RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1953
(379 letters)
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 58.5 bits (141), Expect = 3e-09
Identities = 21/31 (67%), Positives = 26/31 (83%)
Query: 340 ETGQLVFQEGVLAKAMRLGYWIILDELNLAP 370
+ G L F+EGVL +A+R GYWI+LDELNLAP
Sbjct: 938 DDGSLSFKEGVLVEALRRGYWIVLDELNLAP 968
Score = 42.3 bits (99), Expect = 4e-04
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 345 VFQEGVLAKAMRLGYWIILDELNLAPLPFL 374
VF EG+L K MR G W++LDE+NLA L
Sbjct: 623 VFVEGILVKCMRNGEWLLLDEINLASEETL 652
Score = 41.9 bits (98), Expect = 6e-04
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 340 ETGQLVFQEGVLAKAMRLGYWIILDELNLA 369
E G+ + + AMR G W++LDE+NLA
Sbjct: 1594 EGGEFRWMDAPFLHAMRDGGWVLLDEINLA 1623
Score = 35.0 bits (80), Expect = 0.080
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 337 AHPETGQLVFQEGVLAKAMRLGYWIILDELNLAPLPFLLYLL 378
P+ G + +GVL +A+ G WI+ ++ AP L YLL
Sbjct: 196 TSPKPGDFEWMKGVLIEAVVSGDWILFKRIDKAPHGVLSYLL 237
Score = 31.1 bits (70), Expect = 1.1
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 344 LVFQEGVLAKAMRLGYWIILDELNLA 369
+++G L KAM+ G + +LDE++LA
Sbjct: 1280 FEWKDGPLVKAMKCGDFFLLDEISLA 1305
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1. Members
of this family are necessary for accurate chromosome
transmission during cell division.
Length = 804
Score = 52.1 bits (125), Expect = 3e-07
Identities = 37/186 (19%), Positives = 51/186 (27%), Gaps = 6/186 (3%)
Query: 164 QQIEEKFEAKKRKFVESSEQFQEELKKPGMGPEGYLNRLS-ASPVLTAPVSAQGPPPGPS 222
Q + + A+K +E E ++ ++ P+ L P A QGPP
Sbjct: 142 SQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPE--- 198
Query: 223 VPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQYPGASQP 282
PP + P P P P P P
Sbjct: 199 QPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPP 258
Query: 283 LAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHYPPHPGSQHPHQNCAHPETG 342
P+PP Q P PQ P P+P P PP P +
Sbjct: 259 -PPQPPQQQQQPPQPQAQPPP-QNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQR 316
Query: 343 QLVFQE 348
F+E
Sbjct: 317 GPQFRE 322
Score = 48.6 bits (116), Expect = 3e-06
Identities = 39/164 (23%), Positives = 43/164 (26%), Gaps = 22/164 (13%)
Query: 197 GYLNRLSASPVL--TAPVSAQGPPPGPSVPPMHGGQTGPV--------------ATVHHP 240
Y+ L P L TAP PP P P + P
Sbjct: 114 EYIPDLQPDPSLWGTAPKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLP 173
Query: 241 PPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPH-----GQYPYP 295
P Q +PP G P YP P Q P Q P P
Sbjct: 174 QPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLP 233
Query: 296 YPQYPTHPYYGNAYPYPQHMNAGRPPHYPPHPGSQHPHQNCAHP 339
PQ P P +P PP P Q P Q A P
Sbjct: 234 -PQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQP 276
Score = 45.1 bits (107), Expect = 4e-05
Identities = 33/141 (23%), Positives = 41/141 (29%), Gaps = 12/141 (8%)
Query: 192 GMGPEGYLNRLSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAML 251
P+G+ ++ L AP A PP P P Q P+ P SQ M
Sbjct: 204 PQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLP---QQPPPLQQPQFPGLSQQ----MP 256
Query: 252 PPHPRPGSPSGYPGAGGPYPPPQQYPGASQPL-----APRPPHGQYPYPYPQYPTHPYYG 306
PP P+P P PPPQ P L AP PP Q
Sbjct: 257 PPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQR 316
Query: 307 NAYPYPQHMNAGRPPHYPPHP 327
Q + +
Sbjct: 317 GPQFREQLVQLSQQQREALSQ 337
>gnl|CDD|177614 PHA03377, PHA03377, EBNA-3C; Provisional.
Length = 1000
Score = 51.2 bits (122), Expect = 5e-07
Identities = 34/140 (24%), Positives = 42/140 (30%), Gaps = 7/140 (5%)
Query: 202 LSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPS 261
LS P P S Q P G P Q P P P Q + P + S
Sbjct: 732 LSLHPDQAPPPSHQAPYSGHEEPQ---AQQAPYPGYWEPRPPQAPYLGYQEPQAQGVQVS 788
Query: 262 GYPGAGGPYPPPQQYPGASQPLAP---RPPHGQYPYPYPQYPTH-PYYGNAYPYPQHMNA 317
YPG GP+ Q+P A P HG P+ P H P +
Sbjct: 789 SYPGYAGPWGLRAQHPRYRHSWAYWSQYPGHGHPQGPWAPRPPHLPPQWDGSAGHGQDQV 848
Query: 318 GRPPHYPPHPGSQHPHQNCA 337
+ PH G +
Sbjct: 849 SQFPHLQSETGPPRLQLSQV 868
Score = 30.0 bits (67), Expect = 2.5
Identities = 36/137 (26%), Positives = 47/137 (34%), Gaps = 14/137 (10%)
Query: 215 QGPPPGPS-------VPPMHGGQTGPVATVHHPP--PSQGGHGAMLPPHPRPGSP---SG 262
Q PP PS +P + G+ P H P+Q P + P P S
Sbjct: 675 QSTPPRPSWLPSVFVLPSVDAGRAQPSEESHLSSMSPTQPISHEEQPRYEDPDDPLDLSL 734
Query: 263 YPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPH 322
+P P Y G +P A + P+ Y P P P PY G P Q + P
Sbjct: 735 HPDQAPPPSHQAPYSGHEEPQAQQAPYPGYWEPRP--PQAPYLGYQEPQAQGVQVSSYPG 792
Query: 323 YPPHPGSQHPHQNCAHP 339
Y G + H H
Sbjct: 793 YAGPWGLRAQHPRYRHS 809
>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional.
Length = 991
Score = 46.6 bits (110), Expect = 2e-05
Identities = 41/153 (26%), Positives = 51/153 (33%), Gaps = 6/153 (3%)
Query: 206 PVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPG 265
P+ AP + Q PP P+ PM P G PP PG
Sbjct: 686 PIQWAPGTMQPPPRAPT--PMRPPAAPPGRA----QRPAAATGRARPPAAAPGRARPPAA 739
Query: 266 AGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHYPP 325
A G PP PG ++P A P + P P PT A P PQ G P PP
Sbjct: 740 APGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPP 799
Query: 326 HPGSQHPHQNCAHPETGQLVFQEGVLAKAMRLG 358
Q GQ + +L + + G
Sbjct: 800 PQAGPTSMQLMPRAAPGQQGPTKQILRQLLTGG 832
Score = 39.7 bits (92), Expect = 0.003
Identities = 32/136 (23%), Positives = 38/136 (27%)
Query: 199 LNRLSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPG 258
+ L P+ + P P V T PS G MLP PG
Sbjct: 633 MRPLRMQPITFNVLVFPTPHQPPQVEITPYKPTWTQIGHIPYQPSPTGANTMLPIQWAPG 692
Query: 259 SPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAG 318
+ P A P PP PG +Q A + P P P P G
Sbjct: 693 TMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPG 752
Query: 319 RPPHYPPHPGSQHPHQ 334
R PG P
Sbjct: 753 RARPPAAAPGRARPPA 768
Score = 35.4 bits (81), Expect = 0.054
Identities = 27/106 (25%), Positives = 36/106 (33%), Gaps = 1/106 (0%)
Query: 189 KKPGMGPEGYLNRLSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHG 248
++P +A P +A G P+ P PP + G
Sbjct: 715 QRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAP 774
Query: 249 AMLPPHPRPGSPSGYP-GAGGPYPPPQQYPGASQPLAPRPPHGQYP 293
PP P +P P GA P PPPQ P + Q + P Q P
Sbjct: 775 TPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAPGQQGP 820
Score = 35.0 bits (80), Expect = 0.077
Identities = 34/109 (31%), Positives = 36/109 (33%), Gaps = 15/109 (13%)
Query: 204 ASPVLTAPVSAQGP--PPGPSVPPMH--GGQTGPVATVHHPPPSQGGHGAMLPPHPRPGS 259
P P AQ P G + PP G P A P G PP PG
Sbjct: 704 MRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGR 763
Query: 260 ---PSGYPGAGGPYP--PPQQYPGASQPLAPRPPHGQYPYPYPQYPTHP 303
P+ PGA P P PPQ P Q RP P P PQ
Sbjct: 764 ARPPAAAPGA--PTPQPPPQAPPAPQQ----RPRGAPTPQPPPQAGPTS 806
>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein;
Provisional.
Length = 617
Score = 44.0 bits (104), Expect = 9e-05
Identities = 32/159 (20%), Positives = 41/159 (25%), Gaps = 36/159 (22%)
Query: 208 LTAPVSAQGPPPGPSVPPMHG-------------GQTGPVATVHHPPPSQGGHGAMLPP- 253
+T SA P P P G GP A P + P
Sbjct: 86 ITVDPSAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPA 145
Query: 254 ------HPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYP----------YP 297
P PG+ +P A Y QQ G P P P
Sbjct: 146 YPAYQQRPEPGA---WPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRP 202
Query: 298 QYPTH--PYYGNAYPYPQHMNAGRPPHYPPHPGSQHPHQ 334
+Y Y + + R P PG+ H H+
Sbjct: 203 EYDQRRRDYDHPRPDWDRP-RRDRTDRPEPPPGAGHVHR 240
Score = 27.9 bits (62), Expect = 9.9
Identities = 28/101 (27%), Positives = 35/101 (34%), Gaps = 6/101 (5%)
Query: 204 ASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGY 263
ASP AP + P + P + + HP P P P +G+
Sbjct: 181 ASPASYAPEQERDREPYDAGRPEYDQRRRDY---DHPRPDWDRPRRDRTDRPEPPPGAGH 237
Query: 264 PGAGGPYPP--PQQYPGASQPLAPRPPHGQ-YPYPYPQYPT 301
GGP PP +P AP P Q P P P PT
Sbjct: 238 VHRGGPGPPERDDAPVVPIRPSAPGPLAAQPAPAPGPGEPT 278
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 43.4 bits (103), Expect = 1e-04
Identities = 25/142 (17%), Positives = 34/142 (23%), Gaps = 7/142 (4%)
Query: 191 PGMGPEGYLNRLSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAM 250
PG+ + + A P + G + P P P+ A
Sbjct: 645 PGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAP------AAPPPAPAPAAPAAPAGAAP 698
Query: 251 LPPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYP 310
P P P + A P P Q + +P P P P P G
Sbjct: 699 AQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDP-AGAPAQ 757
Query: 311 YPQHMNAGRPPHYPPHPGSQHP 332
P P P
Sbjct: 758 PPPPPAPAPAAAPAAAPPPSPP 779
Score = 42.3 bits (100), Expect = 4e-04
Identities = 18/93 (19%), Positives = 22/93 (23%)
Query: 209 TAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGG 268
A A P P + P A P P+ + G P A
Sbjct: 402 AAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAA 461
Query: 269 PYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPT 301
P P P A+ P P P
Sbjct: 462 PSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAP 494
Score = 41.1 bits (97), Expect = 0.001
Identities = 22/116 (18%), Positives = 24/116 (20%), Gaps = 8/116 (6%)
Query: 210 APVSAQGPPP-GPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGS--PSGYPGA 266
P A G P P P P P+Q P + P A
Sbjct: 669 WPAKAGGAAPAAPPPAPAPAAPAAPAG----AAPAQPAPAPAATPPAGQADDPAAQPPQA 724
Query: 267 GGPYPPPQQYPGASQPLAPRP-PHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPP 321
P PL P P Q P P A P
Sbjct: 725 AQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPS 780
Score = 39.6 bits (93), Expect = 0.003
Identities = 24/109 (22%), Positives = 25/109 (22%), Gaps = 3/109 (2%)
Query: 190 KPGMGPEGYLNRLSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGA 249
G EG S+ P A A P P G A P
Sbjct: 592 PGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPE 651
Query: 250 MLPPHPRPGSPSGYPGAGGPY---PPPQQYPGASQPLAPRPPHGQYPYP 295
P H S P P A P AP P G P
Sbjct: 652 HHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQ 700
Score = 38.8 bits (91), Expect = 0.004
Identities = 25/100 (25%), Positives = 27/100 (27%), Gaps = 2/100 (2%)
Query: 204 ASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGY 263
A A SA P + P A P + A P P
Sbjct: 391 AGAPAAAAPSAAAAAPAAAPAP--AAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNA 448
Query: 264 PGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHP 303
P G P PPP P A AP P P P P
Sbjct: 449 PAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAP 488
Score = 38.4 bits (90), Expect = 0.006
Identities = 28/153 (18%), Positives = 35/153 (22%), Gaps = 20/153 (13%)
Query: 203 SASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHH-----PPPSQGGHG--------A 249
A+P A + G P+ H P S GG G A
Sbjct: 618 PAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAA 677
Query: 250 MLPPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAY 309
P P P + AG P + P P P G +
Sbjct: 678 PAAPPPAPAPAAPAAPAGAAPAQPA----PAPAATPPAGQADDPAAQPPQAAQ---GASA 730
Query: 310 PYPQHMNAGRPPHYPPHPGSQHPHQNCAHPETG 342
P P + P P P P
Sbjct: 731 PSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPA 763
Score = 38.4 bits (90), Expect = 0.007
Identities = 20/86 (23%), Positives = 25/86 (29%), Gaps = 4/86 (4%)
Query: 203 SASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSG 262
+ +P AP +A P P + P P GG P P +PS
Sbjct: 409 APAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGG----APSPPPAAAPSA 464
Query: 263 YPGAGGPYPPPQQYPGASQPLAPRPP 288
P P A P A P
Sbjct: 465 QPAPAPAAAPEPTAAPAPAPPAAPAP 490
Score = 36.1 bits (84), Expect = 0.028
Identities = 25/105 (23%), Positives = 28/105 (26%), Gaps = 1/105 (0%)
Query: 228 GGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRP 287
GG A V P + GG G P P + P A P A AP
Sbjct: 579 GGDWQVEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAE 638
Query: 288 PHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHYPPHPGSQHP 332
P P P H A P G P + P
Sbjct: 639 ASAA-PAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPP 682
Score = 35.3 bits (82), Expect = 0.050
Identities = 17/73 (23%), Positives = 19/73 (26%), Gaps = 1/73 (1%)
Query: 210 APVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGP 269
AP A PP P G + P A P+ A P P A
Sbjct: 434 APAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAP-EPTAAPAPAPPAAPAPAA 492
Query: 270 YPPPQQYPGASQP 282
P P A
Sbjct: 493 APAAPAAPAAPAG 505
Score = 34.6 bits (80), Expect = 0.089
Identities = 20/91 (21%), Positives = 26/91 (28%), Gaps = 4/91 (4%)
Query: 204 ASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPG---SP 260
A+ AP +A P P P+ P G P P + P P P P
Sbjct: 418 AAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSA-QPAPAPAAAPEP 476
Query: 261 SGYPGAGGPYPPPQQYPGASQPLAPRPPHGQ 291
+ P P P A+ P
Sbjct: 477 TAAPAPAPPAAPAPAAAPAAPAAPAAPAGAD 507
Score = 34.6 bits (80), Expect = 0.099
Identities = 16/128 (12%), Positives = 21/128 (16%), Gaps = 1/128 (0%)
Query: 216 GPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQ 275
GP PG + P+ A G+ + A P
Sbjct: 589 GPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVA 648
Query: 276 YPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHYPPHPGSQHPHQN 335
P P +P P P A P
Sbjct: 649 APEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPA-APAAPAGAAPAQPAPAPAA 707
Query: 336 CAHPETGQ 343
Sbjct: 708 TPPAGQAD 715
Score = 34.6 bits (80), Expect = 0.10
Identities = 23/152 (15%), Positives = 28/152 (18%), Gaps = 17/152 (11%)
Query: 193 MGPEGYLNRLSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLP 252
G L RL V+ P + P P
Sbjct: 369 DDERGLLARLER-LERRLGVAGGAGAPAAAAPSAAAAAPAAAPA---------------P 412
Query: 253 PHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPT-HPYYGNAYPY 311
P + + A P P P P + P P A
Sbjct: 413 AAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAA 472
Query: 312 PQHMNAGRPPHYPPHPGSQHPHQNCAHPETGQ 343
A P P P A P
Sbjct: 473 APEPTAAPAPAPPAAPAPAAAPAAPAAPAAPA 504
Score = 33.0 bits (76), Expect = 0.27
Identities = 17/88 (19%), Positives = 20/88 (22%), Gaps = 2/88 (2%)
Query: 201 RLSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSP 260
A G S P P+ PP G A PP P P
Sbjct: 708 TPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPA 767
Query: 261 SGYPGAGGPYPPPQQYPGASQPLAPRPP 288
+ A P PP +
Sbjct: 768 AAPAAAPPPSPPSE--EEEMAEDDAPSM 793
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 43.4 bits (102), Expect = 2e-04
Identities = 31/133 (23%), Positives = 37/133 (27%), Gaps = 13/133 (9%)
Query: 202 LSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPS 261
P P + PP P GG P V PPS+ P +P +P+
Sbjct: 2827 PLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSR-------SPAAKPAAPA 2879
Query: 262 GYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPP 321
P P + S L P P P P P PQ PP
Sbjct: 2880 RPPVRRLARPAVSR-STESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQ-----PPP 2933
Query: 322 HYPPHPGSQHPHQ 334
PP P
Sbjct: 2934 PPPPRPQPPLAPT 2946
Score = 39.5 bits (92), Expect = 0.003
Identities = 33/129 (25%), Positives = 40/129 (31%), Gaps = 8/129 (6%)
Query: 190 KPGMGPEGYLNRLSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGA 249
KP + RL+ V + S PP P PP P PPP Q
Sbjct: 2874 KPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPP 2933
Query: 250 MLPPHPRP-----GSPSGYPGAGGPYPPPQQ---YPGASQPLAPRPPHGQYPYPYPQYPT 301
PP P+P P+G G P P PG R P P T
Sbjct: 2934 PPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASST 2993
Query: 302 HPYYGNAYP 310
P G++
Sbjct: 2994 PPLTGHSLS 3002
Score = 39.2 bits (91), Expect = 0.004
Identities = 26/108 (24%), Positives = 31/108 (28%), Gaps = 3/108 (2%)
Query: 217 PPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPP---HPRPGSPSGYPGAGGPYPPP 273
PP PV + P S+ LPP P + P P PPP
Sbjct: 2866 PPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPP 2925
Query: 274 QQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPP 321
P P PRP P P P P+ + GR
Sbjct: 2926 PPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVA 2973
Score = 38.8 bits (90), Expect = 0.005
Identities = 32/156 (20%), Positives = 44/156 (28%), Gaps = 10/156 (6%)
Query: 180 SSEQFQEELKKPGMGPEGYLNRLSASPVLTAP---VSAQGPPPGPSVPPMHGGQTGPVAT 236
S + + P P R +P + G S PP A
Sbjct: 2632 SPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQ--RPRRRAA- 2688
Query: 237 VHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPY 296
P+ G ++ P P P +P P A P P A++ +P P P
Sbjct: 2689 ----RPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAV 2744
Query: 297 PQYPTHPYYGNAYPYPQHMNAGRPPHYPPHPGSQHP 332
P P P P P P P + P
Sbjct: 2745 PAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPP 2780
Score = 34.5 bits (79), Expect = 0.10
Identities = 27/150 (18%), Positives = 36/150 (24%), Gaps = 14/150 (9%)
Query: 202 LSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPS 261
+A P AP +A P + P A + P+
Sbjct: 2762 TTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPA 2821
Query: 262 GYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQ----YPTHPYYGNAYPYPQHMNA 317
P P P ++QP AP PP G P P P
Sbjct: 2822 ASPAGPLPPPT------SAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKP 2875
Query: 318 GRPPHYP----PHPGSQHPHQNCAHPETGQ 343
P P P ++ A P
Sbjct: 2876 AAPARPPVRRLARPAVSRSTESFALPPDQP 2905
Score = 33.8 bits (77), Expect = 0.18
Identities = 38/148 (25%), Positives = 44/148 (29%), Gaps = 13/148 (8%)
Query: 204 ASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGS--PS 261
LT P A S+P P A V P + + P P P S P+
Sbjct: 2779 PPRRLTRPAVASLSESRESLPSPWDPADPPAA-VLAPAAALPPAASPAGPLPPPTSAQPT 2837
Query: 262 GYPGAGGPYPPPQQYPGASQPLAP---RPPHGQYPYPYPQYPTHPYYGN-AYPYPQHMNA 317
P GP PP G+ P RPP P P P P A P
Sbjct: 2838 APPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRS-PAAKPAAPARPPVRRLARPAVSRSTE 2896
Query: 318 GRP-----PHYPPHPGSQHPHQNCAHPE 340
P PP P + P Q P
Sbjct: 2897 SFALPPDQPERPPQPQAPPPPQPQPQPP 2924
Score = 33.8 bits (77), Expect = 0.19
Identities = 28/143 (19%), Positives = 37/143 (25%), Gaps = 7/143 (4%)
Query: 206 PVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPG 265
P +T+ PP + P G P P A PP P P + P
Sbjct: 2580 PAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPD 2639
Query: 266 AGGPY--PPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQH-----MNAG 318
P PPP++ P P + P + +
Sbjct: 2640 PHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLA 2699
Query: 319 RPPHYPPHPGSQHPHQNCAHPET 341
PP PP P A P
Sbjct: 2700 DPPPPPPTPEPAPHALVSATPLP 2722
Score = 33.8 bits (77), Expect = 0.19
Identities = 29/127 (22%), Positives = 33/127 (25%), Gaps = 5/127 (3%)
Query: 206 PVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPG 265
P A VSA PPGP+ Q P PP+ A RP P G
Sbjct: 2710 PAPHALVSATPLPPGPAA----ARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAG 2765
Query: 266 AGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHYPP 325
P PP RP P+ + A PP P
Sbjct: 2766 PPAP-APPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASP 2824
Query: 326 HPGSQHP 332
P
Sbjct: 2825 AGPLPPP 2831
Score = 33.0 bits (75), Expect = 0.30
Identities = 26/139 (18%), Positives = 33/139 (23%), Gaps = 14/139 (10%)
Query: 201 RLSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSP 260
R A+ +++ PP P P P P LPP P
Sbjct: 2684 RRRAARPTVGSLTSLADPPPPPPTP-------------EPAPHALVSATPLPPGPAAARQ 2730
Query: 261 SGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRP 320
+ P PP G + P P P P P P A P +
Sbjct: 2731 ASPALPAAPAPPAVP-AGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVA 2789
Query: 321 PHYPPHPGSQHPHQNCAHP 339
P P
Sbjct: 2790 SLSESRESLPSPWDPADPP 2808
Score = 32.6 bits (74), Expect = 0.41
Identities = 32/132 (24%), Positives = 39/132 (29%), Gaps = 2/132 (1%)
Query: 203 SASPVLTAPVSAQGPPPGPSVPPMHGGQTGPV--ATVHHPPPSQGGHGAMLPPHPRPGSP 260
+A A +A PP P+ P GG P T PP P R P
Sbjct: 2727 AARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRP 2786
Query: 261 SGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRP 320
+ + P + A P A P P P +A P G P
Sbjct: 2787 AVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPP 2846
Query: 321 PHYPPHPGSQHP 332
P P GS P
Sbjct: 2847 PPSLPLGGSVAP 2858
Score = 30.3 bits (68), Expect = 2.3
Identities = 39/165 (23%), Positives = 46/165 (27%), Gaps = 35/165 (21%)
Query: 210 APVSAQGPPPGPSVPPMHGGQTG---PVATVHHPPPSQ----------------GGHGAM 250
AP G PP P PP P V P + G
Sbjct: 2495 APDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPRMLTWIRGLEELASDDAGDPPPP 2554
Query: 251 LPPHPRPGSP--SGYPGAGGPYPP----------PQQYPGASQPLAPRPPHGQYPYPYPQ 298
LPP P +P S P P P P P +++P AP G P P
Sbjct: 2555 LPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPP 2614
Query: 299 YPTHPYYGNAYPYP----QHMNAGRPPHYPPHPGSQHPHQNCAHP 339
P P P P N P P P + P + A
Sbjct: 2615 SPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPG 2659
Score = 30.3 bits (68), Expect = 2.3
Identities = 24/88 (27%), Positives = 30/88 (34%), Gaps = 13/88 (14%)
Query: 201 RLSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSP 260
R +A+P P P VP P P+ A PP P P
Sbjct: 389 RHAATPFARGPGGDDQTRPAAPVP------------ASVPTPAPTPVPASAPPPPATPLP 436
Query: 261 SGYPGAG-GPYPPPQQYPGASQPLAPRP 287
S PG+ GP PPP++ P A
Sbjct: 437 SAEPGSDDGPAPPPERQPPAPATEPAPD 464
Score = 29.5 bits (66), Expect = 3.8
Identities = 28/118 (23%), Positives = 38/118 (32%), Gaps = 7/118 (5%)
Query: 235 ATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQYPGASQPL-APRPPHGQYP 293
+ H P G G P P+ P P P + PL + P P
Sbjct: 387 SARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGP 446
Query: 294 YPYPQ-YPTHPYYGNAYPYP-----QHMNAGRPPHYPPHPGSQHPHQNCAHPETGQLV 345
P P+ P P A P + ++A R P PG+ HP+T V
Sbjct: 447 APPPERQPPAPATEPAPDDPDDATRKALDALRERRPPEPPGADLAELLGRHPDTAGTV 504
Score = 28.4 bits (63), Expect = 9.4
Identities = 36/151 (23%), Positives = 43/151 (28%), Gaps = 5/151 (3%)
Query: 194 GPEGYLNRLSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPP 253
P L + V P P PS P + P A P P
Sbjct: 2550 DPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPR 2609
Query: 254 HPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQ 313
P P SP PPP P A++P PP P + P G +
Sbjct: 2610 GPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVP---PPERPRDDPAPGRVSRPRR 2666
Query: 314 HMNAGRPPHYPPHPGSQHPHQNCAHPETGQL 344
GR P Q P + A P G L
Sbjct: 2667 ARRLGRAAQASSPP--QRPRRRAARPTVGSL 2695
Score = 28.4 bits (63), Expect = 9.9
Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 1/86 (1%)
Query: 216 GPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQ 275
P P+ P+ P AT G PP +P +P+ P P ++
Sbjct: 413 ASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDATRK 472
Query: 276 YPGA-SQPLAPRPPHGQYPYPYPQYP 300
A + P PP ++P
Sbjct: 473 ALDALRERRPPEPPGADLAELLGRHP 498
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like. Vta1 (VPS20-associated protein 1) is
a positive regulator of Vps4. Vps4 is an ATPase that is
required in the multivesicular body (MVB) sorting
pathway to dissociate the endosomal sorting complex
required for transport (ESCRT). Vta1 promotes correct
assembly of Vps4 and stimulates its ATPase activity
through its conserved Vta1/SBP1/LIP5 region.
