 (311)
80 3cve_A Homer protein homolog 1 52.5 80 0.0027 24.5 8.3 14 156-169 37-50 (72)
81 1qvr_A CLPB protein; coiled co 51.5 6.3 0.00022 42.4 2.4 37 342-378 642-681 (854)
82 1nkp_A C-MYC, MYC proto-oncoge 51.5 46 0.0016 26.3 6.9 54 121-174 21-79 (88)
83 3cvf_A Homer-3, homer protein 50.9 84 0.0029 24.8 8.2 30 142-171 29-58 (79)
84 3vkg_A Dynein heavy chain, cyt 50.2 8 0.00028 48.2 3.2 28 350-377 649-676 (3245)
85 3tnu_A Keratin, type I cytoske 48.5 47 0.0016 27.8 6.9 39 142-180 47-85 (131)
86 3tnu_A Keratin, type I cytoske 48.5 74 0.0025 26.6 8.1 9 57-65 3-11 (131)
87 3tnu_B Keratin, type II cytosk 48.4 73 0.0025 26.5 8.1 8 58-65 2-9 (129)
88 3oja_B Anopheles plasmodium-re 48.3 19 0.00066 36.3 5.3 38 143-180 526-563 (597)
89 1nlw_A MAD protein, MAX dimeri 48.1 48 0.0016 25.8 6.4 20 151-170 51-70 (80)
90 2w83_C C-JUN-amino-terminal ki 47.8 34 0.0012 27.0 5.4 30 143-172 33-62 (77)
91 3hnw_A Uncharacterized protein 47.7 56 0.0019 28.0 7.4 30 142-171 70-99 (138)
92 4dci_A Uncharacterized protein 47.4 1E+02 0.0035 26.9 9.1 79 102-190 8-102 (150)
93 1dh3_A Transcription factor CR 46.5 11 0.00038 27.6 2.3 32 140-171 22-53 (55)
94 3hnw_A Uncharacterized protein 46.3 69 0.0024 27.4 7.7 41 140-180 75-115 (138)
95 1ik9_A DNA repair protein XRCC 45.4 70 0.0024 29.3 8.1 20 171-190 185-204 (213)
96 3a7p_A Autophagy protein 16; c 44.7 84 0.0029 27.7 8.1 32 143-174 64-95 (152)
97 1s1c_X RHO-associated, coiled- 44.5 77 0.0026 24.6 6.9 28 145-172 4-31 (71)
98 3vem_A Helicase protein MOM1; 44.4 38 0.0013 28.6 5.6 13 160-172 67-79 (115)
99 1uix_A RHO-associated kinase; 43.8 75 0.0026 24.7 6.7 27 146-172 3-29 (71)
100 1r6b_X CLPA protein; AAA+, N-t 43.3 12 0.00042 39.2 3.0 30 349-378 547-578 (758)
101 2yy0_A C-MYC-binding protein; 42.2 44 0.0015 24.3 4.9 22 142-163 21-42 (53)
102 3k1j_A LON protease, ATP-depen 41.5 13 0.00045 38.3 2.8 31 346-378 192-222 (604)
103 4h22_A Leucine-rich repeat fli 41.2 48 0.0016 27.5 5.6 62 118-180 9-70 (103)
104 4etp_A Kinesin-like protein KA 41.2 70 0.0024 31.8 7.9 48 140-188 3-50 (403)
105 2jee_A YIIU; FTSZ, septum, coi 40.7 1.2E+02 0.0042 24.0 7.7 26 140-165 20-45 (81)
106 3m9b_A Proteasome-associated A 40.6 36 0.0012 32.3 5.4 34 139-172 53-86 (251)
107 3s4r_A Vimentin; alpha-helix, 40.3 57 0.0019 26.1 5.9 36 139-174 55-90 (93)
108 4ani_A Protein GRPE; chaperone 39.5 83 0.0028 29.0 7.6 40 141-180 60-99 (213)
109 3dzd_A Transcriptional regulat 38.8 10 0.00035 36.7 1.4 56 321-378 188-243 (368)
110 1hjb_A Ccaat/enhancer binding 38.8 90 0.0031 24.9 6.8 38 140-177 36-73 (87)
111 1go4_E MAD1 (mitotic arrest de 38.5 54 0.0019 27.0 5.5 34 138-171 10-43 (100)
112 1ojl_A Transcriptional regulat 38.2 21 0.00071 33.4 3.4 33 344-378 85-117 (304)
113 3qh9_A Liprin-beta-2; coiled-c 38.0 39 0.0013 26.9 4.4 35 139-173 25-59 (81)
114 3mq7_A Bone marrow stromal ant 37.9 79 0.0027 26.8 6.5 21 149-169 73-93 (121)
115 3qh9_A Liprin-beta-2; coiled-c 37.7 1.3E+02 0.0044 23.9 7.3 30 145-174 24-53 (81)
116 2fic_A Bridging integrator 1; 37.4 40 0.0014 30.4 5.1 47 142-188 160-206 (251)
117 2v71_A Nuclear distribution pr 37.3 1.2E+02 0.0041 27.5 8.1 14 156-169 90-103 (189)
118 3u1c_A Tropomyosin alpha-1 cha 36.3 1.5E+02 0.0051 23.8 7.9 21 151-171 48-68 (101)
119 3sjb_C Golgi to ER traffic pro 36.2 52 0.0018 26.8 5.0 35 140-174 49-83 (93)
120 1x79_B RAB GTPase binding effe 35.9 1.4E+02 0.0047 25.0 7.7 9 182-190 58-66 (112)
121 3mq7_A Bone marrow stromal ant 35.8 1.1E+02 0.0038 25.9 7.1 29 142-170 73-101 (121)
122 3pxi_A Negative regulator of g 35.8 16 0.00056 38.4 2.5 31 348-378 568-600 (758)
123 2q9q_C DNA replication complex 34.4 7.7 0.00026 34.9 -0.2 35 16-50 91-127 (196)
124 2eqb_B RAB guanine nucleotide 34.0 1.7E+02 0.0057 23.9 7.7 27 142-168 7-33 (97)
125 3na7_A HP0958; flagellar bioge 34.0 51 0.0018 30.4 5.3 38 143-180 114-151 (256)
126 1f32_A Major pepsin inhibitor 33.0 10 0.00034 33.3 0.3 27 22-48 87-115 (149)
127 1hqc_A RUVB; extended AAA-ATPa 32.7 16 0.00056 33.2 1.7 24 355-378 88-111 (324)
128 3a7p_A Autophagy protein 16; c 32.6 1.5E+02 0.005 26.2 7.6 19 142-160 70-88 (152)
129 3ol1_A Vimentin; structural ge 32.2 1E+02 0.0035 25.5 6.4 42 140-181 69-110 (119)
130 2nrj_A HBL B protein; enteroto 32.2 1.4E+02 0.0048 29.0 8.3 64 140-203 123-186 (346)
131 2zqm_A Prefoldin beta subunit 32.0 1.2E+02 0.0042 23.9 6.7 36 142-177 72-107 (117)
132 3a2a_A Voltage-gated hydrogen 31.6 1.3E+02 0.0044 22.4 6.0 29 150-178 14-42 (58)
133 2ve7_A Kinetochore protein HEC 31.5 61 0.0021 31.1 5.5 23 148-170 186-208 (315)
134 2wt7_B Transcription factor MA 31.3 1.2E+02 0.0041 24.4 6.4 36 142-177 50-85 (90)
135 3n70_A Transport activator; si 31.2 28 0.00095 28.4 2.7 29 348-378 69-97 (145)
136 3u1c_A Tropomyosin alpha-1 cha 31.2 1.5E+02 0.0052 23.7 7.1 30 140-169 23-52 (101)
137 3mud_A DNA repair protein XRCC 31.1 1.2E+02 0.0042 27.2 7.1 39 142-180 130-168 (175)
138 2oqq_A Transcription factor HY 30.6 1.4E+02 0.0048 21.0 6.3 31 142-172 5-35 (42)
139 1gu4_A CAAT/enhancer binding p 30.2 93 0.0032 24.3 5.4 35 140-174 36-70 (78)
140 3u59_A Tropomyosin beta chain; 30.1 1.6E+02 0.0056 23.4 7.1 30 140-169 23-52 (101)
141 2v66_B Nuclear distribution pr 29.3 1.7E+02 0.0058 24.4 7.2 48 142-190 19-70 (111)
142 1gk6_A Vimentin; intermediate 29.2 1.2E+02 0.004 22.2 5.6 45 144-189 4-48 (59)
143 1nkp_B MAX protein, MYC proto- 29.0 92 0.0032 23.8 5.2 26 142-167 49-74 (83)
144 1deq_A Fibrinogen (alpha chain 28.7 1.5E+02 0.005 29.9 7.7 6 142-147 122-127 (390)
145 2yy0_A C-MYC-binding protein; 28.7 99 0.0034 22.4 5.0 22 142-163 28-49 (53)
146 3co5_A Putative two-component 28.7 34 0.0012 27.8 2.9 22 357-378 75-96 (143)
147 1ez3_A Syntaxin-1A; three heli 28.6 1.8E+02 0.0062 23.2 7.3 7 120-126 6-12 (127)
148 4dzo_A Mitotic spindle assembl 28.3 97 0.0033 26.0 5.6 33 148-180 5-37 (123)
149 4emc_A Monopolin complex subun 28.2 60 0.0021 29.6 4.5 47 110-156 11-57 (190)
150 3rrk_A V-type ATPase 116 kDa s 28.1 2.1E+02 0.0071 27.0 8.6 43 138-180 224-266 (357)
151 3u06_A Protein claret segregat 27.8 1.4E+02 0.0047 29.8 7.5 50 140-190 10-59 (412)
152 3lo3_A Uncharacterized conserv 26.9 26 0.00089 27.7 1.7 17 42-58 64-80 (94)
153 2l5g_B Putative uncharacterize 26.9 1.7E+02 0.0057 20.6 5.9 28 152-179 7-34 (42)
154 2ocy_A RAB guanine nucleotide 26.9 70 0.0024 28.2 4.6 72 117-188 5-95 (154)
155 3na7_A HP0958; flagellar bioge 26.6 2.1E+02 0.0072 26.2 8.1 32 143-174 107-138 (256)
156 3mtu_A Tropomyosin alpha-1 cha 26.6 2.2E+02 0.0074 21.8 7.1 29 142-170 4-32 (75)
157 3efg_A Protein SLYX homolog; x 26.4 1.6E+02 0.0055 22.8 6.2 24 147-170 14-37 (78)
158 1nkp_B MAX protein, MYC proto- 26.3 2E+02 0.0068 21.9 6.7 50 121-171 17-71 (83)
159 3iox_A AGI/II, PA; alpha helix 26.1 64 0.0022 33.4 4.8 14 167-180 82-95 (497)
160 2h8h_A Proto-oncogene tyrosine 25.9 8.3 0.00029 38.7 -1.7 29 336-364 94-125 (535)
161 2zqm_A Prefoldin beta subunit 25.6 2.5E+02 0.0084 22.1 7.5 33 140-172 77-109 (117)
162 1gk4_A Vimentin; intermediate 25.4 2.2E+02 0.0075 22.0 6.8 41 148-188 2-42 (84)
163 3t97_C Nuclear pore glycoprote 25.3 71 0.0024 24.2 3.8 33 139-171 11-43 (64)
164 3mq9_A Bone marrow stromal ant 25.1 1.2E+02 0.0042 29.6 6.6 13 46-58 296-308 (471)
165 3pfi_A Holliday junction ATP-d 25.0 32 0.0011 31.6 2.3 24 355-378 104-127 (338)
166 2qyc_A Ferredoxin-like protein 24.9 38 0.0013 26.6 2.3 18 39-56 64-81 (103)
167 2jee_A YIIU; FTSZ, septum, coi 24.7 2.6E+02 0.0089 22.1 7.8 17 142-158 29-45 (81)
168 1tr0_A Stable protein 1; plant 24.6 33 0.0011 27.2 1.9 19 39-57 72-90 (108)
169 3iv1_A Tumor susceptibility ge 24.5 2.6E+02 0.0088 22.0 7.6 45 143-187 10-54 (78)
170 1fxk_A Prefoldin; archaeal pro 24.4 1.6E+02 0.0053 23.0 6.0 35 142-176 67-101 (107)
171 1x79_B RAB GTPase binding effe 24.3 2.1E+02 0.0071 23.9 6.8 41 140-180 45-85 (112)
172 3bas_A Myosin heavy chain, str 24.3 96 0.0033 24.4 4.6 7 193-199 73-79 (89)
173 3cve_A Homer protein homolog 1 24.2 2.5E+02 0.0085 21.7 7.9 32 140-171 7-38 (72)
174 2fiu_A Conserved hypothetical 24.2 46 0.0016 26.5 2.7 19 42-60 65-83 (99)
175 3vmx_A Voltage-gated hydrogen 24.2 2E+02 0.007 20.7 6.9 31 148-178 5-35 (48)
176 3mab_A Uncharacterized protein 24.0 16 0.00053 29.6 -0.1 34 16-49 55-90 (93)
177 3w03_C DNA repair protein XRCC 24.0 1.1E+02 0.0038 27.6 5.5 32 142-173 147-178 (184)
178 2z5i_A TM, general control pro 23.9 1.5E+02 0.0053 21.2 5.2 27 145-171 10-36 (52)
179 2z5i_A TM, general control pro 23.9 2E+02 0.007 20.6 7.2 39 147-185 5-43 (52)
180 1rjj_A Expressed protein; beta 23.5 31 0.0011 27.5 1.6 20 39-58 65-84 (111)
181 3h0g_A DNA-directed RNA polyme 23.2 17 0.00059 42.9 0.0 116 211-326 1629-1746(1752)
182 3mtu_E Head morphogenesis prot 23.2 2.7E+02 0.0094 21.8 8.8 33 142-174 32-64 (77)
183 3onj_A T-snare VTI1; helix, HA 23.0 2.3E+02 0.008 22.4 6.7 49 142-190 36-91 (97)
184 1ny5_A Transcriptional regulat 22.9 15 0.0005 35.8 -0.6 54 323-378 199-252 (387)
185 3cvf_A Homer-3, homer protein 22.8 2.8E+02 0.0095 21.8 7.9 42 139-180 12-53 (79)
186 2dfs_A Myosin-5A; myosin-V, in 22.8 1.9E+02 0.0066 32.4 8.2 21 149-169 986-1006(1080)
187 3u06_A Protein claret segregat 22.8 2.3E+02 0.0077 28.2 8.0 38 143-180 6-43 (412)
188 2xdj_A Uncharacterized protein 22.6 2.8E+02 0.0096 21.7 7.4 26 145-170 25-50 (83)
189 4gif_A Polycystic kidney disea 22.6 2.1E+02 0.0072 20.3 5.7 35 137-171 4-38 (45)
190 2v71_A Nuclear distribution pr 22.6 2.6E+02 0.009 25.2 7.7 33 142-174 51-83 (189)
191 2qyw_A Vesicle transport throu 22.5 3E+02 0.01 22.0 8.2 24 166-189 79-102 (102)
192 3oja_B Anopheles plasmodium-re 22.4 2.4E+02 0.0081 28.2 8.2 29 143-171 505-533 (597)
193 2oa5_A Hypothetical protein BQ 22.4 1.9E+02 0.0066 24.1 6.2 62 142-203 10-90 (110)
194 4e61_A Protein BIM1; EB1-like 21.7 3.4E+02 0.012 22.4 8.0 42 140-181 11-55 (106)
195 3okq_A BUD site selection prot 21.7 3.1E+02 0.011 23.8 7.6 16 175-190 99-114 (141)
196 1f5n_A Interferon-induced guan 21.6 2.5E+02 0.0084 29.3 8.3 39 142-180 496-534 (592)
197 4e61_A Protein BIM1; EB1-like 21.2 2.5E+02 0.0084 23.3 6.6 45 142-190 6-50 (106)
198 3azd_A Short alpha-tropomyosin 21.2 22 0.00074 24.1 0.2 28 142-169 6-33 (37)
199 2efr_A General control protein 21.2 4E+02 0.014 23.2 8.4 26 145-170 96-121 (155)
200 3w03_C DNA repair protein XRCC 21.1 1.8E+02 0.0061 26.3 6.2 33 139-171 151-183 (184)
201 1fxk_C Protein (prefoldin); ar 21.0 2.3E+02 0.0079 23.1 6.6 36 142-177 90-125 (133)
202 2xv5_A Lamin-A/C; structural p 20.8 2.9E+02 0.0099 21.2 7.5 48 142-190 7-54 (74)
203 1x8y_A Lamin A/C; structural p 20.7 3E+02 0.01 21.3 7.2 31 142-172 30-60 (86)
204 4avm_A Bridging integrator 2; 20.6 79 0.0027 28.8 3.9 17 49-65 55-71 (237)
205 1g6u_A Domain swapped dimer; d 20.3 2.3E+02 0.0078 19.8 6.1 23 156-178 22-44 (48)
206 1gd2_E Transcription factor PA 20.1 2.4E+02 0.0082 21.5 5.9 16 142-157 31-46 (70)
207 3sjb_C Golgi to ER traffic pro 20.1 3.5E+02 0.012 21.9 7.3 29 152-180 54-82 (93)
208 2xdj_A Uncharacterized protein 20.1 2.8E+02 0.0095 21.7 6.5 30 140-169 27-56 (83)
209 1lwu_C Fibrinogen gamma chain; 20.1 2.5E+02 0.0085 27.3 7.5 12 160-171 25-36 (323)
No 1
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=98.11 E-value=3.8e-07 Score=73.41 Aligned_cols=50 Identities=22% Similarity=0.306 Sum_probs=46.4
Q ss_pred cCCCCCchhhhhhhhhccc-cCCCcccccchh--------hHHHHHHHhhCCHHHHHHH
Q psy1953 8 NGTSRQLQANCYGQSIGGC-SKIPQCNENNFS--------EYEKNLKAYHNSPQYLAYM 57 (379)
Q Consensus 8 ~~~n~dl~lweigKiig~m-~~l~d~ek~~~~--------eY~~~~k~yhnSpay~ayi 57 (379)
...||++...||+|+||.| ++|++++|+.|. +|++.|.+|+.+++|++|.
