Your job contains 1 sequence.
>psy1953
LNSCQFQNGTSRQLQANCYGQSIGGCSKIPQCNENNFSEYEKNLKAYHNSPQYLAYMAAK
AKGKQAQQAAEEREAQAQGFSGKNADRRIDIQPAEDEDEQEDGYSVKHVAYARYLRNHRL
INEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVES
SEQFQEELKKPGMGPEGYLNRLSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHP
PPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYP
THPYYGNAYPYPQHMNAGRPPHYPPHPGSQHPHQNCAHPETGQLVFQEGVLAKAMRLGYW
IILDELNLAPLPFLLYLLC
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy1953
(379 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0030093 - symbol:dalao "dalao" species:7227 "Droso... 447 1.1e-44 2
UNIPROTKB|F1NCC9 - symbol:SMARCE1 "Uncharacterized protei... 354 2.3e-32 1
UNIPROTKB|A5PKF6 - symbol:SMARCE1 "SMARCE1 protein" speci... 353 2.9e-32 1
UNIPROTKB|E2QX86 - symbol:SMARCE1 "Uncharacterized protei... 353 2.9e-32 1
UNIPROTKB|B4DFR4 - symbol:SMARCE1 "Smarce1 variant 5" spe... 353 2.9e-32 1
UNIPROTKB|B4DGM3 - symbol:SMARCE1 "cDNA FLJ55202, highly ... 353 2.9e-32 1
UNIPROTKB|Q969G3 - symbol:SMARCE1 "SWI/SNF-related matrix... 353 2.9e-32 1
MGI|MGI:1927347 - symbol:Smarce1 "SWI/SNF related, matrix... 353 2.9e-32 1
RGD|1304726 - symbol:Smarce1 "SWI/SNF related, matrix ass... 353 2.9e-32 1
WB|WBGene00022182 - symbol:swsn-3 species:6239 "Caenorhab... 183 1.1e-12 1
>FB|FBgn0030093 [details] [associations]
symbol:dalao "dalao" species:7227 "Drosophila melanogaster"
[GO:0003713 "transcription coactivator activity" evidence=IC]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0035060 "brahma complex" evidence=NAS;IDA;IPI]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IGI;IPI]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893 GO:GO:0006338
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0035060 HSSP:P07155 EMBL:AF348329 ProteinModelPortal:Q9BIW6
DIP:DIP-36731N IntAct:Q9BIW6 STRING:Q9BIW6 PRIDE:Q9BIW6
FlyBase:FBgn0030093 InParanoid:Q9BIW6 ArrayExpress:Q9BIW6
Bgee:Q9BIW6 Uniprot:Q9BIW6
Length = 749
Score = 447 (162.4 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
Identities = 95/163 (58%), Positives = 108/163 (66%)
Query: 39 EYEKNLKAYHNSPQYLAYMXXXXXXXXXXXXXXXXXXXXXGFSGKNADRRIDIQPAEDED 98
EYEK+LKAYH +P Y AYM G S +RRIDIQPAEDED
Sbjct: 148 EYEKSLKAYHQTPAYQAYMSAKSKVKTDVDMHETPSRG--GGSKSQHERRIDIQPAEDED 205
Query: 99 EQEDGYSVKHVAYARYLRNHRLINEIFXXXXXXXXXXXXTTNRMQVLKRQVQSLTMHQKK 158
+Q++GY+ KH+AYARYL NHRLINEIF TT RMQVLKRQV SLTMHQ K
Sbjct: 206 DQDEGYTTKHLAYARYLHNHRLINEIFSEAVVPDVRSVVTTTRMQVLKRQVSSLTMHQTK 265
Query: 159 LEAELQQIEEKFEAKKRKFVESSEQFQEELK---KPGMGPEGY 198
LEAELQQ+EEKFEAKK++ VESSE FQEELK KP + E +
Sbjct: 266 LEAELQQMEEKFEAKKQRMVESSEAFQEELKRHCKPAVDEETF 308
Score = 52 (23.4 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 310 PYPQHMNAGRPPHYPPHPG 328
P+ + N G PPH PP PG
Sbjct: 570 PHTGYANYGGPPHGPP-PG 587
Score = 51 (23.0 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
Identities = 17/39 (43%), Positives = 17/39 (43%)
Query: 310 PYPQHMNAGRPPH-YPPHPGSQHP---HQNCAHPETGQL 344
P PQH N G P H Y P GS P Q P G L
Sbjct: 635 PPPQH-N-GNPGHPYAPEHGSNPPPPQQQQQQQPPPGHL 671
Score = 50 (22.7 bits), Expect = 1.7e-44, Sum P(2) = 1.7e-44
Identities = 13/37 (35%), Positives = 14/37 (37%)