Length = 315
Score = 42.8 bits (101), Expect = 2e-04
Identities = 26/150 (17%), Positives = 36/150 (24%), Gaps = 3/150 (2%)
Query: 215 QGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQ 274
+G P P PP+ + S G A PS PG PP+
Sbjct: 144 EGEDPNPG-PPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPE 202
Query: 275 QYPGASQPLAPRPP--HGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHYPPHPGSQHP 332
S P P P P + P
Sbjct: 203 DPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPP 262
Query: 333 HQNCAHPETGQLVFQEGVLAKAMRLGYWII 362
+ G + + +AKA + W I
Sbjct: 263 SASATPAPIGGITLDDDAIAKAQKHAKWAI 292
Score = 39.3 bits (92), Expect = 0.002
Identities = 25/133 (18%), Positives = 27/133 (20%), Gaps = 7/133 (5%)
Query: 204 ASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPR-PGSPSG 262
P L S G P + PPS P P P SPS
Sbjct: 150 PGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSD 209
Query: 263 YPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPH 322
P P S P P P P + P PP
Sbjct: 210 SSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPT------PPS 263
Query: 323 YPPHPGSQHPHQN 335
P
Sbjct: 264 ASATPAPIGGITL 276
Score = 35.8 bits (83), Expect = 0.027
Identities = 27/111 (24%), Positives = 33/111 (29%), Gaps = 1/111 (0%)
Query: 186 EELKKPGMGPEGYLNRLSASPVLTAPVSAQGPPPG-PSVPPMHGGQTGPVATVHHPPPSQ 244
E+ + A P +P PG PS P + P + P PS
Sbjct: 159 EDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSS 218
Query: 245 GGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYP 295
P P +PS PG P PPP Q P PP
Sbjct: 219 FQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPA 269
Score = 33.9 bits (78), Expect = 0.13
Identities = 18/109 (16%), Positives = 23/109 (21%), Gaps = 1/109 (0%)
Query: 203 SASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSG 262
+ + S G P+ + P P + P S
Sbjct: 161 ADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQ 220
Query: 263 YPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYP-QYPTHPYYGNAYP 310
P P AP PP Q P PT P
Sbjct: 221 SDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPA 269
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional.
Length = 1355
Score = 42.4 bits (99), Expect = 3e-04
Identities = 33/121 (27%), Positives = 40/121 (33%), Gaps = 12/121 (9%)
Query: 220 GPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQYPGA 279
GP P PV P Q + P Y P P QY
Sbjct: 739 GPHEPLFTPI-VEPVQQPQQPVAPQQQYQQPQQPVA---PQPQYQQPQQPVAPQPQYQQP 794
Query: 280 SQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHYPPH-PGSQHPHQNCAH 338
QP+AP+P + Q PQ P P Y PQ A +P + P P + P H
Sbjct: 795 QQPVAPQPQYQQ-----PQQPVAPQ--PQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLH 847
Query: 339 P 339
P
Sbjct: 848 P 848
Score = 36.2 bits (83), Expect = 0.031
Identities = 28/136 (20%), Positives = 32/136 (23%), Gaps = 12/136 (8%)
Query: 195 PEGYLNRLSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPH 254
PEGY P P V P P A P
Sbjct: 377 PEGY----PQQSQYAQPAVQYNEPLQQPVQP-QQPYYAPAAEQPAQQPYYAPAPEQPAQQ 431
Query: 255 PRPGSPSGYPGAGGPY-PPPQQYPGASQPLA------PRPPHGQYPYPYPQYPTHPYYGN 307
P P AG + QQ A Q +P + Y PQ
Sbjct: 432 PYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVE 491
Query: 308 AYPYPQHMNAGRPPHY 323
P + RPP Y
Sbjct: 492 PEPVVEETKPARPPLY 507
Score = 35.8 bits (82), Expect = 0.041
Identities = 26/134 (19%), Positives = 30/134 (22%), Gaps = 11/134 (8%)
Query: 211 PVSAQGPPPGPSVPPMHGG-QTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGP 269
PV+ P VPP PV P P + P+
Sbjct: 339 PVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPA------VQ 392
Query: 270 YPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYP---QHMNAGRPPHYPPH 326
Y P Q P Q P Q P Y P PY
Sbjct: 393 YNEPLQQPVQPQQPYYAPAAEQPAQQ-PYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEE 451
Query: 327 PGSQHPHQNCAHPE 340
S Q+ E
Sbjct: 452 QQSTFAPQSTYQTE 465
Score = 33.1 bits (75), Expect = 0.27
Identities = 34/127 (26%), Positives = 38/127 (29%), Gaps = 9/127 (7%)
Query: 206 PVLTAPVSAQGPPPGPSVPPMHGGQTG-PVATVHHPPPSQGGHGAMLPPHPRPGSPSGYP 264
P+ T V P P P Q PVA P P + P P+ P
Sbjct: 743 PLFTPIVEPVQQPQQPVAPQQQYQQPQQPVA----PQPQYQQPQQPVAPQPQYQQPQQPV 798
Query: 265 GAGGPYPPPQQ----YPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRP 320
Y PQQ P QP P P QY P P +P RP
Sbjct: 799 APQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRP 858
Query: 321 PHYPPHP 327
H P P
Sbjct: 859 LHKPTTP 865
Score = 33.1 bits (75), Expect = 0.31
Identities = 21/126 (16%), Positives = 27/126 (21%), Gaps = 8/126 (6%)
Query: 211 PVSAQGP---PPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAG 267
PV A P P P+ P A P +P+ A
Sbjct: 371 PVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQ 430
Query: 268 GPYPPPQ-QYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHYPPH 326
PY P + P A + Y A P + P
Sbjct: 431 QPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQ----QPQPVEQ 486
Query: 327 PGSQHP 332
P
Sbjct: 487 QPVVEP 492
>gnl|CDD|146815 pfam04368, DUF507, Protein of unknown function (DUF507). Bacterial
protein of unknown function.
Length = 183
Score = 38.8 bits (91), Expect = 0.001
Identities = 26/143 (18%), Positives = 61/143 (42%), Gaps = 29/143 (20%)
Query: 65 QAQQAAEER--EAQAQGFSGKNADRRIDIQPAEDED---EQEDGYSVKHVAYARYLRNHR 119
+A++ EE E + + I + A++ ED Y+ ++ H+
Sbjct: 55 RAREILEENEEEIEFMNVDRRQLFWMIKKKLADEFGFILGYEDRYN--DIS-------HQ 105
Query: 120 LINEIFSDSVVPDVRSVVTTNRMQ-VLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFV 178
++ ++ + V+ NR++ + ++ +++E E + EK + KRK +
Sbjct: 106 ILELLWKS---DLIEYYVSDNRIKNKIFSSIKEYLKIYEEIEDE---VREKIKNYKRKLI 159
Query: 179 ESSEQF--------QEELKKPGM 193
+E++ +EEL+K G+
Sbjct: 160 PGTEEYDLVFEKLYEEELRKRGL 182
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 40.1 bits (94), Expect = 0.002
Identities = 36/202 (17%), Positives = 80/202 (39%), Gaps = 45/202 (22%)
Query: 64 KQAQQAAEEREAQAQGFSGKNADRRIDIQPAEDEDEQEDGYSVKHVAYARYLRN-HRLIN 122
K+ ++ EE E + + + A+ + +I+ + E+ + K L +
Sbjct: 880 KELEEEKEELEEELRELESELAELKEEIEKLRERLEELE---AKLERLEVELPELEEELE 936
Query: 123 EIFSDSVVPDVRSVVTTNRMQVLKRQ------VQSLTMHQ--------KKLEAELQQIEE 168
E + D++ ++ ++ L+ + V + + ++L+++ + +EE
Sbjct: 937 EEYEDTLETELE-----REIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEE 991
Query: 169 ----------KFEAKKR-KFVES----SEQFQEELKKPGMGPEGYLNRLSASPVLTAPV- 212
+ + +KR +F E+ +E F E K+ G L LTA +
Sbjct: 992 AKEKLLEVIEELDKEKRERFKETFDKINENFSEIFKELFGGGTAELELTEPDDPLTAGIE 1051
Query: 213 -SAQGPPPGPSVPPMH---GGQ 230
SA+ PPG + + GG+
Sbjct: 1052 ISAR--PPGKKLQSLSLLSGGE 1071
Score = 33.9 bits (78), Expect = 0.15
Identities = 11/51 (21%), Positives = 29/51 (56%)
Query: 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190
N ++ LKR+++SL ++L L+ ++E+ + + + E + +E ++
Sbjct: 397 NELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEE 447
Score = 30.8 bits (70), Expect = 1.5
Identities = 11/78 (14%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 109 VAYARYLRNHRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEE 168
+ A+ + + E+ + + + ++ L+ +++ ++L++EL+++ E
Sbjct: 229 LLLAKLKELRKELEELEEE-----LSRLEE--ELEELQEELEEAEKEIEELKSELEELRE 281
Query: 169 KFEAKKRKFVESSEQFQE 186
+ E + + +E E+ +E
Sbjct: 282 ELEELQEELLELKEEIEE 299
>gnl|CDD|219404 pfam07415, Herpes_LMP2, Gammaherpesvirus latent membrane protein
(LMP2) protein. This family consists of several
Gammaherpesvirus latent membrane protein (LMP2)
proteins. Epstein-Barr virus is a human Gammaherpesvirus
that infects and establishes latency in B lymphocytes in
vivo. The latent membrane protein 2 (LMP2) gene is
expressed in latently infected B cells and encodes two
protein isoforms, LMP2A and LMP2B, that are identical
except for an additional N-terminal 119 aa cytoplasmic
domain which is present in the LMP2A isoform. LMP2A is
thought to play a key role in either the establishment
or the maintenance of latency and/or the reactivation of
productive infection from the latent state. The
significance of LMP2B and its role in pathogenesis
remain unclear.
Length = 489
Score = 39.8 bits (93), Expect = 0.002
Identities = 27/116 (23%), Positives = 30/116 (25%), Gaps = 31/116 (26%)
Query: 250 MLPPHPRP-GSPSGYPGAGGPYPP-----PQQYPGASQPLAPRPPHGQYPYPYPQYPTHP 303
+ PR G P G G PY P PG P P + P PY
Sbjct: 9 LGAGGPRSHGGPDGDEGDSNPYYPSSFGSSWDRPGPPVPEDYDAPSHR-PPPYGG----S 63
Query: 304 YYGNAYPY-------PQHM--------NAGRPPHYPPHP-GSQH----PHQNCAHP 339
Y P PP Y P GS+H P P
Sbjct: 64 NGDRHGGYQPLGQQDPSLYAGLGQNGGGGLPPPPYSPRDQGSEHVYEEPRDARMVP 119
>gnl|CDD|218350 pfam04959, ARS2, Arsenite-resistance protein 2. Arsenite is a
carcinogenic compound which can act as a co-mutagen by
inhibiting DNA repair. Arsenite-resistance protein 2 is
thought to play a role in arsenite resistance.
Length = 211
Score = 38.6 bits (90), Expect = 0.003
Identities = 21/78 (26%), Positives = 25/78 (32%), Gaps = 7/78 (8%)
Query: 251 LPPHPRPGSPSGYPGAGG-PYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAY 309
P+P PG G P PQ QP RPP Y P +P + Y G
Sbjct: 132 PLQPPKPDPGGLAPGLPGYPPQTPQALMPYGQP---RPPMMGYGRGGPPFPPNQYGGGRG 188
Query: 310 PYPQHMNAGRPPHYPPHP 327
Y + Y P
Sbjct: 189 NYDEFR---GQGGYYGKP 203
Score = 32.5 bits (74), Expect = 0.21
Identities = 22/81 (27%), Positives = 24/81 (29%), Gaps = 9/81 (11%)
Query: 217 PPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQY 276
PP P GG + P M PRP GY G P+PP Q
Sbjct: 134 QPPKPD----PGGLAPGLPGYPPQTP----QALMPYGQPRPPMM-GYGRGGPPFPPNQYG 184
Query: 277 PGASQPLAPRPPHGQYPYPYP 297
G R G Y P
Sbjct: 185 GGRGNYDEFRGQGGYYGKPRN 205
Score = 28.6 bits (64), Expect = 4.2
Identities = 15/59 (25%), Positives = 18/59 (30%), Gaps = 4/59 (6%)
Query: 269 PYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHYPPHP 327
P P Q P YP PQ PY P + G P +PP+
Sbjct: 128 PEIKPLQPPKPDPGGLAPGL-PGYPPQTPQALM-PYGQPRPPMMGYGRGG--PPFPPNQ 182
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 39.3 bits (92), Expect = 0.003
Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 16/86 (18%)
Query: 119 RLINEIFSDSVVPDVRSVV------------TTNRMQVLKRQVQSLTMHQKKLEAELQQI 166
R INEI S +P++R + ++ L+++++SL ++KLE +++++
Sbjct: 207 REINEI--SSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIREL 264
Query: 167 EEKFEAKKRKFVESSEQFQE--ELKK 190
EE+ E K++ E E+ +E ELK+
Sbjct: 265 EERIEELKKEIEELEEKVKELKELKE 290
>gnl|CDD|190741 pfam03763, Remorin_C, Remorin, C-terminal region. Remorins are
plant-specific plasma membrane-associated proteins. In
tobacco remorin co-purifies with lipid rafts. Most
remorins have a variable, proline-rich C-half and a more
conserved N-half that is predicted to form coiled coils.
Consistent with this, circular dichroism studies have
demonstrated that much of the protein is alpha-helical.
Remorins exist in plasma membrane preparations as
oligomeric structures and form filaments in vitro. The
proteins can bind polyanions including the extracellular
matrix component oligogalacturonic acid (OGA). In vitro,
remorin in plasma membrane preparations is
phosphorylated (principally on threonine residues) in
the presence of OGA and thus co-purifies with a protein
kinases(s). The biological functions of remorins are
unknown but roles as components of the
membrane/cytoskeleton are possible.
Length = 112
Score = 36.2 bits (84), Expect = 0.004
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 140 NRMQVLKRQVQSLTMHQK-KLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190
N+ Q + ++Q+ +K K EAEL++IE K E KK+ E++E+ + +L
Sbjct: 23 NKYQREEAKIQAWENKKKAKAEAELKKIERKLE-KKKA--EAAEKLKNKLAA 71
>gnl|CDD|220098 pfam09057, Smac_DIABLO, Second Mitochondria-derived Activator of
Caspases. Second Mitochondria-derived Activator of
Caspases promotes apoptosis by activating caspases in
the cytochrome c/Apaf-1/caspase-9 pathway, and by
opposing the inhibitory activity of inhibitor of
apoptosis proteins (XIAP-BIR3). The protein assumes an
elongated three-helix bundle structure, and forms a
dimer in solution.
Length = 234
Score = 38.0 bits (88), Expect = 0.005
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 132 DVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKKP 191
D SV N +QV + QV+ + Q EAE + E K E +R +S EL+
Sbjct: 169 DQASVAARNHLQVAQSQVEEV--RQLSKEAEKKLAESKAEEIQRMAEYASSIDLSELEDI 226
Query: 192 GMGPEGYL 199
PE YL
Sbjct: 227 ---PEAYL 231
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 38.5 bits (90), Expect = 0.006
Identities = 20/129 (15%), Positives = 51/129 (39%), Gaps = 4/129 (3%)
Query: 64 KQAQQAAEEREAQAQGFSGKNADRRIDIQPAEDEDEQEDGYSVKHVAYARYLRNH-RLIN 122
+QA++A +E +A+ + + + + E+ E+ + + L +
Sbjct: 207 RQAEKAERYKELKAEL---RELELALLVLRLEELREELEELQEELKEAEEELEELTAELQ 263
Query: 123 EIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSE 182
E+ + ++ L++++ +L +LE + Q + E+ +R+ E
Sbjct: 264 ELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEA 323
Query: 183 QFQEELKKP 191
Q +E K
Sbjct: 324 QLEELESKL 332
Score = 32.7 bits (75), Expect = 0.32
Identities = 29/154 (18%), Positives = 57/154 (37%), Gaps = 33/154 (21%)
Query: 58 AAKAKGKQAQQAAEEREAQAQGFSGKNADR-------RIDIQPAEDEDEQEDGYSVKHVA 110
+A+ ++ + EE E Q + K A +I+ E E+ +
Sbjct: 362 ELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLED------- 414
Query: 111 YARYLRNHRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKF 170
R RL EI ++ + ++ L+ +++ L ++ ELQ+ E+
Sbjct: 415 -----RRERLQQEI------EELLKKLEEAELKELQAELEEL----EEELEELQEELERL 459
Query: 171 EAKKRKFVESSEQFQEELKKPGMGPEGYLNRLSA 204
E + E E+ ++ L E L +L A
Sbjct: 460 EEALEELREELEEAEQALDA----AERELAQLQA 489
Score = 31.6 bits (72), Expect = 0.79
Identities = 21/130 (16%), Positives = 50/130 (38%), Gaps = 15/130 (11%)
Query: 61 AKGKQAQQAAEEREAQAQGFSGKNADRRIDIQPAEDEDEQEDGYSVKHVAYARYLRNHRL 120
+ + + E +EA+ + + ++ + E E +
Sbjct: 237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANE 296
Query: 121 INEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVES 180
I+ + + Q+L+ ++ +L ++LEA+L+++E K + + E
Sbjct: 297 ISRL--------------EQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAEL 342
Query: 181 SEQFQEELKK 190
E+ EELK+
Sbjct: 343 EEKL-EELKE 351
Score = 30.4 bits (69), Expect = 1.8
Identities = 21/141 (14%), Positives = 52/141 (36%), Gaps = 19/141 (13%)
Query: 64 KQAQQAAEEREAQAQGFSGKNADRRIDIQPAEDE-DEQEDGYSVKHVAYARYLRNHRLIN 122
+ ++ EE + + + + I+ E E + + + A L L
Sbjct: 841 EDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEA--LALLRSELEE 898
Query: 123 EIFSDSVVPDVRSVVTTNR--MQVLKRQVQSLTMHQKKLEAELQQIEEKF---------- 170
+ ++ S + R ++ L+ ++ L + + LE + ++E+
Sbjct: 899 L---SEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEE 955
Query: 171 -EAKKRKFVESSEQFQEELKK 190
EA + K + E+ + LK+
Sbjct: 956 AEALENKIEDDEEEARRRLKR 976
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 38.6 bits (90), Expect = 0.006
Identities = 24/137 (17%), Positives = 32/137 (23%), Gaps = 4/137 (2%)
Query: 194 GPEGYLNRLSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPP 253
G +G L +S S L A G P G GP ++
Sbjct: 38 GSQGQL--VSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTL 95
Query: 254 HPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHG-QYPYPYPQYPTHPYYGNAYPYP 312
P + G P GP P P P +P P + A P
Sbjct: 96 APASPAREGSPTPPGPSSPDPP-PPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPA 154
Query: 313 QHMNAGRPPHYPPHPGS 329
+
Sbjct: 155 AGASPAAVASDAASSRQ 171
Score = 32.5 bits (74), Expect = 0.51
Identities = 31/146 (21%), Positives = 36/146 (24%), Gaps = 14/146 (9%)
Query: 191 PGMGPEGYLNRLSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAM 250
PG G E N ++P + A P GP + PP A
Sbjct: 73 PGPGTEAPANESRSTPTWSLSTLAPASPA----REGSPTPPGPSSP---DPPPPTPPPAS 125
Query: 251 LPPHPRPGSPSGYPGAGGPYPPPQQYP-------GASQPLAPRPPHGQYPYPYPQYPTHP 303
PP P P G P PPP P A A P P+
Sbjct: 126 PPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARA 185
Query: 304 YYGNAYPYPQHMNAGRPPHYPPHPGS 329
P PP S
Sbjct: 186 PSSPPAEPPPSTPPAAASPRPPRRSS 211
Score = 31.7 bits (72), Expect = 0.82
Identities = 17/93 (18%), Positives = 26/93 (27%), Gaps = 3/93 (3%)
Query: 210 APVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGA-GG 268
+ + P P PS P + P A+ + + + PG
Sbjct: 289 SSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPS 348
Query: 269 PYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPT 301
P P + P + P P P P P
Sbjct: 349 RSPSPSRPPPPADP--SSPRKRPRPSRAPSSPA 379
Score = 30.5 bits (69), Expect = 1.8
Identities = 22/99 (22%), Positives = 29/99 (29%), Gaps = 15/99 (15%)
Query: 203 SASPVLTAPVSAQGPPP--------GPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPH 254
S+ P +A+ PP P+ P P
Sbjct: 832 SSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARP-----GAA 886
Query: 255 PRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYP 293
P + + P AG P P P+ P L P PP G P
Sbjct: 887 APPKAAAAAPPAGAPAPRPR--PAPRVKLGPMPPGGPDP 923
Score = 30.1 bits (68), Expect = 2.6
Identities = 21/114 (18%), Positives = 30/114 (26%), Gaps = 1/114 (0%)
Query: 209 TAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGG 268
T P ++ P P P + M P PP+ G A + + P +
Sbjct: 120 TPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSP 179
Query: 269 PYP-PPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPP 321
P A P + P P P + P P A
Sbjct: 180 EETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAG 233
Score = 29.8 bits (67), Expect = 2.9
Identities = 16/147 (10%), Positives = 24/147 (16%), Gaps = 9/147 (6%)
Query: 204 ASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGY 263
A +L +G P V + A R
Sbjct: 771 ALALLEPAEPQRGAGSSPPVRAEAAFRRPGRL----RRSGPAADAASRTASKRKSRSHTP 826
Query: 264 PGAGGPYPPPQQYPGASQPLAPR-----PPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAG 318
G P + A++P R + A
Sbjct: 827 DGGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAA 886
Query: 319 RPPHYPPHPGSQHPHQNCAHPETGQLV 345
PP P +
Sbjct: 887 APPKAAAAAPPAGAPAPRPRPAPRVKL 913
>gnl|CDD|219934 pfam08614, ATG16, Autophagy protein 16 (ATG16). Autophagy is a
ubiquitous intracellular degradation system for
eukaryotic cells. During autophagy, cytoplasmic
components are enclosed in autophagosomes and delivered
to lysosomes/vacuoles. ATG16 (also known as Apg16) has
been shown to be bind to Apg5 and is required for the
function of the Apg12p-Apg5p conjugate in the yeast
autophagy pathway.
Length = 194
Score = 37.1 bits (86), Expect = 0.007
Identities = 28/160 (17%), Positives = 55/160 (34%), Gaps = 25/160 (15%)
Query: 33 NENNFSEYEKNLKAYHNSPQYLAYMAAKAKGKQAQQAAEEREAQAQGFSGKNADRRIDIQ 92
E FSE + Q A QA + + + S D
Sbjct: 15 REKAFSEL------FEQYRQLADRTRLLKVENDALQAEKYEQQSSHSSSPSADGPGSDAA 68
Query: 93 PAEDEDE----QEDGYSVKHVAYARYLRNHRLINEIFSDSVVPDVRSVVTTNRMQVLKRQ 148
AE E + +E+ + + + + + +D + R +Q L++
Sbjct: 69 IAEMEQKLAKLREELTE----LHKKRGELAQRLLLL-NDELEQLRR------EIQQLEKT 117
Query: 149 VQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEEL 188
+ L LE E++ + E+ + K++ +E Q+EL
Sbjct: 118 IAELRSEITSLETEIRDLREELQEKEK----DNETLQDEL 153
>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 38.0 bits (88), Expect = 0.008
Identities = 18/82 (21%), Positives = 24/82 (29%), Gaps = 7/82 (8%)
Query: 202 LSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVA----TVHHPPPSQGGHGAMLPPHPRP 257
++ SP + V + P P P H G P A P P+ PP R
Sbjct: 380 VAPSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARS 439
Query: 258 GSPSGYPGAGGPYPPPQQYPGA 279
P + P G
Sbjct: 440 AP---LPPSPQASAPRNVASGK 458
Score = 29.1 bits (65), Expect = 4.7
Identities = 15/73 (20%), Positives = 19/73 (26%), Gaps = 2/73 (2%)
Query: 240 PPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQY 299
P P+ P P P +PG P P + P + P Q P
Sbjct: 382 PSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARS-- 439
Query: 300 PTHPYYGNAYPYP 312
P A
Sbjct: 440 APLPPSPQASAPR 452
>gnl|CDD|184281 PRK13729, PRK13729, conjugal transfer pilus assembly protein TraB;
Provisional.