T Consensus 27 ~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~~~~~~~~ 85 (92)
T 2crj_A 27 RTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQSEAYKVCT 85 (92)
T ss_dssp HHHCTTCCHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHCSS
T ss_pred HHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 3578999999999999999 999999999998 7999999999999998864
No 2
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.44 E-value=2e-05 Score=63.33 Aligned_cols=42 Identities=7% Similarity=0.064 Sum_probs=38.4
Q ss_pred CCCCCchhhhhhhhhccc-cCCCcccccchh--------hHHHHHHHhhCC
Q psy1953 9 GTSRQLQANCYGQSIGGC-SKIPQCNENNFS--------EYEKNLKAYHNS 50 (379)
Q Consensus 9 ~~n~dl~lweigKiig~m-~~l~d~ek~~~~--------eY~~~~k~yhnS 50 (379)
..||++.+.||+|+||.| ++|++++|+.|. +|++.|+.|...
T Consensus 28 ~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y~~~ 78 (92)
T 2cs1_A 28 IENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQ 78 (92)
T ss_dssp HHCCSSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHHHHHTST
T ss_pred HHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 568999999999999999 999999999998 688999988754
No 3
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=97.43 E-value=2.2e-05 Score=61.65 Aligned_cols=43 Identities=12% Similarity=0.294 Sum_probs=37.8
Q ss_pred cCCCCCchh--hhhhhhhccc-cCCCcccccchh--------hHHHHHHHhhCC
Q psy1953 8 NGTSRQLQA--NCYGQSIGGC-SKIPQCNENNFS--------EYEKNLKAYHNS 50 (379)
Q Consensus 8 ~~~n~dl~l--weigKiig~m-~~l~d~ek~~~~--------eY~~~~k~yhnS 50 (379)
...||++.+ .||+|+||.| ++|++++|+.|. +|++.|++|..+
T Consensus 27 ~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 80 (83)
T 1aab_A 27 KKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPP 80 (83)
T ss_dssp TTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred HHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 367999875 9999999999 999999999998 688888888754
No 4
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=97.37 E-value=2.9e-05 Score=62.89 Aligned_cols=41 Identities=15% Similarity=0.425 Sum_probs=36.2
Q ss_pred CCCCCch--hhhhhhhhccc-cCCCcccccchh--------hHHHHHHHhhC
Q psy1953 9 GTSRQLQ--ANCYGQSIGGC-SKIPQCNENNFS--------EYEKNLKAYHN 49 (379)
Q Consensus 9 ~~n~dl~--lweigKiig~m-~~l~d~ek~~~~--------eY~~~~k~yhn 49 (379)
..||++. ..||+|+||.| ++|++++|+.|. +|++.|++|+.
T Consensus 43 ~~~p~~~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~y~~ 94 (97)
T 2lhj_A 43 AENPEIAKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYEREKAEYAQ 94 (97)
T ss_dssp HHCTTSTTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4689999 99999999999 999999999998 67777777764
No 5
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=97.35 E-value=3e-05 Score=63.72 Aligned_cols=40 Identities=18% Similarity=0.315 Sum_probs=33.1
Q ss_pred CCCCchhhhhhhhhccc-cCCCcccccchh--------hHHHHHHHhhC
Q psy1953 10 TSRQLQANCYGQSIGGC-SKIPQCNENNFS--------EYEKNLKAYHN 49 (379)
Q Consensus 10 ~n~dl~lweigKiig~m-~~l~d~ek~~~~--------eY~~~~k~yhn 49 (379)
.++++.+.||+|+||.+ ++|+++||+.|. +|++.|++|..
T Consensus 28 ~~~~~~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~ 76 (101)
T 1v63_A 28 ELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVK 76 (101)
T ss_dssp TTTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44557788999999999 999999999998 57777777653
No 6
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=97.34 E-value=2.5e-05 Score=59.25 Aligned_cols=40 Identities=13% Similarity=0.338 Sum_probs=34.1
Q ss_pred cCCCCCchh--hhhhhhhccc-cCCCcccccchh--------hHHHHHHHh
Q psy1953 8 NGTSRQLQA--NCYGQSIGGC-SKIPQCNENNFS--------EYEKNLKAY 47 (379)
Q Consensus 8 ~~~n~dl~l--weigKiig~m-~~l~d~ek~~~~--------eY~~~~k~y 47 (379)
...||++.+ -||+|+||.| ++|++++|+.|. +|++.|++|
T Consensus 21 ~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 71 (71)
T 1ckt_A 21 KKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71 (71)
T ss_dssp HHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 457899976 9999999999 999999999998 566666655
No 7
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=97.33 E-value=3.7e-05 Score=62.82 Aligned_cols=42 Identities=12% Similarity=0.281 Sum_probs=37.2
Q ss_pred cCCCCCchhhhhhhhhccc-cCCCcccccchh--------hHHHHHHHhhC
Q psy1953 8 NGTSRQLQANCYGQSIGGC-SKIPQCNENNFS--------EYEKNLKAYHN 49 (379)
Q Consensus 8 ~~~n~dl~lweigKiig~m-~~l~d~ek~~~~--------eY~~~~k~yhn 49 (379)
...||++...||+|+||.| ++|++++|+.|. +|++.|++|..
T Consensus 30 k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~~~y~~ 80 (99)
T 1k99_A 30 AKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFRE 80 (99)
T ss_dssp HTTCTTSCSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred HHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999999 999999999998 67777777754
No 8
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=97.30 E-value=2.5e-05 Score=60.81 Aligned_cols=44 Identities=11% Similarity=0.209 Sum_probs=37.8
Q ss_pred cCCCCCchhhhhhhhhccc-cCCCcccccchh--------hHHHHHHHhhCCH
Q psy1953 8 NGTSRQLQANCYGQSIGGC-SKIPQCNENNFS--------EYEKNLKAYHNSP 51 (379)
Q Consensus 8 ~~~n~dl~lweigKiig~m-~~l~d~ek~~~~--------eY~~~~k~yhnSp 51 (379)
...||++...||+|+||.| ++|++++|+.|. +|.+.|.+|.-.|
T Consensus 22 ~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p 74 (80)
T 1gt0_D 22 AQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRP 74 (80)
T ss_dssp HTTSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCC
T ss_pred HHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCcccccCC
Confidence 4579999999999999999 999999999998 5777777776543
No 9
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=97.26 E-value=2.7e-05 Score=61.60 Aligned_cols=45 Identities=9% Similarity=0.139 Sum_probs=40.5
Q ss_pred CCCCCchhhhhhhhhccc-cCCCcccccchh--------hHHHHHHHhhCCHHH
Q psy1953 9 GTSRQLQANCYGQSIGGC-SKIPQCNENNFS--------EYEKNLKAYHNSPQY 53 (379)
Q Consensus 9 ~~n~dl~lweigKiig~m-~~l~d~ek~~~~--------eY~~~~k~yhnSpay 53 (379)
..||++...||+|+||.| ++|++++|+.|. +|.+.|..|...|.|
T Consensus 23 ~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p~~ 76 (86)
T 2lef_A 23 AESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNY 76 (86)
T ss_dssp HHSSCCCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSTTCCSCSST
T ss_pred HHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcccccCCCCC
Confidence 468999999999999999 999999999998 688888888887754
No 10
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.25 E-value=2.7e-05 Score=63.85 Aligned_cols=41 Identities=17% Similarity=0.284 Sum_probs=35.6
Q ss_pred CCCCCchhhhhhhhhccc-cCCCcccccchh--------hHHHHHHHhhC
Q psy1953 9 GTSRQLQANCYGQSIGGC-SKIPQCNENNFS--------EYEKNLKAYHN 49 (379)
Q Consensus 9 ~~n~dl~lweigKiig~m-~~l~d~ek~~~~--------eY~~~~k~yhn 49 (379)
..||++...||+|+||.| ++|++++|+.|. +|++.|.+|..
T Consensus 38 ~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~ 87 (102)
T 2co9_A 38 GQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAYRA 87 (102)
T ss_dssp HHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 469999999999999999 999999999998 56666666653
No 11
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=97.24 E-value=5.3e-05 Score=58.40 Aligned_cols=41 Identities=20% Similarity=0.417 Sum_probs=36.7
Q ss_pred CCCCCchhhhhhhhhccc-cCCCcccccchh--------hHHHHHHHhhC
Q psy1953 9 GTSRQLQANCYGQSIGGC-SKIPQCNENNFS--------EYEKNLKAYHN 49 (379)
Q Consensus 9 ~~n~dl~lweigKiig~m-~~l~d~ek~~~~--------eY~~~~k~yhn 49 (379)
..||++...||+|+||.| ++|++++|+.|. +|.+.|..|.+
T Consensus 27 ~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 76 (77)
T 1hme_A 27 GEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 76 (77)
T ss_dssp HHCTTCCHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 468999999999999999 999999999998 68888887764
No 12
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=97.22 E-value=3.5e-05 Score=62.05 Aligned_cols=42 Identities=12% Similarity=0.310 Sum_probs=36.9
Q ss_pred cCCCCCchhhhhhhhhccc-cCCCcccccchh--------hHHHHHHHhhC
Q psy1953 8 NGTSRQLQANCYGQSIGGC-SKIPQCNENNFS--------EYEKNLKAYHN 49 (379)
Q Consensus 8 ~~~n~dl~lweigKiig~m-~~l~d~ek~~~~--------eY~~~~k~yhn 49 (379)
...||++...||+|+||.| ++|++++|+.|. +|++.|.+|..
T Consensus 40 ~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~Y~~ 90 (93)
T 1cg7_A 40 RSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELYNA 90 (93)
T ss_dssp TTTCTTSCHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999999 999999999998 67777777753
No 13
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=97.15 E-value=3e-05 Score=61.31 Aligned_cols=43 Identities=9% Similarity=0.162 Sum_probs=36.7
Q ss_pred CCCCCchhhhhhhhhccc-cCCCcccccchh--------hHHHHHHHhhCCH
Q psy1953 9 GTSRQLQANCYGQSIGGC-SKIPQCNENNFS--------EYEKNLKAYHNSP 51 (379)
Q Consensus 9 ~~n~dl~lweigKiig~m-~~l~d~ek~~~~--------eY~~~~k~yhnSp 51 (379)
..||++...||+|+||.| ++|++++|+.|. +|.+.|..|.-+|
T Consensus 25 ~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p 76 (85)
T 1j46_A 25 LENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP 76 (85)
T ss_dssp HHSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCC
T ss_pred HHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCcccccCC
Confidence 468999999999999999 999999999998 5666666666544
No 14
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.10 E-value=6.3e-05 Score=59.53 Aligned_cols=40 Identities=10% Similarity=0.312 Sum_probs=34.9
Q ss_pred CCCCCch--hhhhhhhhccc-cCCCcccccchh--------hHHHHHHHhh
Q psy1953 9 GTSRQLQ--ANCYGQSIGGC-SKIPQCNENNFS--------EYEKNLKAYH 48 (379)
Q Consensus 9 ~~n~dl~--lweigKiig~m-~~l~d~ek~~~~--------eY~~~~k~yh 48 (379)
..||++. +.||+|+||.+ ++|++++|+.|. +|++.|++|.
T Consensus 36 ~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y~ 86 (86)
T 2eqz_A 36 KKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDYG 86 (86)
T ss_dssp HHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4689987 49999999999 999999999998 6777887773
No 15
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=97.08 E-value=4.8e-05 Score=58.38 Aligned_cols=40 Identities=8% Similarity=0.291 Sum_probs=35.1
Q ss_pred CCCCCchhhhhhhhhccc-cCCCcccccchh--------hHHHHHHHhhCC
Q psy1953 9 GTSRQLQANCYGQSIGGC-SKIPQCNENNFS--------EYEKNLKAYHNS 50 (379)
Q Consensus 9 ~~n~dl~lweigKiig~m-~~l~d~ek~~~~--------eY~~~~k~yhnS 50 (379)
..||++...||+|+||.| ++| ++|+.|. +|++.|++|.++
T Consensus 24 ~~~p~~~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~e~~~Y~~~ 72 (73)
T 1wxl_A 24 RENPGIKVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMRNYKPE 72 (73)
T ss_dssp HHSTTCCHHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHTTTGGGTTC
T ss_pred HHCCCCCHHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 578999999999999999 999 8899998 677788888765
No 16
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=96.99 E-value=1.7e-05 Score=62.06 Aligned_cols=31 Identities=3% Similarity=0.110 Sum_probs=29.0
Q ss_pred cCCCCCchhhhhhhhhccc-cCCCcccccchh
Q psy1953 8 NGTSRQLQANCYGQSIGGC-SKIPQCNENNFS 38 (379)
Q Consensus 8 ~~~n~dl~lweigKiig~m-~~l~d~ek~~~~ 38 (379)
..+||++...||+|+||.| ++|++++|+.|.
T Consensus 27 ~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~ 58 (82)
T 1wz6_A 27 RQEHPRLDNRGATKILADWWAVLDPKEKQKYT 58 (82)
T ss_dssp HHHCSSSCTTHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 4568999999999999999 999999999998
No 17
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=96.95 E-value=0.00012 Score=56.15 Aligned_cols=40 Identities=8% Similarity=0.301 Sum_probs=34.5
Q ss_pred cCCCCCchhhhhhhhhccc-cCCCcccccchh--------hHHHHHHHhhC
Q psy1953 8 NGTSRQLQANCYGQSIGGC-SKIPQCNENNFS--------EYEKNLKAYHN 49 (379)
Q Consensus 8 ~~~n~dl~lweigKiig~m-~~l~d~ek~~~~--------eY~~~~k~yhn 49 (379)
..+||++...||+|+||.| ++|+| |+.|. +|++.|.+|..
T Consensus 23 ~~~~p~~~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~~~~~~Y~~ 71 (73)
T 3nm9_A 23 KRENPGIKVTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRAVKEFEA 71 (73)
T ss_dssp HHHSSSCCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4679999999999999999 99998 99998 67777777753
No 18
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=96.88 E-value=4.8e-05 Score=59.45 Aligned_cols=44 Identities=11% Similarity=0.243 Sum_probs=37.8
Q ss_pred cCCCCCchhhhhhhhhccc-cCCCcccccchh--------hHHHHHHHhhCCH
Q psy1953 8 NGTSRQLQANCYGQSIGGC-SKIPQCNENNFS--------EYEKNLKAYHNSP 51 (379)
Q Consensus 8 ~~~n~dl~lweigKiig~m-~~l~d~ek~~~~--------eY~~~~k~yhnSp 51 (379)
...||++...||+|+||.| ++|++++|+.|. +|.+.|.+|.-+|
T Consensus 26 ~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~P 78 (83)
T 3f27_D 26 AQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRP 78 (83)
T ss_dssp HHHCSSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCC
T ss_pred HHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCCCCeeCC
Confidence 4578999999999999999 999999999998 5777777776554
No 19
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=96.82 E-value=7.7e-05 Score=57.33 Aligned_cols=31 Identities=6% Similarity=0.095 Sum_probs=28.8
Q ss_pred cCCCCCchhhhhhhhhccc-cCCCcccccchh
Q psy1953 8 NGTSRQLQANCYGQSIGGC-SKIPQCNENNFS 38 (379)
Q Consensus 8 ~~~n~dl~lweigKiig~m-~~l~d~ek~~~~ 38 (379)
..+||++..-||+|+||.| ++|++++|+.|.
T Consensus 24 ~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~ 55 (76)
T 1hry_A 24 ALENPRMRNSEISKQLGYQWKMLTEAEKWPFF 55 (76)
T ss_dssp HHHCSCCSSSHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHCcCCCHHHHHHHHHhHHHhCCHHHHHHHH
Confidence 3568999999999999999 999999999998
No 20
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=96.80 E-value=8.1e-05 Score=57.52 Aligned_cols=43 Identities=9% Similarity=0.138 Sum_probs=36.2
Q ss_pred cCCCCCchhhhhhhhhccc-cCCCcccccchh--------hHHHHHHHhhCC
Q psy1953 8 NGTSRQLQANCYGQSIGGC-SKIPQCNENNFS--------EYEKNLKAYHNS 50 (379)
Q Consensus 8 ~~~n~dl~lweigKiig~m-~~l~d~ek~~~~--------eY~~~~k~yhnS 50 (379)
..+||++..-||+|+||.| ++|++++|+.|. +|.+.+.+|.-+
T Consensus 22 ~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p~Yky~ 73 (79)
T 3u2b_C 22 MEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYKYR 73 (79)
T ss_dssp HTTSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSSSCCCC
T ss_pred HHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCeeC
Confidence 4679999999999999999 999999999998 466666666544
No 21
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=96.73 E-value=7.9e-05 Score=56.25 Aligned_cols=42 Identities=12% Similarity=0.118 Sum_probs=34.6
Q ss_pred ccCCCCCchhhhhhhhhccc-cCCCcccccchh-hHHHHHHHhh
Q psy1953 7 QNGTSRQLQANCYGQSIGGC-SKIPQCNENNFS-EYEKNLKAYH 48 (379)
Q Consensus 7 ~~~~n~dl~lweigKiig~m-~~l~d~ek~~~~-eY~~~~k~yh 48 (379)
....||++...||+|+||.| ++|++++|+.|. ++++....|.
T Consensus 21 ~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~ 64 (71)
T 4a3n_A 21 LAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHM 64 (71)
T ss_dssp HHTTCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999999 999999999998 4555544443
No 22
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=96.67 E-value=0.00016 Score=59.67 Aligned_cols=45 Identities=13% Similarity=0.287 Sum_probs=37.8
Q ss_pred cCCCCCchhhhhhhhhccc-cCCCcccccchh--------hHHHHHHHhhCCHH
Q psy1953 8 NGTSRQLQANCYGQSIGGC-SKIPQCNENNFS--------EYEKNLKAYHNSPQ 52 (379)
Q Consensus 8 ~~~n~dl~lweigKiig~m-~~l~d~ek~~~~--------eY~~~~k~yhnSpa 52 (379)
...+|++...||+|+||.| ++|++++|+.|. +|.+.|.+|.-.|.