Query: 310 PYPQHMNA-GRPPHYP---PHPGSQHPHQNCAHPETG 342
P PQ PP P PHPG P + P G
Sbjct: 518 PLPQQQGGPAPPPGMPQMHPHPGHPPPGHSLMPPHMG 554
Score = 44 (20.5 bits), Expect = 7.4e-44, Sum P(2) = 7.4e-44
Identities = 13/43 (30%), Positives = 17/43 (39%)
Query: 309 YPYPQHMNAGR---PPHYPPH------PGSQHPHQNCAHPETG 342
+P+P H G PPH PH PG P + + G
Sbjct: 536 HPHPGHPPPGHSLMPPHMGPHQPPPGMPGLPPPPPHTGYANYG 578
Score = 43 (20.2 bits), Expect = 9.5e-44, Sum P(2) = 9.5e-44
Identities = 16/36 (44%), Positives = 17/36 (47%)
Query: 312 PQ-HMNAGRPP--H--YPPHPGSQHPHQNCAHPETG 342
PQ H + G PP H PPH G PHQ P G
Sbjct: 533 PQMHPHPGHPPPGHSLMPPHMG---PHQ----PPPG 561
>UNIPROTKB|F1NCC9 [details] [associations]
symbol:SMARCE1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006337 "nucleosome disassembly" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0008080
"N-acetyltransferase activity" evidence=IEA] [GO:0016514 "SWI/SNF
complex" evidence=IEA] [GO:0016922 "ligand-dependent nuclear
receptor binding" evidence=IEA] [GO:0017053 "transcriptional
repressor complex" evidence=IEA] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=IEA] [GO:0047485 "protein
N-terminus binding" evidence=IEA] [GO:0071564 "npBAF complex"
evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0017053 GO:GO:0045892
GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0008080 GO:GO:0006337 CTD:6605 KO:K11651 OMA:EDESIPM
GeneTree:ENSGT00390000003628 EMBL:AADN02068741 IPI:IPI00580760
RefSeq:NP_001006335.2 UniGene:Gga.6244 Ensembl:ENSGALT00000006174
GeneID:420047 KEGG:gga:420047 NextBio:20823013 Uniprot:F1NCC9
Length = 412
Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 74/152 (48%), Positives = 94/152 (61%)
Query: 39 EYEKNLKAYHNSPQYLAYMXXXXXXXXXXXXXXXXXXXXXGFSGKNADRRIDIQPAEDED 98
EY +++KAYHNSP YLAY+ + + + IQPAED D
Sbjct: 125 EYNESMKAYHNSPAYLAYINAKSRAEAALEEESRQRQSRM----EKGEPYMSIQPAEDPD 180
Query: 99 EQEDGYSVKHVAYARYLRNHRLINEIFXXXXXXXXXXXXTTNRMQVLKRQVQSLTMHQKK 158
+ +DG+S+KH A AR+ RNHRLI+EI TT RMQVLKRQVQSL +HQ+K
Sbjct: 181 DYDDGFSMKHTATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQRK 240
Query: 159 LEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190
LEAEL QIEE+ + KKRKF+ES+E F ELK+
Sbjct: 241 LEAELLQIEERHQEKKRKFLESTESFNNELKR 272
>UNIPROTKB|A5PKF6 [details] [associations]
symbol:SMARCE1 "SMARCE1 protein" species:9913 "Bos taurus"
[GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0017053 "transcriptional repressor
complex" evidence=IEA] [GO:0016922 "ligand-dependent nuclear
receptor binding" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008080 "N-acetyltransferase activity"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006337 "nucleosome disassembly" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0017053 GO:GO:0045892
GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0008080 GO:GO:0006337 CTD:6605 eggNOG:NOG291422
HOGENOM:HOG000230965 HOVERGEN:HBG054558 KO:K11651 OMA:EDESIPM
OrthoDB:EOG4229K4 GeneTree:ENSGT00390000003628 EMBL:DAAA02049142
EMBL:BC142470 IPI:IPI00854477 RefSeq:NP_001092586.1
UniGene:Bt.46178 STRING:A5PKF6 Ensembl:ENSBTAT00000020356
GeneID:540910 KEGG:bta:540910 InParanoid:A5PKF6 NextBio:20878909
