RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1953
(379 letters)
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 66.0 bits (160), Expect = 7e-12
Identities = 21/137 (15%), Positives = 28/137 (20%), Gaps = 3/137 (2%)
Query: 213 SAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPP 272
AQ + P Q P S G G P P
Sbjct: 11 QAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMP-PQGAVPSMGQQQFLTPAQEQL 69
Query: 273 PQQYPGASQPLAPRPPHGQYPYPYPQY--PTHPYYGNAYPYPQHMNAGRPPHYPPHPGSQ 330
QQ A+ + H Y P P Q P + P
Sbjct: 70 HQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMG 129
Query: 331 HPHQNCAHPETGQLVFQ 347
+ L+ +
Sbjct: 130 QNMRPMNQLYPIDLLTE 146
Score = 62.5 bits (151), Expect = 1e-10
Identities = 15/122 (12%), Positives = 23/122 (18%)
Query: 203 SASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSG 262
+ + PP P+ M GQ G P Q
Sbjct: 17 GQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQA 76
Query: 263 YPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPH 322
+ + + P+ P Q P RP +
Sbjct: 77 TTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMN 136
Query: 323 YP 324
Sbjct: 137 QL 138
Score = 59.8 bits (144), Expect = 7e-10
Identities = 27/154 (17%), Positives = 33/154 (21%), Gaps = 9/154 (5%)
Query: 191 PGMGPEGYLNRLSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAM 250
+ G PP +VP M Q A +M
Sbjct: 21 TPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSM 80
Query: 251 LPPH--------PRPGSPSGYPGAGGPYPPPQQYPGASQPL-APRPPHGQYPYPYPQYPT 301
H P P G QQ P A+ P GQ P Q
Sbjct: 81 NDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYP 140
Query: 302 HPYYGNAYPYPQHMNAGRPPHYPPHPGSQHPHQN 335
P + PP P P +
Sbjct: 141 IDLLTELPPPITDLTLPPPPLVIPPERMLVPSEL 174
Score = 57.9 bits (139), Expect = 3e-09
Identities = 24/143 (16%), Positives = 34/143 (23%), Gaps = 7/143 (4%)
Query: 191 PGMGPEGYLNRLSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAM 250
GM P+G + + LT + M+ H P + M
Sbjct: 45 MGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMH-------LHNVPLVDPNAYM 97
Query: 251 LPPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYP 310
P P P P A+ RP + YP P P
Sbjct: 98 QPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLP 157
Query: 311 YPQHMNAGRPPHYPPHPGSQHPH 333
P + P + P
Sbjct: 158 PPPLVIPPERMLVPSELSNASPD 180
Score = 49.4 bits (117), Expect = 1e-06
Identities = 14/106 (13%), Positives = 20/106 (18%), Gaps = 5/106 (4%)
Query: 238 HHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYP 297
P +Q +G P +P Q Q P Q+ P
Sbjct: 7 RVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQ 66
Query: 298 QYPTHPYYGNAYPYPQHMNAGRPPHYPPHPGSQHPHQNCAHPETGQ 343
+ H P Q + G
Sbjct: 67 EQLHQQIDQATTSMNDM-----HLHNVPLVDPNAYMQPQVPVQMGT 107
Score = 46.7 bits (110), Expect = 1e-05
Identities = 13/94 (13%), Positives = 19/94 (20%), Gaps = 4/94 (4%)
Query: 254 HPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPY----PYPQYPTHPYYGNAY 309
H + P G P QQ P P Y P P+
Sbjct: 4 HKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLT 63
Query: 310 PYPQHMNAGRPPHYPPHPGSQHPHQNCAHPETGQ 343
P + ++ + P
Sbjct: 64 PAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYM 97
Score = 43.3 bits (101), Expect = 1e-04
Identities = 12/85 (14%), Positives = 12/85 (14%)
Query: 260 PSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGR 319
YP A Y P Y Q P Q
Sbjct: 6 KRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPA 65