T Consensus 49 k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Yky~Pr 102 (106)
T 4euw_A 49 ADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPR 102 (106)
T ss_dssp HHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCTTCCC---
T ss_pred HHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhhcCcCCC
Confidence 4578999999999999999 999999999998 68888888876653
No 23
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=96.57 E-value=0.00088 Score=52.13 Aligned_cols=31 Identities=3% Similarity=0.112 Sum_probs=29.0
Q ss_pred cCCCCCchhhhhhhhhccc-cCCCcccccchh
Q psy1953 8 NGTSRQLQANCYGQSIGGC-SKIPQCNENNFS 38 (379)
Q Consensus 8 ~~~n~dl~lweigKiig~m-~~l~d~ek~~~~ 38 (379)
...||++...||+|+||.| ++|++++|+.|.
T Consensus 24 ~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~ 55 (81)
T 1i11_A 24 LQAFPDMHNSNISKILGSRWKAMTNLEKQPYY 55 (81)
T ss_dssp HTTCSSCCHHHHHHHHHHHHTTSCSGGGHHHH
T ss_pred HHHCCCCCHHHHHHHHHhhhhhCCHHHHHHHH
Confidence 4579999999999999999 999999999987
No 24
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=96.40 E-value=0.00061 Score=51.18 Aligned_cols=30 Identities=7% Similarity=0.255 Sum_probs=27.1
Q ss_pred hhhhhhccc-cCCCcccccchh--------hHHHHHHHh
Q psy1953 18 CYGQSIGGC-SKIPQCNENNFS--------EYEKNLKAY 47 (379)
Q Consensus 18 eigKiig~m-~~l~d~ek~~~~--------eY~~~~k~y 47 (379)
||+|+||.+ ++|++++|+.|. +|++.|++|
T Consensus 28 ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y 66 (67)
T 3fgh_A 28 EKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 66 (67)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999 999999999998 577777766
No 25
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=96.16 E-value=0.00086 Score=54.82 Aligned_cols=40 Identities=8% Similarity=0.090 Sum_probs=35.7
Q ss_pred CCCCchhhhhhhhhccc-cCCCcccccchh--------hHHHHHHHhhCC
Q psy1953 10 TSRQLQANCYGQSIGGC-SKIPQCNENNFS--------EYEKNLKAYHNS 50 (379)
Q Consensus 10 ~n~dl~lweigKiig~m-~~l~d~ek~~~~--------eY~~~~k~yhnS 50 (379)
++++ ..=||+|++|.| +.|+++||+.|. +|++.|++|...
T Consensus 26 ~~p~-~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm~~Y~~~ 74 (91)
T 1l8y_A 26 RFKN-DRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAP 74 (91)
T ss_dssp HTTS-THHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHTTSCG
T ss_pred HcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4556 778999999999 999999999998 799999999764
No 26
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=96.06 E-value=0.00044 Score=55.22 Aligned_cols=40 Identities=3% Similarity=0.028 Sum_probs=32.9
Q ss_pred cCCCCCchhhhhhhhhccc-cCCCcccccchh-hHHHHHHHh
Q psy1953 8 NGTSRQLQANCYGQSIGGC-SKIPQCNENNFS-EYEKNLKAY 47 (379)
Q Consensus 8 ~~~n~dl~lweigKiig~m-~~l~d~ek~~~~-eY~~~~k~y 47 (379)
...||++...||+|+||.| ++|++++|+.|. ++++....|
T Consensus 40 k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y 81 (90)
T 1wgf_A 40 QEERPELSESELTRLLARMWNDLSEKKKAKYKAREAALKAQS 81 (90)
T ss_dssp HHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999 999999999998 444444444
No 27
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=95.97 E-value=0.0012 Score=54.73 Aligned_cols=37 Identities=11% Similarity=0.153 Sum_probs=32.0
Q ss_pred Cchhhhhhhhhccc-cCCCcccccchh--------hHHHHHHHhhC
Q psy1953 13 QLQANCYGQSIGGC-SKIPQCNENNFS--------EYEKNLKAYHN 49 (379)
Q Consensus 13 dl~lweigKiig~m-~~l~d~ek~~~~--------eY~~~~k~yhn 49 (379)
++.+.||+|+||.+ ++|+++||+.|. +|++.|++|..
T Consensus 38 ~~~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~ 83 (108)
T 1v64_A 38 DVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLE 83 (108)
T ss_dssp TSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78899999999999 999999999998 57777776653
No 28
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.66 E-value=0.002 Score=56.90 Aligned_cols=42 Identities=12% Similarity=0.303 Sum_probs=36.6
Q ss_pred CCCCC--chhhhhhhhhccc-cCCCcccccchh--------hHHHHHHHhhCC
Q psy1953 9 GTSRQ--LQANCYGQSIGGC-SKIPQCNENNFS--------EYEKNLKAYHNS 50 (379)
Q Consensus 9 ~~n~d--l~lweigKiig~m-~~l~d~ek~~~~--------eY~~~~k~yhnS 50 (379)
..||+ +.+.||+|+||.+ +.|+++||+.|. +|++.|++|..+
T Consensus 36 ~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 88 (173)
T 2yrq_A 36 KKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPP 88 (173)
T ss_dssp HHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHCCCC
T ss_pred HHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 46888 6899999999999 999999999998 588888888654
No 29
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=95.53 E-value=0.0016 Score=51.58 Aligned_cols=31 Identities=6% Similarity=0.078 Sum_probs=28.8
Q ss_pred cCCCCCchhhhhhhhhccc-cCCCcccccchh
Q psy1953 8 NGTSRQLQANCYGQSIGGC-SKIPQCNENNFS 38 (379)
Q Consensus 8 ~~~n~dl~lweigKiig~m-~~l~d~ek~~~~ 38 (379)
..+||++..-||+|+||.| ++|++++|+.|.
T Consensus 37 ~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~ 68 (87)
T 2e6o_A 37 TQMYPGKDNRAISVILGDRWKKMKNEERRMYT 68 (87)
T ss_dssp HHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 3568999999999999999 999999999988
No 30
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=94.94 E-value=0.0048 Score=56.74 Aligned_cols=42 Identities=7% Similarity=0.275 Sum_probs=37.6
Q ss_pred cCCCCCchhhhhhhhhccc-cCCCcccccchh--------hHHHHHHHhhC
Q psy1953 8 NGTSRQLQANCYGQSIGGC-SKIPQCNENNFS--------EYEKNLKAYHN 49 (379)
Q Consensus 8 ~~~n~dl~lweigKiig~m-~~l~d~ek~~~~--------eY~~~~k~yhn 49 (379)
...||++.+.||+|+||.+ ++|+++||+.|. +|++.|++|..
T Consensus 29 k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~ 79 (214)
T 3tq6_A 29 KAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKE 79 (214)
T ss_dssp HHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHhhhhcc
Confidence 4568999999999999999 999999999998 68888888854
No 31
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=94.84 E-value=0.0054 Score=57.31 Aligned_cols=42 Identities=7% Similarity=0.275 Sum_probs=37.7
Q ss_pred cCCCCCchhhhhhhhhccc-cCCCcccccchh--------hHHHHHHHhhC
Q psy1953 8 NGTSRQLQANCYGQSIGGC-SKIPQCNENNFS--------EYEKNLKAYHN 49 (379)
Q Consensus 8 ~~~n~dl~lweigKiig~m-~~l~d~ek~~~~--------eY~~~~k~yhn 49 (379)
...||++.+.||+|+||.+ +.|+++||+.|. +|++.|++|..
T Consensus 61 k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~ 111 (238)
T 3tmm_A 61 KAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKE 111 (238)
T ss_dssp HHHSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568999999999999999 999999999998 68888888853
No 32
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=94.79 E-value=0.0031 Score=54.75 Aligned_cols=42 Identities=7% Similarity=0.105 Sum_probs=35.2
Q ss_pred CCCCCchhhhhhhhhccc-cCCCcccccchh--------hHHHHHHHhhCC
Q psy1953 9 GTSRQLQANCYGQSIGGC-SKIPQCNENNFS--------EYEKNLKAYHNS 50 (379)
Q Consensus 9 ~~n~dl~lweigKiig~m-~~l~d~ek~~~~--------eY~~~~k~yhnS 50 (379)
..||++...||+|+||.+ ++|++++|+.|. +|.+.|+.|..+
T Consensus 25 ~~~P~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~~ 75 (159)
T 2gzk_A 25 LENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYR 75 (159)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCSSCSCC
T ss_pred HHCCCCCHHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHhhccccc
Confidence 679999999999999999 999999999988 455555555543
No 33
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.56 E-value=0.0061 Score=53.72 Aligned_cols=31 Identities=10% Similarity=0.228 Sum_probs=29.1
Q ss_pred cCCCCCchhhhhhhhhccc-cCCCcccccchh
Q psy1953 8 NGTSRQLQANCYGQSIGGC-SKIPQCNENNFS 38 (379)
Q Consensus 8 ~~~n~dl~lweigKiig~m-~~l~d~ek~~~~ 38 (379)
..+||++.+.||+|+||.| ++|++++|+.|.
T Consensus 121 ~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~ 152 (173)
T 2yrq_A 121 KGEHPGLSIGDVAKKLGEMWNNTAADDKQPYE 152 (173)
T ss_dssp HHHCSSSCHHHHHHHHHHHHHHSCGGGHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3578999999999999999 999999999998
No 34
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=94.53 E-value=0.0047 Score=53.55 Aligned_cols=31 Identities=10% Similarity=0.228 Sum_probs=29.0
Q ss_pred cCCCCCchhhhhhhhhccc-cCCCcccccchh
Q psy1953 8 NGTSRQLQANCYGQSIGGC-SKIPQCNENNFS 38 (379)
Q Consensus 8 ~~~n~dl~lweigKiig~m-~~l~d~ek~~~~ 38 (379)
..+||++.+-||+|+||.| ++|++++|+.|.
T Consensus 108 ~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~ 139 (159)
T 2gzk_A 108 KGEHPGLSIGDVAKKLGEMWNNTAADDKQPYE 139 (159)
T ss_dssp HHHCSCCCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3469999999999999999 999999999998
No 35
>2v8f_C MDIA1, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus}
Probab=94.24 E-value=0.027 Score=35.68 Aligned_cols=19 Identities=42% Similarity=0.931 Sum_probs=8.5
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q psy1953 241 PPSQGGHGAMLPPHPRPGS 259 (379)
Q Consensus 241 pp~~p~~~~~ppppp~p~~ 259 (379)
||++|++.+.|+|+|+|++
T Consensus 4 PPplPg~~giPpPpplPg~ 22 (26)
T 2v8f_C 4 PPPLPGVASIPPPPPLPGX 22 (26)
T ss_pred CCCCCCCCCCCCCCCCCCc
Confidence 3344444444444444443
No 36
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.09 E-value=0.0056 Score=48.40 Aligned_cols=31 Identities=0% Similarity=-0.194 Sum_probs=28.4
Q ss_pred cCCCCCch-hhhhhhhhccc-cCCCcccccchh
Q psy1953 8 NGTSRQLQ-ANCYGQSIGGC-SKIPQCNENNFS 38 (379)
Q Consensus 8 ~~~n~dl~-lweigKiig~m-~~l~d~ek~~~~ 38 (379)
..+||++. +-||+|+||.| +.|+++||+.|.
T Consensus 25 k~~~P~~~~~~eisK~lge~Wk~ls~eeK~~y~ 57 (81)
T 2d7l_A 25 LSDNPDFSDEADIIKEGMIRFRVLSTEERKVWA 57 (81)
T ss_dssp HHHCTTCCSHHHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHCCCCchhHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45799998 99999999999 999999999875
No 37
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=93.96 E-value=0.015 Score=54.21 Aligned_cols=36 Identities=14% Similarity=0.314 Sum_probs=29.4
Q ss_pred CCCCCchhhhhhhhhccc-cCCCcccccchh--------hHHHHHHHhh
Q psy1953 9 GTSRQLQANCYGQSIGGC-SKIPQCNENNFS--------EYEKNLKAYH 48 (379)
Q Consensus 9 ~~n~dl~lweigKiig~m-~~l~d~ek~~~~--------eY~~~~k~yh 48 (379)
+.|++ ||+|+||.| ++|++++|+.|. +|++.|++|.
T Consensus 167 ~~~p~----ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~ 211 (238)
T 3tmm_A 167 GDSPQ----EKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWE 211 (238)
T ss_dssp CSSHH----HHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHH----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45554 899999999 999999999998 5666666664
No 38
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=93.77 E-value=0.013 Score=53.85 Aligned_cols=36 Identities=14% Similarity=0.314 Sum_probs=29.6
Q ss_pred CCCCCchhhhhhhhhccc-cCCCcccccchh--------hHHHHHHHhh
Q psy1953 9 GTSRQLQANCYGQSIGGC-SKIPQCNENNFS--------EYEKNLKAYH 48 (379)
Q Consensus 9 ~~n~dl~lweigKiig~m-~~l~d~ek~~~~--------eY~~~~k~yh 48 (379)
+.+++ ||+|+||.| ++|++++|+.|. +|++.|++|.
T Consensus 135 ~~~p~----ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~ 179 (214)
T 3tq6_A 135 GDSPQ----EKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWE 179 (214)
T ss_dssp CSSHH----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44554 899999999 999999999998 5666666664
No 39
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=89.06 E-value=0.12 Score=62.76 Aligned_cols=48 Identities=10% Similarity=0.262 Sum_probs=38.9
Q ss_pred CCCCCCCCcccccCCCCceEEeechHHHHHHhc------------CcEEEEeccccCChhhhhhh
Q psy1953 325 PHPGSQHPHQNCAHPETGQLVFQEGVLAKAMRL------------GYWIILDELNLAPLPFLLYL 377 (379)
Q Consensus 325 ph~~~~~~~g~~~~~~~g~~~~~eg~l~~a~r~------------g~w~~ldelnlA~~~vl~~l 377 (379)
-++..++++|.|...+ .+|.||+|+.++|+ ++||||| +.+.++++|.|
T Consensus 963 k~~t~~el~G~~d~~t---~eW~DGils~~~R~~~~~~~~~~~~~~~WivfD--G~vD~~WIE~L 1022 (2695)
T 4akg_A 963 KVLTKESLYGSMLKAT---LEWRDGLFTSILRRVNDDITGTFKNSRIWVVFD--SDLDPEYVEAM 1022 (2695)
T ss_dssp TTSCHHHHTTEECTTT---CCEECCSHHHHHHHHHTCCCSSCSSEEEEEEEC--SCCCHHHHHTT
T ss_pred CCCCHHHhcceecCCC---CeEecChHHHHHHHHHhccccccCCCCeEEEEC--CCCCHHHHHHH
Confidence 3445566889986544 38999999999996 6799999 89999999974
No 40
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=87.82 E-value=1.3 Score=30.34 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 141 RMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKK 174 (379)
Q Consensus 141 Riq~LkkQVqsL~~eQeKLeaELqqlEeefqeKK 174 (379)
||..|..+|++|..++..|++++.++.+...+.|
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~~~ 35 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKKNAECK 35 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhcccc
Confidence 6889999999999999999999999887766544
No 41
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=84.95 E-value=0.44 Score=58.11 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=27.3
Q ss_pred chHHHHHHhcCcEEEEeccccCChhhhhhh
Q psy1953 348 EGVLAKAMRLGYWIILDELNLAPLPFLLYL 377 (379)
Q Consensus 348 eg~l~~a~r~g~w~~ldelnlA~~~vl~~l 377 (379)
.+++..+++.|.|++|||+|+++.+||+.|
T Consensus 688 g~~~~g~~~~Gaw~~~DE~nr~~~evLs~l 717 (2695)
T 4akg_A 688 SRLLVGITQIGAWGCFDEFNRLDEKVLSAV 717 (2695)
T ss_dssp HHHHHHHHHHTCEEEEETTTSSCHHHHHHH
T ss_pred hHHHHHHHhcCCEeeehhhhhcChHHHHHH
Confidence 457788999999999999999999999986
No 42
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.93 E-value=0.18 Score=40.92 Aligned_cols=26 Identities=8% Similarity=0.169 Sum_probs=24.0
Q ss_pred Cchhhhhhhhh---ccc-cCCCcccccchh
Q psy1953 13 QLQANCYGQSI---GGC-SKIPQCNENNFS 38 (379)
Q Consensus 13 dl~lweigKii---g~m-~~l~d~ek~~~~ 38 (379)
++.+=||+|+| |.| +.|+++||+.|.
T Consensus 33 ~~~~~eisK~l~~cGe~Wk~ls~eEK~pYe 62 (93)
T 2cto_A 33 GLPVARVADAIPYCSSDWALLREEEKEKYA 62 (93)
T ss_dssp TCCCSSHHHHTGGGHHHHHHSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 67788999999 999 999999999886
No 43
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=80.85 E-value=2.6 Score=28.34 Aligned_cols=29 Identities=17% Similarity=0.313 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 141 RMQVLKRQVQSLTMHQKKLEAELQQIEEK 169 (379)
Q Consensus 141 Riq~LkkQVqsL~~eQeKLeaELqqlEee 169 (379)
||..|..+|++|..+++.|+.++.++.+-
T Consensus 1 RMnQLEdKvEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 1 RMKXIEXKLXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 57789999999999999999999987654
No 44
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=79.69 E-value=2.1 Score=28.78 Aligned_cols=28 Identities=29% Similarity=0.451 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 141 RMQVLKRQVQSLTMHQKKLEAELQQIEE 168 (379)
Q Consensus 141 Riq~LkkQVqsL~~eQeKLeaELqqlEe 168 (379)
||..|..+|++|..+++.|+.|+.++..