Uniprot:A5PKF6
Length = 415
Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 76/167 (45%), Positives = 102/167 (61%)
Query: 39 EYEKNLKAYHNSPQYLAYMXXXXXXXXXXXXXXXXXXXXXGFSGKNADRRIDIQPAEDED 98
EY +++KAYHNSP YLAY+ + + + IQPAED D
Sbjct: 125 EYNESMKAYHNSPAYLAYINAKSRAEAALEEESRQRQSRM----EKGEPYMSIQPAEDPD 180
Query: 99 EQEDGYSVKHVAYARYLRNHRLINEIFXXXXXXXXXXXXTTNRMQVLKRQVQSLTMHQKK 158
+ +DG+S+KH A AR+ RNHRLI+EI TT RMQVLKRQVQSL +HQ+K
Sbjct: 181 DYDDGFSMKHTATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQRK 240
Query: 159 LEAELQQIEEKFEAKKRKFVESSEQFQEELKKP-GMGPEGYLNRLSA 204
LEAEL QIEE+ + KKRKF+ES++ F ELK+ G+ E + +++A
Sbjct: 241 LEAELLQIEERHQEKKRKFLESTDSFNNELKRLCGLKVEVDMEKIAA 287
>UNIPROTKB|E2QX86 [details] [associations]
symbol:SMARCE1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0071565 "nBAF complex" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0047485 "protein
N-terminus binding" evidence=IEA] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=IEA] [GO:0017053
"transcriptional repressor complex" evidence=IEA] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0008080
"N-acetyltransferase activity" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0006337 "nucleosome disassembly"
evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0017053
GO:GO:0045892 GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0008080 GO:GO:0006337 CTD:6605 KO:K11651
OMA:EDESIPM GeneTree:ENSGT00390000003628 EMBL:AAEX03006463
RefSeq:XP_862912.2 Ensembl:ENSCAFT00000025430 GeneID:608250
KEGG:cfa:608250 NextBio:20893916 Uniprot:E2QX86
Length = 393
Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 76/167 (45%), Positives = 102/167 (61%)
Query: 39 EYEKNLKAYHNSPQYLAYMXXXXXXXXXXXXXXXXXXXXXGFSGKNADRRIDIQPAEDED 98
EY +++KAYHNSP YLAY+ + + + IQPAED D
Sbjct: 107 EYNESMKAYHNSPAYLAYINAKSRAEAALEEESRQRQSRM----EKGEPYMSIQPAEDPD 162
Query: 99 EQEDGYSVKHVAYARYLRNHRLINEIFXXXXXXXXXXXXTTNRMQVLKRQVQSLTMHQKK 158
+ +DG+S+KH A AR+ RNHRLI+EI TT RMQVLKRQVQSL +HQ+K
Sbjct: 163 DYDDGFSMKHTATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQRK 222
Query: 159 LEAELQQIEEKFEAKKRKFVESSEQFQEELKKP-GMGPEGYLNRLSA 204
LEAEL QIEE+ + KKRKF+ES++ F ELK+ G+ E + +++A
Sbjct: 223 LEAELLQIEERHQEKKRKFLESTDSFNNELKRLCGLKVEVDMEKIAA 269
>UNIPROTKB|B4DFR4 [details] [associations]
symbol:SMARCE1 "Smarce1 variant 5" species:9606 "Homo
sapiens" [GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0071565 "nBAF complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
UniGene:Hs.740388 HGNC:HGNC:11109 HOVERGEN:HBG054558 EMBL:AC004585
EMBL:AC073508 EMBL:EU327019 EMBL:AK294218 IPI:IPI01015775
SMR:B4DFR4 STRING:B4DFR4 Ensembl:ENST00000544009
Ensembl:ENST00000578044 Uniprot:B4DFR4
Length = 341
Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 76/167 (45%), Positives = 102/167 (61%)
Query: 39 EYEKNLKAYHNSPQYLAYMXXXXXXXXXXXXXXXXXXXXXGFSGKNADRRIDIQPAEDED 98
EY +++KAYHNSP YLAY+ + + + IQPAED D
Sbjct: 55 EYNESMKAYHNSPAYLAYINAKSRAEAALEEESRQRQSRM----EKGEPYMSIQPAEDPD 110
Query: 99 EQEDGYSVKHVAYARYLRNHRLINEIFXXXXXXXXXXXXTTNRMQVLKRQVQSLTMHQKK 158
+ +DG+S+KH A AR+ RNHRLI+EI TT RMQVLKRQVQSL +HQ+K
Sbjct: 111 DYDDGFSMKHTATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQRK 170