Length = 475
Score = 37.5 bits (87), Expect = 0.009
Identities = 35/167 (20%), Positives = 54/167 (32%), Gaps = 26/167 (15%)
Query: 130 VPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELK 189
VPD+ VV T T K + +++ ++++ E+ + EL
Sbjct: 51 VPDMTGVVDT-------------TFDDKVRQHATTEMQVTAAQMQKQY----EEIRRELD 93
Query: 190 KPGMGPEGYLNRLSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGA 249
R+ A ++ Q G + P G+ PV + PP G
Sbjct: 94 VLNKQRGDDQRRIEKLGQDNAALAEQVKALGAN-PVTATGE--PVPQMPASPPGPEGE-- 148
Query: 250 MLPPHPRPGSPSGYPGAGGPYPPPQQ-YPGASQPLAPRPPHGQYPYP 295
P P S P PPP YPG P+ + P P
Sbjct: 149 ---PQPGNTPVSFPPQGSVAVPPPTAFYPGNGVTPPPQVTYQSVPVP 192
Score = 30.9 bits (70), Expect = 1.2
Identities = 20/74 (27%), Positives = 22/74 (29%), Gaps = 10/74 (13%)
Query: 253 PHPRPGSPSGYPGAGGPYPPPQQY--PGASQPLAPRPPHGQYPYPYPQ--YPTHPYYGNA 308
P + +G P P PP P PP G P P YP GN
Sbjct: 123 LGANPVTATGEPVPQMPASPPGPEGEPQPGNTPVSFPPQGSVAVPPPTAFYP-----GNG 177
Query: 309 Y-PYPQHMNAGRPP 321
P PQ P
Sbjct: 178 VTPPPQVTYQSVPV 191
Score = 29.4 bits (66), Expect = 3.9
Identities = 20/104 (19%), Positives = 35/104 (33%)
Query: 141 RMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKKPGMGPEGYLN 200
+ VL +Q +KL + + E+ +A V ++ + ++ GPEG
Sbjct: 91 ELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGANPVTATGEPVPQMPASPPGPEGEPQ 150
Query: 201 RLSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQ 244
+ S PPP P V P P++
Sbjct: 151 PGNTPVSFPPQGSVAVPPPTAFYPGNGVTPPPQVTYQSVPVPNR 194
>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein.
Length = 753
Score = 37.1 bits (86), Expect = 0.015
Identities = 26/111 (23%), Positives = 30/111 (27%), Gaps = 9/111 (8%)
Query: 195 PEGYLNRLSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPP--PSQGGHGAMLP 252
+ L R + A PGP M P P P+ P
Sbjct: 639 FKTALPRPDYNRGGEAGGPGV---PGPVPVGMPAHTARPSRVARGDPVRPTAHHAALRAP 695
Query: 253 PHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHP 303
PRPG P G G P P A+ AP P P P
Sbjct: 696 QAPRPGGPPGGGGGLPPPPD----LPAAAGPAPCGSSLIASPTAPPEPEPP 742
Score = 34.4 bits (79), Expect = 0.094
Identities = 26/99 (26%), Positives = 31/99 (31%), Gaps = 7/99 (7%)
Query: 194 GPEGYLNRLSASPVLTAPVS--AQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAML 251
GP P TA S A+G P P+ H P A P GG G L
Sbjct: 656 GPGVPGPVPVGMPAHTARPSRVARGDPVRPT--AHHAALRAPQA--PRPGGPPGGGGG-L 710
Query: 252 PPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHG 290
PP P + +G G P +P G
Sbjct: 711 PPPPDLPAAAGPAPCGSSLIASPTAPPEPEPPGAEQADG 749
Score = 28.2 bits (63), Expect = 7.7
Identities = 14/56 (25%), Positives = 14/56 (25%), Gaps = 3/56 (5%)
Query: 217 PPPGPSVPPMHGGQTGPVAT---VHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGP 269
P P PP GG P P P A P P P G
Sbjct: 696 QAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEPPGAEQADGAE 751
>gnl|CDD|220964 pfam11068, DUF2869, Protein of unknown function (DUF2869). This
bacterial family of proteins has no known function.
Length = 131
Score = 34.9 bits (81), Expect = 0.018
Identities = 14/76 (18%), Positives = 34/76 (44%), Gaps = 19/76 (25%)
Query: 133 VRSVVT-----------TNRMQVLKRQVQSLTMHQKKLEAE--------LQQIEEKFEAK 173
V+ +VT ++ L++++Q L +K E ++QI+++ E +
Sbjct: 9 VKQIVTERWKEELQAELQEQLTQLEQELQQLEFQGQKAIKEIRKQSAQQIEQIQQQVEQE 68
Query: 174 KRKFVESSEQFQEELK 189
+ K +E Q +++
Sbjct: 69 RAKRLEQKNQLLFQIE 84
>gnl|CDD|219805 pfam08347, CTNNB1_binding, N-terminal CTNNB1 binding. This region
tends to appear at the N-terminus of proteins also
containing DNA-binding HMG (high mobility group) boxes
(pfam00505) and appears to bind the armadillo repeat of
CTNNB1 (beta-catenin), forming a stable complex.
Signaling by Wnt through TCF/LCF is involved in
developmental patterning, induction of neural tissues,
cell fate decisions and stem cell differentiation.
Isoforms of HMG T-cell factors lacking the N-terminal
CTNNB1-binding domain cannot fulfill their role as
transcriptional activators in T-cell differentiation.
Length = 200
Score = 35.6 bits (82), Expect = 0.019
Identities = 43/175 (24%), Positives = 50/175 (28%), Gaps = 31/175 (17%)
Query: 185 QEELKKPGMGPEGYLNRL----------SASPVLTAPVSAQGPPPGPSVPPMHGGQTGPV 234
QEE +G E L + S S A PP S + V
Sbjct: 27 QEEKISENVGAERDLADVKSSLVNESESSESSSSEAISRRDHPPRYESYRDKSREKLEDV 86
Query: 235 ATVHH------PPPSQGGHGAMLP-PHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRP 287
+ H PP G MLP P+ GS S P P Q P PL P
Sbjct: 87 SHKHQDMGYYKGPPYSGYPFLMLPNPYLPNGSLSPLPP-SSNKVPVVQPPHHVHPLTPLI 145
Query: 288 PHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHYP---------PHPGSQHPH 333
+ + P H Y RPPH P P Q PH
Sbjct: 146 TYSNEHFSPGTPPPHL----PYDVDPKTGIPRPPHPPDISPFYPLSPGGVGQIPH 196
Score = 27.6 bits (61), Expect = 8.9
Identities = 18/93 (19%), Positives = 20/93 (21%), Gaps = 1/93 (1%)
Query: 207 VLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGA 266
+L P G P VH P P P
Sbjct: 108 MLPNPYLPNGSLSPLPPSSNKVPVVQPPHHVHPLTPLITYSNEHFSPGTPPPHLPYDVDP 167
Query: 267 GGPYPPPQQYPGASQPLAPRP-PHGQYPYPYPQ 298
P P P S P GQ P+P
Sbjct: 168 KTGIPRPPHPPDISPFYPLSPGGVGQIPHPLGW 200
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 618
Score = 36.2 bits (84), Expect = 0.027
Identities = 33/168 (19%), Positives = 37/168 (22%), Gaps = 15/168 (8%)
Query: 190 KPGMGPEGYLNRLSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGA 249
KP E +P A A P P A P+
Sbjct: 365 KPAAAAEAAAPAEKKTP---ARPEAAAPAAAPVAQA-------AAAPAPAAAPAAAASAP 414
Query: 250 MLPPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAY 309
PP P +P P A P P P A P P A
Sbjct: 415 AAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVAS 474
Query: 310 PYPQHMNAGRPPHYPPHPGSQHPHQNCAHPETGQLVFQEGVLAKAMRL 357
P A P H QL E + A A L
Sbjct: 475 AAPAPAAAPAAARLTPTEEGDVWHATVQ-----QLAAAEAITALAREL 517
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 700
Score = 36.4 bits (84), Expect = 0.028
Identities = 32/147 (21%), Positives = 38/147 (25%), Gaps = 12/147 (8%)
Query: 201 RLSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHP----- 255
+A+PV +A P P + A P P
Sbjct: 376 TAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAA 435
Query: 256 -RPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQH 314
R S G GA P P P P A+ A P P P
Sbjct: 436 ARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRP----VAAAAAAAPARAAPAAAPAP 491
Query: 315 MNAGRPP--HYPPHPGSQHPHQNCAHP 339
+ PP PP S P Q A P
Sbjct: 492 ADDDPPPWEELPPEFASPAPAQPDAAP 518
Score = 34.9 bits (80), Expect = 0.080
Identities = 22/119 (18%), Positives = 25/119 (21%), Gaps = 4/119 (3%)
Query: 210 APVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPG---A 266
AP A P + P G A P A P P P +
Sbjct: 449 APAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFAS 508
Query: 267 GGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHYPP 325
P P G P P + P A P PP
Sbjct: 509 PAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPA-PRAAAATEPVVAPRPP 566
Score = 31.4 bits (71), Expect = 0.83
Identities = 24/110 (21%), Positives = 27/110 (24%), Gaps = 9/110 (8%)
Query: 224 PPMHGGQTGPVATVHHP-----PPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQYPG 278
P GG GP P P + A P P +P+ P A P
Sbjct: 365 PGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPA 424
Query: 279 ASQP-LAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHYPPHP 327
P Q P P P A RP P P
Sbjct: 425 RRSPAPEALAAARQASARGPGGAPAP---APAPAAAPAAAARPAAAGPRP 471
Score = 30.6 bits (69), Expect = 1.7
Identities = 16/95 (16%), Positives = 23/95 (24%)
Query: 203 SASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSG 262
+A+P A +A GP P + + P A + P P
Sbjct: 455 AAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQP 514
Query: 263 YPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYP 297
G P + P P P
Sbjct: 515 DAAPAGWVAESIPDPATADPDDAFETLAPAPAAAP 549
Score = 30.2 bits (68), Expect = 2.2
Identities = 14/93 (15%), Positives = 18/93 (19%)
Query: 209 TAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGG 268
P +A P P A P A +P+ A
Sbjct: 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPE 431
Query: 269 PYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPT 301
+Q AP P P
Sbjct: 432 ALAAARQASARGPGGAPAPAPAPAAAPAAAARP 464
Score = 29.5 bits (66), Expect = 4.0
Identities = 24/145 (16%), Positives = 30/145 (20%), Gaps = 17/145 (11%)
Query: 204 ASPVLTAPVSAQGPPPGPSVPPMH-------------GGQTGPVATVHHPPPSQGGHGAM 250
A+P A A P P GG P P+ A
Sbjct: 408 AAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPA-AAPAAAARPAA 466
Query: 251 LPPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPY---PQYPTHPYYGN 307
P P + + P P P P PP P P
Sbjct: 467 AGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESI 526
Query: 308 AYPYPQHMNAGRPPHYPPHPGSQHP 332
P + P + P
Sbjct: 527 PDPATADPDDAFETLAPAPAAAPAP 551
Score = 28.7 bits (64), Expect = 6.0
Identities = 28/138 (20%), Positives = 37/138 (26%), Gaps = 15/138 (10%)
Query: 195 PEGYLNRLSASPVLTAPVSAQGPPPGPSVPPMHGG-----QTGPVATVHHPPPSQGGHGA 249
P +A P + P + P A S G G
Sbjct: 387 PAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGG 446
Query: 250 MLPPHPRPGS---PSGYPGAGGPYPPP---QQYPGASQPLAPRPPHGQYPYPYPQYPTHP 303
P P P + + P A GP P P + P A P P P+ + P
Sbjct: 447 APAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEF 506
Query: 304 YYGNAYPYPQHMNAGRPP 321
A P P +A
Sbjct: 507 ----ASPAPAQPDAAPAG 520
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. This family contains a P-loop motif
suggesting it is a nucleotide binding protein. It may be
involved in replication.
Length = 1198
Score = 36.2 bits (84), Expect = 0.031
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 141 RMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQ 185
R+Q + +QS QK+ E +L Q + E +KR E+ +
Sbjct: 608 RLQQAEEALQSAVAKQKQAEEQLVQANAELEEQKRAEAEARTALK 652
Score = 31.2 bits (71), Expect = 1.2
Identities = 8/51 (15%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 139 TNRMQVLKRQVQ-SLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEEL 188
N Q LK +++ ++ +++ E +L+Q++ + + + E +++
Sbjct: 662 QNEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEALKDDF 712
Score = 30.4 bits (69), Expect = 1.8
Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 25/135 (18%)
Query: 55 AYMAAKAKGKQAQQAAEEREAQAQGFSGKNADRRIDIQPAEDEDEQEDGYSVKHVAYARY 114
A +A AK KQA++ + A+ + A+ R ++ A + +
Sbjct: 615 ALQSAVAKQKQAEEQLVQANAELEEQKRAEAEARTALKQARLD--------------LQR 660
Query: 115 LRNHRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKK 174
L+N + S+ D + R Q + Q++ L K+L + Q EA K
Sbjct: 661 LQNEQ-------QSLK-DKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFL---EALK 709
Query: 175 RKFVESSEQFQEELK 189
F E + + +
Sbjct: 710 DDFRELRTERLAKWQ 724
>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau;
Validated.
Length = 598
Score = 35.3 bits (82), Expect = 0.047
Identities = 20/95 (21%), Positives = 26/95 (27%), Gaps = 17/95 (17%)
Query: 194 GPEGYLNRLSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPP 253
P+ L RL P +P G PPG P P+
Sbjct: 379 TPDEALRRLQEGP--PSPGGGGGGPPGGGGAP--------------GAPAAAAAPGAAAA 422
Query: 254 HPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPP 288
P G P+ A P + AP+P
Sbjct: 423 APAAGGPAA-ALAAVPDAAAAAAAPPAPAAAPQPA 456
Score = 32.6 bits (75), Expect = 0.41
Identities = 17/63 (26%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Query: 240 PPPSQGGHGAMLPPHPR-PGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQ 298
P GG P PG+ + P AGGP P A+ A P P P +
Sbjct: 399 GGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPAAAPQPAVR 458
Query: 299 YPT 301
+
Sbjct: 459 LNS 461
Score = 31.8 bits (73), Expect = 0.67
Identities = 13/67 (19%), Positives = 14/67 (20%)
Query: 244 QGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHP 303
Q G + P G PGA P A P P P
Sbjct: 388 QEGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPP 447
Query: 304 YYGNAYP 310
A
Sbjct: 448 APAAAPQ 454
Score = 29.9 bits (68), Expect = 2.8
Identities = 14/64 (21%), Positives = 15/64 (23%), Gaps = 2/64 (3%)
Query: 240 PPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQY 299
P P GG G P A G G + LA P P
Sbjct: 392 PSPGGGGGGP--PGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAP 449
Query: 300 PTHP 303
P
Sbjct: 450 AAAP 453
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 35.4 bits (81), Expect = 0.049
Identities = 30/121 (24%), Positives = 39/121 (32%), Gaps = 3/121 (2%)
Query: 215 QGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQ 274
QGPP P + P T G P P+P PS P PQ
Sbjct: 176 QGPPSIQVPPGAALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHPQ 235
Query: 275 QYPGASQPLAPRPPHG---QYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHYPPHPGSQH 331
+ P PL P+ Q P P ++P ++G P P + G P
Sbjct: 236 RLPSPHPPLQPQTASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHPSSNPPQ 295
Query: 332 P 332
P
Sbjct: 296 P 296
Score = 34.3 bits (78), Expect = 0.12
Identities = 33/134 (24%), Positives = 41/134 (30%), Gaps = 6/134 (4%)
Query: 203 SASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSG 262
A P +P++AQ P P P P + P HP H + P SP
Sbjct: 201 QAVPPQGSPIAAQ-PAPQPQQPSPLSLISAPSL---HPQRLPSPHPPLQPQTASQQSPQP 256
Query: 263 YPGAGGPYPPPQQYPGASQP--LAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRP 320
+ PG P L P Q+P P P P P A
Sbjct: 257 PAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHPSSNPPQPFGLAQSQVPPLPLPSQAQPH 316
Query: 321 PHYPPHPGSQHPHQ 334
H PP + P Q
Sbjct: 317 SHTPPSQSALQPQQ 330
Score = 34.3 bits (78), Expect = 0.13
Identities = 42/169 (24%), Positives = 52/169 (30%), Gaps = 28/169 (16%)
Query: 203 SASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVH---HPPPSQGGHGAMLPPHPRPG- 258
S P + Q GP P H Q GPV H +PP G + +PP P P
Sbjct: 253 SPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHPSSNPPQPFGLAQSQVPPLPLPSQ 312
Query: 259 -----SPSGYPGAGGPYPPPQQYPGASQPLAPR-------------------PPHGQYPY 294
A P PP++ P P P PPH Q P
Sbjct: 313 AQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIKPPPTTPIPQLPNQSHKHPPHLQGPS 372
Query: 295 PYPQYPTHPYYGNAYPYPQHMNAGRPPHYPPHPGSQHPHQNCAHPETGQ 343
P+PQ P++ A + PP P P P Q
Sbjct: 373 PFPQMPSNLPPPPALKPLSSLPTHHPPSAHPPPLQLMPQSQPLQSVPAQ 421
Score = 33.9 bits (77), Expect = 0.17
Identities = 33/142 (23%), Positives = 45/142 (31%), Gaps = 14/142 (9%)
Query: 201 RLSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPS-----QGGHGAMLPPHP 255
RL + P +A P P P P ++ H P P Q G + P
Sbjct: 236 RLPSPHPPLQPQTASQQSPQPPAPS----SRHPQSSHHGPGPPMPHALQQGPVFLQHPSS 291
Query: 256 RPGSPSGYPGAGGPYP--PPQQYPGASQPLAPRPPHGQYP---YPYPQYPTHPYYGNAYP 310
P P G + P P Q P + P + Q P P P P+ P+
Sbjct: 292 NPPQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIKPPPT 351
Query: 311 YPQHMNAGRPPHYPPHPGSQHP 332
P + +PPH P
Sbjct: 352 TPIPQLPNQSHKHPPHLQGPSP 373
Score = 31.6 bits (71), Expect = 0.75
Identities = 33/132 (25%), Positives = 43/132 (32%), Gaps = 9/132 (6%)
Query: 215 QGPPPGPSVPPMHGGQ---TGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYP 271
+ P P P + P Q P + HP S G G +P + G + P
Sbjct: 236 RLPSPHPPLQPQTASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHPSSNPPQ 295
Query: 272 P----PQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHYPPHP 327
P Q P P +P P P P P M +PP P P
Sbjct: 296 PFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIKPP--PTTP 353
Query: 328 GSQHPHQNCAHP 339
Q P+Q+ HP
Sbjct: 354 IPQLPNQSHKHP 365
Score = 31.6 bits (71), Expect = 0.94
Identities = 31/136 (22%), Positives = 39/136 (28%), Gaps = 6/136 (4%)
Query: 206 PVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPR-PGSPSGYP 264
P+ P S P + Q+ P H P S G P + P + G P
Sbjct: 405 PLQLMPQSQPLQSVPAQPPVLTQSQSLPPKASTH-PHSGLHSGPPQSPFAQHPFTSGGLP 463
Query: 265 GAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHYP 324
G PP P ++ PR G P + G P P P
Sbjct: 464 AIG----PPPSLPTSTPAAPPRASSGSQPPGSALPSSGGCAGPGPPLPPIQIKEEPLDEA 519
Query: 325 PHPGSQHPHQNCAHPE 340
P S P PE
Sbjct: 520 EEPESPPPPPRSPSPE 535
>gnl|CDD|153271 cd07307, BAR, The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization
module that binds membranes and detects membrane
curvature. BAR domains are dimerization, lipid binding
and curvature sensing modules found in many different
proteins with diverse functions including organelle
biogenesis, membrane trafficking or remodeling, and cell
division and migration. Mutations in BAR containing
proteins have been linked to diseases and their
inactivation in cells leads to altered membrane
dynamics. A BAR domain with an additional N-terminal
amphipathic helix (an N-BAR) can drive membrane
curvature. These N-BAR domains are found in amphiphysins
and endophilins, among others. BAR domains are also
frequently found alongside domains that determine lipid
specificity, such as the Pleckstrin Homology (PH) and
Phox Homology (PX) domains which are present in beta
centaurins (ACAPs and ASAPs) and sorting nexins,
respectively. A FES-CIP4 Homology (FCH) domain together
with a coiled coil region is called the F-BAR domain and
is present in Pombe/Cdc15 homology (PCH) family
proteins, which include Fes/Fes tyrosine kinases, PACSIN
or syndapin, CIP4-like proteins, and srGAPs, among
others. The Inverse (I)-BAR or IRSp53/MIM homology
Domain (IMD) is found in multi-domain proteins, such as
IRSp53 and MIM, that act as scaffolding proteins and
transducers of a variety of signaling pathways that link
membrane dynamics and the underlying actin cytoskeleton.
BAR domains form dimers that bind to membranes, induce
membrane bending and curvature, and may also be involved
in protein-protein interactions. The I-BAR domain
induces membrane protrusions in the opposite direction
compared to classical BAR and F-BAR domains, which
produce membrane invaginations. BAR domains that also
serve as protein interaction domains include those of
arfaptin and OPHN1-like proteins, among others, which
bind to Rac and Rho GAP domains, respectively.
Length = 194
Score = 34.0 bits (78), Expect = 0.073
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 154 MHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190
+KK ++L + EE+ + K K+ E E+ E+L K
Sbjct: 121 RKKKKDSSKLAEAEEELQEAKEKYEELREELIEDLNK 157
>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 624
Score = 34.3 bits (78), Expect = 0.10
Identities = 26/103 (25%), Positives = 33/103 (32%), Gaps = 13/103 (12%)
Query: 228 GGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRP 287
GG + P+ GG + P G G G P P ++ P P P
Sbjct: 375 GGGASAPSGSAAEGPASGGAATIPTP--------GTQGPQGTAPAAGMTPSSAAPATPAP 426
Query: 288 PHGQYP-YPYPQYPTHPYYGNAYPYPQHMNAGRPPHYPPHPGS 329
P P+ P P P P A R P P PG+
Sbjct: 427 SAAPSPRVPWDDAPPAPPRSGIPPRP----APRMPEASPVPGA 465
>gnl|CDD|222449 pfam13908, Shisa, Wnt and FGF inhibitory regulator. Shisa is a
transcription factor-type molecule that physically
interacts with immature forms of the Wnt receptor
Frizzled and the FGF receptor within the endoplasmic
reticulum to inhibit their post-translational maturation
and trafficking to the cell surface.
Length = 177
Score = 33.3 bits (76), Expect = 0.11
Identities = 22/54 (40%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Query: 253 PHPRPGS-PSGYPGAGGPYPPPQQY-PGASQPLAPRPPHG-QYPYPYPQYPTHP 303
P P+P S YPG P Q Y P QP P PP+ QYP P P P
Sbjct: 126 PLPQPPSTAPSYPG-----PQYQGYHPMPPQPGMPAPPYSLQYPPPGLLQPQGP 174
Score = 30.2 bits (68), Expect = 1.2
Identities = 12/36 (33%), Positives = 14/36 (38%)
Query: 191 PGMGPEGYLNRLSASPVLTAPVSAQGPPPGPSVPPM 226
PG +GY + P S Q PPPG P
Sbjct: 138 PGPQYQGYHPMPPQPGMPAPPYSLQYPPPGLLQPQG 173
Score = 29.4 bits (66), Expect = 2.0
Identities = 20/72 (27%), Positives = 25/72 (34%), Gaps = 5/72 (6%)
Query: 200 NRLSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGS 259
R + + V P PS P + GP +HP P Q G PP+
Sbjct: 110 QRPVMTRATSTTVQTTPLPQPPSTAPSY---PGPQYQGYHPMPPQP--GMPAPPYSLQYP 164
Query: 260 PSGYPGAGGPYP 271
P G GP P
Sbjct: 165 PPGLLQPQGPPP 176
>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1,
2, 3, 4 family. These eukaryotic proteins recognize the
poly-A of mRNA and consists of four tandem RNA
recognition domains at the N-terminus (rrm: pfam00076)
followed by a PABP-specific domain (pfam00658) at the
C-terminus. The protein is involved in the transport of
mRNA's from the nucleus to the cytoplasm. There are four
paralogs in Homo sapiens which are expressed in testis
(GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ),
broadly expressed (SP:P11940_PABP1) and of unknown
tissue range (SP:Q15097_PABP2).
Length = 562
Score = 34.4 bits (79), Expect = 0.11
Identities = 17/84 (20%), Positives = 18/84 (21%), Gaps = 1/84 (1%)
Query: 252 PPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAY-P 310
P + S GA G P Q P P P P P P N P
Sbjct: 380 PRMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSMMPTPMGPGGPLRPNGLAP 439
Query: 311 YPQHMNAGRPPHYPPHPGSQHPHQ 334
R P
Sbjct: 440 MNAVRAPSRNAQNAAQKPPMQPVM 463
Score = 30.5 bits (69), Expect = 1.6
Identities = 20/105 (19%), Positives = 27/105 (25%), Gaps = 9/105 (8%)
Query: 238 HHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYP 297
P G G PP+ G + G +P P P P P+G P
Sbjct: 386 PMGSPMGGAMGQ--PPYYGQGPQQQFNGQPLGWPRMSMMPTPMGPGGPLRPNGLAPMNAV 443
Query: 298 QYP-------THPYYGNAYPYPQHMNAGRPPHYPPHPGSQHPHQN 335
+ P YP + + P P S
Sbjct: 444 RAPSRNAQNAAQKPPMQPVMYPPNYQSLPLSQDLPQPQSTASQGG 488
Score = 28.6 bits (64), Expect = 5.6
Identities = 14/67 (20%), Positives = 16/67 (23%), Gaps = 1/67 (1%)
Query: 211 PVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPY 270
P+ P+ P GG P A P P YP
Sbjct: 413 PLGWPRMSMMPT-PMGPGGPLRPNGLAPMNAVRAPSRNAQNAAQKPPMQPVMYPPNYQSL 471
Query: 271 PPPQQYP 277
P Q P
Sbjct: 472 PLSQDLP 478
>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein. This family consists
of several eukaryotic mitotic checkpoint (Mitotic arrest
deficient or MAD) proteins. The mitotic spindle
checkpoint monitors proper attachment of the bipolar
spindle to the kinetochores of aligned sister chromatids
and causes a cell cycle arrest in prometaphase when
failures occur. Multiple components of the mitotic
spindle checkpoint have been identified in yeast and
higher eukaryotes. In S.cerevisiae, the existence of a
Mad1-dependent complex containing Mad2, Mad3, Bub3 and
Cdc20 has been demonstrated.