T Consensus 1 RM~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 1 RMAQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4667889999999999999999988764
No 45
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=78.75 E-value=3.2 Score=27.99 Aligned_cols=29 Identities=17% Similarity=0.278 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 141 RMQVLKRQVQSLTMHQKKLEAELQQIEEK 169 (379)
Q Consensus 141 Riq~LkkQVqsL~~eQeKLeaELqqlEee 169 (379)
||..|..+|++|..+++.|++++.++..-
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 68889999999999999999999887653
No 46
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=78.70 E-value=6.5 Score=31.27 Aligned_cols=49 Identities=27% Similarity=0.430 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------HHHHHHHhcC
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVES------SEQFQEELKK 190 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~------sEkf~~ELKK 190 (379)
|..|++|+..+..++.++..++..+......-+.||+++ .|.-+.-|||
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~Lrk 56 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQ 56 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567999999999999999999888777766666666665 3666677776
No 47
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=78.51 E-value=3.3 Score=27.97 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 141 RMQVLKRQVQSLTMHQKKLEAELQQIEEK 169 (379)
Q Consensus 141 Riq~LkkQVqsL~~eQeKLeaELqqlEee 169 (379)
||..|..+|++|..+++.|+.++.++.+-
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 68889999999999999999999887653
No 48
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=78.16 E-value=2.5 Score=41.18 Aligned_cols=14 Identities=7% Similarity=-0.111 Sum_probs=6.3
Q ss_pred HHHhHHHHHHHhcC
Q psy1953 177 FVESSEQFQEELKK 190 (379)
Q Consensus 177 ~~E~sEkf~~ELKK 190 (379)
.++..+++.+++++
T Consensus 357 ~eeal~~~~~~~~~ 370 (449)
T 3iot_A 357 VDAALAAAQTNAAA 370 (449)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444444
No 49
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=77.48 E-value=4.1 Score=27.84 Aligned_cols=32 Identities=19% Similarity=0.320 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 141 RMQVLKRQVQSLTMHQKKLEAELQQIEEKFEA 172 (379)
Q Consensus 141 Riq~LkkQVqsL~~eQeKLeaELqqlEeefqe 172 (379)
||..|..+|++|..++..|++++.+++.-..+
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 57788999999999999999999988765543
No 50
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=76.89 E-value=1.5 Score=40.89 Aligned_cols=42 Identities=21% Similarity=0.339 Sum_probs=32.6
Q ss_pred Cccccc-CCCCceEEeechHHHHHHhcCcEEEEeccccCChhhhhhhc
Q psy1953 332 PHQNCA-HPETGQLVFQEGVLAKAMRLGYWIILDELNLAPLPFLLYLL 378 (379)
Q Consensus 332 ~~g~~~-~~~~g~~~~~eg~l~~a~r~g~w~~ldelnlA~~~vl~~l~ 378 (379)
++|... ....|.|.|..|.+ .+.+|+|||+|.++.+++..|+
T Consensus 88 l~g~~~~~~~~~~~~~~~g~l-----~~~vl~iDEi~~~~~~~~~~Ll 130 (331)
T 2r44_A 88 LIGTMIYNQHKGNFEVKKGPV-----FSNFILADEVNRSPAKVQSALL 130 (331)
T ss_dssp HHEEEEEETTTTEEEEEECTT-----CSSEEEEETGGGSCHHHHHHHH
T ss_pred cCCceeecCCCCceEeccCcc-----cccEEEEEccccCCHHHHHHHH
Confidence 455552 23458899999887 3689999999999999887765
No 51
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=76.75 E-value=3.1 Score=28.11 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 141 RMQVLKRQVQSLTMHQKKLEAELQQIEE 168 (379)
Q Consensus 141 Riq~LkkQVqsL~~eQeKLeaELqqlEe 168 (379)
||..|..+|++|..+++.|+.|+.++.+
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5778899999999999999999988764
No 52
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=76.40 E-value=4.2 Score=27.30 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 141 RMQVLKRQVQSLTMHQKKLEAELQQIEE 168 (379)
Q Consensus 141 Riq~LkkQVqsL~~eQeKLeaELqqlEe 168 (379)
||..|..+|++|..+++.|++++.++.+
T Consensus 1 RMnQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 1 RMKQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5778899999999999999999987754
No 53
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=76.33 E-value=3.3 Score=28.02 Aligned_cols=29 Identities=17% Similarity=0.363 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 141 RMQVLKRQVQSLTMHQKKLEAELQQIEEK 169 (379)
Q Consensus 141 Riq~LkkQVqsL~~eQeKLeaELqqlEee 169 (379)
||..|..+|++|..+++.|++++.++.+-
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 67889999999999999999999987653
No 54
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=73.56 E-value=11 Score=31.45 Aligned_cols=53 Identities=25% Similarity=0.393 Sum_probs=40.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------HHHHHHHhcC
Q psy1953 138 TTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVES------SEQFQEELKK 190 (379)
Q Consensus 138 t~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~------sEkf~~ELKK 190 (379)
....|..|++|+..+..++.+|..++..+......-+.|++++ .|.-+..|||
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK 76 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQ 76 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Confidence 3466999999999999999999998888777766666666655 3555556665
No 55
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=73.26 E-value=2.3 Score=44.14 Aligned_cols=35 Identities=29% Similarity=0.361 Sum_probs=32.0
Q ss_pred CceEEeechHHHHHHhcCcEEEEeccccCChhhhhhhc
Q psy1953 341 TGQLVFQEGVLAKAMRLGYWIILDELNLAPLPFLLYLL 378 (379)
Q Consensus 341 ~g~~~~~eg~l~~a~r~g~w~~ldelnlA~~~vl~~l~ 378 (379)
+| |.|+.|.++.| .|--+.|||||.++.++++.||
T Consensus 287 tG-~~~~~G~l~LA--dgGvl~lDEIn~~~~~~qsaLl 321 (506)
T 3f8t_A 287 RG-WALRAGAAVLA--DGGILAVDHLEGAPEPHRWALM 321 (506)
T ss_dssp SS-EEEEECHHHHT--TTSEEEEECCTTCCHHHHHHHH
T ss_pred CC-cccCCCeeEEc--CCCeeehHhhhhCCHHHHHHHH
Confidence 68 99999999987 6889999999999999998876
No 56
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=72.28 E-value=1.5 Score=40.59 Aligned_cols=35 Identities=34% Similarity=0.477 Sum_probs=28.7
Q ss_pred ceEEeechHHHHHHhcCcEEEEeccccCChhhhhhhc
Q psy1953 342 GQLVFQEGVLAKAMRLGYWIILDELNLAPLPFLLYLL 378 (379)
Q Consensus 342 g~~~~~eg~l~~a~r~g~w~~ldelnlA~~~vl~~l~ 378 (379)
|...|..|.+..| .+.+|+||||+..+.+++..||
T Consensus 131 ~~~~~~~g~~~~a--~~~vl~iDEi~~l~~~~~~~Ll 165 (350)
T 1g8p_A 131 GEKAFEPGLLARA--NRGYLYIDECNLLEDHIVDLLL 165 (350)
T ss_dssp CGGGEECCHHHHH--TTEEEEETTGGGSCHHHHHHHH
T ss_pred CceeecCceeeec--CCCEEEEeChhhCCHHHHHHHH
Confidence 4456778888776 5789999999999999988775
No 57
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=70.22 E-value=0.7 Score=43.58 Aligned_cols=26 Identities=12% Similarity=0.227 Sum_probs=19.8
Q ss_pred ccccccccccccchHHHHHHHhcCCC
Q psy1953 104 YSVKHVAYARYLRNHRLINEIFSDSV 129 (379)
Q Consensus 104 ~S~k~laaarfdRNhrLmsELfsd~v 129 (379)
|+.+.|-.....|..++++.|+.-+.
T Consensus 109 Ftl~DL~kP~~~Rt~~iLSalINF~~ 134 (250)
T 2ve7_C 109 FETADILCPKAKRTSRFLSGIINFIH 134 (250)
T ss_dssp CCHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred CcHhHhcCCchHHHHHHHHHHHHHHH
Confidence 77777777788888888888876543
No 58
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=69.75 E-value=5.6 Score=26.85 Aligned_cols=29 Identities=14% Similarity=0.286 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 141 RMQVLKRQVQSLTMHQKKLEAELQQIEEK 169 (379)
Q Consensus 141 Riq~LkkQVqsL~~eQeKLeaELqqlEee 169 (379)
|+..|..+|++|..+++.|+.++.++.+-
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~l 30 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAKA 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 57789999999999999999999887654
No 59
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=68.38 E-value=17 Score=27.15 Aligned_cols=36 Identities=11% Similarity=0.224 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKR 175 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKr 175 (379)
.+++.|..++.+|..++..|..++..++.+....+.
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458888899999999999999999998888765543
No 60
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=67.35 E-value=12 Score=30.40 Aligned_cols=48 Identities=8% Similarity=0.120 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC
Q psy1953 143 QVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190 (379)
Q Consensus 143 q~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~sEkf~~ELKK 190 (379)
+.+..++++-..+..-....|-.+|..|..-|.+++++...+..||-.
T Consensus 39 ~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr~eLe~ 86 (92)
T 3vp9_A 39 KDYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEEEIKHLKLGLEQ 86 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777788889999999999999999999988777777754
No 61
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=66.68 E-value=22 Score=25.86 Aligned_cols=39 Identities=18% Similarity=0.338 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 139 TNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKF 177 (379)
Q Consensus 139 ~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~ 177 (379)
.+++..++.++..|..++.+|.+.|.++.++....+..+
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778999999999999999999998888776544333
No 62
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=63.99 E-value=24 Score=26.15 Aligned_cols=35 Identities=14% Similarity=0.228 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKK 174 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKK 174 (379)
+.+..|..++..|..++..|..+|..+..+....+
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888899999999999999999988887766544
No 63
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=63.40 E-value=0.99 Score=36.46 Aligned_cols=36 Identities=8% Similarity=0.004 Sum_probs=26.9
Q ss_pred cCCCCCch--hhhhhhhhccc-cCCCcccccchh-hHHHHHHHh
Q psy1953 8 NGTSRQLQ--ANCYGQSIGGC-SKIPQCNENNFS-EYEKNLKAY 47 (379)
Q Consensus 8 ~~~n~dl~--lweigKiig~m-~~l~d~ek~~~~-eY~~~~k~y 47 (379)
+.+||++. +=||+ .| +.|++++|++|. +..+.-..|
T Consensus 42 k~enP~~s~~~~eIs----e~Wk~ls~eeK~pY~~kA~~~K~~h 81 (90)
T 2yuk_A 42 KEEFPDWTTRVKQIA----KLWRKASSQERAPYVQKARDNRAAL 81 (90)
T ss_dssp HHHCCSHHHHHHHHH----HHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHCcCccchHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 56799988 87777 88 999999999987 333333333
No 64
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=63.26 E-value=12 Score=25.29 Aligned_cols=28 Identities=7% Similarity=0.242 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 141 RMQVLKRQVQSLTMHQKKLEAELQQIEE 168 (379)
Q Consensus 141 Riq~LkkQVqsL~~eQeKLeaELqqlEe 168 (379)
|+..|..+|+++..++..|+.++.++.+
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5788889999999999999999887764
No 65
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=61.02 E-value=11 Score=39.92 Aligned_cols=66 Identities=18% Similarity=0.250 Sum_probs=47.9
Q ss_pred ccccccccchHHHHHHHhcCCCCCCcc-chhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 108 HVAYARYLRNHRLINEIFSDSVVPDVR-SVVTTNR-MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAK 173 (379)
Q Consensus 108 ~laaarfdRNhrLmsELfsd~vVpd~r-S~vt~dR-iq~LkkQVqsL~~eQeKLeaELqqlEeefqeK 173 (379)
.++...+|..++||.+.-.++++++.. ......+ |+.+..+|++...+|+.|..+|+...++|...
T Consensus 578 ~lk~~~ddI~~~ll~~~~~~~~~~~e~lf~~eL~k~~~~~~~~i~~~~~~Q~~ll~~i~~~~~~f~~~ 645 (704)
T 2xs1_A 578 DLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKM 645 (704)
T ss_dssp HHHHCCCCCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhccCccHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456777778888776666666322 1122333 89999999999999999999999999988643
No 66
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=59.99 E-value=3.6 Score=42.77 Aligned_cols=36 Identities=22% Similarity=0.236 Sum_probs=32.0
Q ss_pred CceEEeechHHHHHHhcCcEEEEeccccCChhhhhhhc
Q psy1953 341 TGQLVFQEGVLAKAMRLGYWIILDELNLAPLPFLLYLL 378 (379)
Q Consensus 341 ~g~~~~~eg~l~~a~r~g~w~~ldelnlA~~~vl~~l~ 378 (379)
.|.+.+..|.+..| .|.+++|||||.++.+++..||
T Consensus 377 ~g~~~~~~G~l~~A--~~gil~IDEid~l~~~~q~~Ll 412 (595)
T 3f9v_A 377 TGEYYLEAGALVLA--DGGIAVIDEIDKMRDEDRVAIH 412 (595)
T ss_dssp TSSCSEEECHHHHH--SSSEECCTTTTCCCSHHHHHHH
T ss_pred cccccccCCeeEec--CCCcEEeehhhhCCHhHhhhhH
Confidence 58889999999988 6789999999999999988775
No 67
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=59.79 E-value=12 Score=28.12 Aligned_cols=33 Identities=24% Similarity=0.381 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 139 TNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFE 171 (379)
Q Consensus 139 ~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefq 171 (379)
..++..|..+|..|..+++.|..++..+.+...
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456888888999998888888888888776654
No 68
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=59.20 E-value=29 Score=27.82 Aligned_cols=49 Identities=27% Similarity=0.326 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC
Q psy1953 139 TNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190 (379)
Q Consensus 139 ~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~sEkf~~ELKK 190 (379)
.+|+..+-.+|..|+.+++.|+.++..+..+.. ..+....+..+++|++
T Consensus 15 NdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~~---~~~~~~ye~~i~~Lr~ 63 (93)
T 3s4r_A 15 NDRFANLIDKVRFLEQQNKILLAELEQLKGQGK---SRLGDLYEEEMRELRR 63 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC---CCcHHHHHHHHHHHHH
Confidence 478999999999999999999999987765432 2344444556666665
No 69
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=59.15 E-value=28 Score=25.48 Aligned_cols=36 Identities=17% Similarity=0.306 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKR 175 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKr 175 (379)
.++..|..++..|..++..|..++..+..+....+.
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 448888888889999999999999888888765543
No 70
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=56.52 E-value=46 Score=27.74 Aligned_cols=38 Identities=13% Similarity=0.232 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVE 179 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E 179 (379)
++.|...++++...+..|+..|..++..+......+..
T Consensus 45 iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~ 82 (129)
T 3tnu_B 45 IQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARN 82 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666777777777777666554444333
No 71
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=56.49 E-value=4.9 Score=36.09 Aligned_cols=32 Identities=34% Similarity=0.346 Sum_probs=23.9
Q ss_pred EeechHHHHHHhcCcEEEEeccccCChhhhhhhc
Q psy1953 345 VFQEGVLAKAMRLGYWIILDELNLAPLPFLLYLL 378 (379)
Q Consensus 345 ~~~eg~l~~a~r~g~w~~ldelnlA~~~vl~~l~ 378 (379)
....|.|..| .|..|+||||+..+.++...||
T Consensus 90 ~~~~~~l~~a--~~~~l~lDEi~~l~~~~q~~Ll 121 (265)
T 2bjv_A 90 KRHPGRFERA--DGGTLFLDELATAPMMVQEKLL 121 (265)
T ss_dssp -CCCCHHHHT--TTSEEEEESGGGSCHHHHHHHH
T ss_pred ccccchhhhc--CCcEEEEechHhcCHHHHHHHH
Confidence 3445666554 4779999999999999887765
No 72
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=56.48 E-value=50 Score=24.19 Aligned_cols=28 Identities=29% Similarity=0.411 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIE 167 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlE 167 (379)
..|+.|.+||+.|+.++..|..||+.-.
T Consensus 3 asYdQL~~QVe~Lk~ENshLrrEL~dNS 30 (54)
T 1deb_A 3 ASYDQLLKQVEALKMENSNLRQELEDNS 30 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHhhH
Confidence 4588999999999999999999987533
No 73
>2e9x_A DNA replication complex GINS protein PSF1; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.1 PDB: 2eho_B*
Probab=56.41 E-value=1.9 Score=37.33 Aligned_cols=34 Identities=18% Similarity=0.340 Sum_probs=28.2
Q ss_pred hhhhhhhhccc--cCCCcccccchhhHHHHHHHhhC
Q psy1953 16 ANCYGQSIGGC--SKIPQCNENNFSEYEKNLKAYHN 49 (379)
Q Consensus 16 lweigKiig~m--~~l~d~ek~~~~eY~~~~k~yhn 49 (379)
.|++|.++-.- ..|+.+|++.|.+|.++|.+|.+
T Consensus 91 ~w~~g~~L~~~~~~~LS~~E~~f~~~Y~~lL~~y~~ 126 (149)
T 2e9x_A 91 RWEYGSVLPNALRFHMAAEEMEWFNNYKRSLATYMR 126 (149)
T ss_dssp HHHHCSSCCHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccccCChHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 59988755433 78999999988899999999965
No 74
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=55.34 E-value=46 Score=26.09 Aligned_cols=43 Identities=14% Similarity=0.277 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q psy1953 146 KRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEEL 188 (379)
Q Consensus 146 kkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~sEkf~~EL 188 (379)
..+|..|......|+..+.++-.+|.+..+|+.....++-..+
T Consensus 6 EEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~ 48 (74)
T 3swf_A 6 EEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFL 48 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444455555555555555555555544443333333
No 75
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=54.64 E-value=4.3 Score=41.59 Aligned_cols=34 Identities=29% Similarity=0.312 Sum_probs=24.6
Q ss_pred CceEE-eechHHHHHHhcCcEEEEeccccCChhhhhhhc
Q psy1953 341 TGQLV-FQEGVLAKAMRLGYWIILDELNLAPLPFLLYLL 378 (379)
Q Consensus 341 ~g~~~-~~eg~l~~a~r~g~w~~ldelnlA~~~vl~~l~ 378 (379)
.|.|. |..|.+. .+.+|+|||||.++.++...||
T Consensus 96 ~g~~~~~~~g~l~----~~~IL~IDEI~r~~~~~q~~LL 130 (500)
T 3nbx_X 96 EGRYERLTSGYLP----EAEIVFLDEIWKAGPAILNTLL 130 (500)
T ss_dssp ----CBCCTTSGG----GCSEEEEESGGGCCHHHHHHHH
T ss_pred chhHHhhhccCCC----cceeeeHHhHhhhcHHHHHHHH
Confidence 46664 7777753 3789999999999999988775
No 76
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=54.43 E-value=14 Score=27.23 Aligned_cols=35 Identities=20% Similarity=0.371 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKK 174 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKK 174 (379)
.+++.|..+|..|..++..|..++..+..+....+
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888888888888888888888888877765433
No 77
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=53.41 E-value=25 Score=34.97 Aligned_cols=50 Identities=16% Similarity=0.252 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~sEkf~~ELKK 190 (379)
.++..+++++.++....++++.+++.+++++.+..... +.....+.|||-
T Consensus 10 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r-r~l~n~~~elkg 59 (403)
T 4etp_A 10 EKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVR-RTLHNELQELRG 59 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCC
Confidence 34666666666666666666666666666665444222 222444556654
No 78
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=53.35 E-value=52 Score=23.49 Aligned_cols=36 Identities=14% Similarity=0.286 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1953 146 KRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESS 181 (379)
Q Consensus 146 kkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~s 181 (379)
..+|..|....+-|...+.++-.+|.+...|+....