Query: 159 LEAELQQIEEKFEAKKRKFVESSEQFQEELKKP-GMGPEGYLNRLSA 204
LEAEL QIEE+ + KKRKF+ES++ F ELK+ G+ E + +++A
Sbjct: 171 LEAELLQIEERHQEKKRKFLESTDSFNNELKRLCGLKVEVDMEKIAA 217
>UNIPROTKB|B4DGM3 [details] [associations]
symbol:SMARCE1 "cDNA FLJ55202, highly similar to
SWI/SNF-related matrix-associatedactin-dependent regulator of
chromatin subfamily E member 1" species:9606 "Homo sapiens"
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0071564 GO:GO:0016514 GO:GO:0071565 UniGene:Hs.740388
HGNC:HGNC:11109 HOVERGEN:HBG054558 OrthoDB:EOG4229K4 EMBL:AC004585
EMBL:AC073508 EMBL:AK294666 IPI:IPI01015411 SMR:B4DGM3
STRING:B4DGM3 Ensembl:ENST00000431889 Uniprot:B4DGM3
Length = 393
Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 76/167 (45%), Positives = 102/167 (61%)
Query: 39 EYEKNLKAYHNSPQYLAYMXXXXXXXXXXXXXXXXXXXXXGFSGKNADRRIDIQPAEDED 98
EY +++KAYHNSP YLAY+ + + + IQPAED D
Sbjct: 107 EYNESMKAYHNSPAYLAYINAKSRAEAALEEESRQRQSRM----EKGEPYMSIQPAEDPD 162
Query: 99 EQEDGYSVKHVAYARYLRNHRLINEIFXXXXXXXXXXXXTTNRMQVLKRQVQSLTMHQKK 158
+ +DG+S+KH A AR+ RNHRLI+EI TT RMQVLKRQVQSL +HQ+K
Sbjct: 163 DYDDGFSMKHTATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQRK 222
Query: 159 LEAELQQIEEKFEAKKRKFVESSEQFQEELKKP-GMGPEGYLNRLSA 204
LEAEL QIEE+ + KKRKF+ES++ F ELK+ G+ E + +++A
Sbjct: 223 LEAELLQIEERHQEKKRKFLESTDSFNNELKRLCGLKVEVDMEKIAA 269
>UNIPROTKB|Q969G3 [details] [associations]
symbol:SMARCE1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0047485 "protein N-terminus
binding" evidence=IPI] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0017053
"transcriptional repressor complex" evidence=IPI] [GO:0008080
"N-acetyltransferase activity" evidence=IDA] [GO:0016514 "SWI/SNF
complex" evidence=IDA] [GO:0071564 "npBAF complex" evidence=ISS]
[GO:0071565 "nBAF complex" evidence=ISS] [GO:0003682 "chromatin
binding" evidence=TAS] [GO:0000228 "nuclear chromosome"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0003713
"transcription coactivator activity" evidence=NAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=NAS] [GO:0006337 "nucleosome disassembly" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IDA] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR009071
PROSITE:PS00353 Pfam:PF00505 GO:GO:0017053 GO:GO:0045892
GO:GO:0007399 GO:GO:0003677 EMBL:CH471152 GO:GO:0006357
GO:GO:0003682 GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0003713 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 Pathway_Interaction_DB:ar_tf_pathway
GO:GO:0008080 GO:GO:0006337 GO:GO:0000228 EMBL:AF035262
EMBL:BT007176 EMBL:AK001532 EMBL:AK095047 EMBL:BC007082
EMBL:BC011017 EMBL:BC063700 IPI:IPI00017669 IPI:IPI01018063
RefSeq:NP_003070.3 UniGene:Hs.740388 ProteinModelPortal:Q969G3
SMR:Q969G3 DIP:DIP-27614N DIP:DIP-33041N IntAct:Q969G3
MINT:MINT-1137973 STRING:Q969G3 PhosphoSite:Q969G3 DMDM:61247587
PaxDb:Q969G3 PRIDE:Q969G3 DNASU:6605 Ensembl:ENST00000348513
GeneID:6605 KEGG:hsa:6605 UCSC:uc002hux.2 CTD:6605
GeneCards:GC17M038781 HGNC:HGNC:11109 HPA:HPA003916 MIM:603111
neXtProt:NX_Q969G3 PharmGKB:PA35959 eggNOG:NOG291422
HOGENOM:HOG000230965 HOVERGEN:HBG054558 InParanoid:Q969G3 KO:K11651