Length = 722
Score = 34.5 bits (79), Expect = 0.11
Identities = 11/51 (21%), Positives = 27/51 (52%)
Query: 136 VVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQE 186
N + ++ + Q+ K LE+EL+++ E+ E +++ E+ ++ Q
Sbjct: 167 SRIKNDLSEMQCRAQNADTELKLLESELEELREQLEECQKELAEAEKKLQS 217
Score = 28.7 bits (64), Expect = 5.5
Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 11/108 (10%)
Query: 65 QAQQAAEEREAQAQGFSGKNADRRIDIQPAEDEDEQEDGYSVKHVAYARYLRNHRLINEI 124
Q + EE E Q A + E++ Q+ + + L+ + NE
Sbjct: 437 QLMKRLEEAEDLVQKVQSHLAKMENQLSELEEDVGQQKDRNNTLETEIKLLKEQLVSNE- 495
Query: 125 FSDSVVPDVRSVVTTN-RMQVLKRQVQSLTMHQKKLEAELQQIEEKFE 171
R + L+ ++++L + +L E +E K E
Sbjct: 496 ---------RLLSFVKEATNALRLKIETLERERDRLRQEKSLLEMKLE 534
>gnl|CDD|149160 pfam07926, TPR_MLP1_2, TPR/MLP1/MLP2-like protein. The sequences
featured in this family are similar to a region of human
TPR protein and to yeast myosin-like proteins 1 (MLP1)
and 2 (MLP2). These proteins share a number of features;
for example, they all have coiled-coil regions and all
three are associated with nuclear pores. TPR is thought
to be a component of nuclear pore complex- attached
intra-nuclear filaments, and is implicated in nuclear
protein import. Moreover, its N-terminal region is
involved in the activation of oncogenic kinases,
possibly by mediating the dimerisation of kinase domains
or by targeting these kinases to the nuclear pore
complex. MLP1 and MLP2 are involved in the process of
telomere length regulation, where they are thought to
interact with proteins such as Tel1p and modulate their
activity.
Length = 132
Score = 32.7 bits (75), Expect = 0.13
Identities = 10/51 (19%), Positives = 24/51 (47%)
Query: 138 TTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEEL 188
+Q L++Q+ L +L+AE + + + + + E + ++EL
Sbjct: 57 DIEELQALRKQLNELKKEIAQLKAEAESAQAELSEAEESWEEQKKMLEDEL 107
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 34.0 bits (78), Expect = 0.15
Identities = 22/100 (22%), Positives = 30/100 (30%), Gaps = 13/100 (13%)
Query: 189 KKPGMGPEGYLNRLSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHG 248
G GP+ ++ PV T P +A P + P
Sbjct: 369 ASGGRGPKQHIK-----PVFTQPAAAPQPSAAAAASPSPS-------QSSAAAQPSAPQS 416
Query: 249 AMLPPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPP 288
A P P + S P A P PP P A +P +
Sbjct: 417 AT-QPAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEE 455
>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional.
Length = 508
Score = 33.5 bits (77), Expect = 0.16
Identities = 19/140 (13%), Positives = 41/140 (29%), Gaps = 16/140 (11%)
Query: 52 QYLAYMAAKAKGKQAQQAAEEREAQAQGFSGKNADRRIDIQPAEDEDEQEDGYSVKHVAY 111
L AK + ++EA+ + + + + + ++ QE A
Sbjct: 23 VLLKKRQRLAKEAERILQEAQKEAEEKLEAALL-EAKELLLRERNQQRQE--------AR 73
Query: 112 ARYLRNHRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFE 171
R + + R + L L +K L A ++EE +
Sbjct: 74 REREELQREEERLVQ-------KEEQLDARAEKLDNLENQLEEREKALSARELELEELEK 126
Query: 172 AKKRKFVESSEQFQEELKKP 191
+ + E+ +K
Sbjct: 127 QLDNELYRVAGLTPEQARKL 146
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 33.4 bits (77), Expect = 0.16
Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 13/80 (16%)
Query: 119 RLINEIFS--DSVV-----PDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEE-KF 170
L+N + D + P+V V R + ++ +++ +++ E ++ EE K
Sbjct: 236 PLLNLVLYLVDKLANLKLSPEVLRKVDKTREEEEEKILKA--AEEERQEEAQEKKEEKKK 293
Query: 171 EAKKRKFVESSEQFQEELKK 190
E ++ K + S EE +K
Sbjct: 294 EEREAKLAKLSP---EEQRK 310
>gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 157
Score = 32.6 bits (75), Expect = 0.17
Identities = 9/47 (19%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 145 LKRQVQSLTMHQKKL-EAELQQIEEKFEAKKRKFVESSEQFQEELKK 190
L+++ Q L L E + +++ + K+++ + + Q+EL++
Sbjct: 58 LQKEEQKLQKQAATLSEEARKAKQQELQQKQQELQQKQQAAQQELQQ 104
Score = 29.1 bits (66), Expect = 2.4
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 139 TNRMQVLKRQVQSLTMHQ-KKLEAELQQIEEKFEAKKRKFVESSEQFQEELKKP 191
Q L++Q +L+ K + ELQQ +++ + K++ + +Q Q+EL +P
Sbjct: 59 QKEEQKLQKQAATLSEEARKAKQQELQQKQQELQQKQQAAQQELQQKQQELLQP 112
Score = 28.4 bits (64), Expect = 3.6
Identities = 8/41 (19%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 156 QKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKKPGMGPE 196
QK+LE E ++++ + + K+++ + ++ Q+ + + E
Sbjct: 37 QKQLEKEFKKLQAELQKKEKELQKEEQKLQK--QAATLSEE 75
Score = 27.6 bits (62), Expect = 6.2
Identities = 13/70 (18%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 121 INEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVES 180
+ ++ S+S P ++ +++ +++Q+ +K E ELQ+ E+K + + S
Sbjct: 23 VQKVLSES--PAGKAAQK--QLEKEFKKLQA---ELQKKEKELQKEEQKLQKQAATL--S 73
Query: 181 SEQFQEELKK 190
E + + ++
Sbjct: 74 EEARKAKQQE 83
>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein
[Function unknown].
Length = 294
Score = 33.1 bits (76), Expect = 0.18
Identities = 10/38 (26%), Positives = 24/38 (63%), Gaps = 6/38 (15%)
Query: 157 KKLEAELQQIEEKFE------AKKRKFVESSEQFQEEL 188
K LE E++++E+K + ++R+ V+ ++ ++EL
Sbjct: 110 KSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKEL 147
>gnl|CDD|204032 pfam08703, PLC-beta_C, PLC-beta C terminal. This domain
corresponds to the alpha helical C terminal domain of
phospholipase C beta.
Length = 181
Score = 32.5 bits (74), Expect = 0.19
Identities = 11/48 (22%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 143 QVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQ-FQEELK 189
Q +KR ++ Q+KLE + +I ++ + ++ K + ++ +LK
Sbjct: 108 QSIKRLEEAQKRRQEKLEEKQAEILQQIQEEEPKLQAEATAEYEAKLK 155
>gnl|CDD|218987 pfam06320, GCN5L1, GCN5-like protein 1 (GCN5L1). This family
consists of several eukaryotic GCN5-like protein 1
(GCN5L1) sequences. The function of this family is
unknown.
Length = 121
Score = 31.6 bits (72), Expect = 0.22
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 135 SVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEE---KFEAKKRKFVESSEQFQEELKKP 191
+ +T + + V +QK+LEAE + ++ F + +++ E F LK+
Sbjct: 28 NALTDALVDTVNAGVAQAYANQKRLEAEAKALQATSAAFAKQTEQWLTLIENFNTALKEI 87
Query: 192 G 192
G
Sbjct: 88 G 88
>gnl|CDD|218116 pfam04503, SSDP, Single-stranded DNA binding protein, SSDP. This
is a family of eukaryotic single-stranded DNA binding
proteins with specificity to a pyrimidine-rich element
found in the promoter region of the alpha2(I) collagen
gene.
Length = 293
Score = 32.8 bits (74), Expect = 0.23
Identities = 36/116 (31%), Positives = 38/116 (32%), Gaps = 8/116 (6%)
Query: 198 YLNRLSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRP 257
Y + SPVL G P GP P G G P S G M +P
Sbjct: 12 YSAAAAPSPVLGNMPPGDGMPQGPDPPGFFQGAGGKQHQQKKTPQS-GSTPQMQNTTSQP 70
Query: 258 GSPSGYPGAGGPYPP---PQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYP 310
YPG GP PP P Q PG P P G P Q HP G
Sbjct: 71 FMSPRYPG--GPRPPLRMPNQPPGGVPGSQPLLPGGMDPTVRQQ--GHPNMGGPMQ 122
>gnl|CDD|153337 cd07653, F-BAR_CIP4-like, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein
4 and similar proteins. F-BAR domains are dimerization
modules that bind and bend membranes and are found in
proteins involved in membrane dynamics and actin
reorganization. This subfamily is composed of
Cdc42-Interacting Protein 4 (CIP4), Formin Binding
Protein 17 (FBP17), FormiN Binding Protein 1-Like
(FNBP1L), and similar proteins. CIP4 and FNBP1L are
Cdc42 effectors that bind Wiskott-Aldrich syndrome
protein (WASP) and function in endocytosis. CIP4 and
FBP17 bind to the Fas ligand and may be implicated in
the inflammatory response. CIP4 may also play a role in
phagocytosis. Members of this subfamily typically
contain an N-terminal F-BAR domain and a C-terminal SH3
domain. In addition, some members such as FNBP1L contain
a central Cdc42-binding HR1 domain. F-BAR domains form
banana-shaped dimers with a positively-charged concave
surface that binds to negatively-charged lipid
membranes. They can induce membrane deformation in the
form of long tubules.
Length = 251
Score = 32.6 bits (75), Expect = 0.24
Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 118 HRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKF 177
H LI E + +V +++++++ R Q K+ + KL+ +L+ ++ E K+ +
Sbjct: 81 HELIAENLNSNVCKELKTLISELR-QERKKHLS----EGSKLQQKLESSIKQLEKSKKAY 135
Query: 178 V 178
Sbjct: 136 E 136
>gnl|CDD|165468 PHA03201, PHA03201, uracil DNA glycosylase; Provisional.
Length = 318
Score = 32.9 bits (75), Expect = 0.27
Identities = 25/86 (29%), Positives = 27/86 (31%), Gaps = 8/86 (9%)
Query: 211 PVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGS------PSGYP 264
S PP PP P A+ PPS G GA PP G P G P
Sbjct: 4 ARSRSPSPPRRPSPPRPTPPRSPDASPEETPPSPPGPGAEPPPGRAAGPAAPRRRPRGCP 63
Query: 265 GA--GGPYPPPQQYPGASQPLAPRPP 288
PP+ G A PP
Sbjct: 64 AGVTFSSSAPPRPPLGLDDAPAATPP 89
>gnl|CDD|214787 smart00721, BAR, BAR domain.
Length = 239
Score = 32.4 bits (74), Expect = 0.29
Identities = 28/175 (16%), Positives = 56/175 (32%), Gaps = 29/175 (16%)
Query: 37 FSEYEKNLKAYHNSPQ--------YLAYMAA--------KAKGKQAQQAAEEREAQAQGF 80
F E E+ + YL A K K + E + +G
Sbjct: 29 FEELERRFDTTEAEIEKLQKDTKLYLQPNPAVRAKLASQKKLSKSLGEVYEGGDD-GEGL 87
Query: 81 SGKNADRRIDIQPAEDEDEQEDG-YSVKHVAYARYLRNHRLINEIFSDSVVPDVRSVVT- 138
++ + + E + S+ V L F +++
Sbjct: 88 GADSSYGKALDKLGEALKKLLQVEESLSQVKRTFILPLLN-----FLLGEFKEIKKARKK 142
Query: 139 -TNRMQVL---KRQVQSL-TMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEEL 188
++ + +++ +KK + +L + EE+ K++F ES+ Q EEL
Sbjct: 143 LERKLLDYDSARHKLKKAKKSKEKKKDEKLAKAEEELRKAKQEFEESNAQLVEEL 197
>gnl|CDD|129661 TIGR00570, cdk7, CDK-activating kinase assembly factor MAT1. All
proteins in this family for which functions are known
are cyclin dependent protein kinases that are components
of TFIIH, a complex that is involved in nucleotide
excision repair and transcription initiation. Also known
as MAT1 (menage a trois 1). This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 309
Score = 32.5 bits (74), Expect = 0.29
Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 143 QVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKKPGMGPEGYLNRL 202
V+++ + T Q++LE E + E++ E ++R ++ E+ Q+ K+ + L+ L
Sbjct: 131 DVIQKNKEKSTREQEELE-EALEFEKEEEEQRRLLLQKEEEEQQMNKR--KNKQALLDEL 187
Query: 203 SAS 205
S
Sbjct: 188 ETS 190
>gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 140
Score = 31.4 bits (72), Expect = 0.31
Identities = 13/59 (22%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 140 NRMQVLKRQVQSLTMHQKKL--------EAELQQIEEKFEAKKRKFVESSEQFQEELKK 190
R L++ + L ++KL EA ++ E++ + K ++F ++ Q++L+K
Sbjct: 29 KRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQRKQQKLQQDLQK 87
Score = 31.4 bits (72), Expect = 0.36
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 157 KKLEAELQQIEEKFEAKKRKFVESSEQFQEELKKP 191
+K E ELQ+ ++F+ K++K + ++ Q+E +
Sbjct: 61 EKKEKELQKKVQEFQRKQQKLQQDLQKRQQEELQK 95
Score = 28.3 bits (64), Expect = 3.1
Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 156 QKKLEAELQQIEEKFEAKKRKFVE-----SSEQFQEELKK 190
KK +AEL+++E++ + K K + S +++ K+
Sbjct: 27 FKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKE 66
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 32.8 bits (75), Expect = 0.32
Identities = 24/145 (16%), Positives = 51/145 (35%), Gaps = 34/145 (23%)
Query: 53 YLAYMAAKAKGKQAQQAAEEREAQAQGFSGKNADRRIDI-------QPAEDEDEQEDGYS 105
Y AY+A K K ++ ER+ G + + + E+E
Sbjct: 351 YKAYLAYKPKLEKV-----ERKLPELGIWKDVERIKALVIRGYPLAEALSKVKEEERP-R 404
Query: 106 VKHVAYARYLRNHRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQ 165
K R ++ R++ L+ V+ L +L+ EL++
Sbjct: 405 EKEGTEEEERR---------------EITVYE--KRIKKLEETVERLEEENSELKRELEE 447
Query: 166 IEEKFEAKKRKFVESSEQFQEELKK 190
++ + E + + E+F+ E++
Sbjct: 448 LKREIEKLESEL----ERFRREVRD 468
>gnl|CDD|218108 pfam04487, CITED, CITED. CITED, CBP/p300-interacting
transactivator with ED-rich tail, are characterized by a
conserved 32-amino acid sequence at the C-terminus.
CITED proteins do not bind DNA directly and are thought
to function as transcriptional co-activators.
Length = 206
Score = 32.2 bits (73), Expect = 0.32
Identities = 24/130 (18%), Positives = 30/130 (23%), Gaps = 17/130 (13%)
Query: 217 PPPGPSVPPMHGGQTGPVATVHHPPPS--------QGGHGAMLPPHPRPGSPSGYPGAGG 268
H + +H+P G M HP P+
Sbjct: 26 NSLAAPNHGPHDLRALMGTLLHYPGGGMDASGRPRSAMSGPMGGGHPHQSMPA--YMMFN 83
Query: 269 PYPPPQQYPGASQPLAPRPPH-----GQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHY 323
P PQ + P QY HP G P AG+PP
Sbjct: 84 PSSKPQPFMLVPGPQLMASMQLQKLNTQYQGHAGAPAGHP--GGGGPQQFRPGAGQPPGM 141
Query: 324 PPHPGSQHPH 333
P P
Sbjct: 142 QHMPAPALPP 151
Score = 29.9 bits (67), Expect = 1.7
Identities = 13/77 (16%), Positives = 19/77 (24%), Gaps = 1/77 (1%)
Query: 209 TAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGG 268
P P + G +A++ + G P PG G
Sbjct: 76 MPAYMMFNPSSKPQPFMLVPGPQL-MASMQLQKLNTQYQGHAGAPAGHPGGGGPQQFRPG 134
Query: 269 PYPPPQQYPGASQPLAP 285
PP + L P
Sbjct: 135 AGQPPGMQHMPAPALPP 151
>gnl|CDD|220410 pfam09798, LCD1, DNA damage checkpoint protein. This is a family
of proteins which regulate checkpoint kinases. In
Schizosaccharomyces pombe this protein is called Rad26
and in Saccharomyces cerevisiae it is called LCD1.
Length = 648
Score = 32.9 bits (75), Expect = 0.33
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 154 MHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKKPGMGPEGYLNRL 202
M + KL+ QQ +E+ +K + E E+ +EL+K + L L
Sbjct: 1 MLRDKLDMLQQQKQEERNKQKSRVNELKEKHDQELQK----LKQELQSL 45
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 585
Score = 32.9 bits (75), Expect = 0.34
Identities = 17/97 (17%), Positives = 24/97 (24%), Gaps = 14/97 (14%)
Query: 189 KKPGMGPEGYLNRLSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHG 248
+P P +A+ + + P P P PVA P
Sbjct: 379 VRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPR-------PVAPPVPHTPESA--- 428
Query: 249 AMLPPHPRPGSPSG-YPGAGGPYPPPQQYPGASQPLA 284
P R P P P PP ++
Sbjct: 429 ---PKLTRAAIPVDEKPKYTPPAPPKEEEKALIADGD 462
Score = 31.3 bits (71), Expect = 0.81
Identities = 22/91 (24%), Positives = 28/91 (30%), Gaps = 5/91 (5%)
Query: 209 TAPVSAQGPPPGPS-VPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAG 267
AP A+ PS V P T P A P + P P P P P
Sbjct: 364 PAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPP--- 420
Query: 268 GPYPPPQQYPGASQPLAPRPPHGQYPYPYPQ 298
P+ P ++ P +Y P P
Sbjct: 421 -VPHTPESAPKLTRAAIPVDEKPKYTPPAPP 450
Score = 30.5 bits (69), Expect = 1.7
Identities = 21/87 (24%), Positives = 26/87 (29%), Gaps = 7/87 (8%)
Query: 240 PPPSQGGHGAMLPPHPRPG-SPSGYPGAGGPYPPPQQYPGAS----QPLAPRPPHGQYPY 294
P P A P RP +PS P A P + P P+ PRP P+
Sbjct: 364 PAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPH 423
Query: 295 PYPQYPTHPYYGNAYPYPQHMNAGRPP 321
P A P + P
Sbjct: 424 TPESAPKLT--RAAIPVDEKPKYTPPA 448
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 32.8 bits (75), Expect = 0.37
Identities = 25/160 (15%), Positives = 50/160 (31%), Gaps = 25/160 (15%)
Query: 34 ENNFSEYEKNLKAYHNS--PQYLAYMAAKAKGKQAQQAAEEREAQAQGFSGKNADRRIDI 91
E EK L+ A K + ++ + E + + K
Sbjct: 500 REEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEK-------- 551
Query: 92 QPAEDEDEQEDGYSVKHVAYARYLRNHRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQS 151
+ E+ + L RL+ ++ L+ +++
Sbjct: 552 LQLQQLKEELRQLEDRLQELKELLEELRLLRTR--------------KEELEELRERLKE 597
Query: 152 LTMHQKKLEAELQQIEEKFEAK-KRKFVESSEQFQEELKK 190
L K+LE L Q+EE ++ + E+ +EEL+
Sbjct: 598 LKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELES 637
Score = 30.9 bits (70), Expect = 1.3
Identities = 24/139 (17%), Positives = 50/139 (35%), Gaps = 35/139 (25%)
Query: 55 AYMAAKAKGKQAQQAAEEREAQAQGFSGKNADRRIDIQPAEDEDEQEDGYSVKHVAYARY 114
K K+A+ EE E Q ED ++ A
Sbjct: 172 LSELLKEVIKEAKAKIEELEGQLS---------------ELLEDIEDL-----LEALEEE 211
Query: 115 LRNHRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEK---FE 171
L+ + + EI + + L++++++L +LE E +++EE
Sbjct: 212 LKELKKLEEIQEEQ------------EEEELEQEIEALEERLAELEEEKERLEELKARLL 259
Query: 172 AKKRKFVESSEQFQEELKK 190
+ +E+ + +EEL++
Sbjct: 260 EIESLELEALKIREEELRE 278
>gnl|CDD|115072 pfam06391, MAT1, CDK-activating kinase assembly factor MAT1. MAT1
is an assembly/targeting factor for cyclin-dependent
kinase-activating kinase (CAK), which interacts with the
transcription factor TFIIH. The domain found to the
N-terminal side of this domain is a C3HC4 RING finger.
Length = 200
Score = 31.7 bits (72), Expect = 0.38
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 120 LINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVE 179
L N I + V N+ + R + LT Q++LE L++ E++ + +KR ++
Sbjct: 57 LTNGIDVEETEEKVDQYEKENK-DSIMRNKRRLTREQEELEQALEE-EKEMKEEKRLHLQ 114
Query: 180 SSEQFQEELKK 190
EQ Q+ K+
Sbjct: 115 KEEQEQKMAKE 125
>gnl|CDD|206243 pfam14073, Cep57_CLD, Centrosome localisation domain of Cep57. The
CLD or centrosome localisation domain of Cep57 is found
at the N-terminus, and lies approximately between
residues 58 and 239. This region lies within the first
alpha-helical coiled-coil segment of Cep57, and
localises to the centrosome internally to gamma-tubulin,
suggesting that it is either on both centrioles or on a
centromatrix component. This N-terminal region can also
multimerise with the N-terminus of other Cep57
molecules. The C-terminal part, Family Cep57_MT_bd,
pfam06657, is the microtubule-binding region of Cep57.
Length = 178
Score = 31.7 bits (72), Expect = 0.38
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKF--EAKKRKFV-ESSEQFQEEL 188
+++VL+++ LT Q E ++QQ+EEK E +RK V + + + Q L
Sbjct: 120 EKLEVLEKEYLRLTRTQSLAETKIQQLEEKLQEEEHQRKLVQDKAAELQTGL 171
>gnl|CDD|219761 pfam08243, SPT2, SPT2 chromatin protein. This family includes the
Saccharomyces cerevisiae protein SPT2 which is a
chromatin protein involved in transcriptional
regulation.
Length = 116
Score = 31.0 bits (70), Expect = 0.39
Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
Query: 86 DRRID--IQPAEDEDEQEDGYSVKHVAYARYLRNHRLINEIFSDSVVPDVRSVVTTNRMQ 143
D +D I+ +DE++ E Y + + + D + M+
Sbjct: 25 DEDMDDFIED-DDEEQDEIPYDSDEI---WAIFGKGRKRSYYDRYDEDDALDNMEATFME 80
Query: 144 VLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRK 176
+ K + +S M + + E EL + EE+ + KK+K
Sbjct: 81 IQKEERRSARMARLEDERELAREEEEEKRKKKK 113
>gnl|CDD|200948 pfam00038, Filament, Intermediate filament protein.
Length = 312
Score = 32.2 bits (74), Expect = 0.39
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 16/73 (21%)
Query: 132 DVRSVVTTNRMQV---------LKRQVQSLTM---HQKK----LEAELQQIEEKFEAKKR 175
+++ N + L+RQ+QSL + KK LE +L ++EE++E +
Sbjct: 199 ELQQAAARNGDALRSAKEEITELRRQIQSLEIELQSLKKQKASLERQLAELEERYELELA 258
Query: 176 KFVESSEQFQEEL 188
+ ++ + +EEL
Sbjct: 259 DYQDTISELEEEL 271
Score = 28.3 bits (64), Expect = 6.4
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 149 VQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190
V+ L K+LEA+++++ +K A+ + EQ EL+K
Sbjct: 20 VRFLEQQNKELEAKIEELRQKKSAEPSRLYSLYEQEIRELRK 61
>gnl|CDD|234669 PRK00153, PRK00153, hypothetical protein; Validated.
Length = 104
Score = 30.5 bits (70), Expect = 0.40
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 7/52 (13%)
Query: 57 MAAKAKGKQAQQAAEEREAQAQG------FSGKNADRRIDIQP-AEDEDEQE 101
M K + Q + A E E +A G +GK +R+ I P D ++ E
Sbjct: 15 MQEKMQKMQEELAQMEVEGEAGGGLVKVTMTGKKEVKRVKIDPSLVDPEDVE 66
>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421). This
family represents a conserved region approximately 350
residues long within a number of plant proteins of
unknown function.