T Consensus 4 Eekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRi 39 (46)
T 3swy_A 4 EEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRL 39 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555554443
No 79
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=52.97 E-value=8.1 Score=35.08 Aligned_cols=30 Identities=30% Similarity=0.320 Sum_probs=25.3
Q ss_pred hHHHHHHhc--CcEEEEeccccCChhhhhhhc
Q psy1953 349 GVLAKAMRL--GYWIILDELNLAPLPFLLYLL 378 (379)
Q Consensus 349 g~l~~a~r~--g~w~~ldelnlA~~~vl~~l~ 378 (379)
|.+..+++. |.+|+|||++.++.+++..||
T Consensus 109 ~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll 140 (311)
T 4fcw_A 109 GQLTEAVRRRPYSVILFDAIEKAHPDVFNILL 140 (311)
T ss_dssp CHHHHHHHHCSSEEEEEETGGGSCHHHHHHHH
T ss_pred chHHHHHHhCCCeEEEEeChhhcCHHHHHHHH
Confidence 678888774 569999999999999988775
No 80
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=52.52 E-value=80 Score=24.51 Aligned_cols=14 Identities=21% Similarity=0.339 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q psy1953 156 QKKLEAELQQIEEK 169 (379)
Q Consensus 156 QeKLeaELqqlEee 169 (379)
+..+..+|+++.+.
T Consensus 37 q~~~~~Elk~~~e~ 50 (72)
T 3cve_A 37 QDAFRSNLKTLLEI 50 (72)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 81
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=51.55 E-value=6.3 Score=42.36 Aligned_cols=37 Identities=32% Similarity=0.416 Sum_probs=25.6
Q ss_pred ceEEeec-hHHHHHHhc--CcEEEEeccccCChhhhhhhc
Q psy1953 342 GQLVFQE-GVLAKAMRL--GYWIILDELNLAPLPFLLYLL 378 (379)
Q Consensus 342 g~~~~~e-g~l~~a~r~--g~w~~ldelnlA~~~vl~~l~ 378 (379)
|.+.+.+ |.|+.+++. |..|+||||+.++.+|+..||
T Consensus 642 ~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll 681 (854)
T 1qvr_A 642 GYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILL 681 (854)
T ss_dssp ---------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHH
T ss_pred CCcCccccchHHHHHHhCCCeEEEEecccccCHHHHHHHH
Confidence 4455555 788888875 679999999999999998876
No 82
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=51.47 E-value=46 Score=26.27 Aligned_cols=54 Identities=19% Similarity=0.343 Sum_probs=21.7
Q ss_pred HHHHhcC--CCCCCccchhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 121 INEIFSD--SVVPDVRSVVTTNRMQVLKRQ---VQSLTMHQKKLEAELQQIEEKFEAKK 174 (379)
Q Consensus 121 msELfsd--~vVpd~rS~vt~dRiq~LkkQ---VqsL~~eQeKLeaELqqlEeefqeKK 174 (379)
|++.|.. .+||........+++.+|++- +..|..+..++..+++.+..+....+
T Consensus 21 ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~ 79 (88)
T 1nkp_A 21 LKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLK 79 (88)
T ss_dssp HHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455543 455643211223333333332 23344444444444444444433333
No 83
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=50.87 E-value=84 Score=24.79 Aligned_cols=30 Identities=10% Similarity=0.354 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFE 171 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefq 171 (379)
+..+..++++...++..+..+|+++.+.+.
T Consensus 29 v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld 58 (79)
T 3cvf_A 29 LRAMERSLEEARAERERARAEVGRAAQLLD 58 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333334444444444444433
No 84
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=50.21 E-value=8 Score=48.19 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=24.3
Q ss_pred HHHHHHhcCcEEEEeccccCChhhhhhh
Q psy1953 350 VLAKAMRLGYWIILDELNLAPLPFLLYL 377 (379)
Q Consensus 350 ~l~~a~r~g~w~~ldelnlA~~~vl~~l 377 (379)
++.-+++.|.|.++||+|.+..+||+.+
T Consensus 649 i~~G~~~~GaW~cfDEfNrl~~~vLSvv 676 (3245)
T 3vkg_A 649 IFVGLCQCGAWGCFDEFNRLEERILSAV 676 (3245)
T ss_dssp HHHHHHHHTCEEEEETTTSSCHHHHHHH
T ss_pred HHhhHhhcCcEEEehhhhcCCHHHHHHH
Confidence 3455778999999999999999999875
No 85
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=48.55 E-value=47 Score=27.82 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVES 180 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~ 180 (379)
++.|...++++...+..|+..|..++..+......+...
T Consensus 47 iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~ 85 (131)
T 3tnu_A 47 MQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEM 85 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777777776554444433
No 86
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=48.49 E-value=74 Score=26.60 Aligned_cols=9 Identities=22% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHhHH
Q psy1953 57 MAAKAKGKQ 65 (379)
Q Consensus 57 i~aK~ra~~ 65 (379)
|++|+|+++
T Consensus 3 ia~knr~ea 11 (131)
T 3tnu_A 3 TAEKNRKDA 11 (131)
T ss_dssp ---------
T ss_pred HHHHhHHHH
Confidence 344444444
No 87
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=48.41 E-value=73 Score=26.49 Aligned_cols=8 Identities=13% Similarity=0.356 Sum_probs=0.0
Q ss_pred HHHHHhHH
Q psy1953 58 AAKAKGKQ 65 (379)
Q Consensus 58 ~aK~ra~~ 65 (379)
++|+|+++
T Consensus 2 a~knr~ea 9 (129)
T 3tnu_B 2 ANRSRTEA 9 (129)
T ss_dssp --------
T ss_pred hhhhHHHH
Confidence 34444443
No 88
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=48.31 E-value=19 Score=36.26 Aligned_cols=38 Identities=21% Similarity=0.286 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1953 143 QVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVES 180 (379)
Q Consensus 143 q~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~ 180 (379)
+.+++++++.+.+.++++.++.+++.+.++.+.++.+.
T Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l 563 (597)
T 3oja_B 526 QARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAEL 563 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHH
Confidence 33333333334444444445555555555444444433
No 89
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=48.09 E-value=48 Score=25.76 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy1953 151 SLTMHQKKLEAELQQIEEKF 170 (379)
Q Consensus 151 sL~~eQeKLeaELqqlEeef 170 (379)
.|..+..++..+++.+..+.
T Consensus 51 ~L~~~~~~l~~e~~~L~~e~ 70 (80)
T 1nlw_A 51 KLEDSDRKAVHQIDQLQREQ 70 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 90
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=47.78 E-value=34 Score=27.03 Aligned_cols=30 Identities=23% Similarity=0.288 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 143 QVLKRQVQSLTMHQKKLEAELQQIEEKFEA 172 (379)
Q Consensus 143 q~LkkQVqsL~~eQeKLeaELqqlEeefqe 172 (379)
+.|-.+|.+|..+++-|..||..+.+-...
T Consensus 33 ~DLI~rvdELt~E~e~l~~El~s~~~~~~r 62 (77)
T 2w83_C 33 NDLIAKVDELTCEKDVLQGELEAVKQAKLK 62 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 445667778888888888888777665443
No 91
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=47.71 E-value=56 Score=27.97 Aligned_cols=30 Identities=13% Similarity=0.245 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFE 171 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefq 171 (379)
+-.+++++..|..+.+++..++..+..+..
T Consensus 70 l~k~~~~~~~L~~~l~~~~kE~~~lK~el~ 99 (138)
T 3hnw_A 70 YFKAKKMADSLSLDIENKDKEIYDLKHELI 99 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444433
No 92
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=47.35 E-value=1e+02 Score=26.95 Aligned_cols=79 Identities=11% Similarity=0.179 Sum_probs=42.2
Q ss_pred CCccccccccccccchHHHHHHHhcCCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH----------------HH
Q psy1953 102 DGYSVKHVAYARYLRNHRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAEL----------------QQ 165 (379)
Q Consensus 102 d~~S~k~laaarfdRNhrLmsELfsd~vVpd~rS~vt~dRiq~LkkQVqsL~~eQeKLeaEL----------------qq 165 (379)
+.++.++-..+..--+.++..++..+ ....+..+.+++++|.-+..++.+++ ..
T Consensus 8 ~~m~i~r~V~VK~iVTe~~Ke~l~~~----------l~~~i~q~d~elqQLefq~kr~~~e~~~q~~~~~~p~~~~qi~~ 77 (150)
T 4dci_A 8 TILTIKRPITVRAVVTPTWKEEAERE----------ISNGIANADQQLAQLEQEGQTVVDQVRRQSANPLDPRVQEQVAN 77 (150)
T ss_dssp CCEEBCEEEEEEEECCHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred CceEEEEEEEEEEEECHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHH
Confidence 45677766666666666776666653 12223344444444444443433333 33
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhcC
Q psy1953 166 IEEKFEAKKRKFVESSEQFQEELKK 190 (379)
Q Consensus 166 lEeefqeKKrK~~E~sEkf~~ELKK 190 (379)
+...|...+.++.+..+.+...|..
T Consensus 78 iq~q~~~ek~~r~e~k~~l~~ql~q 102 (150)
T 4dci_A 78 IQQQVAGKRSELEEQKRNLLQQQAQ 102 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666665555555544
No 93
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=46.55 E-value=11 Score=27.56 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFE 171 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEeefq 171 (379)
..++.|..+|..|..++..|..++..+.+.+.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~ 53 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDLYS 53 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33777777788888877777777777765543
No 94
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=46.33 E-value=69 Score=27.42 Aligned_cols=41 Identities=17% Similarity=0.151 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVES 180 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~ 180 (379)
.++..|..++.++..+...|..+|.....+..+-++++.+.
T Consensus 75 ~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l 115 (138)
T 3hnw_A 75 KMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKEL 115 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33666666666666666666555555555554444333333
No 95
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=45.43 E-value=70 Score=29.28 Aligned_cols=20 Identities=15% Similarity=0.209 Sum_probs=12.5
Q ss_pred HHHHHHHHHhHHHHHHHhcC
Q psy1953 171 EAKKRKFVESSEQFQEELKK 190 (379)
Q Consensus 171 qeKKrK~~E~sEkf~~ELKK 190 (379)
.+||.||++..+++.++.+.
T Consensus 185 NeKK~KIR~lq~~Ll~~~~~ 204 (213)
T 1ik9_A 185 NEKKTKIRSLHNKLLNAAQE 204 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHH
Confidence 36777777775566655543
No 96
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=44.72 E-value=84 Score=27.69 Aligned_cols=32 Identities=22% Similarity=0.294 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 143 QVLKRQVQSLTMHQKKLEAELQQIEEKFEAKK 174 (379)
Q Consensus 143 q~LkkQVqsL~~eQeKLeaELqqlEeefqeKK 174 (379)
+...+.+..|..+...++.+|.+++++..+|.
T Consensus 64 ~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~ 95 (152)
T 3a7p_A 64 DALLNTLAILQKELKSKEQEIRRLKEVIALKN 95 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666666666666655544
No 97
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=44.49 E-value=77 Score=24.59 Aligned_cols=28 Identities=18% Similarity=0.476 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 145 LKRQVQSLTMHQKKLEAELQQIEEKFEA 172 (379)
Q Consensus 145 LkkQVqsL~~eQeKLeaELqqlEeefqe 172 (379)
|.+.|..+..+.++|...+..+++++..
T Consensus 4 L~k~i~~l~~E~eel~~klk~~~ee~~~ 31 (71)
T 1s1c_X 4 LTKDIEILRRENEELTEKMKKAEEEYKL 31 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666676666666666654
No 98
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=44.38 E-value=38 Score=28.60 Aligned_cols=13 Identities=15% Similarity=0.547 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q psy1953 160 EAELQQIEEKFEA 172 (379)
Q Consensus 160 eaELqqlEeefqe 172 (379)
+.|+.++..+|..
T Consensus 67 e~E~ae~k~KYD~ 79 (115)
T 3vem_A 67 ERKMAEVQAEFRR 79 (115)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333344444433
No 99
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=43.83 E-value=75 Score=24.68 Aligned_cols=27 Identities=19% Similarity=0.399 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 146 KRQVQSLTMHQKKLEAELQQIEEKFEA 172 (379)
Q Consensus 146 kkQVqsL~~eQeKLeaELqqlEeefqe 172 (379)
.+.|..+..++++|...+..+++++..
T Consensus 3 ~k~v~~l~~E~eel~~klk~~~ee~~~ 29 (71)
T 1uix_A 3 TSDVANLANEKEELNNKLKEAQEQLSR 29 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666655553
No 100
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=43.25 E-value=12 Score=39.18 Aligned_cols=30 Identities=30% Similarity=0.346 Sum_probs=25.1
Q ss_pred hHHHHHHhc--CcEEEEeccccCChhhhhhhc
Q psy1953 349 GVLAKAMRL--GYWIILDELNLAPLPFLLYLL 378 (379)
Q Consensus 349 g~l~~a~r~--g~w~~ldelnlA~~~vl~~l~ 378 (379)
|.|+.+++. +.+|+||||+.++.+|+..||
T Consensus 547 ~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll 578 (758)
T 1r6b_X 547 GLLTDAVIKHPHAVLLLDEIEKAHPDVFNILL 578 (758)
T ss_dssp THHHHHHHHCSSEEEEEETGGGSCHHHHHHHH
T ss_pred chHHHHHHhCCCcEEEEeCccccCHHHHHHHH
Confidence 556777765 579999999999999998876
No 101
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=42.18 E-value=44 Score=24.30 Aligned_cols=22 Identities=9% Similarity=0.246 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAEL 163 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaEL 163 (379)
+..|+..+++|..+...|.+++
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~ 42 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEEN 42 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444333333333
No 102
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=41.49 E-value=13 Score=38.26 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=26.2
Q ss_pred eechHHHHHHhcCcEEEEeccccCChhhhhhhc
Q psy1953 346 FQEGVLAKAMRLGYWIILDELNLAPLPFLLYLL 378 (379)
Q Consensus 346 ~~eg~l~~a~r~g~w~~ldelnlA~~~vl~~l~ 378 (379)
+..|.+.+| +|.+|+|||+++++.++...||
T Consensus 192 i~~g~~~~a--~~gvL~LDEi~~l~~~~q~~Ll 222 (604)
T 3k1j_A 192 VEPGMIHRA--HKGVLFIDEIATLSLKMQQSLL 222 (604)
T ss_dssp EECCHHHHT--TTSEEEETTGGGSCHHHHHHHH
T ss_pred ccCceeeec--CCCEEEEechhhCCHHHHHHHH
Confidence 477888776 7889999999999998888775
No 103
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=41.22 E-value=48 Score=27.53 Aligned_cols=62 Identities=11% Similarity=0.179 Sum_probs=32.5
Q ss_pred HHHHHHHhcCCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1953 118 HRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVES 180 (379)
Q Consensus 118 hrLmsELfsd~vVpd~rS~vt~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~ 180 (379)
.+|..++++-+-+.+.+|. ..-+++.|+..+.++......+..++.....++...|+.+...
T Consensus 9 EKyrKAMVsnAQLDNEKsa-l~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L 70 (103)
T 4h22_A 9 EKYKKAMVSNAQLDNEKTN-FMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSIL 70 (103)
T ss_dssp CTHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566655444444431 2234666666666666665555555555555555444444443
No 104
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=41.19 E-value=70 Score=31.76 Aligned_cols=48 Identities=15% Similarity=0.318 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEEL 188 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~sEkf~~EL 188 (379)
+++..++.++..+..+.++|+.+++.++.+..+.+.++.++ |..+.+|
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~rr~l 50 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKE-ETVRRTL 50 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 34678888888999999999999998888888777777666 4444444
No 105
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=40.67 E-value=1.2e+02 Score=23.99 Aligned_cols=26 Identities=19% Similarity=0.436 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQ 165 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqq 165 (379)
+.|..|+-.+.+|+.++..|..+.+.
T Consensus 20 dtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 20 DTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555554444433
No 106
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=40.63 E-value=36 Score=32.26 Aligned_cols=34 Identities=21% Similarity=0.365 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 139 TNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEA 172 (379)
Q Consensus 139 ~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqe 172 (379)
..++..+.+++..|..++++|.++|+.+..+...