OMA:EDESIPM OrthoDB:EOG4229K4 GenomeRNAi:6605 NextBio:25703
ArrayExpress:Q969G3 Bgee:Q969G3 CleanEx:HS_SMARCE1
Genevestigator:Q969G3 GermOnline:ENSG00000073584 Uniprot:Q969G3
Length = 411
Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 76/167 (45%), Positives = 102/167 (61%)
Query: 39 EYEKNLKAYHNSPQYLAYMXXXXXXXXXXXXXXXXXXXXXGFSGKNADRRIDIQPAEDED 98
EY +++KAYHNSP YLAY+ + + + IQPAED D
Sbjct: 125 EYNESMKAYHNSPAYLAYINAKSRAEAALEEESRQRQSRM----EKGEPYMSIQPAEDPD 180
Query: 99 EQEDGYSVKHVAYARYLRNHRLINEIFXXXXXXXXXXXXTTNRMQVLKRQVQSLTMHQKK 158
+ +DG+S+KH A AR+ RNHRLI+EI TT RMQVLKRQVQSL +HQ+K
Sbjct: 181 DYDDGFSMKHTATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQRK 240
Query: 159 LEAELQQIEEKFEAKKRKFVESSEQFQEELKKP-GMGPEGYLNRLSA 204
LEAEL QIEE+ + KKRKF+ES++ F ELK+ G+ E + +++A
Sbjct: 241 LEAELLQIEERHQEKKRKFLESTDSFNNELKRLCGLKVEVDMEKIAA 287
>MGI|MGI:1927347 [details] [associations]
symbol:Smarce1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily e, member 1"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006337 "nucleosome
disassembly" evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISO] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0008080 "N-acetyltransferase activity"
evidence=ISO] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=ISO]
[GO:0017053 "transcriptional repressor complex" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0047485 "protein N-terminus binding"
evidence=ISO] [GO:0071564 "npBAF complex" evidence=IDA] [GO:0071565
"nBAF complex" evidence=IDA] InterPro:IPR009071 PROSITE:PS00353
MGI:MGI:1927347 Pfam:PF00505 GO:GO:0017053 GO:GO:0045892
GO:GO:0007399 GO:GO:0003677 GO:GO:0006338 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0008080 GO:GO:0006337 CTD:6605
eggNOG:NOG291422 HOGENOM:HOG000230965 HOVERGEN:HBG054558 KO:K11651
OMA:EDESIPM OrthoDB:EOG4229K4 EMBL:AF035263 EMBL:AK076177
EMBL:BC047141 EMBL:BC061498 EMBL:BC065043 IPI:IPI00119892
RefSeq:NP_065643.1 UniGene:Mm.379086 UniGene:Mm.389717
ProteinModelPortal:O54941 SMR:O54941 IntAct:O54941 STRING:O54941
PhosphoSite:O54941 PaxDb:O54941 PRIDE:O54941
Ensembl:ENSMUST00000103133 GeneID:57376 KEGG:mmu:57376
GeneTree:ENSGT00390000003628 InParanoid:O54941 ChiTaRS:SMARCE1
NextBio:313752 Bgee:O54941 Genevestigator:O54941
GermOnline:ENSMUSG00000037935 Uniprot:O54941
Length = 411
Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 76/167 (45%), Positives = 102/167 (61%)
Query: 39 EYEKNLKAYHNSPQYLAYMXXXXXXXXXXXXXXXXXXXXXGFSGKNADRRIDIQPAEDED 98
EY +++KAYHNSP YLAY+ + + + IQPAED D
Sbjct: 125 EYNESMKAYHNSPAYLAYINAKSRAEAALEEESRQRQSRM----EKGEPYMSIQPAEDPD 180
Query: 99 EQEDGYSVKHVAYARYLRNHRLINEIFXXXXXXXXXXXXTTNRMQVLKRQVQSLTMHQKK 158
+ +DG+S+KH A AR+ RNHRLI+EI TT RMQVLKRQVQSL +HQ+K
Sbjct: 181 DYDDGFSMKHTATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQRK 240
Query: 159 LEAELQQIEEKFEAKKRKFVESSEQFQEELKKP-GMGPEGYLNRLSA 204
LEAEL QIEE+ + KKRKF+ES++ F ELK+ G+ E + +++A
Sbjct: 241 LEAELLQIEERHQEKKRKFLESTDSFNNELKRLCGLKVEVDMEKIAA 287
>RGD|1304726 [details] [associations]
symbol:Smarce1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily e, member 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006337