Query: 320 PPHYPPHPGSQHPHQNCAHPETGQL 344
N H L
Sbjct: 66 QEQLHQQIDQATTSMNDMHLHNVPL 90
Score = 32.9 bits (74), Expect = 0.21
Identities = 9/64 (14%), Positives = 9/64 (14%)
Query: 280 SQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHYPPHPGSQHPHQNCAHP 339
S P Q Y P P P P
Sbjct: 2 SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQF 61
Query: 340 ETGQ 343
T
Sbjct: 62 LTPA 65
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 56.3 bits (135), Expect = 7e-09
Identities = 20/136 (14%), Positives = 29/136 (21%), Gaps = 11/136 (8%)
Query: 206 PVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPG 265
P + P SV + HPP + PP P G+P
Sbjct: 11 SSGLVPRGSHMVIPSASVTSAASDFLAAL----HPPVTVPDPAPPPPPAPAAGNPPDTVT 66
Query: 266 AGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHYPP 325
+ P + P P P+ P P ++ P
Sbjct: 67 GDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVP-------GLYHHP 119
Query: 326 HPGSQHPHQNCAHPET 341
P
Sbjct: 120 VPEPDPVRVEEVSRRI 135
Score = 39.7 bits (92), Expect = 0.001
Identities = 22/118 (18%), Positives = 28/118 (23%), Gaps = 15/118 (12%)
Query: 218 PPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQYP 277
S G + S + HP P P PPP P
Sbjct: 8 HHHSSGLVPRGSHMVIPSASVTSAASD----FLAALHPPVTVP-------DPAPPPPPAP 56
Query: 278 GASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAG---RPPHYPPHPGSQHP 332
A P + PT P + P ++ P PP G P
Sbjct: 57 AAGNP-PDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVP 113
Score = 37.8 bits (87), Expect = 0.004
Identities = 16/76 (21%), Positives = 17/76 (22%), Gaps = 2/76 (2%)
Query: 252 PPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPY 311
H S G+ P AS LA P P P P P P P
Sbjct: 5 HHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAP--AAGNPP 62
Query: 312 PQHMNAGRPPHYPPHP 327
P
Sbjct: 63 DTVTGDSVLQRILRGP 78
Score = 32.0 bits (72), Expect = 0.31
Identities = 10/62 (16%), Positives = 16/62 (25%), Gaps = 1/62 (1%)
Query: 273 PQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHYPPHPGSQHP 332
+ +S PR H P + +P + PP P G+
Sbjct: 5 HHHHHHSSGL-VPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPD 63
Query: 333 HQ 334
Sbjct: 64 TV 65
Score = 29.7 bits (66), Expect = 1.7
Identities = 17/78 (21%), Positives = 18/78 (23%), Gaps = 6/78 (7%)
Query: 204 ASPVLTAPVSAQGPPPGPSVPPMH-GGQTGP---VATVHHPPPSQGGHGAMLPPHPRPGS 259
P A + G SV G TGP Q G A P G
Sbjct: 51 PPPPAPAAGNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGR 110
Query: 260 PSGYPGAGGPYPPPQQYP 277
PG P
Sbjct: 111 AV--PGLYHHPVPEPDPV 126
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 49.6 bits (118), Expect = 4e-07
Identities = 29/123 (23%), Positives = 37/123 (30%), Gaps = 1/123 (0%)
Query: 209 TAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPG-SPSGYPGAG 267
+ +G P G +P G GPV V P + + GA
Sbjct: 106 IGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAP 165
Query: 268 GPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHYPPHP 327
YPP + P PP P P + P P G M P PP P
Sbjct: 166 TQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPP 225
Query: 328 GSQ 330
G +
Sbjct: 226 GMR 228
Score = 39.2 bits (91), Expect = 0.001
Identities = 21/124 (16%), Positives = 27/124 (21%), Gaps = 3/124 (2%)
Query: 212 VSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYP 271
++ +GPPP + +G + P G G GGP
Sbjct: 80 MTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQ 139