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~ 86 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLA 86 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999999988888877653
No 107
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=40.28 E-value=57 Score=26.10 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 139 TNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKK 174 (379)
Q Consensus 139 ~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKK 174 (379)
...|..|+++|.++..++.+++.++..+.+....-|
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k 90 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455888889999999888888888887766655444
No 108
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=39.54 E-value=83 Score=28.95 Aligned_cols=40 Identities=18% Similarity=0.294 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1953 141 RMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVES 180 (379)
Q Consensus 141 Riq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~ 180 (379)
.+..+..++..|..+.+++...+.++.++|..-+++..++
T Consensus 60 e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE 99 (213)
T 4ani_A 60 ELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQE 99 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777777777888877777666555555
No 109
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=38.82 E-value=10 Score=36.71 Aligned_cols=56 Identities=21% Similarity=0.115 Sum_probs=40.3
Q ss_pred CCCCCCCCCCCCcccccCCCCceEEeechHHHHHHhcCcEEEEeccccCChhhhhhhc
Q psy1953 321 PHYPPHPGSQHPHQNCAHPETGQLVFQEGVLAKAMRLGYWIILDELNLAPLPFLLYLL 378 (379)
Q Consensus 321 ~~~~ph~~~~~~~g~~~~~~~g~~~~~eg~l~~a~r~g~w~~ldelnlA~~~vl~~l~ 378 (379)
..++..+-+.+++|.....-+|....+.|.+..| +|-.|.||||...+.++...||
T Consensus 188 ~~~~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a--~~gtlfldei~~l~~~~Q~~Ll 243 (368)
T 3dzd_A 188 ASIPQELAESELFGHEKGAFTGALTRKKGKLELA--DQGTLFLDEVGELDQRVQAKLL 243 (368)
T ss_dssp SSSCTTTHHHHHHEECSCSSSSCCCCEECHHHHT--TTSEEEEETGGGSCHHHHHHHH
T ss_pred ccCChHHHHHHhcCccccccCCcccccCChHhhc--CCCeEEecChhhCCHHHHHHHH
Confidence 3455555555677755444446667788988766 5668999999999998877765
No 110
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=38.82 E-value=90 Score=24.89 Aligned_cols=38 Identities=18% Similarity=0.333 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKF 177 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~ 177 (379)
.+-..+..++..|..++..|..+|+.++.+....+.-|
T Consensus 36 ~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 36 MRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777788888899999999999988888876544333
No 111
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=38.45 E-value=54 Score=26.97 Aligned_cols=34 Identities=24% Similarity=0.416 Sum_probs=26.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 138 TTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFE 171 (379)
Q Consensus 138 t~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefq 171 (379)
+...|..+++++.+|..+..+|..+++.+|.+..
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456888888888888888888888877666553
No 112
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=38.24 E-value=21 Score=33.40 Aligned_cols=33 Identities=27% Similarity=0.203 Sum_probs=24.5
Q ss_pred EEeechHHHHHHhcCcEEEEeccccCChhhhhhhc
Q psy1953 344 LVFQEGVLAKAMRLGYWIILDELNLAPLPFLLYLL 378 (379)
Q Consensus 344 ~~~~eg~l~~a~r~g~w~~ldelnlA~~~vl~~l~ 378 (379)
.....|.+..| .|..|+||||+..+.++...||
T Consensus 85 ~~~~~g~~~~a--~~g~L~LDEi~~l~~~~q~~Ll 117 (304)
T 1ojl_A 85 DKRREGRFVEA--DGGTLFLDEIGDISPLMQVRLL 117 (304)
T ss_dssp -CCCCCHHHHH--TTSEEEEESCTTCCHHHHHHHH
T ss_pred hhhhcCHHHhc--CCCEEEEeccccCCHHHHHHHH
Confidence 33456766655 4678999999999998877765
No 113
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=38.02 E-value=39 Score=26.91 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 139 TNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAK 173 (379)
Q Consensus 139 ~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeK 173 (379)
...+..|+-+|.++..+...-+.+|..-.+++...
T Consensus 25 ~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~L 59 (81)
T 3qh9_A 25 LQELRHLKIKVEELENERNQYEWKLKATKAEVAQL 59 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 34456666666666555555555555555554433
No 114
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=37.93 E-value=79 Score=26.83 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1953 149 VQSLTMHQKKLEAELQQIEEK 169 (379)
Q Consensus 149 VqsL~~eQeKLeaELqqlEee 169 (379)
+++|..++++|..+|+..+++
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae 93 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAE 93 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444433333
No 115
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=37.71 E-value=1.3e+02 Score=23.94 Aligned_cols=30 Identities=33% Similarity=0.436 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 145 LKRQVQSLTMHQKKLEAELQQIEEKFEAKK 174 (379)
Q Consensus 145 LkkQVqsL~~eQeKLeaELqqlEeefqeKK 174 (379)
|.+.|.+|..+.+.++++-.+-|.+..+.|
T Consensus 24 L~qEi~~Lr~kv~elEnErlQyEkKLKsTK 53 (81)
T 3qh9_A 24 LLQELRHLKIKVEELENERNQYEWKLKATK 53 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 333344444444444444444444444443
No 116
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=37.43 E-value=40 Score=30.36 Aligned_cols=47 Identities=30% Similarity=0.393 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEEL 188 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~sEkf~~EL 188 (379)
|+..+.++..+.....+-..+|.++++++.+-+..|+...+.+.+||
T Consensus 160 yD~~~~~l~kl~~k~~kd~~kl~kae~el~~ak~~ye~ln~~L~~eL 206 (251)
T 2fic_A 160 YDSARHHYESLQTAKKKDEAKIAKAEEELIKAQKVFEEMNVDLQEEL 206 (251)
T ss_dssp HHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333332333455566666655555555444444444
No 117
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=37.29 E-value=1.2e+02 Score=27.50 Aligned_cols=14 Identities=29% Similarity=0.275 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q psy1953 156 QKKLEAELQQIEEK 169 (379)
Q Consensus 156 QeKLeaELqqlEee 169 (379)
++.|+.+|..+...
T Consensus 90 ~~~Lq~el~~l~~~ 103 (189)
T 2v71_A 90 VSVLEDDLSQTRAI 103 (189)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444433333
No 118
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=36.30 E-value=1.5e+02 Score=23.78 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1953 151 SLTMHQKKLEAELQQIEEKFE 171 (379)
Q Consensus 151 sL~~eQeKLeaELqqlEeefq 171 (379)
+|..++..++.+|++.++.+.
T Consensus 48 sL~kk~~~lE~eld~~ee~L~ 68 (101)
T 3u1c_A 48 QLEKQLRVTEDSRDQVLEELH 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334443333333
No 119
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=36.20 E-value=52 Score=26.81 Aligned_cols=35 Identities=23% Similarity=0.326 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKK 174 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKK 174 (379)
.+|-.|++++..+..+.+++..+|......|....
T Consensus 49 AKWaKL~Rk~DKl~~ele~l~~~l~~~k~~F~~~~ 83 (93)
T 3sjb_C 49 AKWTKNNRKLDSLDKEINNLKDEIQSENKAFQAHL 83 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55777777777777776666666666666665433
No 120
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=35.90 E-value=1.4e+02 Score=25.00 Aligned_cols=9 Identities=44% Similarity=0.604 Sum_probs=4.1
Q ss_pred HHHHHHhcC
Q psy1953 182 EQFQEELKK 190 (379)
Q Consensus 182 Ekf~~ELKK 190 (379)
|.+..+|++
T Consensus 58 E~~L~~Lqq 66 (112)
T 1x79_B 58 EILLEELQQ 66 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 121
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=35.84 E-value=1.1e+02 Score=25.92 Aligned_cols=29 Identities=14% Similarity=0.321 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKF 170 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeef 170 (379)
++.|+..+..|..+..+..++++++..+.
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44444444444444444444444444333
No 122
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=35.79 E-value=16 Score=38.44 Aligned_cols=31 Identities=26% Similarity=0.283 Sum_probs=24.0
Q ss_pred chHHHHHHhc--CcEEEEeccccCChhhhhhhc
Q psy1953 348 EGVLAKAMRL--GYWIILDELNLAPLPFLLYLL 378 (379)
Q Consensus 348 eg~l~~a~r~--g~w~~ldelnlA~~~vl~~l~ 378 (379)
.|.++.+++. +.+|+||||+.++.+|+..||
T Consensus 568 ~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll 600 (758)
T 3pxi_A 568 GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILL 600 (758)
T ss_dssp ---CHHHHHHCSSSEEEEECGGGSCHHHHHHHH
T ss_pred cchhhHHHHhCCCeEEEEeCccccCHHHHHHHH
Confidence 5677777765 568999999999999998876
No 123
>2q9q_C DNA replication complex GINS protein PSF1; elongated spindle, helix bundle, replication; HET: DNA; 2.36A {Homo sapiens}
Probab=34.41 E-value=7.7 Score=34.87 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=28.4
Q ss_pred hhhhhhhhccc--cCCCcccccchhhHHHHHHHhhCC
Q psy1953 16 ANCYGQSIGGC--SKIPQCNENNFSEYEKNLKAYHNS 50 (379)
Q Consensus 16 lweigKiig~m--~~l~d~ek~~~~eY~~~~k~yhnS 50 (379)
.|.+|.++-.- ..|+.+|++.|.+|.+.|.+|.+|
T Consensus 91 ~w~~~~~l~~~~~~~LS~~E~~y~~~y~~ll~~y~~~ 127 (196)
T 2q9q_C 91 RWEYGSILPNALRFHMAAEEMEWFNNYKRSLATYMRS 127 (196)
T ss_dssp HHHTCSSCCHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccCCHHHHhhCCHHHHHHHHHHHHHHHHHHHh
Confidence 58887655543 889999999888999999998653
No 124
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=34.03 E-value=1.7e+02 Score=23.95 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEE 168 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEe 168 (379)
|..++.++.++..+.+....++.++..
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~ 33 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLRE 33 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 344444444444444444444444433
No 125
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=33.99 E-value=51 Score=30.36 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1953 143 QVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVES 180 (379)
Q Consensus 143 q~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~ 180 (379)
..+..++..+....+.+..++..++.++.+.+..+.+.
T Consensus 114 le~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~ 151 (256)
T 3na7_A 114 ENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENE 151 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334444444444444444333333
No 126
>1f32_A Major pepsin inhibitor PI-3; proteinase inhibitor, hydrolase inhibitor; 1.75A {Ascaris suum} SCOP: d.62.1.1 PDB: 1f34_B*
Probab=33.00 E-value=10 Score=33.27 Aligned_cols=27 Identities=7% Similarity=0.235 Sum_probs=22.9
Q ss_pred hhccc--cCCCcccccchhhHHHHHHHhh
Q psy1953 22 SIGGC--SKIPQCNENNFSEYEKNLKAYH 48 (379)
Q Consensus 22 iig~m--~~l~d~ek~~~~eY~~~~k~yh 48 (379)
.||+. |||+.+|+++..+|++-+.+|.
T Consensus 87 Y~gg~~~RdLT~~Eq~EL~~y~~k~~a~e 115 (149)
T 1f32_A 87 FIDQKYVRDLTAKDHAEVQTFREKIAAFE 115 (149)
T ss_dssp EETTEEEEECCHHHHHHHHHHHHHHHHHH
T ss_pred EECCEeeccCCHHHHHHHHHHHHHHHHHH
Confidence 36788 9999999999889999888553
No 127
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=32.66 E-value=16 Score=33.24 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=19.9
Q ss_pred HhcCcEEEEeccccCChhhhhhhc
Q psy1953 355 MRLGYWIILDELNLAPLPFLLYLL 378 (379)
Q Consensus 355 ~r~g~w~~ldelnlA~~~vl~~l~ 378 (379)
+..+.+|+|||++..+.++...|+
T Consensus 88 ~~~~~~l~lDEi~~l~~~~~~~L~ 111 (324)
T 1hqc_A 88 LEEGDILFIDEIHRLSRQAEEHLY 111 (324)
T ss_dssp CCTTCEEEETTTTSCCHHHHHHHH
T ss_pred ccCCCEEEEECCcccccchHHHHH
Confidence 556899999999999988777654
No 128
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=32.60 E-value=1.5e+02 Score=26.19 Aligned_cols=19 Identities=16% Similarity=0.475 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLE 160 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLe 160 (379)
+..|++.+..+..+..+++
T Consensus 70 I~~L~~El~~l~~ki~dLe 88 (152)
T 3a7p_A 70 LAILQKELKSKEQEIRRLK 88 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443
No 129
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=32.23 E-value=1e+02 Score=25.48 Aligned_cols=42 Identities=19% Similarity=0.352 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESS 181 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~s 181 (379)
+.+..|++.+.+......+|+.+++.+.++..=.|+.++++.
T Consensus 69 ~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~heeEl 110 (119)
T 3ol1_A 69 NTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEI 110 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458889999999999999999999999988876666666553
No 130
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=32.21 E-value=1.4e+02 Score=28.96 Aligned_cols=64 Identities=22% Similarity=0.302 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCCchhhhhhhc
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKKPGMGPEGYLNRLS 203 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~sEkf~~ELKK~~vdeE~~~~~l~ 203 (379)
..+..|++++.....+.+++..+|...+.+..+..+.|....+.+...|+....+.+++++++.
T Consensus 123 ~~L~~L~~~i~~~q~~~~~~~~~L~~F~~~l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~ 186 (346)
T 2nrj_A 123 EGITDLRGEIQQNQKYAQQLIEELTKLRDSIGHDVRAFGSNKELLQSILKNQGADVDADQKRLE 186 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHhcccccHHHHHHHHH
Confidence 4578888888888888888888888888888888888888888788888776666666665554
No 131
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=31.95 E-value=1.2e+02 Score=23.91 Aligned_cols=36 Identities=19% Similarity=0.393 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKF 177 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~ 177 (379)
+..|.+++..+....++|+.++..++.++.+.+.++
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l 107 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEKKLNEKLKELTAQI 107 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555554444333
No 132
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=31.56 E-value=1.3e+02 Score=22.39 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 150 QSLTMHQKKLEAELQQIEEKFEAKKRKFV 178 (379)
Q Consensus 150 qsL~~eQeKLeaELqqlEeefqeKKrK~~ 178 (379)
..|+..+..|..+++.++..-.++.+.++
T Consensus 14 ~kLKq~n~~L~~kv~~Le~~c~e~eQEie 42 (58)
T 3a2a_A 14 LRLKQMNVQLAAKIQHLEFSCSEKEQEIE 42 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555444443333333
No 133
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=31.46 E-value=61 Score=31.13 Aligned_cols=23 Identities=17% Similarity=0.447 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 148 QVQSLTMHQKKLEAELQQIEEKF 170 (379)
Q Consensus 148 QVqsL~~eQeKLeaELqqlEeef 170 (379)
++++|..+++.|++++++++.+.
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~ 208 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQER 208 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555554443
No 134
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=31.35 E-value=1.2e+02 Score=24.43 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKF 177 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~ 177 (379)
...|...+.+|..+.+.|..++.++..+...-|+++
T Consensus 50 ~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~ 85 (90)
T 2wt7_B 50 KHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKS 85 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444443
No 135
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=31.23 E-value=28 Score=28.42 Aligned_cols=29 Identities=17% Similarity=0.085 Sum_probs=21.8
Q ss_pred chHHHHHHhcCcEEEEeccccCChhhhhhhc
Q psy1953 348 EGVLAKAMRLGYWIILDELNLAPLPFLLYLL 378 (379)
Q Consensus 348 eg~l~~a~r~g~w~~ldelnlA~~~vl~~l~ 378 (379)
.|.+..| +|.-|+||||+..+.++...||
T Consensus 69 ~~~~~~a--~~g~l~ldei~~l~~~~q~~Ll 97 (145)
T 3n70_A 69 NDFIALA--QGGTLVLSHPEHLTREQQYHLV 97 (145)
T ss_dssp HHHHHHH--TTSCEEEECGGGSCHHHHHHHH
T ss_pred hcHHHHc--CCcEEEEcChHHCCHHHHHHHH
Confidence 3444444 5678999999999998877765
No 136
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=31.19 E-value=1.5e+02 Score=23.74 Aligned_cols=30 Identities=20% Similarity=0.367 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEK 169 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEee 169 (379)
+++..+..++..+.....+++.++..+..+
T Consensus 23 drae~~e~~~k~~e~~~~~~E~Ei~sL~kk 52 (101)
T 3u1c_A 23 DRAEQAEADKKAAEERSKQLEDDIVQLEKQ 52 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 344444444444444444444444444333
No 137
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=31.15 E-value=1.2e+02 Score=27.17 Aligned_cols=39 Identities=8% Similarity=0.016 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVES 180 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~ 180 (379)
|....++|+.|+.++.+|+.+|....+++..-.+.+...
T Consensus 130 i~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDqT 168 (175)
T 3mud_A 130 ICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQT 168 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778888888888888888888777776544444333
No 138
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=30.62 E-value=1.4e+02 Score=20.97 Aligned_cols=31 Identities=19% Similarity=0.372 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEA 172 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqe 172 (379)
+..|..++.+|...+++|++.+.-++.+.+.
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~m 35 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQM 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 5677778888888888888888877777553
No 139
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=30.24 E-value=93 Score=24.29 Aligned_cols=35 Identities=17% Similarity=0.312 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKK 174 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKK 174 (379)
.+...+..++..|..++..|..+|..++.+....+
T Consensus 36 ~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 36 MRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44777778888888888888888888877765433
No 140
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=30.06 E-value=1.6e+02 Score=23.38 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEK 169 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEee 169 (379)
++...+..++..+.....+++.++..+..+
T Consensus 23 d~ae~~e~~~k~~e~~~~~~E~ei~sL~kK 52 (101)
T 3u59_A 23 DRAEQAEADKKQAEDRCKQLEEEQQGLQKK 52 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 334444444444444444444444443333
No 141
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=29.29 E-value=1.7e+02 Score=24.36 Aligned_cols=48 Identities=23% Similarity=0.287 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC
Q psy1953 142 MQVLKRQVQSLTM----HQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190 (379)
Q Consensus 142 iq~LkkQVqsL~~----eQeKLeaELqqlEeefqeKKrK~~E~sEkf~~ELKK 190 (379)
+..|+.+..+... .+..|+.+|..+.......+.++.+. |.-++.|-+
T Consensus 19 ~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReL-Eq~NDDLER 70 (111)
T 2v66_B 19 VEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVREL-EQANDDLER 70 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhchHHHH
Confidence 4445555544433 35566777776666665555444433 666666654
No 142
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=29.19 E-value=1.2e+02 Score=22.19 Aligned_cols=45 Identities=13% Similarity=0.128 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Q psy1953 144 VLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELK 189 (379)
Q Consensus 144 ~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~sEkf~~ELK 189 (379)
.+..++..++.+..++..++.+...+|++.. .++-..|..++..+
T Consensus 4 ~~q~~i~~le~el~~~r~e~~~q~~eYq~Ll-niK~~Le~EIatYR 48 (59)
T 1gk6_A 4 QLEDKVEELLSKNYHLENEVARLKKLVGDLL-NVKMALDIEIATYR 48 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHH
Confidence 3445555666666666666666666665433 33333344444433
No 143
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=28.99 E-value=92 Score=23.81 Aligned_cols=26 Identities=15% Similarity=0.268 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIE 167 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlE 167 (379)
|..|..+++.+..+.++|..+...++
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~ 74 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444433333
No 144
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=28.70 E-value=1.5e+02 Score=29.86 Aligned_cols=6 Identities=33% Similarity=1.038 Sum_probs=2.2
Q ss_pred HHHHHH
Q psy1953 142 MQVLKR 147 (379)
Q Consensus 142 iq~Lkk 147 (379)
|..|++
T Consensus 122 i~~lk~ 127 (390)
T 1deq_A 122 IEILRR 127 (390)
T ss_pred HHHHHH
Confidence 333333
No 145
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=28.69 E-value=99 Score=22.37 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAEL 163 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaEL 163 (379)
...|+.++..|..+.++|+.+|
T Consensus 28 ~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 28 LAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433
No 146
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=28.68 E-value=34 Score=27.85 Aligned_cols=22 Identities=5% Similarity=-0.065 Sum_probs=18.4
Q ss_pred cCcEEEEeccccCChhhhhhhc
Q psy1953 357 LGYWIILDELNLAPLPFLLYLL 378 (379)
Q Consensus 357 ~g~w~~ldelnlA~~~vl~~l~ 378 (379)
+|..|+||||+..+.++...|+
T Consensus 75 ~~~~l~lDei~~l~~~~q~~Ll 96 (143)
T 3co5_A 75 EGGVLYVGDIAQYSRNIQTGIT 96 (143)
T ss_dssp TTSEEEEEECTTCCHHHHHHHH
T ss_pred CCCeEEEeChHHCCHHHHHHHH
Confidence 4678999999999998877664
No 147
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=28.63 E-value=1.8e+02 Score=23.21 Aligned_cols=7 Identities=29% Similarity=0.880 Sum_probs=3.1
Q ss_pred HHHHHhc
Q psy1953 120 LINEIFS 126 (379)
Q Consensus 120 LmsELfs 126 (379)
+|.+.|.