Length = 357
Score = 32.2 bits (73), Expect = 0.41
Identities = 29/131 (22%), Positives = 37/131 (28%), Gaps = 9/131 (6%)
Query: 206 PVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPG 265
+ A + P P Q P P Q +P P P YP
Sbjct: 67 QQVNAALPPAPAPQSPQPDQQQQSQAPPSHQYPSQLPPQ--QVQSVPQQPTPQQEPYYPP 124
Query: 266 AGGPYPPPQQ----YPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPP 321
P PPP Q P P+ Q P PQY +P +G P
Sbjct: 125 PSQPQPPPAQQPQAQQPQPPPQVPQQQQYQSPPQQPQYQQNPPPQAQSAPQ---VSGLYP 181
Query: 322 HYPPHPGSQHP 332
P+ +P
Sbjct: 182 EESPYQPQSYP 192
Score = 29.9 bits (67), Expect = 2.1
Identities = 34/166 (20%), Positives = 48/166 (28%), Gaps = 9/166 (5%)
Query: 203 SASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSG 262
VS P P P + +++ PP G + P SP
Sbjct: 167 PPQAQSAPQVSGLYPEESPYQPQSYPPNEPLPSSMAMQPPYSGAPPSQQFYGPPQPSPYM 226
Query: 263 YPGAGGP---------YPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQ 313
Y G GG PPP Q P P G + P + YP
Sbjct: 227 YGGPGGRPNSGFPSGQQPPPSQGQEGYGYSGPPPSKGNHGSVASYAPQGSSQSYSTAYPS 286
Query: 314 HMNAGRPPHYPPHPGSQHPHQNCAHPETGQLVFQEGVLAKAMRLGY 359
A P P + P++G V + V+ K +G+
Sbjct: 287 LPAATVLPQALPMSSAPMSGGGSGSPQSGNRVPIDDVIEKVATMGF 332
>gnl|CDD|225820 COG3281, Ble, Uncharacterized protein, probably involved in
trehalose biosynthesis [Carbohydrate transport and
metabolism].
Length = 438
Score = 32.2 bits (73), Expect = 0.48
Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 10/89 (11%)
Query: 41 EKNLKAYHNSPQYLAYMAAKAKGKQAQQAAEEREAQAQGFSGKNADRRID-------IQP 93
+++ S Y AY +A G+ + A E+R +A+ + + +D I
Sbjct: 326 LRDVAGLLRSFDYAAYGPLQALGRTDEAADEQRRGEARRWVEASRAAFLDGYAAASSIDG 385
Query: 94 AEDEDEQE--DGYSVKHVAY-ARYLRNHR 119
ED E Y ++ AY Y +R
Sbjct: 386 LPGEDSAELLAAYLLEKAAYEVGYEARYR 414
>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein.
Length = 582
Score = 32.2 bits (73), Expect = 0.48
Identities = 20/89 (22%), Positives = 23/89 (25%)
Query: 226 MHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAP 285
GG+ G + PPP G S S PG P + P P
Sbjct: 174 QIGGRGGNIPGAIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQP 233
Query: 286 RPPHGQYPYPYPQYPTHPYYGNAYPYPQH 314
P P P P PQ
Sbjct: 234 SAPPASIPAPPIPPVIQYVAPPPVPPPQP 262
>gnl|CDD|235832 PRK06567, PRK06567, putative bifunctional glutamate synthase
subunit beta/2-polyprenylphenol hydroxylase; Validated.
Length = 1028
Score = 32.2 bits (73), Expect = 0.49
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 139 TNRMQVLKRQVQSLTMH--QKKLEAELQQIEEKFEAKKRKFVE--SSEQFQEELKKPGMG 194
T + K+QV+ +K L E ++I E+F A + F E ++E+ ++ K G
Sbjct: 567 TESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFIAHAKLFKEAKNNEELRKVFNKLGGA 626
Query: 195 PEGYLNRLSASPV 207
Y RL SP
Sbjct: 627 TVYYRGRLQDSPA 639
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit.
Transcription initiation factor IIA (TFIIA) is a
heterotrimer, the three subunits being known as alpha,
beta, and gamma, in order of molecular weight. The N and
C-terminal domains of the gamma subunit are represented
in pfam02268 and pfam02751, respectively. This family
represents the precursor that yields both the alpha and
beta subunits. The TFIIA heterotrimer is an essential
general transcription initiation factor for the
expression of genes transcribed by RNA polymerase II.
Together with TFIID, TFIIA binds to the promoter region;
this is the first step in the formation of a
pre-initiation complex (PIC). Binding of the rest of the
transcription machinery follows this step. After
initiation, the PIC does not completely dissociate from
the promoter. Some components, including TFIIA, remain
attached and re-initiate a subsequent round of
transcription.
Length = 332
Score = 32.0 bits (73), Expect = 0.50
Identities = 20/136 (14%), Positives = 26/136 (19%), Gaps = 12/136 (8%)
Query: 214 AQGPP-PGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPP 272
A+ P P P PP P+ Q H P P
Sbjct: 45 AEFPWDPSPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALP 104
Query: 273 PQQYPGASQP-----LAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHYPPHP 327
Q + P P P A + + + P
Sbjct: 105 AGPAGPTIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRA------LQQLQQRYGAPAS 158
Query: 328 GSQHPHQNCAHPETGQ 343
G Q A
Sbjct: 159 GQLPSQQQSAQKNDES 174
Score = 29.7 bits (67), Expect = 2.8
Identities = 13/80 (16%), Positives = 18/80 (22%)
Query: 203 SASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSG 262
A P A + Q P + T A P+Q L +
Sbjct: 101 FALPAGPAGPTIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAPASGQ 160
Query: 263 YPGAGGPYPPPQQYPGASQP 282
P + QP
Sbjct: 161 LPSQQQSAQKNDESQLQQQP 180
>gnl|CDD|219358 pfam07271, Cytadhesin_P30, Cytadhesin P30/P32. This family
consists of several Mycoplasma species specific
Cytadhesin P32 and P30 proteins. P30 has been found to
be membrane associated and localised on the tip
organelle. It is thought that it is important in
cytadherence and virulence.
Length = 279
Score = 32.0 bits (72), Expect = 0.51
Identities = 36/180 (20%), Positives = 57/180 (31%), Gaps = 19/180 (10%)
Query: 156 QKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKKPGMGPEGYLNRLSASPVLTAPVSAQ 215
Q+++ +LQ+I E+ E + + + E +E +P + P +
Sbjct: 109 QEQMAEQLQRISEQNEQQAIEIDPTEEVNTQEPTQPAGVNVANNPQPQVQPQFGPNPQQR 168
Query: 216 GPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQ 275
P P P + PP G M P RPG P P
Sbjct: 169 INPQRFGFPMQPNMGMRP--GFNQMPPHMPG---MPPNQMRPGFN--------PMPGMPP 215
Query: 276 YPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHYPPHPG-SQHPHQ 334
PG + P+ P + P N P N + P + P+ G + PH
Sbjct: 216 RPGF-----NQNPNMMPNMNRPGFRPQPGGFNHPGTPMGPNMQQRPGFNPNQGMNPPPHM 270
>gnl|CDD|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily). This Pfam
entry includes some of the AAA proteins not detected by
the pfam00004 model.
Length = 135
Score = 30.7 bits (70), Expect = 0.52
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 338 HPETGQLVFQEGVLAKAMRLGYWIILDELNLAP---LPFLLYLL 378
+ + G + +G L +A R G +LDE+N A L LL LL
Sbjct: 47 NIDPGGASWVDGPLVRAAREGEIAVLDEINRANPDVLNSLLSLL 90
>gnl|CDD|218635 pfam05556, Calsarcin, Calcineurin-binding protein (Calsarcin).
This family consists of several mammalian
calcineurin-binding proteins. The calcium- and
calmodulin-dependent protein phosphatase calcineurin has
been implicated in the transduction of signals that
control the hypertrophy of cardiac muscle and slow fibre
gene expression in skeletal muscle. Calsarcin-1 and
calsarcin-2 are expressed in developing cardiac and
skeletal muscle during embryogenesis, but calsarcin-1 is
expressed specifically in adult cardiac and slow-twitch
skeletal muscle, whereas calsarcin-2 is restricted to
fast skeletal muscle. Calsarcins represent a novel
family of sarcomeric proteins that link calcineurin with
the contractile apparatus, thereby potentially coupling
muscle activity to calcineurin activation. Calsarcin-3,
is expressed specifically in skeletal muscle and is
enriched in fast-twitch muscle fibres. Like calsarcin-1
and calsarcin-2, calsarcin-3 interacts with calcineurin,
and the Z-disc proteins alpha-actinin, gamma-filamin,
and telethonin.
Length = 273
Score = 31.7 bits (72), Expect = 0.54
Identities = 12/46 (26%), Positives = 14/46 (30%)
Query: 243 SQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPP 288
+ G H + P G Y P PG PL PP
Sbjct: 102 NSEGSIPQGDSHQPGQTQPNTPDLGSVYNPEAIAPGYGGPLKEIPP 147
>gnl|CDD|115367 pfam06705, SF-assemblin, SF-assemblin/beta giardin. This family
consists of several eukaryotic SF-assemblin and related
beta giardin proteins. During mitosis the
SF-assemblin-based cytoskeleton is reorganised; it
divides in prophase and is reduced to two dot-like
structures at each spindle pole in metaphase. During
anaphase, the two dots present at each pole are
connected again. In telophase there is an asymmetrical
outgrowth of new fibres. It has been suggested that
SF-assemblin is involved in re-establishing the
microtubular root system characteristic of interphase
cells after mitosis.
Length = 247
Score = 31.7 bits (72), Expect = 0.56
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 14/58 (24%)
Query: 133 VRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190
R + R Q++ + L +K LEAE+ K+R ES +Q QE +
Sbjct: 27 QRRIAEATRFQMITEAIARL---EKSLEAEV---------KRR--AESDKQIQEHFEG 70
>gnl|CDD|222579 pfam14179, YppG, YppG-like protein. The YppG-like protein family
includes the B. subtilis YppG protein, which is
functionally uncharacterized. This family of proteins is
found in bacteria. Proteins in this family are typically
between 115 and 181 amino acids in length. There are two
completely conserved residues (F and G) that may be
functionally important.
Length = 110
Score = 30.1 bits (68), Expect = 0.58
Identities = 19/68 (27%), Positives = 20/68 (29%), Gaps = 3/68 (4%)
Query: 263 YPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPH 322
Y YPP Q QP +P H Q P P P P PQ P
Sbjct: 3 YQQNTNQYPPQNQQQ---QPYQQQPYHQQMPPPPYSPPQQQQGHFMPPQPQPYPKQSPQQ 59
Query: 323 YPPHPGSQ 330
P S
Sbjct: 60 QQPPQFSS 67
Score = 29.3 bits (66), Expect = 1.3
Identities = 13/52 (25%), Positives = 14/52 (26%), Gaps = 3/52 (5%)
Query: 292 YPYPYPQYPTHPYYGNAYPY---PQHMNAGRPPHYPPHPGSQHPHQNCAHPE 340
PY P PY P H PP+ PP H P
Sbjct: 1 NPYQQNTNQYPPQNQQQQPYQQQPYHQQMPPPPYSPPQQQQGHFMPPQPQPY 52
Score = 27.4 bits (61), Expect = 6.0
Identities = 15/62 (24%), Positives = 17/62 (27%), Gaps = 2/62 (3%)
Query: 242 PSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPT 301
P Q P + + P PPP P Q PP Q PYP
Sbjct: 2 PYQQNTNQYPPQNQQQQ-PYQQQPYHQQMPPPPYSPPQQQQGHFMPPQPQ-PYPKQSPQQ 59
Query: 302 HP 303
Sbjct: 60 QQ 61
>gnl|CDD|220708 pfam10349, WWbp, WW-domain ligand protein. The WWbp domain is
characterized by several short PY and PT-like motifs of
the PPPPY form. These appear to bind directly to the WW
domains of WWP1 and WWP2 and other such diverse proteins
as dystrophin and YAP (Yes-associated protein). This is
the WW-domain binding protein WWbp via PY and PY_like
motifs. The presence of a phosphotyrosine residue in the
pWBP-1 peptide abolishes WW domain binding which
suggests a potential regulatory role for tyrosine
phosphorylation in modulating WW domain-ligand
interactions. Given the likelihood that WWP1 and WWP2
function as E3 ubiquitin-protein ligases, it is possible
that initial substrate-specific recognition occurs via
WW domain-substrate protein interaction followed by
ubiquitin transfer and subsequent proteolysis. This
domain lies just downstream of the GRAM (pfam02893) in
many members.
Length = 111
Score = 30.1 bits (68), Expect = 0.61
Identities = 21/73 (28%), Positives = 22/73 (30%), Gaps = 3/73 (4%)
Query: 252 PPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPY 311
P R PGA P Y + P PP YP P YPT P
Sbjct: 38 QPVSRESGYYPPPGAYVHLEPLPAYGQYAAPPPYGPPPPYYPAPPGVYPTPP---PPNSG 94
Query: 312 PQHMNAGRPPHYP 324
PP YP
Sbjct: 95 YMADPQEPPPPYP 107
>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein,
HlyD family. Type I secretion is an ABC transport
process that exports proteins, without cleavage of any
signal sequence, from the cytosol to extracellular
medium across both inner and outer membranes. The
secretion signal is found in the C-terminus of the
transported protein. This model represents the adaptor
protein between the ATP-binding cassette (ABC) protein
of the inner membrane and the outer membrane protein,
and is called the membrane fusion protein. This model
selects a subfamily closely related to HlyD; it is
defined narrowly and excludes, for example, colicin V
secretion protein CvaA and multidrug efflux proteins
[Protein fate, Protein and peptide secretion and
trafficking].
Length = 423
Score = 31.5 bits (72), Expect = 0.65
Identities = 24/140 (17%), Positives = 53/140 (37%), Gaps = 6/140 (4%)
Query: 51 PQYLAYMAAKAKGKQAQQAAEEREAQAQGFSGKNADRRIDIQPAEDEDEQEDGYSVKHVA 110
P L A + + E++ + I Q + E E G + A
Sbjct: 113 PDDLLSAEDPAVPELIKGQQSLFESRKSTLRAQLE--LILAQIKQLEAELA-GLQAQLQA 169
Query: 111 YARYLRNHRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKF 170
+ L +I+E + +V+ + L+R+ +LEAEL+ ++ +
Sbjct: 170 LRQQLE---VISEELEARRKLKEKGLVSRLELLELERERAEAQGELGRLEAELEVLKRQI 226
Query: 171 EAKKRKFVESSEQFQEELKK 190
+ + + + + F+EE+ +
Sbjct: 227 DELQLERQQIEQTFREEVLE 246
>gnl|CDD|222417 pfam13851, GAS, Growth-arrest specific micro-tubule binding. This
family is the highly conserved central region of a
number of metazoan proteins referred to as growth-arrest
proteins. In mouse, Gas8 is predominantly a testicular
protein, whose expression is developmentally regulated
during puberty and spermatogenesis. In humans, it is
absent in infertile males who lack the ability to
generate gametes. The localisation of Gas8 in the
motility apparatus of post-meiotic gametocytes and
mature spermatozoa, together with the detection of Gas8
also in cilia at the apical surfaces of epithelial cells
lining the pulmonary bronchi and Fallopian tubes
suggests that the Gas8 protein may have a role in the
functioning of motile cellular appendages. Gas8 is a
microtubule-binding protein localised to regions of
dynein regulation in mammalian cells.
Length = 201
Score = 31.0 bits (71), Expect = 0.69
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 145 LKRQVQSLTMHQKKLEAELQQIEEKFEAK 173
LK + + L +K+E E ++ +KFEA
Sbjct: 105 LKWESEVLEQRFEKVERERDELYDKFEAA 133
Score = 28.3 bits (64), Expect = 4.5
Identities = 8/43 (18%), Positives = 23/43 (53%)
Query: 138 TTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVES 180
R++ L++++++L + LE +++E + + KF +
Sbjct: 91 LKARLKELEKELKNLKWESEVLEQRFEKVERERDELYDKFEAA 133
>gnl|CDD|178532 PLN02946, PLN02946, cysteine-tRNA ligase.
Length = 557
Score = 31.8 bits (72), Expect = 0.73
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 147 RQVQSLTMHQKKLEAE--LQQIEEKFEAKKRKFVESSEQFQEELKKPGM----GPEGYLN 200
+Q++ + + KL E LQ+IEE+ A+K K E S+ +++L G+ P+G
Sbjct: 483 QQLREKALRRAKLTEEQVLQKIEERTVARKNKEYEKSDAIRKDLAAVGIALMDSPDGTTW 542
Query: 201 RLSASPVLTAPVSA 214
R + L V+A
Sbjct: 543 RPAIPLALQEQVAA 556
>gnl|CDD|219370 pfam07309, FlaF, Flagellar protein FlaF. This family consists of
several bacterial FlaF flagellar proteins. FlaF and
FlaG are trans-acting, regulatory factors that modulate
flagellin synthesis during flagellum biogenesis.
Length = 113
Score = 29.9 bits (68), Expect = 0.73
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 57 MAAKAKGKQAQQAAEEREAQAQGFSGKNADRRIDIQPAEDED 98
MA A + AQ A RE +AQ + + R + A
Sbjct: 1 MAQSAYARVAQSTATPREREAQALA-RATARLQQARKAGAAG 41
>gnl|CDD|113398 pfam04625, DEC-1_N, DEC-1 protein, N-terminal region. The
defective chorion-1 gene (dec-1) in Drosophila encodes
follicle cell proteins necessary for proper eggshell
assembly. Multiple products of the dec-1 gene are formed
by alternative RNA splicing and proteolytic processing.
Cleavage products include S80 (80 kDa) which is
incorporated into the eggshell, and further proteolysis
of S80 gives S60 (60 kDa).
Length = 407
Score = 31.3 bits (70), Expect = 0.78
Identities = 23/67 (34%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
Query: 242 PSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPT 301
P G A LP P S G GA P P P P A+ P AP P P P
Sbjct: 84 PQVGSFLAQLPAMP---SMPGLLGAAAPVPAPAPAPAAAPPAAPAPAADTPAAPIPDAVQ 140
Query: 302 HPYYGNA 308
G A
Sbjct: 141 PAILGQA 147
>gnl|CDD|221501 pfam12273, RCR, Chitin synthesis regulation, resistance to Congo
red. RCR proteins are ER membrane proteins that
regulate chitin deposition in fungal cell walls.
Although chitin, a linear polymer of beta-1,4-linked
N-acetylglucosamine, constitutes only 2% of the cell
wall it plays a vital role in the overall protection of
the cell wall against stress, noxious chemicals and
osmotic pressure changes. Congo red is a cell
wall-disrupting benzidine-type dye extensively used in
many cell wall mutant studies that specifically targets
chitin in yeast cells and inhibits growth. RCR proteins
render the yeasts resistant to Congo red by diminishing
the content of chitin in the cell wall. RCR proteins are
probably regulating chitin synthase III interact
directly with ubiquitin ligase Rsp5, and the VPEY motif
is necessary for this, via interaction with the WW
domains of Rsp5.
Length = 124
Score = 30.1 bits (68), Expect = 0.83
Identities = 19/90 (21%), Positives = 23/90 (25%), Gaps = 11/90 (12%)
Query: 246 GHGAMLPPHPRPGSPSGY----PGAGGPYPPPQQYPGASQPL------APRPPHGQYPYP 295
G + PP R S Y G Y PP L P+ + P
Sbjct: 36 GTAWLAPPSYRQ-SQQQYNNTPQGRPPQYVPPYTETANENDLGYYDGQGEFHPNPKAPAI 94
Query: 296 YPQYPTHPYYGNAYPYPQHMNAGRPPHYPP 325
Q P + Y P PP
Sbjct: 95 ELQPPPNAYERGTRSPTTDDEYQPPAGPPP 124
>gnl|CDD|219133 pfam06682, DUF1183, Protein of unknown function (DUF1183). This
family consists of several eukaryotic proteins of around
360 residues in length. The function of this family is
unknown.
Length = 317
Score = 31.2 bits (71), Expect = 0.84
Identities = 16/67 (23%), Positives = 18/67 (26%), Gaps = 2/67 (2%)
Query: 253 PHPRPGSPSGYPGAGGPYPPPQQYPGASQ-PLAPRPPHGQYPYPYPQYPTHPYYGNAYPY 311
PRP GY G GG G+ P P P P YG+
Sbjct: 185 GGPRPERA-GYGGGGGGGGGGGGGGGSGPGPPPPGFKSSFPPPYGPGAGPSSGYGSGGTR 243
Query: 312 PQHMNAG 318
G
Sbjct: 244 SGQGGWG 250
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 31.6 bits (71), Expect = 0.85
Identities = 25/133 (18%), Positives = 55/133 (41%), Gaps = 14/133 (10%)
Query: 59 AKAKGKQAQQAAEEREAQAQGFSGKNADRRIDIQPAEDEDEQEDGYSVKHVAYARYLRNH 118
AK K +A++AAE ++ + + A + + + AE+ + ++ + A L+
Sbjct: 1495 AKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKK- 1553
Query: 119 RLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFV 178
+++ + + K+ + M +K E E ++ EE + K
Sbjct: 1554 -----------AEELKKAEEKKKAEEAKKAEEDKNMALRKAE-EAKKAEEARIEEVMKLY 1601
Query: 179 ESSEQFQ-EELKK 190
E ++ + EE KK
Sbjct: 1602 EEEKKMKAEEAKK 1614
>gnl|CDD|219461 pfam07543, PGA2, Protein trafficking PGA2. A Saccharomyces
cerevisiae member of this family (PGA2) is an ER protein
which has been implicated in protein trafficking.
Length = 139
Score = 30.2 bits (68), Expect = 0.89
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 53 YLAYMAAKAKGKQAQQAAEEREAQ--AQGFSGKNADR--RIDIQPAEDEDEQEDGYSVK 107
Y + AKA+ K+ ++ ERE + NA R ED D++ED
Sbjct: 33 YFIKLGAKAQEKEHEKERAEREEAREKKAKISPNALRGGATAGHGEEDTDDEEDEEDFA 91
>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation,
ribosomal structure and biogenesis / Posttranslational
modification, protein turnover, chaperones].
Length = 379
Score = 31.2 bits (70), Expect = 0.91
Identities = 19/66 (28%), Positives = 28/66 (42%)
Query: 37 FSEYEKNLKAYHNSPQYLAYMAAKAKGKQAQQAAEEREAQAQGFSGKNADRRIDIQPAED 96
+ E KA + + A K K K+ + A + E +A + K+AD D AE
Sbjct: 263 KGKAEAKNKAEIEAEALASATAVKKKAKEVMKKALKMEKKAIKNAAKDADYFGDADKAEH 322
Query: 97 EDEQED 102
DE D
Sbjct: 323 IDEDVD 328
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 31.1 bits (71), Expect = 0.93
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 153 TMHQKKL---EAELQQI-EEKFEAKKRKFVESSEQFQEELKK 190
+H+ +L E EL++ EK K+++ E + EE K+
Sbjct: 305 EIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEERKE 346
>gnl|CDD|221625 pfam12533, Neuro_bHLH, Neuronal helix-loop-helix transcription
factor. This domain family is found in eukaryotes, and
is approximately 80 amino acids in length. The family is
found C-terminal to pfam00010. There is a single
completely conserved residue W that may be functionally
important. Neuronal basic helix-loop-helix (bHLH)
transcription factors such as neuroD and neurogenin have
been shown to play important roles in neuronal
development.
Length = 120
Score = 29.6 bits (67), Expect = 0.97
Identities = 18/76 (23%), Positives = 24/76 (31%), Gaps = 2/76 (2%)
Query: 242 PSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPT 301
P Q + P P Y G P PP +S PHG P Y +
Sbjct: 38 PEQQQDYSHSGSSPFSQHPYPYQSPGLPSPPHGS--MSSSHSLHLKPHGYCSAYEPFYES 95
Query: 302 HPYYGNAYPYPQHMNA 317
H + PY ++
Sbjct: 96 HSPDCGSPPYDGPLSP 111
>gnl|CDD|218181 pfam04621, ETS_PEA3_N, PEA3 subfamily ETS-domain transcription
factor N terminal domain. The N terminus of the PEA3
transcription factors is implicated in transactivation
and in inhibition of DNA binding. Transactivation is
potentiated by activation of the Ras/MAP kinase and
protein kinase A signalling cascades. The N terminal
region contains conserved MAP kinase phosphorylation
sites.
Length = 336
Score = 31.0 bits (70), Expect = 0.98
Identities = 31/131 (23%), Positives = 37/131 (28%), Gaps = 17/131 (12%)
Query: 203 SASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPR------ 256
SPV Q P GP P+ PP + P R
Sbjct: 139 PCSPVNPQETVRQLQPSGPLSNSSPPSPHTPLPNQSPLPPPMSSPDSSYPSEHRFQRQLS 198
Query: 257 -PGSPSGYPGAGGPYP-PPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQH 314
P P P G P + S+PL P PP G + Q Y+ Y
Sbjct: 199 EPCLPFPPPPGRGSRDGRPPYHRQMSEPLVPYPPQG-----FKQ----EYHDPLYEEAGV 249
Query: 315 MNAGRPPHYPP 325
N G PH
Sbjct: 250 PNQGPFPHPMM 260
Score = 28.7 bits (64), Expect = 5.1
Identities = 21/128 (16%), Positives = 32/128 (25%), Gaps = 3/128 (2%)
Query: 208 LTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAG 267
+P PP G+ + + G P P SP
Sbjct: 91 PQSPSKELNSSCSQKQPPYPYGEKCLYSYSAYDRKPASG-FKPPTPPSTPCSPVNPQETV 149
Query: 268 GPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHYPPHP 327
P +S P P Q P P P Y + + + + + P P P
Sbjct: 150 RQLQPSGPLSNSSPPSPHTPLPNQSPLPPPMSSPDSSYPSEHRFQRQL--SEPCLPFPPP 207
Query: 328 GSQHPHQN 335
+
Sbjct: 208 PGRGSRDG 215
>gnl|CDD|226193 COG3667, PcoB, Uncharacterized protein involved in copper
resistance [Inorganic ion transport and metabolism].
Length = 321
Score = 31.0 bits (70), Expect = 0.98
Identities = 23/122 (18%), Positives = 31/122 (25%), Gaps = 14/122 (11%)
Query: 201 RLSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSP 260
+ + P+ AQ P + P H P H AM S
Sbjct: 9 HHAHAAAALGPLVAQPHPTEAAQP-----------HAHEHAPMDAPHPAMPGMDHHAHSK 57
Query: 261 SGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYP-THPYYGNAYPYPQHMNAGR 319
P P P AP P Q+ + P + A+P Q M
Sbjct: 58 MPGPEMAAPQMDHGAMPHMDH--APPPIPTQHAAERSRSPASAAARVAAFPPAQGMKEHD 115
Query: 320 PP 321
Sbjct: 116 GG 117
>gnl|CDD|145973 pfam03114, BAR, BAR domain. BAR domains are dimerisation, lipid
binding and curvature sensing modules found in many
different protein families. A BAR domain with an
additional N-terminal amphipathic helix (an N-BAR) can
drive membrane curvature. These N-BAR domains are found
in amphiphysin, endophilin, BRAP and Nadrin. BAR domains
are also frequently found alongside domains that
determine lipid specificity, like pfam00169 and
pfam00787 domains in beta centaurins and sorting nexins
respectively.