"nucleosome disassembly" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0008080 "N-acetyltransferase activity"
evidence=ISO] [GO:0016514 "SWI/SNF complex" evidence=ISO]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=ISO]
[GO:0017053 "transcriptional repressor complex" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0047485 "protein N-terminus binding"
evidence=ISO] [GO:0071564 "npBAF complex" evidence=ISO] [GO:0071565
"nBAF complex" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 RGD:1304726
GO:GO:0005634 GO:GO:0007399 GO:GO:0003677 GO:GO:0016568
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
UniGene:Rn.10829 HOVERGEN:HBG054558 KO:K11651 EMBL:BC091314
EMBL:BC092210 EMBL:EU327027 EMBL:EU327028 EMBL:EU327029
EMBL:EU327030 EMBL:EU327031 IPI:IPI00370983 RefSeq:NP_001020164.1
UniGene:Rn.8513 ProteinModelPortal:Q56A18 STRING:Q56A18
GeneID:303518 KEGG:rno:303518 InParanoid:Q56A18 NextBio:651503
Genevestigator:Q56A18 Uniprot:Q56A18
Length = 376
Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 76/167 (45%), Positives = 102/167 (61%)
Query: 39 EYEKNLKAYHNSPQYLAYMXXXXXXXXXXXXXXXXXXXXXGFSGKNADRRIDIQPAEDED 98
EY +++KAYHNSP YLAY+ + + + IQPAED D
Sbjct: 90 EYNESMKAYHNSPAYLAYINAKSRAEAALEEESRQRQSRM----EKGEPYMSIQPAEDPD 145
Query: 99 EQEDGYSVKHVAYARYLRNHRLINEIFXXXXXXXXXXXXTTNRMQVLKRQVQSLTMHQKK 158
+ +DG+S+KH A AR+ RNHRLI+EI TT RMQVLKRQVQSL +HQ+K
Sbjct: 146 DYDDGFSMKHTATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQRK 205
Query: 159 LEAELQQIEEKFEAKKRKFVESSEQFQEELKKP-GMGPEGYLNRLSA 204
LEAEL QIEE+ + KKRKF+ES++ F ELK+ G+ E + +++A
Sbjct: 206 LEAELLQIEERHQEKKRKFLESTDSFNNELKRLCGLKVEVDMEKIAA 252
>WB|WBGene00022182 [details] [associations]
symbol:swsn-3 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0010171
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0040035 eggNOG:NOG291422 HOGENOM:HOG000230965 KO:K11651
GeneTree:ENSGT00390000003628 EMBL:FO081822 RefSeq:NP_497613.2
ProteinModelPortal:Q9BL39 SMR:Q9BL39 STRING:Q9BL39 PaxDb:Q9BL39
EnsemblMetazoa:Y71H2AM.17 GeneID:175393 KEGG:cel:CELE_Y71H2AM.17
UCSC:Y71H2AM.17 CTD:175393 WormBase:Y71H2AM.17 InParanoid:Q9BL39
OMA:IQPVDED NextBio:887970 Uniprot:Q9BL39
Length = 338
Score = 183 (69.5 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 40/100 (40%), Positives = 59/100 (59%)
Query: 91 IQPAEDEDEQEDGYSVKHVAYARYLRNHRLINEIFXXXXXXXXXXXXTTNRMQVLKRQVQ 150
IQP DED+ + S + +A R+ RN+RLI+++F +RM++LKRQ
Sbjct: 126 IQPV-DEDDGGNELSTRRLAGVRFERNNRLISDLFSPSIVTDTRTVVPHHRMEMLKRQAT 184
Query: 151 SLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190
SL HQ KLE EL ++E + +KR + S+ FQE+LKK
Sbjct: 185 SLGTHQSKLEEELTKLERAHDNRKRAIEKGSDDFQEQLKK 224
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.132 0.406 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 379 263 0.00091 114 3 11 22 0.37 34
32 0.49 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 10
No. of states in DFA: 608 (65 KB)
Total size of DFA: 211 KB (2117 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 27.78u 0.07s 27.85t Elapsed: 00:00:20
Total cpu time: 27.78u 0.07s 27.85t Elapsed: 00:00:22
Start: Thu Aug 15 10:49:36 2013 End: Thu Aug 15 10:49:58 2013