T Consensus 6 ~m~~F~~ 12 (127)
T 1ez3_A 6 FMDEFFE 12 (127)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 4444443
No 148
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=28.34 E-value=97 Score=26.02 Aligned_cols=33 Identities=24% Similarity=0.392 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1953 148 QVQSLTMHQKKLEAELQQIEEKFEAKKRKFVES 180 (379)
Q Consensus 148 QVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~ 180 (379)
.+.+|+.+.+.++...+++.+-|.+|-..|.+.
T Consensus 5 e~~~l~~qi~~~ekr~~RLKevF~~ks~eFRea 37 (123)
T 4dzo_A 5 EVAELKKQVESAELKNQRLKEVFQTKIQEFRKA 37 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556666667777777766666665
No 149
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=28.22 E-value=60 Score=29.60 Aligned_cols=47 Identities=13% Similarity=0.212 Sum_probs=16.1
Q ss_pred ccccccchHHHHHHHhcCCCCCCccchhhhhHHHHHHHHHHHHHHHH
Q psy1953 110 AYARYLRNHRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQ 156 (379)
Q Consensus 110 aaarfdRNhrLmsELfsd~vVpd~rS~vt~dRiq~LkkQVqsL~~eQ 156 (379)
+--|-+-.|.|++.|.++..+-........++++.|++|+++++.+.
T Consensus 11 ~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 11 VKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33445556667776666421110111122333555555555444433
No 150
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=28.06 E-value=2.1e+02 Score=27.03 Aligned_cols=43 Identities=5% Similarity=0.002 Sum_probs=31.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1953 138 TTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVES 180 (379)
Q Consensus 138 t~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~ 180 (379)
....+..++.+++++....+.++.+|..+..++......+.+.
T Consensus 224 p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~ 266 (357)
T 3rrk_A 224 LGKAAARMKERARLAPEELVGIREEVARLSRESGEALIALWTR 266 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455889999999999999999888888877755444443333
No 151
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=27.80 E-value=1.4e+02 Score=29.82 Aligned_cols=50 Identities=14% Similarity=0.169 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~sEkf~~ELKK 190 (379)
.++..+++++.++..+.+++.++++.+++++.+.. ...+.....+.+||.
T Consensus 10 ~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~-~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 10 TEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSN-MERKELHNTVMDLRD 59 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCC
Confidence 34566666666666666666666666666554322 222222445556655
No 152
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=26.95 E-value=26 Score=27.72 Aligned_cols=17 Identities=18% Similarity=0.364 Sum_probs=14.0
Q ss_pred HHHHHhhCCHHHHHHHH
Q psy1953 42 KNLKAYHNSPQYLAYMA 58 (379)
Q Consensus 42 ~~~k~yhnSpay~ayi~ 58 (379)
++.+++++||+||+.+.
T Consensus 64 ~aa~a~y~SpeYq~a~~ 80 (94)
T 3lo3_A 64 EDAYNWYHSEEYQALIS 80 (94)
T ss_dssp HHHHHHHHSHHHHTTHH
T ss_pred HHHHHHHCCHHHHHHHH
Confidence 67888899999999544
No 153
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=26.87 E-value=1.7e+02 Score=20.60 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 152 LTMHQKKLEAELQQIEEKFEAKKRKFVE 179 (379)
Q Consensus 152 L~~eQeKLeaELqqlEeefqeKKrK~~E 179 (379)
|..+..++..|+.+.+++..+.+.++.+
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlke 34 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQ 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555444444433333
No 154
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=26.85 E-value=70 Score=28.20 Aligned_cols=72 Identities=17% Similarity=0.273 Sum_probs=0.0
Q ss_pred hHHHHHHHhcCCCCCCc---------cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHH
Q psy1953 117 NHRLINEIFSDSVVPDV---------RSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKF----------EAKKRKF 177 (379)
Q Consensus 117 NhrLmsELfsd~vVpd~---------rS~vt~dRiq~LkkQVqsL~~eQeKLeaELqqlEeef----------qeKKrK~ 177 (379)
+.+||+++-..+.+.|. .+......+..++.++..+..+.+....++.++..++ ...+.++
T Consensus 5 StKLI~Ain~qs~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~i 84 (154)
T 2ocy_A 5 STQLIESVDKQSHLEEQLNKSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKL 84 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHHh
Q psy1953 178 VESSEQFQEEL 188 (379)
Q Consensus 178 ~E~sEkf~~EL 188 (379)
..+.|.+-..|
T Consensus 85 e~ElEeLTasL 95 (154)
T 2ocy_A 85 NKEVEDLTASL 95 (154)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
No 155
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=26.62 E-value=2.1e+02 Score=26.16 Aligned_cols=32 Identities=9% Similarity=0.228 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 143 QVLKRQVQSLTMHQKKLEAELQQIEEKFEAKK 174 (379)
Q Consensus 143 q~LkkQVqsL~~eQeKLeaELqqlEeefqeKK 174 (379)
..+.+++.+++...+.++.++..+++++.+.+
T Consensus 107 ~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~ 138 (256)
T 3na7_A 107 NQANREIENLQNEIKRKSEKQEDLKKEMLELE 138 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 156
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=26.59 E-value=2.2e+02 Score=21.81 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKF 170 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeef 170 (379)
++..+++++.|+.+...+...++.++.+.
T Consensus 4 m~aiKkkmqaLk~Ekdna~e~~e~lE~ER 32 (75)
T 3mtu_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADK 32 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888888888754
No 157
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=26.40 E-value=1.6e+02 Score=22.79 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 147 RQVQSLTMHQKKLEAELQQIEEKF 170 (379)
Q Consensus 147 kQVqsL~~eQeKLeaELqqlEeef 170 (379)
.++.+|+.+.+-++..|+.++...
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v 37 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEAL 37 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 158
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=26.34 E-value=2e+02 Score=21.87 Aligned_cols=50 Identities=16% Similarity=0.406 Sum_probs=22.0
Q ss_pred HHHHhcC--CCCCCccchhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 121 INEIFSD--SVVPDVRSVVTTNRMQVLKRQ---VQSLTMHQKKLEAELQQIEEKFE 171 (379)
Q Consensus 121 msELfsd--~vVpd~rS~vt~dRiq~LkkQ---VqsL~~eQeKLeaELqqlEeefq 171 (379)
|++.|.. .+||...+ ...++..+|..- +..|..+..+|+.+++.+..+..
T Consensus 17 in~~f~~Lr~lvP~~~~-~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~ 71 (83)
T 1nkp_B 17 IKDSFHSLRDSVPSLQG-EKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNA 71 (83)
T ss_dssp HHHHHHHHHTTSGGGTT-SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444442 45664321 223445555443 33444444455554444444433
No 159
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=26.11 E-value=64 Score=33.39 Aligned_cols=14 Identities=7% Similarity=0.285 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHh
Q psy1953 167 EEKFEAKKRKFVES 180 (379)
Q Consensus 167 EeefqeKKrK~~E~ 180 (379)
..+|+.++..+++.
T Consensus 82 ~AeY~~kl~aYe~~ 95 (497)
T 3iox_A 82 LADYPVKLKAYEDE 95 (497)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444444333
No 160
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=25.85 E-value=8.3 Score=38.74 Aligned_cols=29 Identities=14% Similarity=0.337 Sum_probs=18.5
Q ss_pred ccCCCCceEEeechHHHHHHh---cCcEEEEe
Q psy1953 336 CAHPETGQLVFQEGVLAKAMR---LGYWIILD 364 (379)
Q Consensus 336 ~~~~~~g~~~~~eg~l~~a~r---~g~w~~ld 364 (379)
|.....+.+.|..|-.+.-+. .|||..-.
T Consensus 94 ~~~~~~~el~~~~gd~i~v~~~~~~~ww~~~~ 125 (535)
T 2h8h_A 94 YESRTETDLSFKKGERLQIVNNTEGDWWLAHS 125 (535)
T ss_dssp BCCCSSSBCCBCTTCEEEEEECSSSSEEEEEE
T ss_pred cCCcCCCcCCcCCCCEEEEEEecCCCceEEEE
Confidence 444455778888886665543 47887643
No 161
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=25.59 E-value=2.5e+02 Score=22.11 Aligned_cols=33 Identities=18% Similarity=0.495 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEA 172 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqe 172 (379)
.++..+...+..+..+.++++.++..++.++.+
T Consensus 77 ~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 77 EKIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555555555555555555555555555543
No 162
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=25.37 E-value=2.2e+02 Score=21.99 Aligned_cols=41 Identities=22% Similarity=0.515 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q psy1953 148 QVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEEL 188 (379)
Q Consensus 148 QVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~sEkf~~EL 188 (379)
.++++...+..|+..|..++..+......+......+.++|
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL 42 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEI 42 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 163
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=25.34 E-value=71 Score=24.16 Aligned_cols=33 Identities=27% Similarity=0.484 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 139 TNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFE 171 (379)
Q Consensus 139 ~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefq 171 (379)
-.+|..|...+...+..|++++.+|+-++..-.
T Consensus 11 gekI~~L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ 43 (64)
T 3t97_C 11 GEKITSLHREVEKVKLDQKRLDQELDFILSQQK 43 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355888888888899999999998888776644
No 164
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=25.14 E-value=1.2e+02 Score=29.62 Aligned_cols=13 Identities=15% Similarity=0.110 Sum_probs=6.9
Q ss_pred HhhCCHHHHHHHH
Q psy1953 46 AYHNSPQYLAYMA 58 (379)
Q Consensus 46 ~yhnSpay~ayi~ 58 (379)
.|-.|+..+.++.
T Consensus 296 ~~l~s~e~q~~~~ 308 (471)
T 3mq9_A 296 NYLLTDEGLEAVN 308 (471)
T ss_dssp HTTSSHHHHHHHH
T ss_pred HHhcCHHHHHHHH
Confidence 3555665555443
No 165
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=24.97 E-value=32 Score=31.63 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=20.2
Q ss_pred HhcCcEEEEeccccCChhhhhhhc
Q psy1953 355 MRLGYWIILDELNLAPLPFLLYLL 378 (379)
Q Consensus 355 ~r~g~w~~ldelnlA~~~vl~~l~ 378 (379)
...|..|+||||+..+.+++..||
T Consensus 104 ~~~~~vl~lDEi~~l~~~~~~~Ll 127 (338)
T 3pfi_A 104 LSEGDILFIDEIHRLSPAIEEVLY 127 (338)
T ss_dssp CCTTCEEEEETGGGCCHHHHHHHH
T ss_pred ccCCCEEEEechhhcCHHHHHHHH
Confidence 456899999999999998887765
No 166
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=24.88 E-value=38 Score=26.61 Aligned_cols=18 Identities=22% Similarity=0.218 Sum_probs=16.3
Q ss_pred hHHHHHHHhhCCHHHHHH
Q psy1953 39 EYEKNLKAYHNSPQYLAY 56 (379)
Q Consensus 39 eY~~~~k~yhnSpay~ay 56 (379)
+=.+.+++|.+.|+++++
T Consensus 64 ~s~e~l~~Y~~hP~H~~~ 81 (103)
T 2qyc_A 64 VDAAAHDAYQVCPAHVAM 81 (103)
T ss_dssp SSHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHhCCHHHHHH
Confidence 667899999999999997
No 167
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=24.73 E-value=2.6e+02 Score=22.10 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKK 158 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeK 158 (379)
+..|+.+...|..+.+.
T Consensus 29 ieELKekN~~L~~e~~e 45 (81)
T 2jee_A 29 IEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444433
No 168
>1tr0_A Stable protein 1; plant protein; 1.80A {Populus tremula} SCOP: d.58.4.4 PDB: 1si9_A
Probab=24.56 E-value=33 Score=27.20 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=17.0
Q ss_pred hHHHHHHHhhCCHHHHHHH
Q psy1953 39 EYEKNLKAYHNSPQYLAYM 57 (379)
Q Consensus 39 eY~~~~k~yhnSpay~ayi 57 (379)
+=.+.+++|.+.|++++++
T Consensus 72 ~s~e~l~~Y~~hP~H~~~~ 90 (108)
T 1tr0_A 72 ESKSGLQEYLDSAALAAFA 90 (108)
T ss_dssp SSHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHhCCHHHHHHH
Confidence 6678999999999999986
No 169
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=24.54 E-value=2.6e+02 Score=21.97 Aligned_cols=45 Identities=16% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy1953 143 QVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEE 187 (379)
Q Consensus 143 q~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~sEkf~~E 187 (379)
+.|++++.+...+..-=...|.+.+++..+.+.++.+..+++..|
T Consensus 10 DKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E 54 (78)
T 3iv1_A 10 DKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQE 54 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
No 170
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=24.42 E-value=1.6e+02 Score=22.96 Aligned_cols=35 Identities=14% Similarity=0.382 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRK 176 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK 176 (379)
...|.+++..+....++|+.++..++.++.+.+.+
T Consensus 67 ~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~ 101 (107)
T 1fxk_A 67 TEELQEKLETLQLREKTIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555555555555554444433
No 171
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=24.35 E-value=2.1e+02 Score=23.91 Aligned_cols=41 Identities=15% Similarity=0.247 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVES 180 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~ 180 (379)
.+++.|..+++..+....+|.....++...-++..+++...
T Consensus 45 ~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~ 85 (112)
T 1x79_B 45 HQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQS 85 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555554444444444444444444444433444333
No 172
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=24.31 E-value=96 Score=24.39 Aligned_cols=7 Identities=14% Similarity=-0.035 Sum_probs=2.6
Q ss_pred CCchhhh
Q psy1953 193 MGPEGYL 199 (379)
Q Consensus 193 vdeE~~~ 199 (379)
+++|...
T Consensus 73 ~eLE~~l 79 (89)
T 3bas_A 73 YHLENEV 79 (89)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 173
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=24.24 E-value=2.5e+02 Score=21.70 Aligned_cols=32 Identities=13% Similarity=0.236 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFE 171 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEeefq 171 (379)
.+++.+....++|+.+...|+..|+....+..
T Consensus 7 ~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~ 38 (72)
T 3cve_A 7 MKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQD 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555554444433
No 174
>2fiu_A Conserved hypothetical protein; alpha-beta, dimeric alpha-beta barrels, structural genomics, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.58.4.16
Probab=24.22 E-value=46 Score=26.47 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=15.0
Q ss_pred HHHHHhhCCHHHHHHHHHH
Q psy1953 42 KNLKAYHNSPQYLAYMAAK 60 (379)
Q Consensus 42 ~~~k~yhnSpay~ayi~aK 60 (379)
++.+++.+||+||+.+...
T Consensus 65 ~aa~~~~~s~~Yq~a~~~R 83 (99)
T 2fiu_A 65 QHAIDCYNSPEYQAAAKIR 83 (99)
T ss_dssp HHHHHHHHSHHHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHHH
Confidence 6788999999999855443
No 175
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=24.17 E-value=2e+02 Score=20.69 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 148 QVQSLTMHQKKLEAELQQIEEKFEAKKRKFV 178 (379)
Q Consensus 148 QVqsL~~eQeKLeaELqqlEeefqeKKrK~~ 178 (379)
++..|+.-+..|..++..++..-.++.++++
T Consensus 5 ~l~kLKe~n~~L~~kv~~Le~~c~~~eQEie 35 (48)
T 3vmx_A 5 QILRLKQINIQLATKIQHLEFSCSEKEQEIE 35 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 3444444455555555555444444443333
No 176
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=24.01 E-value=16 Score=29.55 Aligned_cols=34 Identities=9% Similarity=0.294 Sum_probs=27.1
Q ss_pred hhhhhhhhccc--cCCCcccccchhhHHHHHHHhhC
Q psy1953 16 ANCYGQSIGGC--SKIPQCNENNFSEYEKNLKAYHN 49 (379)
Q Consensus 16 lweigKiig~m--~~l~d~ek~~~~eY~~~~k~yhn 49 (379)
||-+---|-|+ .+|++++|+.-.+|-+++|++|.