Length = 230
Score = 30.8 bits (70), Expect = 0.99
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 155 HQKKLEA--ELQQIEEKFEAKKRKFVESSEQFQEEL 188
KK ++ EL + EE+ ++KF ES+E+ +EEL
Sbjct: 153 RLKKAKSKKELSKAEEELRQAQQKFEESNEELKEEL 188
>gnl|CDD|220979 pfam11101, DUF2884, Protein of unknown function (DUF2884). Some
members in this bacterial family of proteins are
annotated as YggN which currently has no known function.
Length = 228
Score = 30.4 bits (69), Expect = 1.1
Identities = 9/68 (13%), Positives = 24/68 (35%), Gaps = 7/68 (10%)
Query: 121 INEIFSDSVVPDVRSVVTTNR-------MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAK 173
++E+ + + R+ +TT + + + + +E+FE
Sbjct: 80 LDEVATGLLGSAARAKLTTLMDELKARVDDSFYKGGDGFVLGAQAFSSLDDTFDEEFEQA 139
Query: 174 KRKFVESS 181
+ V+ S
Sbjct: 140 IEQLVQQS 147
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 31.2 bits (71), Expect = 1.2
Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 145 LKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKKPG 192
++RQ+ SL +KL E+ ++E++ E ++ E+ +++K G
Sbjct: 242 IERQLASLEEELEKLTEEISELEKRLEEIEQLL----EELNKKIKDLG 285
Score = 30.0 bits (68), Expect = 2.5
Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESS---EQFQEELKK 190
++ L+++ + L ++LE +L +E++ E K + E E+ +E+L K
Sbjct: 723 KEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHK 776
>gnl|CDD|130009 TIGR00934, 2a38euk, potassium uptake protein, Trk family. The
proteins of the Trk family are derived from
Gram-negative and Gram-positive bacteria, yeast and
wheat. The proteins of E. coli K12 TrkH and TrkG as well
as several yeast proteins have been functionally
characterized.The E. coli TrkH and TrkG proteins are
complexed to two peripheral membrane proteins, TrkA, an
NAD-binding protein, and TrkE, an ATP-binding protein.
This complex forms the potassium uptake system. This
family is specific for the eukaryotic Trk system
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 800
Score = 31.1 bits (70), Expect = 1.3
Identities = 25/174 (14%), Positives = 42/174 (24%), Gaps = 16/174 (9%)
Query: 151 SLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKKPGMGPEGYLNRLSASPVLTA 210
S+ M Q E I EK A R SSE QE++++ + R S S
Sbjct: 239 SIMMLQGIHER----IREKSSANSRSDERSSESIQEQVER--RPSTSDIERNSQSLTRRY 292
Query: 211 PVSAQGPPPG-PSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPG---- 265
+ + + + + + H R G
Sbjct: 293 DDKSFDKAVRLRRSKTIDRAEACDLEELDRAKDFEKMTYDNWKAHHRKKKNFRPRGWNLK 352
Query: 266 --AGGPYPPPQQYPGASQPLAPRPPH---GQYPYPYPQYPTHPYYGNAYPYPQH 314
+P + P + +P Y +H
Sbjct: 353 FRKASRFPKDSDRNYEDNGNHLSASSSFGSEEPSLSSEENLYPTYNKKREDSRH 406
>gnl|CDD|223029 PHA03264, PHA03264, envelope glycoprotein D; Provisional.
Length = 416
Score = 30.7 bits (69), Expect = 1.4
Identities = 27/105 (25%), Positives = 34/105 (32%), Gaps = 12/105 (11%)
Query: 247 HGAMLPPH---PRPGSPSGYPGAGGPYPPPQQYPGASQPLAP-------RPPHGQYPYPY 296
HG ++PP+ + P P G P PP P A P R G+ P
Sbjct: 250 HGGVVPPYFEESKGYEPPPAPSGGSPAPPGDDRPEAKPEPGPVEDGAPGRETGGEGEGPE 309
Query: 297 PQYPTHPYYGNAYPYPQHM--NAGRPPHYPPHPGSQHPHQNCAHP 339
P G P P +A RP +P P A P
Sbjct: 310 PAGRDGAAGGEPKPGPPRPAPDADRPEGWPSLEAITFPPPTPATP 354
>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional.
Length = 475
Score = 30.7 bits (69), Expect = 1.4
Identities = 12/60 (20%), Positives = 17/60 (28%), Gaps = 2/60 (3%)
Query: 240 PPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQY 299
P A P P P + P P A +P +P + P P +
Sbjct: 16 QPAPAPPSPAAAPAPPPPAKTAAPATK--AAAPAAAAPRAEKPKKDKPRRERKPKPASLW 73
Score = 30.3 bits (68), Expect = 1.9
Identities = 13/46 (28%), Positives = 16/46 (34%)
Query: 246 GHGAMLPPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQ 291
G G P P P SP+ P P A+ P A P +
Sbjct: 10 GKGEAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEK 55
Score = 28.3 bits (63), Expect = 6.7
Identities = 13/67 (19%), Positives = 20/67 (29%)
Query: 240 PPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQY 299
P P PP + +P+ A P + P +P R P + +
Sbjct: 19 PAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASLWKLEDF 78
Query: 300 PTHPYYG 306
P G
Sbjct: 79 VVEPQEG 85
>gnl|CDD|180700 PRK06800, fliH, flagellar assembly protein H; Validated.
Length = 228
Score = 30.2 bits (68), Expect = 1.6
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 145 LKRQVQSLTMHQKKLEAELQQIE---EKFEAKKRKFVESSEQFQEELK 189
+++ + L QK L EL Q+ +K E ++++ + EQFQE ++
Sbjct: 36 IQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQ 83
>gnl|CDD|220441 pfam09849, DUF2076, Uncharacterized protein conserved in bacteria
(DUF2076). This domain, found in various hypothetical
prokaryotic proteins, has no known function. The domain,
however, is found in various periplasmic ligand-binding
sensor proteins.
Length = 234
Score = 30.0 bits (68), Expect = 1.6
Identities = 14/57 (24%), Positives = 14/57 (24%)
Query: 252 PPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNA 308
G SG G G P PPP RP G P Y
Sbjct: 75 QSQSSGGFLSGMFGGGAPRPPPAAPAVQPPAPPARPGWGSGGPSQQGAGQQPGYAQP 131
>gnl|CDD|133417 cd04790, HTH_Cfa-like_unk, Helix-Turn-Helix DNA binding domain of
putative Cfa-like transcription regulators. Putative
helix-turn-helix (HTH) MerR-like transcription
regulator; conserved, Cfa-like, unknown proteins (~172
a.a.). The N-terminal domain of these proteins appears
to be related to the HTH domain of Cfa, a cyclopropane
fatty acid synthase. These Cfa-like proteins have a
unique C-terminal domain with conserved histidines
(motif HXXFX7HXXF). Based on sequence similarity of the
N-terminal domains, these proteins are predicted to
function as transcription regulators that mediate
responses to stress in eubacteria. They belong to the
MerR superfamily of transcription regulators that
promote transcription of various stress regulons by
reconfiguring the operator sequence located between the
-35 and -10 promoter elements. A typical MerR regulator
is comprised of distinct domains that harbor the
regulatory (effector-binding) site and the active
(DNA-binding) site. Their N-terminal domains are
homologous and contain a DNA-binding winged HTH motif,
while the C-terminal domains are often dissimilar and
bind specific coactivator molecules such as metal ions,
drugs, and organic substrates.
Length = 172
Score = 29.7 bits (67), Expect = 1.7
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 131 PDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190
D + V R+ L R++Q L Q+ + L+Q K+++ V + E++ LK
Sbjct: 72 GDDATDVLRRRLAELNREIQRLRQQQRAIATLLKQPTLL---KEQRLV-TKEKWVAILKA 127
Query: 191 PGM 193
GM
Sbjct: 128 AGM 130
>gnl|CDD|225887 COG3351, FlaD, Putative archaeal flagellar protein D/E [Cell
motility and secretion].
Length = 214
Score = 29.8 bits (67), Expect = 1.7
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 151 SLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKKPGMG--PEGYL 199
SL +E E+ + E+ K ++ + S +EE KK + PE +
Sbjct: 56 SLIEKVDSIEEEISEKEKVMSEKLKEPAQMSSTSEEEEKKAKLEEIPEDVV 106
>gnl|CDD|173288 PRK14827, PRK14827, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 296
Score = 29.9 bits (67), Expect = 1.8
Identities = 18/61 (29%), Positives = 22/61 (36%), Gaps = 8/61 (13%)
Query: 271 PPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHYPPHPGSQ 330
P P YP P +P +P+ P PY G P PQH + P P
Sbjct: 18 PAPDDYPTF-------PDKSTWPVVFPELPPAPYGGPCRP-PQHTSKAAAPRIPADRLPN 69
Query: 331 H 331
H
Sbjct: 70 H 70
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional.
Length = 333
Score = 30.0 bits (68), Expect = 1.8
Identities = 18/97 (18%), Positives = 20/97 (20%), Gaps = 6/97 (6%)
Query: 237 VHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQYPGASQ-PLAPRPPHGQYPYP 295
VH + P P PY Q Q P A PP
Sbjct: 68 VHRVNHAPANAQEHEAARPSPQHQ-----YQPPYASAQPRQPVQQPPEAQVPPQHAPRPA 122
Query: 296 YPQYPTHPYYGNAYPYPQHMNAGRPPHYPPHPGSQHP 332
P Q + P P P H
Sbjct: 123 QPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHS 159
>gnl|CDD|216078 pfam00716, Peptidase_S21, Assemblin (Peptidase family S21).
Length = 326
Score = 30.1 bits (68), Expect = 1.8
Identities = 25/120 (20%), Positives = 29/120 (24%), Gaps = 22/120 (18%)
Query: 208 LTAPVSAQGPPPGPS-VPPMHGGQTGPVATVHHPP----PSQGGHGAMLPPHPRPGSPSG 262
L A S V GG V+ P PS G L P PG+ S
Sbjct: 206 LKASESPGLTAACHDEVVASKGGNDRGVSPGTAPSFDATPSVSPSGQPLSPAAPPGTSSV 265
Query: 263 YPGAGG--PYPPPQQY--------------PGASQPLAPRPPH-GQYPYPYPQYPTHPYY 305
A P +QP P+ P P P P
Sbjct: 266 AGTALSASPAALFGDMVYVPLDAYNQLLAGQAFNQPPDPQGPAPPAELAPPAPAPPPPAN 325
>gnl|CDD|226371 COG3853, TelA, Uncharacterized protein involved in tellurite
resistance [Inorganic ion transport and metabolism].
Length = 386
Score = 30.0 bits (68), Expect = 1.8
Identities = 9/73 (12%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
Query: 122 NEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAK----KRKF 177
+E+ D+ + ++ + L++ + + + ++LE E+ + +
Sbjct: 158 DELTRDNKMLELLYEKNREYFEHLEKYIAAGELKDEELETEIIPELKTKAESGNQMDVQQ 217
Query: 178 VESSEQFQEELKK 190
V F L++
Sbjct: 218 VNELTLFINRLEQ 230
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 30.6 bits (70), Expect = 1.8
Identities = 9/86 (10%), Positives = 14/86 (16%), Gaps = 8/86 (9%)
Query: 210 APVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGP 269
+A + A P+ P P +P+ P
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPA--------PAPPAAAAPAAPPKPAAA 89
Query: 270 YPPPQQYPGASQPLAPRPPHGQYPYP 295
A P
Sbjct: 90 AAAAAAPAAPPAAAAAAAPAAAAVED 115
>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP). This family
contains bacterial fibronectin-attachment proteins
(FAP). Family members are rich in alanine and proline,
are approximately 300 long, and seem to be restricted to
mycobacteria. These proteins contain a
fibronectin-binding motif that allows mycobacteria to
bind to fibronectin in the extracellular matrix.
Length = 297
Score = 29.9 bits (67), Expect = 1.9
Identities = 24/83 (28%), Positives = 28/83 (33%), Gaps = 6/83 (7%)
Query: 207 VLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGA 266
+ P +A P P PP T A PP A P P + + P
Sbjct: 30 AIALPATANADPAPPPPPP----STAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPP 85
Query: 267 GGP--YPPPQQYPGASQPLAPRP 287
P PPP P A P AP P
Sbjct: 86 ADPNAPPPPPVDPNAPPPPAPEP 108
>gnl|CDD|224300 COG1382, GimC, Prefoldin, chaperonin cofactor [Posttranslational
modification, protein turnover, chaperones].
Length = 119
Score = 28.8 bits (65), Expect = 2.0
Identities = 10/29 (34%), Positives = 23/29 (79%)
Query: 139 TNRMQVLKRQVQSLTMHQKKLEAELQQIE 167
++Q L++Q+Q + + +++LEA+L++IE
Sbjct: 12 LAQLQQLQQQLQKVILQKQQLEAQLKEIE 40
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 30.4 bits (69), Expect = 2.0
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 133 VRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFV-ESSEQFQEEL 188
RS+ R +LK++ L Q+ AE Q E K + K + + + + E+
Sbjct: 852 GRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQELKIDVKSISSLKLVNLELESEI 908
>gnl|CDD|218899 pfam06102, DUF947, Domain of unknown function (DUF947). Family of
eukaryotic proteins with unknown function.
Length = 168
Score = 29.2 bits (66), Expect = 2.0
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 11/57 (19%)
Query: 145 LKRQVQSLT----------MHQKKLEAELQQIEEKF-EAKKRKFVESSEQFQEELKK 190
LKR +QS+ ++ L+ +Q +E E KK +++ SE + LKK
Sbjct: 84 LKRTLQSMKSRLKTLKNKDREREILKEHKKQEKELIKEGKKPYYLKKSEIKKLVLKK 140
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106). This
family of proteins are found in large numbers in the
Trichomonas vaginalis proteome. The function of this
protein is unknown.
Length = 422
Score = 30.0 bits (67), Expect = 2.1
Identities = 23/96 (23%), Positives = 28/96 (29%), Gaps = 14/96 (14%)
Query: 248 GAMLPPHP-----RPGSPSGYPGAGGPY----PPPQQYPGASQPLAPRPPHGQYPYPYPQ 298
G +PP+P PG P + + G P P Q P P P Q
Sbjct: 169 GTYIPPNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQ 228
Query: 299 YPTHPYYGNAYPYPQHMNAGRPPHYPPHPGSQHPHQ 334
P P PQ+ P PP H
Sbjct: 229 PQQQPVQPAQQPTPQN-----PAQQPPQTEQGHKRS 259
Score = 30.0 bits (67), Expect = 2.2
Identities = 24/98 (24%), Positives = 29/98 (29%), Gaps = 9/98 (9%)
Query: 255 PRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHG--------QYPYPYPQYPT-HPYY 305
P G+ G P PP++ P P HG P Q P P
Sbjct: 159 PAGGTYILASGTYIPPNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTV 218
Query: 306 GNAYPYPQHMNAGRPPHYPPHPGSQHPHQNCAHPETGQ 343
N PQ +P P Q+P Q E G
Sbjct: 219 QNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQGH 256
>gnl|CDD|223771 COG0699, COG0699, Predicted GTPases (dynamin-related) [General
function prediction only].
Length = 546
Score = 30.3 bits (68), Expect = 2.1
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 130 VPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELK 189
V + N+ + L ++ + ++ ++LE EL + E+ + EQF E LK
Sbjct: 483 VLKAIFELLKNKRKRLAQKQRLKRLYLEQLEDELLRTAEEILELRLL----LEQFLEALK 538
Query: 190 K 190
Sbjct: 539 L 539
>gnl|CDD|202045 pfam01920, Prefoldin_2, Prefoldin subunit. This family includes
prefoldin subunits that are not detected by pfam02996.
Length = 106
Score = 28.4 bits (64), Expect = 2.2
Identities = 13/72 (18%), Positives = 31/72 (43%), Gaps = 19/72 (26%)
Query: 119 RLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFV 178
+LI ++ +V+ + ++ LE E++ +E++ E +++
Sbjct: 49 KLIGDVLVKQDKEEVKEELEER---------------KETLEKEIKTLEKQLEKLEKEL- 92
Query: 179 ESSEQFQEELKK 190
E+ +EEL K
Sbjct: 93 ---EELKEELYK 101
>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily. This
subfamily of the AAA family ATPases includes two members
each from three archaeal species. It also includes yeast
CDC48 (cell division control protein 48) and the human
ortholog, transitional endoplasmic reticulum ATPase
(valosin-containing protein). These proteins in
eukaryotes are involved in the budding and transfer of
membrane from the transitional endoplasmic reticulum to
the Golgi apparatus.
Length = 733
Score = 30.3 bits (68), Expect = 2.2
Identities = 13/62 (20%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 132 DVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKKP 191
D+ +V M L+ + S ++KLE ++ + + + R F+E+ ++ + + K
Sbjct: 660 DIEAVCREAAMAALRESIGSPA--KEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVSKE 717
Query: 192 GM 193
M
Sbjct: 718 DM 719
>gnl|CDD|218681 pfam05667, DUF812, Protein of unknown function (DUF812). This
family consists of several eukaryotic proteins of
unknown function.
Length = 536
Score = 30.1 bits (68), Expect = 2.2
Identities = 33/174 (18%), Positives = 66/174 (37%), Gaps = 29/174 (16%)
Query: 34 ENNFSEYE--KNLKAYHNSPQYLAYMAAKAKGKQAQQAAEEREAQAQGFSGKN-ADRRID 90
E+N S + + NS Y K + + A R+A G +G + AD D
Sbjct: 162 ESNSSRLSFAQEWRLEWNSQGLEDYRKRKRQRLDQKAAEYLRQAAQAGTTGSSSADDLAD 221
Query: 91 IQPAEDEDEQEDGYSVKHVAYARYLRNHRLINEIFSDSVVP-------DVRSVVTTNRMQ 143
+ D + G +R+ R ++ + + VP + R+ ++
Sbjct: 222 LLSKFRLDSWDKG--------SRFTRTEKVEQAATAAAEVPPAEMDTEEDRTKEREAELE 273
Query: 144 VLKRQVQSLTM-------HQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190
L+ Q+ L K L ++++Q+ E+ + + +E+ +EE K
Sbjct: 274 ALQEQIDELESSIEEVLSEIKALASKIKQVNEELTTVR----QENEELEEEYKI 323
>gnl|CDD|219897 pfam08549, SWI-SNF_Ssr4, Fungal domain of unknown function
(DUF1750). This is a fungal domain of unknown function.
Length = 669
Score = 30.0 bits (67), Expect = 2.3
Identities = 16/52 (30%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 241 PPSQGGHGAMLPPHPRP----GSPSGYPGAGGPYPPPQQYPGASQPLAPRPP 288
PP G PP P P G YP G PP++ G P R
Sbjct: 205 PPQMAGQSMYQPPGPYPNAMVGRQPFYPQPGAVAGPPKRRGGHKAPRGHRAS 256
Score = 28.5 bits (63), Expect = 6.6
Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 291 QYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHYPPHPG 328
P P PQ Y PYP M GR P + P PG
Sbjct: 201 TIPLP-PQMAGQSMYQPPGPYPNAM-VGRQP-FYPQPG 235
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation factor
3 (eIF3). In yeast it is called Hcr1. The Saccharomyces
cerevisiae protein eIF3j (HCR1) has been shown to be
required for processing of 20S pre-rRNA and binds to 18S
rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 29.6 bits (67), Expect = 2.3
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 58 AAKAKGK-QAQQAAEEREAQAQGFSGKNADRRIDIQPAEDEDEQE 101
AAKAK K + EE+E + K + P ++ E+
Sbjct: 53 AAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKL 97
>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and
modification].
Length = 2365
Score = 30.3 bits (68), Expect = 2.3
Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 258 GSPSGYPGAGGPYPPPQQYPGASQPLAPRPP 288
P G P P PPP + SQP P PP
Sbjct: 3 SLPPGNPP---PPPPPPGFEPPSQPPPPPPP 30
>gnl|CDD|217834 pfam03998, Utp11, Utp11 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 239
Score = 29.6 bits (67), Expect = 2.4
Identities = 11/86 (12%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 94 AEDEDEQEDGYSVKHV-AYARYLRNH--RLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQ 150
+DE+EQ+ ++ L R + + D + + + + ++ +
Sbjct: 128 VDDEEEQKSFDPAEYFDTTPELLDRRENRPRISQLEKTSLVDEKQKKKSAKKK--RKLYK 185
Query: 151 SLTMHQKKLEAELQQIEEKFEAKKRK 176
L +++ + +L+++E++ E ++
Sbjct: 186 ELKERKEREK-KLKKVEQRLELQREL 210
>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 576
Score = 30.1 bits (68), Expect = 2.4
Identities = 21/73 (28%), Positives = 23/73 (31%), Gaps = 8/73 (10%)
Query: 248 GAMLPPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGN 307
GA PP G+P+ A PPP P AP P P P P P
Sbjct: 380 GAPAPPSAAWGAPTPAAPAA---PPPAAAPPVPPA-APARPAAARPAPAPAPPAAA---- 431
Query: 308 AYPYPQHMNAGRP 320
A P A
Sbjct: 432 APPARSADPAAAA 444
Score = 28.9 bits (65), Expect = 5.0
Identities = 18/71 (25%), Positives = 21/71 (29%), Gaps = 5/71 (7%)
Query: 220 GPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQYPGA 279
P+ P G P A PPP+ A P P P+ A P PP P A
Sbjct: 381 APAPPSAAWGAPTPAAPAA-PPPA----AAPPVPPAAPARPAAARPAPAPAPPAAAAPPA 435
Query: 280 SQPLAPRPPHG 290
Sbjct: 436 RSADPAAAASA 446
Score = 28.9 bits (65), Expect = 5.0
Identities = 17/63 (26%), Positives = 19/63 (30%), Gaps = 4/63 (6%)
Query: 267 GGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHYPPH 326
G P PP + GA P AP P P A P P A PP
Sbjct: 380 GAPAPPSAAW-GAPTPAAPAAPP-PAAAPPVPPAAPARPAAARPAP--APAPPAAAAPPA 435
Query: 327 PGS 329
+
Sbjct: 436 RSA 438
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 29.7 bits (68), Expect = 2.4
Identities = 14/50 (28%), Positives = 31/50 (62%), Gaps = 8/50 (16%)
Query: 141 RMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190
+ + L R+++ L +K E EL++ E++ E K+++ E+ +EEL++
Sbjct: 94 KEENLDRKLELL----EKREEELEKKEKELEQKQQEL----EKKEEELEE 135
>gnl|CDD|223041 PHA03321, PHA03321, tegument protein VP11/12; Provisional.
Length = 694
Score = 29.9 bits (67), Expect = 2.4
Identities = 31/118 (26%), Positives = 34/118 (28%), Gaps = 35/118 (29%)
Query: 214 AQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYP------GAG 267
+ PPG P + PPP PP RPGS A
Sbjct: 426 SSRQPPGAPAPRRD----------NDPPP---------PPRARPGSTPACARRARAQRAR 466
Query: 268 GPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHYPP 325
P GA + L P G P P P P Y M G PP PP
Sbjct: 467 DAGPEYVDPLGALRRL----PAGAAPPPEPAAAPSP-----ATYYTRM-GGGPPRLPP 514
>gnl|CDD|221408 pfam12072, DUF3552, Domain of unknown function (DUF3552). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria, archaea and eukaryotes.
This domain is about 200 amino acids in length. This
domain is found associated with pfam00013, pfam01966.
This domain has a single completely conserved residue A
that may be functionally important.
Length = 201
Score = 29.4 bits (67), Expect = 2.5
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQE 186
+ + L+++ +SL +K+L A QQ+EEK E + + +E EQ QE
Sbjct: 96 RKDESLEKKEESLEEKEKELAARQQQLEEK-EEELEELIE--EQQQE 139
Score = 29.0 bits (66), Expect = 2.7
Identities = 12/46 (26%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 145 LKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190
L R+ +SL +K E L++ E++ A++++ E E+ +E +++
Sbjct: 94 LDRKDESL----EKKEESLEEKEKELAARQQQLEEKEEELEELIEE 135
>gnl|CDD|153289 cd07605, I-BAR_IMD, Inverse (I)-BAR, also known as the IRSp53/MIM
homology Domain (IMD), a dimerization module that binds
and bends membranes. Inverse (I)-BAR (or IMD) is a
member of the Bin/Amphiphysin/Rvs (BAR) domain family.
It is a dimerization and lipid-binding module that bends
membranes and induces membrane protrusions in the
opposite direction compared to classical BAR and F-BAR
domains, which produce membrane invaginations. IMD
domains are found in Insulin Receptor tyrosine kinase
Substrate p53 (IRSp53), Missing in Metastasis (MIM), and
Brain-specific Angiogenesis Inhibitor 1-Associated
Protein 2-like (BAIAP2L) proteins. These are
multi-domain proteins that act as scaffolding proteins
and transducers of a variety of signaling pathways that
link membrane dynamics and the underlying actin
cytoskeleton. Most members contain an N-terminal IMD, an
SH3 domain, and a WASP homology 2 (WH2) actin-binding
motif at the C-terminus, exccept for MIM which does not
carry an SH3 domain. Some members contain additional
domains and motifs. The IMD domain binds and bundles
actin filaments, binds membranes and produces membrane
protrusions, and interacts with the small GTPase Rac.
Length = 223
Score = 29.3 bits (66), Expect = 2.5
Identities = 13/66 (19%), Positives = 31/66 (46%), Gaps = 10/66 (15%)
Query: 135 SVVTTNRMQVLKRQVQSLTMH-------QKKLEAE---LQQIEEKFEAKKRKFVESSEQF 184
+V T++ + + H +KKLE + + + E+ ++ + ++ E ++
Sbjct: 72 QIVDTHKSIEASLEQVAKAFHGELILPLEKKLELDQKVINKFEKDYKKEYKQKREDLDKA 131
Query: 185 QEELKK 190
+ ELKK
Sbjct: 132 RSELKK 137
>gnl|CDD|222649 pfam14284, PcfJ, PcfJ-like protein. The PcfJ-like protein family
includes the E. faecalis PcfJ protein, which is
functionally uncharacterized. It is found in bacteria
and viruses, and is typically between 159 and 170 amino
acids in length. There is a conserved HCV sequence
motif.
Length = 169
Score = 29.2 bits (66), Expect = 2.5
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 11/55 (20%)
Query: 144 VLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKF-----------VESSEQFQEE 187
V K Q + +K+ ++E+ F K KF ES ++ +E
Sbjct: 35 VAKYQAKKEKEKAEKMRKRYPELEKIFRELKSKFEFTDGDYVVRVPESVQEIIDE 89
>gnl|CDD|238453 cd00890, Prefoldin, Prefoldin is a hexameric molecular chaperone
complex, found in both eukaryotes and archaea, that
binds and stabilizes newly synthesized polypeptides
allowing them to fold correctly. The complex contains
two alpha and four beta subunits, the two subunits being
evolutionarily related. In archaea, there is usually
only one gene for each subunit while in eukaryotes there
two or more paralogous genes encoding each subunit
adding heterogeneity to the structure of the hexamer.
The structure of the complex consists of a double beta
barrel assembly with six protruding coiled-coils.
Length = 129
Score = 28.5 bits (64), Expect = 2.5
Identities = 7/28 (25%), Positives = 20/28 (71%)
Query: 145 LKRQVQSLTMHQKKLEAELQQIEEKFEA 172
LK+++++L +KLE +L++++++
Sbjct: 92 LKKRLETLEKQIEKLEKQLEKLQDQITE 119
>gnl|CDD|227448 COG5118, BDP1, Transcription initiation factor TFIIIB, Bdp1 subunit
[Transcription].
Length = 507
Score = 29.7 bits (66), Expect = 2.6
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 158 KLEAELQQIEEKFEAKKRKFVESSEQFQ----EELKKPGMGP 195
+L+ E + ++ E K E + Q L K G G
Sbjct: 445 ELQNEHKHHMKEIEEAKNTAKEEDQTAQRLNDANLNKKGSGG 486
>gnl|CDD|206034 pfam13863, DUF4200, Domain of unknown function (DUF4200). This
family is found in eukaryotes. It is a coiled-coil
domain of unknwon function.
Length = 126
Score = 28.3 bits (64), Expect = 2.7
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 139 TNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQE 186
++ LK +++ L +KLE +L++ + +E VE S +F+E
Sbjct: 80 EEEIKELKAELEELKAEIEKLEEKLEEY-QPYEEFLESVVERSPEFEE 126
>gnl|CDD|221818 pfam12868, DUF3824, Domain of unknwon function (DUF3824). This is
a repeating domain found in fungal proteins. It is
proline-rich, and the function is not known.
Length = 135
Score = 28.7 bits (64), Expect = 2.8
Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 271 PPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHYPPHPGSQ 330
+ Y P +P +Y YP Y P P P P YPP PG+
Sbjct: 49 SYEEPYDPTPYPPSPPVSDPRY-YPNSNYFPPPPGSTPVPPPGPQPGYNPADYPPPPGAV 107
Query: 331 HPHQNCAHP 339
P QN +P
Sbjct: 108 PPPQNYPYP 116
Score = 27.9 bits (62), Expect = 4.9
Identities = 30/79 (37%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 217 PPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPG-SPSGYPGAGGPYPPPQQ 275
P P P PP+ + P + PPP G + PP P+PG +P+ YP G PPPQ
Sbjct: 56 PTPYPPSPPVSDPRYYPNSNYFPPPP---GSTPVPPPGPQPGYNPADYPPPPGAVPPPQN 112
Query: 276 YPGASQP----LAPRPPHG 290
YP P APRP
Sbjct: 113 YPYPPGPGQDPYAPRPRRA 131
>gnl|CDD|220222 pfam09403, FadA, Adhesion protein FadA. FadA (Fusobacterium
adhesin A) is an adhesin which forms two alpha helices.
Length = 126
Score = 28.3 bits (63), Expect = 2.8
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 150 QSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190
Q + K LEAE Q + +K EA+ + + E ++E+++
Sbjct: 23 QEVMSELKNLEAEYQALMQKEEARFEEEKQEKETAEKEVQE 63
>gnl|CDD|221919 pfam13094, CENP-Q, CENP-A-nucleosome distal (CAD) centromere
subunit. CENP-Q is one of the components that assembles
onto the CENP-A-nucleosome distal (CAD) centromere. The
centromere, which is the basic element of chromosome
inheritance, is epigenetically determined in mammals.
CENP-A, the centromere-specific histone H3 variant,
assembles an array of nucleosomes and it is this that
seems to be the prime candidate for specifying
centromere identity. CENP-A nucleosomes directly recruit
a proximal CENP-A nucleosome associated complex (NAC)
comprised of CENP-M, CENP-N and CENP-T, CENP-U(50),
CENP-C and CENP-H. Assembly of the CENP-A NAC at
centromeres is dependent on CENP-M, CENP-N and CENP-T.
Additionally, there are seven other subunits which make
up the CENP-A-nucleosome distal (CAD) centromere,
CENP-K, CENP-L, CENP-O, CENP-P, CENP-Q, CENP-R and
CENP-S, also assembling on the CENP-A NAC. Fta7 is the
equivalent component of the fission yeast Sim4 complex.
Length = 159
Score = 28.9 bits (65), Expect = 2.9
Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 4/91 (4%)
Query: 139 TNRMQVLKRQVQSLTMHQKKLEAELQQIE---EKFEAKKRKFVESSEQFQEELKKPGMGP 195
R + L+RQ+ + + LE E+++ E EK ++ ++++ + E ++
Sbjct: 26 LRRKRALERQLAAELKQLELLEEEIRREEAELEKDLEYLQELEKNAKALEREREEESKNL 85
Query: 196 EGYLNRLSASPVLTAPVSAQGPPPGPSVPPM 226
L RL S VL Q S
Sbjct: 86 HPVL-RLLESEVLEENELLQDSLLELSERNF 115
>gnl|CDD|216447 pfam01346, FKBP_N, Domain amino terminal to FKBP-type
peptidyl-prolyl isomerase. This family is only found at
the amino terminus of pfam00254. This domain is of
unknown function.
Length = 124
Score = 28.3 bits (64), Expect = 3.1
Identities = 23/97 (23%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 98 DEQEDGYSVKHVAYARYLRNHRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQS-LTMHQ 156
D+ + Y++ + RYL+ ++ D+++ ++ + +++ ++Q L Q
Sbjct: 21 DKDKLSYAIG-ASLGRYLKQQ-GEEQLDKDALLQGLQDALAGKELKLTDEEIQKALQAFQ 78
Query: 157 KKLEAELQQIEEKFEAKKRKFVESSEQFQEE-LKKPG 192
KKL+A+ QQ + + +A++ K + E F E KK G
Sbjct: 79 KKLQAK-QQAKAEKKAEENK--AAGEAFLAENAKKEG 112
>gnl|CDD|227760 COG5473, COG5473, Predicted integral membrane protein [Function
unknown].
Length = 290
Score = 29.3 bits (66), Expect = 3.3
Identities = 12/66 (18%), Positives = 14/66 (21%), Gaps = 4/66 (6%)
Query: 239 HPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYP-PPQQYPGASQPL-APRPPHGQYPYPY 296
HP P + +G Y P Q L A G P Y
Sbjct: 1 HPGNGADPQRGNAGAGFHPPAGAGETPPPPGYRKIPGQDL--FDGLRAGPDDFGPKPSHY 58
Query: 297 PQYPTH 302
Sbjct: 59 VFLCLI 64
>gnl|CDD|218782 pfam05859, Mis12, Mis12 protein. Kinetochores are the chromosomal
sites for spindle interaction and play a vital role in
chromosome segregation. Fission yeast kinetochore
protein Mis12, is required for correct spindle
morphogenesis, determining metaphase spindle length.
Thirty-five to sixty percent extension of metaphase
spindle length takes place in Mis12 mutants. It has been
shown that Mis12 genetically interacts with Mal2,
another inner centromere core complex protein in S.
pombe.
Length = 141
Score = 28.4 bits (64), Expect = 3.4
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 154 MHQKKLEAELQQIEEKFEA-----KKRKFVESSEQFQEELKK 190
H LE ++E+ E + +E ++ Q ELKK
Sbjct: 99 YHYDDLELTKAKLEQDLELDAELEQALAELEEQKKLQAELKK 140
>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1. This region is found
in some of the Diaphanous related formins (Drfs). It
consists of low complexity repeats of around 12
residues.
Length = 160
Score = 28.8 bits (64), Expect = 3.4
Identities = 32/102 (31%), Positives = 36/102 (35%), Gaps = 6/102 (5%)
Query: 202 LSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGS-- 259
+ P L + PPP P V + P AT PPP G + PP P PG
Sbjct: 36 IPPPPPLPGGAAIPPPPPLPGVAGIPPPPPLPGATAIPPPPPLPGAAGIPPPPPLPGGAG 95
Query: 260 ----PSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYP 297
P PG PPP G P P P G P P
Sbjct: 96 IPPPPPPLPGGAAVPPPPPLPGGPGVPPPPPPFPGAPGIPPP 137
Score = 28.0 bits (62), Expect = 5.3
Identities = 44/129 (34%), Positives = 48/129 (37%), Gaps = 6/129 (4%)
Query: 206 PVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPG-----SP 260
P L V PPP P + P T PPP G A+ PP P PG P
Sbjct: 4 PPLPGGVGIPPPPPLPGGVCIPPPPPLPGGTGIPPPPPLPGGAAIPPPPPLPGVAGIPPP 63
Query: 261 SGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRP 320
PGA PPP PGA+ P P G P P P P P G P
Sbjct: 64 PPLPGATA-IPPPPPLPGAAGIPPPPPLPGGAGIPPPPPPLPGGAAVPPPPPLPGGPGVP 122
Query: 321 PHYPPHPGS 329
P PP PG+
Sbjct: 123 PPPPPFPGA 131
>gnl|CDD|219914 pfam08577, PI31_Prot_C, PI31 proteasome regulator. PI31 is a
cellular regulator of proteasome formation and of
proteasome-mediated antigen processing.
Length = 68
Score = 26.9 bits (60), Expect = 3.5
Identities = 20/62 (32%), Positives = 21/62 (33%), Gaps = 9/62 (14%)
Query: 218 PPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQYP 277
PPG P P G G M+ RPG G GG PPP P
Sbjct: 9 PPGLGPPDPFDP--------LPAPLGGNGQGGMIFDPNRPG-FGPPRGGGGDGPPPGVPP 59
Query: 278 GA 279
GA
Sbjct: 60 GA 61
>gnl|CDD|236781 PRK10869, PRK10869, recombination and repair protein; Provisional.
Length = 553
Score = 29.5 bits (67), Expect = 3.6
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 9/50 (18%)
Query: 38 SEYEKN-LKAYHNSPQYLAYMAAK--------AKGKQAQQAAEEREAQAQ 78
E++K L AY N L M A Q QQ ++ER A+ Q
Sbjct: 139 PEHQKTLLDAYANETSLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQ 188
>gnl|CDD|147759 pfam05782, ECM1, Extracellular matrix protein 1 (ECM1). This
family consists of several eukaryotic extracellular
matrix protein 1 (ECM1) sequences. ECM1 has been shown
to regulate endochondral bone formation, stimulate the
proliferation of endothelial cells and induce
angiogenesis. Mutations in the ECM1 gene can cause
lipoid proteinosis, a disorder which causes generalised
thickening of skin, mucosae and certain viscera.
Classical features include beaded eyelid papules and
laryngeal infiltration leading to hoarseness.
Length = 419
Score = 29.2 bits (65), Expect = 3.6
Identities = 31/134 (23%), Positives = 37/134 (27%), Gaps = 17/134 (12%)
Query: 208 LTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAG 267
L + G PS P T H PP +G PP SP P
Sbjct: 38 LFQHLQEVGYAAPPSPPLSRRLPVDHPVTSQHDPPFEGQSEVQPPP-----SPEDIPVYE 92
Query: 268 GPYPPPQQYPGASQPLAPRPPHG---QYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHYP 324
+P P + P Q P PQ P P P
Sbjct: 93 EDWPTFLN-PNVDKAGPAVPQEAIPLQKELPPPQVPIEQKEVKPAPLADQS--------P 143
Query: 325 PHPGSQHPHQNCAH 338
P P S +P Q+C
Sbjct: 144 PEPESWNPAQHCQQ 157
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal
dynein light chain proteins play a dynamic role in
flagellar and cilia motility. Eukaryotic cilia and
flagella are complex organelles consisting of a core
structure, the axoneme, which is composed of nine
microtubule doublets forming a cylinder that surrounds a
pair of central singlet microtubules. This
ultra-structural arrangement seems to be one of the most
stable micro-tubular assemblies known and is responsible
for the flagellar and ciliary movement of a large number
of organisms ranging from protozoan to mammals. This
light chain interacts directly with the N-terminal half
of the heavy chains.
Length = 189
Score = 28.7 bits (65), Expect = 3.6
Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 141 RMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEE---LKK 190
++ L+ + + L +LEA+L+ IE++ E +++ ++ +E LKK
Sbjct: 128 EIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQ---IEEKRHADEIAFLKK 177
>gnl|CDD|221776 pfam12795, MscS_porin, Mechanosensitive ion channel porin domain.
The small mechanosensitive channel, MscS, is a part of
the turgor-driven solute efflux system that protects
bacteria from lysis in the event of osmotic shock. The
MscS protein alone is sufficient to form a functional
mechanosensitive channel gated directly by tension in
the lipid bilayer. The MscS proteins are heptamers of
three transmembrane subunits with seven converging M3
domains, and this MscS_porin is towards the N-terminal
of the molecules. The high concentration of negative
charges at the extracellular entrance of the pore helps
select the cations for efflux.
Length = 239
Score = 28.8 bits (65), Expect = 3.7
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 139 TNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKKP 191
NR ++L+ Q L ++LEAELQ ++ K+ SEQ EE ++
Sbjct: 176 NNRQELLRLQRDLLKKRIERLEAELQALQNAINRKRLA---ESEQAVEEAERL 225
>gnl|CDD|183966 PRK13309, ureC, urease subunit alpha; Reviewed.
Length = 572
Score = 29.5 bits (66), Expect = 3.8
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 11 SRQLQANCYGQSIGGCSKIPQCNENNFSEYEKNLKAYHNSPQY 53
SRQ A +G + G KI + N F E EK+L+ Y + Y
Sbjct: 5 SRQEYAGLFGPTTG--DKIRLGDTNLFIEIEKDLRGYGDESVY 45
>gnl|CDD|234107 TIGR03101, hydr2_PEP, exosortase A system-associated hydrolase 2.
This group of proteins are members of the alpha/beta
hydrolase superfamily. These proteins are generally
found in genomes containing the exosortase/PEP-CTERM
protein expoert system , specifically the type 1 variant
of this system described by the Genome Property
GenProp0652. When found in this context they are
invariably present in the vicinity of a second,
relatively unrelated enzyme (ortholog 1, TIGR03100) of
the same superfamily.
Length = 266
Score = 29.0 bits (65), Expect = 3.8
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 229 GQTGPVATVHHPPPSQGGHGAMLPPHP 255
G ++HPP + G G ++ P
Sbjct: 7 APHGFRFCLYHPPVAVGPRGVVIYLPP 33
>gnl|CDD|218661 pfam05622, HOOK, HOOK protein. This family consists of several
HOOK1, 2 and 3 proteins from different eukaryotic
organisms. The different members of the human gene
family are HOOK1, HOOK2 and HOOK3. Different domains
have been identified in the three human HOOK proteins,
and it was demonstrated that the highly conserved
NH2-domain mediates attachment to microtubules, whereas
the central coiled-coil motif mediates homodimerisation
and the more divergent C-terminal domains are involved
in binding to specific organelles (organelle-binding
domains). It has been demonstrated that endogenous HOOK3
binds to Golgi membranes, whereas both HOOK1 and HOOK2
are localised to discrete but unidentified cellular
structures. In mice the Hook1 gene is predominantly
expressed in the testis. Hook1 function is necessary for
the correct positioning of microtubular structures
within the haploid germ cell. Disruption of Hook1
function in mice causes abnormal sperm head shape and
fragile attachment of the flagellum to the sperm head.
Length = 713
Score = 29.4 bits (66), Expect = 3.9
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 13/46 (28%)
Query: 141 RMQV--LKRQVQSLTMHQK---------KLEAELQQIEEKFEAKKR 175
R Q+ KRQVQ L H K KLE E +++EEK EA ++
Sbjct: 362 RGQLETYKRQVQEL--HAKLSEESKKADKLEFEYKRLEEKLEALQK 405
>gnl|CDD|224023 COG1098, VacB, Predicted RNA binding protein (contains ribosomal
protein S1 domain) [Translation, ribosomal structure and
biogenesis].
Length = 129
Score = 28.0 bits (63), Expect = 3.9
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 13/59 (22%)
Query: 151 SLTMHQKKLEAELQQIEEK-----------FEAKKRKFVESSEQFQEELKKPGMGPEGY 198
SL++ +KLE E ++ K FE + ++ E+ LK+ G
Sbjct: 70 SLSI--RKLEEEPEKQHRKPRFSKSRPKEGFETLLSRLLKWIEESLSTLKRQTKKKRGG 126
>gnl|CDD|214832 smart00817, Amelin, Ameloblastin precursor (Amelin). This family
consists of several mammalian Ameloblastin precursor
(Amelin) proteins. Matrix proteins of tooth enamel
consist mainly of amelogenin but also of non-amelogenin
proteins, which, although their volumetric percentage is
low, have an important role in enamel mineralisation.
One of the non-amelogenin proteins is ameloblastin, also
known as amelin and sheathlin. Ameloblastin (AMBN) is
one of the enamel sheath proteins which is though to
have a role in determining the prismatic structure of
growing enamel crystals.
Length = 411
Score = 29.1 bits (65), Expect = 4.0
Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 2/86 (2%)
Query: 287 PPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHYPPHPGSQHPHQNCAHPETGQLVF 346
PPH +P+ P+ Y + P +P P PG + Q A P T Q
Sbjct: 71 PPHSSFPWLRPREHETQQYEYSLPVHPPPLPSQPSLQPQQPGLKPFLQPTALP-TNQATP 129
Query: 347 QEGVLAKAMRLGYWIILDELNLAPLP 372
Q+ M LG L + L +P
Sbjct: 130 QKNGPQPPMHLGQ-PPLQQAELPMIP 154
>gnl|CDD|177464 PHA02682, PHA02682, ORF080 virion core protein; Provisional.
Length = 280
Score = 29.1 bits (64), Expect = 4.1
Identities = 25/76 (32%), Positives = 29/76 (38%), Gaps = 4/76 (5%)
Query: 249 AMLPPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNA 308
A+ P P P P P PPP P ++P PP + P P PT A
Sbjct: 106 AVTCPAPAPACP---PATAPTCPPPAVCPAPARPAPACPPSTRQCPPAPPLPTPKPAPAA 162
Query: 309 YPYPQHMNAGRPPHYP 324
P H N PP YP
Sbjct: 163 KPIFLH-NQLPPPDYP 177
Score = 28.3 bits (62), Expect = 7.2
Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 3/86 (3%)
Query: 205 SPVLTAPVSAQGPPP--GPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSG 262
+P +T P A PP P+ PP PP ++ A P P+P +P+
Sbjct: 104 APAVTCPAPAPACPPATAPTCPPPAVCPAPARPAPACPPSTRQCPPAPPLPTPKP-APAA 162
Query: 263 YPGAGGPYPPPQQYPGASQPLAPRPP 288
P PP YP AS P P
Sbjct: 163 KPIFLHNQLPPPDYPAASCPTIETAP 188
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding
[General function prediction only].
Length = 239
Score = 28.9 bits (65), Expect = 4.1
Identities = 13/58 (22%), Positives = 31/58 (53%), Gaps = 9/58 (15%)
Query: 141 RMQVLKRQVQSLTMHQ--------KKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190
+Q+ K ++ SL + +KLE E++ ++E+ E ++ E+ + +EE+ +
Sbjct: 97 EIQIAKERINSL-EDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAE 153
Score = 28.1 bits (63), Expect = 7.9
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 135 SVVTTNRMQ-VLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEE 187
S V R L ++Q LE EL ++ E+ E +++ + E+ +
Sbjct: 83 SAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERL 136
>gnl|CDD|153280 cd07596, BAR_SNX, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting
Nexins. BAR domains are dimerization, lipid binding and
curvature sensing modules found in many different
proteins with diverse functions. Sorting nexins (SNXs)
are Phox homology (PX) domain containing proteins that
are involved in regulating membrane traffic and protein
sorting in the endosomal system. SNXs differ from each
other in their lipid-binding specificity, subcellular
localization and specific function in the endocytic
pathway. A subset of SNXs also contain BAR domains. The
PX-BAR structural unit determines the specific membrane
targeting of SNXs. BAR domains form dimers that bind to
membranes, induce membrane bending and curvature, and
may also be involved in protein-protein interactions.
Length = 218
Score = 28.9 bits (65), Expect = 4.1
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 114 YLRNHRLINEIFSDSV-----VPDVRSVVTTNRMQVLKRQVQSLTMHQK--KLEAELQQI 166
YLR + + E D + ++ + + + Q+ K + K +LE EL++
Sbjct: 98 YLRYCQAVKETLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEA 157
Query: 167 EEKFEAKKRKFVESSEQFQEELKK 190
E E ++++ E SE+ +EELK+
Sbjct: 158 ESALEEARKRYEEISERLKEELKR 181
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 29.4 bits (66), Expect = 4.1
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 146 KRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQ-FQEELKK 190
++ L Q+KL+ EL+Q E+ + ++R E+ QE LK
Sbjct: 531 NEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKA 576
>gnl|CDD|219053 pfam06482, Endostatin, Collagenase NC10 and Endostatin. NC10
stands for Non-helical region 10 and is taken from human
COL15A1. A mutation in this region in human COL18A1 is
associated with an increased risk of prostrate cancer.
This domain is cleaved from the precursor and forms
endostatin. Endostatin is a key tumour suppressor and
has been used highly successfully to treat cancer. It is
a potent angiogenesis inhibitor. Endostatin also binds a
zinc ion near the N-terminus; this is likely to be of
structural rather than functional importance according
to.
Length = 291
Score = 28.9 bits (65), Expect = 4.3
Identities = 13/56 (23%), Positives = 16/56 (28%), Gaps = 6/56 (10%)
Query: 217 PPPG-----PSVPPMHGGQTGPVATVHHPPPSQ-GGHGAMLPPHPRPGSPSGYPGA 266
P PG P + + H P Q A PHP SP+
Sbjct: 54 PLPGTTATQPPPVVLTPWSDPRLPDPPHLPDPQTHSATAHRNPHPPLNSPARIAHV 109
Score = 28.6 bits (64), Expect = 5.3
Identities = 17/55 (30%), Positives = 19/55 (34%), Gaps = 6/55 (10%)
Query: 258 GSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYP 312
G PG PPP S P P PPH P TH + P+P
Sbjct: 50 GELVPLPGTTATQPPPVVLTPWSDPRLPDPPH------LPDPQTHSATAHRNPHP 98
>gnl|CDD|153333 cd07649, F-BAR_GAS7, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific
protein 7. F-BAR domains are dimerization modules that
bind and bend membranes and are found in proteins
involved in membrane dynamics and actin reorganization.
Growth Arrest Specific protein 7 (GAS7) is mainly
expressed in the brain and is required for neurite
outgrowth. It may also play a role in the protection and
migration of embryonic stem cells. Treatment-related
acute myeloid leukemia (AML) has been reported resulting
from mixed-lineage leukemia (MLL)-GAS7 translocations as
a complication of primary cancer treatment. GAS7
contains an N-terminal SH3 domain, followed by a WW
domain, and a central F-BAR domain. F-BAR domains form
banana-shaped dimers with a positively-charged concave
surface that binds to negatively-charged lipid
membranes. They can induce membrane deformation in the
form of long tubules.
Length = 233
Score = 28.8 bits (64), Expect = 4.3
Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 38/162 (23%)
Query: 38 SEYEKNLKAYHNSPQYLAYMAAKAKGKQAQQAAEEREAQAQGFSGKNADRRIDIQPAEDE 97
EY KNL S +AA+ +G + A+ +++ A DE
Sbjct: 36 EEYAKNLSKLSQSS-----LAAQEEGTLGEAWAQVKKSLA------------------DE 72
Query: 98 DEQEDGYSVK-HVAYARYLRNHRLINEIFS------DSVVPDVRSVVTTNRMQVLKRQVQ 150
E +S K + L N R E F D + D+R + + R +++ +
Sbjct: 73 AEVHLKFSSKLQSEVEKPLLNFR---ENFKKDMKKLDHHIADLRKQLAS-RYAAVEKARK 128
Query: 151 SLTMHQKKLEAELQQIEEKFEAKK----RKFVESSEQFQEEL 188
+L QK LE + QQ+E K K +K S Q ++L
Sbjct: 129 ALLERQKDLEGKTQQLEIKLSNKTEEDIKKARRKSTQAGDDL 170
>gnl|CDD|216213 pfam00956, NAP, Nucleosome assembly protein (NAP). NAP proteins
are involved in moving histones into the nucleus,
nucleosome assembly and chromatin fluidity. They affect
the transcription of many genes.