T Consensus 55 L~aL~gAi~G~~w~~l~~~~K~~L~~~~~~lk~~~~ 90 (93)
T 3mab_A 55 LYALEGAVQGIRWHGLDEAKKIELKKFHQSLEGHHH 90 (93)
T ss_dssp HHHHHHHHHTSCGGGSCHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHcCCcHHHCCHHHHHHHHHHHHHhhcccc
Confidence 78877777777 99999999988889999998874
No 177
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=23.99 E-value=1.1e+02 Score=27.59 Aligned_cols=32 Identities=6% Similarity=0.107 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAK 173 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeK 173 (379)
+.-+-+++++|..++.+|+.+-+++..++..-
T Consensus 147 id~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~ 178 (184)
T 3w03_C 147 ICYCLDTIAENQAKNEHLQKENERLLRDWNDV 178 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566666666666666666666555533
No 178
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=23.94 E-value=1.5e+02 Score=21.25 Aligned_cols=27 Identities=30% Similarity=0.366 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 145 LKRQVQSLTMHQKKLEAELQQIEEKFE 171 (379)
Q Consensus 145 LkkQVqsL~~eQeKLeaELqqlEeefq 171 (379)
..+.|+.|.+...+|+.+|..-.+++.
T Consensus 10 AERsV~KLek~ID~LEdeL~~eKek~~ 36 (52)
T 2z5i_A 10 LENEVARLKKLVDDLEDELYAQKLKYK 36 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 344555555555555555554444433
No 179
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=23.86 E-value=2e+02 Score=20.59 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy1953 147 RQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQ 185 (379)
Q Consensus 147 kQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~sEkf~ 185 (379)
.+.+-.+..-.||+.+|+++|.+....|-++...++.+.
T Consensus 5 ~~aefAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD 43 (52)
T 2z5i_A 5 SKNYHLENEVARLKKLVDDLEDELYAQKLKYKAISEELD 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 345566677888999999999888777766666654433
No 180
>1rjj_A Expressed protein; beta barrel, homodimer, structural genomics, protein structure initiative, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: d.58.4.4
Probab=23.48 E-value=31 Score=27.54 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=17.4
Q ss_pred hHHHHHHHhhCCHHHHHHHH
Q psy1953 39 EYEKNLKAYHNSPQYLAYMA 58 (379)
Q Consensus 39 eY~~~~k~yhnSpay~ayi~ 58 (379)
+=.+.+++|.++|++++++.
T Consensus 65 ~s~e~l~~Y~~hP~H~~~~~ 84 (111)
T 1rjj_A 65 ENKDGYVAFTSHPLHVEFSA 84 (111)
T ss_dssp SSHHHHHHHHTSHHHHHHHH
T ss_pred CCHHHHHHHhCCHHHHHHHH
Confidence 66789999999999999764
No 181
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=23.20 E-value=17 Score=42.90 Aligned_cols=116 Identities=21% Similarity=0.274 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCC
Q psy1953 211 PVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQYPGASQP-LAPRPPH 289 (379)
Q Consensus 211 ~~~~~~~~~~p~p~p~~~~~~~~~~~~~pppp~~p~~~~~ppppp~p~~~p~pP~~p~~~pp~~p~~~~~~~-~~~~~~~ 289 (379)
..+..-++..|+..|..+......+.-.|..|......+...++.+...+..|...+..|...+..|..++. +..+++.
T Consensus 1629 ptSPs~sptsPsysptsPs~sptSPs~sptspsysp~SPsySp~Sps~Sp~sps~sp~sP~~sp~sPsySp~sp~~sp~s 1708 (1752)
T 3h0g_A 1629 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1708 (1752)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCC
Q ss_pred CCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy1953 290 GQYPYPYPQY-PTHPYYGNAYPYPQHMNAGRPPHYPPH 326 (379)
Q Consensus 290 ~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ph 326 (379)
+.+.++.|+| |+.++|..+-|.......+..+..+.+
T Consensus 1709 p~~sP~sp~~sp~sP~ysp~sps~sp~sp~~Sp~sp~~ 1746 (1752)
T 3h0g_A 1709 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1746 (1752)
T ss_dssp --------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
No 182
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=23.16 E-value=2.7e+02 Score=21.83 Aligned_cols=33 Identities=18% Similarity=0.203 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKK 174 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKK 174 (379)
++.|+.-.-+.++.+.+|+.+|....+++..-.
T Consensus 32 ~~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~ 64 (77)
T 3mtu_E 32 LQQLRVNYGSFVSEYNDLEEKVAHAKEENLNMH 64 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 555555555555556666666655555544333
No 183
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=22.95 E-value=2.3e+02 Score=22.37 Aligned_cols=49 Identities=14% Similarity=0.314 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhHHH-HHHHhcC
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQI------EEKFEAKKRKFVESSEQ-FQEELKK 190 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqql------EeefqeKKrK~~E~sEk-f~~ELKK 190 (379)
+....+.+.+...-...++-|+.-+ ..++..|.+.+....++ +..+||+
T Consensus 36 i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~ 91 (97)
T 3onj_A 36 LKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQS 91 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444344444444433 45566666777777666 6666654
No 184
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=22.89 E-value=15 Score=35.77 Aligned_cols=54 Identities=24% Similarity=0.137 Sum_probs=34.5
Q ss_pred CCCCCCCCCCcccccCCCCceEEeechHHHHHHhcCcEEEEeccccCChhhhhhhc
Q psy1953 323 YPPHPGSQHPHQNCAHPETGQLVFQEGVLAKAMRLGYWIILDELNLAPLPFLLYLL 378 (379)
Q Consensus 323 ~~ph~~~~~~~g~~~~~~~g~~~~~eg~l~~a~r~g~w~~ldelnlA~~~vl~~l~ 378 (379)
++..+-+.+++|.-...-.|......|.+-.| +|-.|.||||...+.++...||
T Consensus 199 ~~~~~~~~elfg~~~g~~tga~~~~~g~~~~a--~~gtlfldei~~l~~~~q~~Ll 252 (387)
T 1ny5_A 199 IPRDIFEAELFGYEKGAFTGAVSSKEGFFELA--DGGTLFLDEIGELSLEAQAKLL 252 (387)
T ss_dssp SCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHT--TTSEEEEESGGGCCHHHHHHHH
T ss_pred CCHHHHHHHhcCCCCCCCCCcccccCCceeeC--CCcEEEEcChhhCCHHHHHHHH
Confidence 33333334455533222235555677877665 5679999999999999877765
No 185
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=22.83 E-value=2.8e+02 Score=21.77 Aligned_cols=42 Identities=14% Similarity=0.230 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1953 139 TNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVES 180 (379)
Q Consensus 139 ~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~ 180 (379)
..+++.+....++|+.+...|+..|+....+....+..+...
T Consensus 12 ~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l 53 (79)
T 3cvf_A 12 QQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRA 53 (79)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666665554444443333333
No 186
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=22.76 E-value=1.9e+02 Score=32.37 Aligned_cols=21 Identities=38% Similarity=0.398 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1953 149 VQSLTMHQKKLEAELQQIEEK 169 (379)
Q Consensus 149 VqsL~~eQeKLeaELqqlEee 169 (379)
+.+|..+.++++++++++..+
T Consensus 986 v~~L~~e~~~l~~~~~~~~ke 1006 (1080)
T 2dfs_A 986 VLSLQEEIAKLRKELHQTQTE 1006 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444433333
No 187
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=22.76 E-value=2.3e+02 Score=28.24 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1953 143 QVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVES 180 (379)
Q Consensus 143 q~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~ 180 (379)
..|...+.++..+.++|+.+++++.++..+.+.++.++
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 43 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQS 43 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777787778888888887777777666665554
No 188
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=22.60 E-value=2.8e+02 Score=21.73 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 145 LKRQVQSLTMHQKKLEAELQQIEEKF 170 (379)
Q Consensus 145 LkkQVqsL~~eQeKLeaELqqlEeef 170 (379)
+..|++.|..+..+|...++...-+.
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l 50 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQL 50 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34444444444444444444443333
No 189
>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}
Probab=22.59 E-value=2.1e+02 Score=20.31 Aligned_cols=35 Identities=17% Similarity=0.323 Sum_probs=26.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 137 VTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFE 171 (379)
Q Consensus 137 vt~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefq 171 (379)
+..++++.|.++|.+|+...+..-.+++.+-.|..
T Consensus 4 Vs~eeF~~L~rRVlqlE~~l~gI~S~idav~~Kl~ 38 (45)
T 4gif_A 4 VSGEEFYMLTRRVLQLETVLEGVVSQIDAVGSKLK 38 (45)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677899999999988887777777777665543
No 190
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=22.58 E-value=2.6e+02 Score=25.22 Aligned_cols=33 Identities=18% Similarity=0.366 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKK 174 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKK 174 (379)
+..+.++..+|..+...|..+++.+..++...+
T Consensus 51 L~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~ 83 (189)
T 2v71_A 51 LVQAEQRNRDLQADNQRLKYEVEALKEKLEHQY 83 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666666666666666666555444
No 191
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=22.52 E-value=3e+02 Score=21.99 Aligned_cols=24 Identities=13% Similarity=0.347 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhc
Q psy1953 166 IEEKFEAKKRKFVESSEQFQEELK 189 (379)
Q Consensus 166 lEeefqeKKrK~~E~sEkf~~ELK 189 (379)
...++..|.+.+..+.+++..|||
T Consensus 79 ~R~~~~~klr~Yk~dL~~lk~elk 102 (102)
T 2qyw_A 79 FRNPMMSKLRNYRKDLAKLHREVR 102 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcC
Confidence 345566677777777777777765
No 192
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=22.43 E-value=2.4e+02 Score=28.22 Aligned_cols=29 Identities=17% Similarity=0.061 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 143 QVLKRQVQSLTMHQKKLEAELQQIEEKFE 171 (379)
Q Consensus 143 q~LkkQVqsL~~eQeKLeaELqqlEeefq 171 (379)
+.+++.++.+..+.++++.++++.+++.+
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEAD 533 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Confidence 34444444444444444444444444443
No 193
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=22.41 E-value=1.9e+02 Score=24.13 Aligned_cols=62 Identities=11% Similarity=0.268 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---H------------HHHHHHHHHHHHHh-HHHHHHHhcC---CCCCchhhhhhh
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQ---I------------EEKFEAKKRKFVES-SEQFQEELKK---PGMGPEGYLNRL 202 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqq---l------------EeefqeKKrK~~E~-sEkf~~ELKK---~~vdeE~~~~~l 202 (379)
++.|..+++.|..+++.|..+|.. + +.-...--.+|-.. +++...++++ +.++.+++.+-|
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~~g~~~p~d~~LTp~qKea~I~s~~~~Lss~A~~KIe~kVr~~ta~~vTk~e~e~~L 89 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRESIIVSSSRALGAVAMRKIEAKVRSRAAKAVTEQELTSLL 89 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC---------CCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 778888999999999999888863 1 00011111122211 2455566666 788877776554
Q ss_pred c
Q psy1953 203 S 203 (379)
Q Consensus 203 ~ 203 (379)
+
T Consensus 90 ~ 90 (110)
T 2oa5_A 90 Q 90 (110)
T ss_dssp H
T ss_pred h
Confidence 4
No 194
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=21.73 E-value=3.4e+02 Score=22.42 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhH
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFE---AKKRKFVESS 181 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEeefq---eKKrK~~E~s 181 (379)
..+...+.++.+|..+...|+..++.++.++. .|.|.++-..
T Consensus 11 ~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLc 55 (106)
T 4e61_A 11 AELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILV 55 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666667777777777777777777776643 5555555543
No 195
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=21.67 E-value=3.1e+02 Score=23.82 Aligned_cols=16 Identities=25% Similarity=0.490 Sum_probs=9.3
Q ss_pred HHHHHhHHHHHHHhcC
Q psy1953 175 RKFVESSEQFQEELKK 190 (379)
Q Consensus 175 rK~~E~sEkf~~ELKK 190 (379)
+.|....|.+...|+.
T Consensus 99 Qqfl~~QedL~~DL~e 114 (141)
T 3okq_A 99 QQFLTLQEELILDLKE 114 (141)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555666666655
No 196
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=21.60 E-value=2.5e+02 Score=29.35 Aligned_cols=39 Identities=18% Similarity=0.274 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVES 180 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~ 180 (379)
-....++.+.|...+.+++..++..+..|++..+++.+.
T Consensus 496 ~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~k 534 (592)
T 1f5n_A 496 AESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEK 534 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555665555565555544433
No 197
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=21.17 E-value=2.5e+02 Score=23.30 Aligned_cols=45 Identities=11% Similarity=0.206 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~sEkf~~ELKK 190 (379)
+..+.+++.+...+..+|..++..++.... .++++-+...++|++
T Consensus 6 ~~al~~eL~~~~~ei~~L~~ei~eLk~~ve----~lEkERDFYF~KLRd 50 (106)
T 4e61_A 6 LVAIQAELTKSQETIGSLNEEIEQYKGTVS----TLEIEREFYFNKLRD 50 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 445555666666666666666655554433 344444566666665
No 198
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=21.17 E-value=22 Score=24.13 Aligned_cols=28 Identities=21% Similarity=0.496 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEK 169 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEee 169 (379)
++.++++++.|..+..+++.++..++.+
T Consensus 6 i~avKkKiq~lq~q~d~aee~~~~~~~~ 33 (37)
T 3azd_A 6 LEAVRRKIRSLQEQNYHLENEVARLKKL 33 (37)
T ss_dssp CHHHHHHHHHHHHHTTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888777777777777766654
No 199
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=21.16 E-value=4e+02 Score=23.25 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 145 LKRQVQSLTMHQKKLEAELQQIEEKF 170 (379)
Q Consensus 145 LkkQVqsL~~eQeKLeaELqqlEeef 170 (379)
..+.|..|.....+|+.+|.....++
T Consensus 96 AERsv~kLEk~id~lEd~L~~~Kek~ 121 (155)
T 2efr_A 96 AERSVTKLEKSIDDLEDELYAQKLKY 121 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444333333
No 200
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=21.07 E-value=1.8e+02 Score=26.26 Aligned_cols=33 Identities=12% Similarity=0.293 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 139 TNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFE 171 (379)
Q Consensus 139 ~dRiq~LkkQVqsL~~eQeKLeaELqqlEeefq 171 (379)
.+.+..|+.++..|..++++|..+.+++.++++
T Consensus 151 ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 151 LDTIAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466777788888888888888888777777653
No 201
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=20.96 E-value=2.3e+02 Score=23.07 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKF 177 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~ 177 (379)
++.|++++..+....++++..+..+.+.+..-...+
T Consensus 90 ~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l 125 (133)
T 1fxk_C 90 MESIKSQKNELESTLQKMGENLRAITDIMMKLSPQA 125 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777776666655444333
No 202
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=20.75 E-value=2.9e+02 Score=21.19 Aligned_cols=48 Identities=10% Similarity=0.108 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqeKKrK~~E~sEkf~~ELKK 190 (379)
.+.+..++..++.+..++..++.+...+|++.. .++-..|..++..++
T Consensus 7 ~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~Ll-niKl~Le~EIatYRk 54 (74)
T 2xv5_A 7 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELL-DIKLALDMEIHAYRK 54 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 456666666777777777777777666666443 343344555665555
No 203
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=20.68 E-value=3e+02 Score=21.35 Aligned_cols=31 Identities=13% Similarity=0.230 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEA 172 (379)
Q Consensus 142 iq~LkkQVqsL~~eQeKLeaELqqlEeefqe 172 (379)
++.+..++..+..+..++..++.+...+|++
T Consensus 30 l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~ 60 (86)
T 1x8y_A 30 RDTSRRLLAEKEREMAEMRARMQQQLDEYQE 60 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555543
No 204
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=20.58 E-value=79 Score=28.83 Aligned_cols=17 Identities=6% Similarity=0.208 Sum_probs=9.9
Q ss_pred CCHHHHHHHHHHHHhHH
Q psy1953 49 NSPQYLAYMAAKAKGKQ 65 (379)
Q Consensus 49 nSpay~ayi~aK~ra~~ 65 (379)
++-+|..-|.+...+..
T Consensus 55 ~~k~y~~ai~~~~~~q~ 71 (237)
T 4avm_A 55 DLKNFLSAVKVMHESSK 71 (237)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55566666666555444
No 205
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=20.35 E-value=2.3e+02 Score=19.83 Aligned_cols=23 Identities=43% Similarity=0.525 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 156 QKKLEAELQQIEEKFEAKKRKFV 178 (379)
Q Consensus 156 QeKLeaELqqlEeefqeKKrK~~ 178 (379)
..-|+.+|+.+|.+....|.++.
T Consensus 22 laaleselqalekklaalksklq 44 (48)
T 1g6u_A 22 LAALESELQALEKKLAALKSKLQ 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666555554443
No 206
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=20.13 E-value=2.4e+02 Score=21.49 Aligned_cols=16 Identities=25% Similarity=0.356 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1953 142 MQVLKRQVQSLTMHQK 157 (379)
Q Consensus 142 iq~LkkQVqsL~~eQe 157 (379)
|..|..+|.+|....+
T Consensus 31 i~~LE~~v~~le~~~~ 46 (70)
T 1gd2_E 31 LKALETQVVTLKELHS 46 (70)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444443333
No 207
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=20.12 E-value=3.5e+02 Score=21.90 Aligned_cols=29 Identities=10% Similarity=0.355 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1953 152 LTMHQKKLEAELQQIEEKFEAKKRKFVES 180 (379)
Q Consensus 152 L~~eQeKLeaELqqlEeefqeKKrK~~E~ 180 (379)
|..+..||.++|+++.......+..|...
T Consensus 54 L~Rk~DKl~~ele~l~~~l~~~k~~F~~~ 82 (93)
T 3sjb_C 54 NNRKLDSLDKEINNLKDEIQSENKAFQAH 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555554444433
No 208
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=20.11 E-value=2.8e+02 Score=21.74 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1953 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEK 169 (379)
Q Consensus 140 dRiq~LkkQVqsL~~eQeKLeaELqqlEee 169 (379)
.+++.|+..|.+|....+++.-+|+++.++
T Consensus 27 ~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~r 56 (83)
T 2xdj_A 27 QQLSDNQSDIDSLRGQIQENQYQLNQVVER 56 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555443
No 209
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=20.11 E-value=2.5e+02 Score=27.27 Aligned_cols=12 Identities=25% Similarity=0.645 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q psy1953 160 EAELQQIEEKFE 171 (379)
Q Consensus 160 eaELqqlEeefq 171 (379)
+++|..+++...
T Consensus 25 ~~~i~~L~~~l~ 36 (323)
T 1lwu_C 25 DAQIQELSEMWR 36 (323)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
Done!