Length = 236
Score = 28.9 bits (65), Expect = 4.4
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 12/80 (15%)
Query: 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAK------KRK-----FVESSEQFQEEL 188
R++ LK + L + K + E+ ++E K++ KR+ E +E +EE
Sbjct: 2 QRVEALKALQKELDELEAKFQEEVLELERKYDKLYQPLYDKRREIINGAREPTEVEEEEP 61
Query: 189 KKPGMGPEGYLNRLSASPVL 208
++ G+ P +L L P+L
Sbjct: 62 EEKGI-PGFWLTALKNHPLL 80
>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional.
Length = 1560
Score = 29.3 bits (65), Expect = 4.4
Identities = 16/77 (20%), Positives = 21/77 (27%), Gaps = 2/77 (2%)
Query: 273 PQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNA--GRPPHYPPHPGSQ 330
PG S P P+ PY P PY P + N P+ +
Sbjct: 413 GYSNPGNSNPGYNNAPNSNTPYNNPPNSNTPYSNPPNSNPPYSNLPYSNTPYSNAPLSNA 472
Query: 331 HPHQNCAHPETGQLVFQ 347
P H +Q
Sbjct: 473 PPSSAKDHHSAYHAAYQ 489
>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA
carboxylase.
Length = 274
Score = 28.7 bits (64), Expect = 4.5
Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Query: 231 TGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPP 288
PV + PPP AM P P P+ A P P P P A P + PP
Sbjct: 147 PAPVVMMQPPPPH-----AMPPASPPAAQPAPSAPASSPPPTPASPPPAKAPKSSHPP 199
Score = 28.3 bits (63), Expect = 6.9
Identities = 21/77 (27%), Positives = 25/77 (32%), Gaps = 22/77 (28%)
Query: 206 PVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPG 265
P APV PPP ++PP P A P P P S
Sbjct: 144 PPPPAPVVMMQPPPPHAMPP-----ASPPAAQPAPSAP--------ASSPPPTPAS---- 186
Query: 266 AGGPYPPPQQYPGASQP 282
PPP + P +S P
Sbjct: 187 -----PPPAKAPKSSHP 198
>gnl|CDD|206035 pfam13864, Enkurin, Calmodulin-binding. This is a family of
apparent calmodulin-binding proteins found at high
levels in the testis and vomeronasal organ and at lower
levels in certain other tissues. Enkurin is a scaffold
protein that binds PI3 kinase to sperm transient
receptor potential (canonical) (TRPC) channels. The
mammalian transient receptor potential (canonical)
channels are the primary candidates for the Ca(2+) entry
pathway activated by the hormones, growth factors, and
neurotransmitters that exert their effect through
activation of PLC. Calmodulin binds to the C-terminus of
all TRPC channels, and dissociation of calmodulin from
TRPC4 results in profound activation of the channel.
Length = 98
Score = 27.5 bits (62), Expect = 4.6
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 12/47 (25%)
Query: 140 NRMQVLKRQVQSLTM---------HQKKLEAELQQIEE---KFEAKK 174
L ++ Q L + +++LE EL +IEE K K
Sbjct: 51 KNWDELNKEYQKLPVVIDTPSKKRRKEELEKELAEIEEDIKKLSRPK 97
>gnl|CDD|234605 PRK00059, prsA, peptidylprolyl isomerase; Provisional.
Length = 336
Score = 28.9 bits (65), Expect = 4.9
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 131 PDVRSVVTTNRMQVLKRQVQSLTMHQK----KL---EAEL-QQIEEKFEAKKRKFVESSE 182
V+ + + Q+L + + QK KL E EL +++++K K++F E
Sbjct: 76 EQVKEQIKQQKEQILDSLITEKVLLQKAKELKLIPSEEELNKEVDKKINEIKKQFNNDEE 135
Query: 183 QFQEELKKPGMGPEGY 198
QF+E LK G E +
Sbjct: 136 QFEEALKATGFTEETF 151
>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family. This family of
proteins contain a band 4.1 domain (pfam00373), at their
amino terminus. This family represents the rest of these
proteins.
Length = 244
Score = 28.6 bits (64), Expect = 4.9
Identities = 33/188 (17%), Positives = 66/188 (35%), Gaps = 53/188 (28%)
Query: 33 NENNFSEYEKNLKAYHNSPQYLAYMAAKAKGKQAQQAAEEREAQAQGFSGKNADRRIDIQ 92
E + +K L+ Y + L + K KQ ++ A+ E +A + +RR++ +
Sbjct: 17 MEEDMRRAQKELEEYEETALEL-----EEKLKQEEEEAQLLEKKADEL--EEENRRLEEE 69
Query: 93 PAEDEDEQEDGYSVKHVAYARYLRNHRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSL 152
A E+E+E L + +V L
Sbjct: 70 AAASEEERER------------LEA-----------------------EVDEATAEVAKL 94
Query: 153 TMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKKPGMGPEGYLNRLSASPVLTAPV 212
++K EAE +Q++++ + + ++ E P +A P + APV
Sbjct: 95 EEEREKKEAETRQLQQELREAQEAHERARQELLEAAAAP-----------TAPPHVAAPV 143
Query: 213 SAQGPPPG 220
+ + P
Sbjct: 144 NGEQLEPD 151
>gnl|CDD|234541 TIGR04320, Surf_Exclu_PgrA, SEC10/PgrA surface exclusion domain.
This model describes a conserved domain found in surface
proteins of a number of Firmutes. Many members have
LPXTG C-terminal anchoring motifs and a substantial
number have the KxYKxGKxW putative sorting signal at the
N-terminus. The tetracycline resistance plasmid pCF10 in
Enterococcus faecalis promotes conjugal plasmid transfer
in response to sex pheromones, but PgrA/Sec10 encoded by
that plasmid, a member of this family, specifically
inhibits the ability of cells to receive homologous
plasmids. The phenomenon is called surface exclusion.
Length = 356
Score = 28.9 bits (65), Expect = 5.2
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 34 ENNFSEYEKNLKAYHNSPQYLAYMAAKAKGKQAQQAAEEREAQAQ 78
+ + +K L A + A AE R A+A+
Sbjct: 295 QAALATAQKELANAQAQALQTAQNNLATA-QAALANAEARLAKAK 338
>gnl|CDD|232887 TIGR00232, tktlase_bact, transketolase, bacterial and yeast. This
model is designed to capture orthologs of bacterial
transketolases. The group includes two from the yeast
Saccharomyces cerevisiae but excludes dihydroxyactetone
synthases (formaldehyde transketolases) from various
yeasts and the even more distant mammalian
transketolases. Among the family of thiamine
diphosphate-dependent enzymes that includes
transketolases, dihydroxyacetone synthases, pyruvate
dehydrogenase E1-beta subunits, and
deoxyxylulose-5-phosphate synthases, mammalian and
bacterial transketolases seem not to be orthologous
[Energy metabolism, Pentose phosphate pathway].
Length = 653
Score = 28.9 bits (65), Expect = 5.3
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 156 QKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKKPGMGPEGYLNRL 202
K E E E F A K+K+ E + +F L G P + +L
Sbjct: 298 GAKAEQEW---NELFAAYKKKYPELAAEFTRRLS--GELPADWDKKL 339
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 29.0 bits (66), Expect = 5.4
Identities = 12/45 (26%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 147 RQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQ-FQEELKK 190
+ ++L +KL+ EL++ +EK + ++ K +E +E+ Q+ +K+
Sbjct: 537 EEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKE 581
>gnl|CDD|150310 pfam09602, PhaP_Bmeg, Polyhydroxyalkanoic acid inclusion protein
(PhaP_Bmeg). This entry describes a protein found in
polyhydroxyalkanoic acid (PHA) gene regions and
incorporated into PHA inclusions in Bacillus cereus and
Bacillus megaterium. The role of the protein may include
amino acid storage.
Length = 168
Score = 28.2 bits (62), Expect = 5.5
Identities = 11/53 (20%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 139 TNRMQVLKRQVQSLTMHQKKLEAEL-QQIEEKFEAKKRKFVESSEQFQEELKK 190
+ +Q L + K + +Q +E+FE ++F+E ++ +EE +
Sbjct: 94 QEKTHEALAHLQELFFNPSKSSLSILKQAQEQFEETTKQFIEEQKKQREEAQH 146
>gnl|CDD|180413 PRK06128, PRK06128, oxidoreductase; Provisional.
Length = 300
Score = 28.7 bits (64), Expect = 5.7
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 269 PYP-PPQQYPGASQPLAPRPPHGQYPY 294
P+P Q+ PG + P+P HG+ Y
Sbjct: 21 PFPEQTQEAPGTIHEMQPKPDHGEQSY 47
>gnl|CDD|227657 COG5354, COG5354, Uncharacterized protein, contains Trp-Asp (WD)
repeat [General function prediction only].
Length = 561
Score = 28.7 bits (64), Expect = 5.7
Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 131 PDVRSVVTTNRMQVLKRQVQSLTMHQKKLEA--ELQQIEEKFEAKKRKFVESSEQFQEEL 188
P + +V + +++SL + +EA E + E+ E + +E+ E+ EL
Sbjct: 496 PRKKELVEQWPEYSDEDKIRSLLKKLRAIEALKERMRSGEELEVIQVNKIETEEEVLSEL 555
Query: 189 KKP 191
K+
Sbjct: 556 KEL 558
>gnl|CDD|131186 TIGR02131, phaP_Bmeg, polyhydroxyalkanoic acid inclusion protein
PhaP. This model describes a protein found in
polyhydroxyalkanoic acid (PHA) gene regions and
incorporated into PHA inclusions in Bacillus cereus and
Bacillus megaterium. The role of the protein may include
amino acid storage (see McCool,G.J. and Cannon,M.C,
1999).
Length = 165
Score = 28.2 bits (62), Expect = 5.8
Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 14/129 (10%)
Query: 63 GKQAQQAAEEREAQAQGFSGKNADRRIDIQPAEDEDEQEDGYSVKHVAYARYLRNHRLIN 122
GKQ +Q E Q Q K A +D E + E D ++ K + L + L +
Sbjct: 28 GKQIEQLTLEALEQQQDALHK-ATEGLDALDKELKAELAD-FNNKTTDNLKKLAGNALAD 85
Query: 123 EIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAEL-QQIEEKFEAKKRKFVESS 181
+I ++ + L + K + +Q +E+FE ++F+E
Sbjct: 86 QIEE-----------WQDKTHEALAHLHELFFNPSKSSLSILKQAQEQFEETTKQFIEEQ 134
Query: 182 EQFQEELKK 190
++ +EE +
Sbjct: 135 KKQREEAQH 143
>gnl|CDD|131526 TIGR02473, flagell_FliJ, flagellar export protein FliJ. Members of
this family are the FliJ protein found, in nearly every
case, in the midst of other flagellar biosynthesis genes
in bacgterial genomes. Typically the fliJ gene is found
adjacent to the gene for the flagellum-specific ATPase
FliI. Sequence scoring in the gray zone between trusted
and noise cutoffs include both probable FliJ proteins
and components of bacterial type III secretion systems.
Length = 141
Score = 27.7 bits (62), Expect = 6.4
Identities = 11/51 (21%), Positives = 29/51 (56%), Gaps = 7/51 (13%)
Query: 145 LKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVE-----SSEQFQEELKK 190
+++Q Q L + Q+++EA+ +++ E ++ K +E ++++ E K
Sbjct: 77 IQQQQQELALLQQEVEAKRERLLEA--RRELKALEKLKEKKQKEYRAEEAK 125
>gnl|CDD|153295 cd07611, BAR_Amphiphysin_I_II, The Bin/Amphiphysin/Rvs (BAR) domain
of Amphiphysin I and II. BAR domains are dimerization,
lipid binding and curvature sensing modules found in
many different proteins with diverse functions.
Amphiphysins function primarily in endocytosis and other
membrane remodeling events. They contain an N-terminal
BAR domain with an additional N-terminal amphipathic
helix (an N-BAR), a variable central domain, and a
C-terminal SH3 domain. Amphiphysin I proteins, enriched
in the brain and nervous system, contain domains that
bind clathrin, Adaptor Protein complex 2 (AP2), dynamin
and synaptojanin. They function in synaptic vesicle
endocytosis. Some amphiphysin II isoforms, also called
Bridging integrator 1 (Bin1), are localized in many
different tissues and may function in intracellular
vesicle trafficking. In skeletal muscle, Bin1 plays a
role in the organization and maintenance of the T-tubule
network. The N-BAR domain of amphiphysin forms a curved
dimer with a positively-charged concave face that can
drive membrane bending and curvature. Human
autoantibodies to amphiphysin-1 hinder GABAergic
signaling and contribute to the pathogenesis of
paraneoplastic stiff-person syndrome. Mutations in
amphiphysin-2 (BIN1) are associated with autosomal
recessive centronuclear myopathy.
Length = 211
Score = 28.0 bits (62), Expect = 6.6
Identities = 14/63 (22%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 131 PDVRSVVTTNRMQVL-----KRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQ 185
PD+++ + +++ + +++L ++K E + + EE+F+ ++ F E + Q
Sbjct: 104 PDIKNRIAKRSRKLVDYDSARHHLEALQTSKRKDEGRIAKAEEEFQKAQKVFEEFNVDLQ 163
Query: 186 EEL 188
EEL
Sbjct: 164 EEL 166
>gnl|CDD|178867 PRK00106, PRK00106, hypothetical protein; Provisional.
Length = 535
Score = 28.7 bits (64), Expect = 6.7
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 139 TNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELK 189
+++ + L+ + QSLT K ++ +Q+E+ E KK + + Q E +
Sbjct: 121 SSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVAALSQAEAR 171
>gnl|CDD|217453 pfam03251, Tymo_45kd_70kd, Tymovirus 45/70Kd protein. Tymoviruses
are single stranded RNA viruses. This family includes a
protein of unknown function that has been named based on
its molecular weight. Tymoviruses such as the ononis
yellow mosaic tymovirus encode only three proteins. Of
these two are overlapping this protein overlaps a larger
ORF that is thought to be the polymerase.
Length = 458
Score = 28.5 bits (64), Expect = 6.9
Identities = 21/129 (16%), Positives = 28/129 (21%), Gaps = 26/129 (20%)
Query: 213 SAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPP 272
S+Q PPP + V + + + P P P S
Sbjct: 356 SSQLPPPTKRRLRLLPVPPPKVQALPLTALAPLVRHSPSIPLPHPPSALPSHV------- 408
Query: 273 PQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHYPPHPGSQHP 332
GAS R P P P P+ P P
Sbjct: 409 -----GASSSKHHRLPPSVLPGPRLSSPSPS--------------PSLPTRRPGTPPPPA 449
Query: 333 HQNCAHPET 341
P +
Sbjct: 450 SPPTPSPPS 458
>gnl|CDD|235548 PRK05657, PRK05657, RNA polymerase sigma factor RpoS; Validated.
Length = 325
Score = 28.4 bits (64), Expect = 7.0
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 198 YLNRLSASPVLTAP 211
YLN + SP+LTA
Sbjct: 58 YLNEIGYSPLLTAE 71
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 28.4 bits (64), Expect = 7.3
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 58 AAKAKGKQAQQAAEEREAQAQGFSGKNADRRIDIQPAEDED 98
KA+ ++A++AA +++A+A K D D D
Sbjct: 422 EKKAEKEEAEKAAAKKKAEAAAKKAKGPD---GETKKVDPD 459
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin. Trichoplein
or mitostatin, was first defined as a meiosis-specific
nuclear structural protein. It has since been linked
with mitochondrial movement. It is associated with the
mitochondrial outer membrane, and over-expression leads
to reduction in mitochondrial motility whereas lack of
it enhances mitochondrial movement. The activity appears
to be mediated through binding the mitochondria to the
actin intermediate filaments (IFs).
Length = 349
Score = 28.3 bits (64), Expect = 7.5
Identities = 7/37 (18%), Positives = 17/37 (45%)
Query: 154 MHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190
+ +E E + + E ++RK E + + L++
Sbjct: 42 RIDEMMEEERLKALAEEEERERKRKEERREGRAVLQE 78
>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase;
Provisional.
Length = 353
Score = 28.3 bits (63), Expect = 7.6
Identities = 18/76 (23%), Positives = 24/76 (31%), Gaps = 5/76 (6%)
Query: 250 MLPPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAY 309
M P P PG P P++ P + PL R P P P P P ++
Sbjct: 1 MKPIQPPPGVPLPSTARHTTKSRPRRRPDLTLPLPQRDPSLAVPLPLP-----PPSSSSS 55
Query: 310 PYPQHMNAGRPPHYPP 325
+G P
Sbjct: 56 SSSSSSASGSAPSAAK 71
>gnl|CDD|227606 COG5281, COG5281, Phage-related minor tail protein [Function
unknown].
Length = 833
Score = 28.5 bits (63), Expect = 8.1
Identities = 31/178 (17%), Positives = 66/178 (37%), Gaps = 12/178 (6%)
Query: 33 NENNFSEYEKNLKAYHNSPQYLAYMAAKAKGKQAQQAAEEREAQAQGFSGKNADRRIDIQ 92
+N ++ EK + L AKAK QA + +A + + A R
Sbjct: 426 LKNLLADAEKRTARQ----EELNKALAKAK---ILQADKAAKAYQEDILQREAQSRGKTA 478
Query: 93 PAEDEDEQEDGYSVKHVAYARYLRNHRLINEIFSD-----SVVPDVRSVVTTNRMQVLKR 147
AE EQ +A+ + + + E SD + +++ Q +
Sbjct: 479 AAERSQEQMTAALKALLAFQQQIADLSGAKEKASDQKSLLWKAEEQYALLKEEAKQRQLQ 538
Query: 148 QVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKKPGMGPEGYLNRLSAS 205
+ ++L H+K+ Q+ E + + +F S++ + ++ L + +A+
Sbjct: 539 EQKALLEHKKETLEYTSQLAELLDQQADRFELSAQAAGSQKERGSDLYREALAQNAAA 596
>gnl|CDD|221179 pfam11711, Tim54, Inner membrane protein import complex subunit
Tim54. Mitochondrial function depends on the import of
hundreds of different proteins synthesised in the
cytosol. Protein import is a multi-step pathway which
includes the binding of precursor proteins to surface
receptors, translocation of the precursor across one or
both mitochondrial membranes, and folding and assembly
of the imported protein inside the mitochondrion. Most
precursor proteins carry amino-terminal targeting
signals, called pre-sequences, and are imported into
mitochondria via import complexes located in both the
outer and the inner membrane (IM). The IM complex, TIM,
is made up of at least two proteins which mediate
translocation of proteins into the matrix by removing
their signal peptide and another pair of proteins, Tim54
and Tim22, that insert the polytopic proteins, that
carry internal targetting information, into the inner
membrane.
Length = 377
Score = 28.2 bits (63), Expect = 8.1
Identities = 35/195 (17%), Positives = 55/195 (28%), Gaps = 33/195 (16%)
Query: 123 EIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSE 182
E+ D+R+ V R++ L+R+ + LE E + ++ + ++ V
Sbjct: 105 EVIEGRRQGDIRAEVA-ERIRKLRRKAGEEPEEELPLEEEATKEDDLADPRQVLGV---- 159
Query: 183 QFQEELKKPGMG-----------------PEGYLNRLSASPVLTAPVSAQGPPPGPSVPP 225
+ + PG G EG+L L V P P
Sbjct: 160 -YYKAKDPPGAGGVIVIGRHAWKEYIRGLHEGWLGPLDPPEPPEPTVDEAAPETEVEATP 218
Query: 226 MHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAP 285
P + P PY P +YP S PL P
Sbjct: 219 ---AAESPAEPAEETAETTPEETEDAPEEENNKPVKPPVPK--PYISPDEYP--SAPLPP 271
Query: 286 RPP---HGQYPYPYP 297
P P+P
Sbjct: 272 ELPQLLQPSLVIPFP 286
>gnl|CDD|219061 pfam06495, Transformer, Fruit fly transformer protein. This family
consists of transformer proteins from several Drosophila
species and also from Ceratitis capitata (Mediterranean
fruit fly). The transformer locus (tra) produces an RNA
processing protein that alternatively splices the
doublesex pre-mRNA in the sex determination hierarchy of
Drosophila melanogaster.
Length = 182
Score = 27.7 bits (61), Expect = 8.2
Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 272 PPQQYPGASQPLAPRPP----HGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHYPPHP 327
P YP A P P G +PY P PY+ YP P R P + PHP
Sbjct: 122 PAADYPYAYGWPPPAPQFSGMQGAFPYGMLPRPVPPYFA-PYPRPPAPFRYRAPPFRPHP 180
>gnl|CDD|232949 TIGR00382, clpX, endopeptidase Clp ATP-binding regulatory subunit
(clpX). A member of the ATP-dependent proteases, ClpX
has ATP-dependent chaperone activity and is required for
specific ATP-dependent proteolytic activities expressed
by ClpPX. The gene is also found to be involved in
stress tolerance in Bacillus subtilis and is essential
for the efficient acquisition of genes specifying type
IA and IB restriction [Protein fate, Protein folding and
stabilization, Protein fate, Degradation of proteins,
peptides, and glycopeptides].
Length = 413
Score = 28.2 bits (63), Expect = 8.4
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 324 PPHPGSQHPHQNCAHPETGQLVF 346
PP G +HP+Q +T ++F
Sbjct: 227 PPQGGRKHPYQEFIQIDTSNILF 249
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 28.4 bits (64), Expect = 8.8
Identities = 38/167 (22%), Positives = 56/167 (33%), Gaps = 47/167 (28%)
Query: 65 QAQQAAEEREAQAQGFSGKNADRRIDIQP--AEDEDEQEDGYSVKHVAYARY--LRNH-- 118
+ QQ AE A+ GKN D +++ E E E A R LR
Sbjct: 530 RQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLE 589
Query: 119 -------RL----------------INEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMH 155
RL + E + D + V T MQ L + + LT+
Sbjct: 590 QLQARIQRLAARAPAWLAAQDALARLREQSGEEFE-DSQDV--TEYMQQLLERERELTVE 646
Query: 156 QKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKKPGMGPEGYLNRL 202
+ +L A Q ++E+ E L +PG + LN L
Sbjct: 647 RDELAARKQALDEEI---------------ERLSQPGGSEDPRLNAL 678
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau;
Validated.
Length = 830
Score = 28.3 bits (63), Expect = 9.0
Identities = 19/149 (12%), Positives = 27/149 (18%), Gaps = 8/149 (5%)
Query: 191 PGMGPEGYLNRLSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAM 250
P + + +P A +A P+ P P
Sbjct: 397 PAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPA----- 451
Query: 251 LPPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYP 310
S PP ++ P P P A P
Sbjct: 452 --KANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAP-RAAAPSAATPAAVP 508
Query: 311 YPQHMNAGRPPHYPPHPGSQHPHQNCAHP 339
+ A P P P
Sbjct: 509 DARAPAAASREDAPAAAAPPAPEARPPTP 537
>gnl|CDD|185748 cd09235, V_Alix, Middle V-domain of mammalian Alix and related
domains are dimerization and protein interaction
modules. This family contains the middle V-shaped (V)
domain of mammalian Alix (apoptosis-linked gene-2
interacting protein X) and related domains. It belongs
to the V_Alix_like superfamily which includes the
V-domains of Bro1 and Rim20 (also known as PalA) from
Saccharomyces cerevisiae, mammalian His-Domain type N23
protein tyrosine phosphatase (HD-PTP, also known as
PTPN23), and related domains. Alix, also known as
apoptosis-linked gene-2 interacting protein 1 (AIP1), is
part of the ESCRT (Endosomal Sorting Complexes Required
for Transport) system, and participates in membrane
remodeling processes, including the budding of enveloped
viruses, vesicle budding inside late endosomal
multivesicular bodies (MVBs), the abscission reactions
of mammalian cell division, and in apoptosis. The Alix
V-domain is a dimerization domain, and contains a
binding site, partially conserved in the V_Alix_like
superfamily, for the retroviral late assembly (L) domain
YPXnL motif. In addition to the V-domain, Alix also has
an N-terminal Bro1-like domain, which binds components
of the ESCRT-III complex, in particular CHMP4. The
Bro1-like domain of Alix can also bind to human
immunodeficiency virus type 1 (HIV-1) nucleocapsid. Alix
also has a C-terminal proline-rich region (PRR) that
binds multiple partners including Tsg101 (tumor
susceptibility gene 101, a component of ESCRT-1), and
the apoptotic protein ALG-2.
Length = 339
Score = 28.0 bits (63), Expect = 9.1
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 143 QVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190
L++QVQ Q+ L A +Q ++F +K+ ++E+ +E LK
Sbjct: 250 GPLQKQVQESLSRQESLLANIQVAHQEFSKEKQSNSGANER-EEVLKD 296
>gnl|CDD|220368 pfam09730, BicD, Microtubule-associated protein Bicaudal-D. BicD
proteins consist of three coiled-coiled domains and are
involved in dynein-mediated minus end-directed transport
from the Golgi apparatus to the endoplasmic reticulum
(ER). For full functioning they bind with GSK-3beta
pfam05350 to maintain the anchoring of microtubules to
the centromere. It appears that amino-acid residues
437-617 of BicD and the kinase activity of GSK-3 are
necessary for the formation of a complex between BicD
and GSK-3beta in intact cells.
Length = 711
Score = 28.3 bits (63), Expect = 9.1
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 94 AEDEDEQEDGYSVKHVAYARYLRNHRLINEIFS-DSVVPDVRSVVTTNRMQVLKRQVQSL 152
++ E E+G+ A+ L E+F V D+ S + + +Q LK+Q++ +
Sbjct: 213 PNNDGEDENGHLNGGPGLAKSL-GTPRKGELFPPAPGVSDLFSELNLSEIQKLKQQLEQV 271
Query: 153 TMHQKKLEAELQQIEEKFEAKKRKFVESSE 182
+ L A LQ+++ + E + E E
Sbjct: 272 EREKASLLANLQELQTQLEQSEGALSEQHE 301
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.134 0.416
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,978,638
Number of extensions: 1959893
Number of successful extensions: 5154
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3768
Number of HSP's successfully gapped: 571
Length of query: 379
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 280
Effective length of database: 6,546,556
Effective search space: 1833035680
Effective search space used: 1833035680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (26.8 bits)