Query: 272 PPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHYPPHPGSQH 331
G PT G P P PP P
Sbjct: 140 QVMTPQG---RGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMR 196
Query: 332 PHQN 335
P
Sbjct: 197 PPMG 200
Score = 38.9 bits (90), Expect = 0.002
Identities = 25/128 (19%), Positives = 30/128 (23%), Gaps = 5/128 (3%)
Query: 205 SPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYP 264
P A+ P G + P G G P P + P G PS
Sbjct: 84 GPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMP--QAPAGLAGPVRGVGGPSQQV 141
Query: 265 GAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHYP 324
A+ P YP + P G P P M P
Sbjct: 142 MTPQGRGTVAAAAAAATASIAGAPT---QYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPP 198
Query: 325 PHPGSQHP 332
P P
Sbjct: 199 MGPPMGIP 206
Score = 32.3 bits (73), Expect = 0.20
Identities = 22/83 (26%), Positives = 28/83 (33%)
Query: 191 PGMGPEGYLNRLSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAM 250
G +A+ A Q PP PP G P + PP + G
Sbjct: 143 TPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPP 202
Query: 251 LPPHPRPGSPSGYPGAGGPYPPP 273
+ P G+P G P G PPP
Sbjct: 203 MGIPPGRGTPMGMPPPGMRPPPP 225
Score = 30.4 bits (68), Expect = 0.69
Identities = 21/87 (24%), Positives = 26/87 (29%), Gaps = 1/87 (1%)
Query: 191 PGMGPEGYLNRLSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAM 250
P R + + A ++ P PP GG P+ PP G M
Sbjct: 137 PSQQVMTPQGRGTVAAAAAAATASIAGAPTQ-YPPGRGGPPPPMGRGAPPPGMMGPPPGM 195
Query: 251 LPPHPRPGSPSGYPGAGGPYPPPQQYP 277
PP P G PPP P
Sbjct: 196 RPPMGPPMGIPPGRGTPMGMPPPGMRP 222
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 47.4 bits (112), Expect = 6e-06
Identities = 20/132 (15%), Positives = 29/132 (21%), Gaps = 12/132 (9%)
Query: 209 TAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGG 268
P S + + P+ GG A +
Sbjct: 1470 VTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEA 1529
Query: 269 PYPPPQQYPGASQPLAPRPPH------GQYPYPYPQYPTHPYYGNAY----PYPQHMNAG 318
P P + +S +P P P PT P Y P +
Sbjct: 1530 PTSP--GFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1587
Query: 319 RPPHYPPHPGSQ 330
P + P P
Sbjct: 1588 SPSYSPTSPSYS 1599
Score = 43.2 bits (101), Expect = 1e-04
Identities = 26/135 (19%), Positives = 34/135 (25%), Gaps = 10/135 (7%)
Query: 202 LSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPR--PGS 259
L SP++ + + G G + P P S
Sbjct: 1490 LMFSPLVDSGSN---DAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTS 1546
Query: 260 PSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGR 319
P+ P + P Y S +P P P PT P Y P
Sbjct: 1547 PTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYS----PT 1601
Query: 320 PPHYPPHPGSQHPHQ 334
P Y P S P
Sbjct: 1602 SPSYSPTSPSYSPTS 1616
Score = 42.0 bits (98), Expect = 3e-04
Identities = 31/147 (21%), Positives = 41/147 (27%), Gaps = 6/147 (4%)
Query: 191 PGMGPEGYLNRLSASPVLTAPVSAQGPP--PGPSVPPMHGGQTGPVATVHHPPPSQGG-H 247
P P S + +P S P P S T P + P S
Sbjct: 1547 PTYSP--TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1604
Query: 248 GAMLPPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGN 307
+ P P SPS P + P Y S +P P P PT P Y
Sbjct: 1605 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPTSPAYSP 1663
Query: 308 AYPYPQHMNAGRPPHYPPHPGSQHPHQ 334
P + P P + + +
Sbjct: 1664 TSPSYSPTSPSYSPTSPSYSPTSPSYS 1690
Score = 40.8 bits (95), Expect = 7e-04
Identities = 23/148 (15%), Positives = 29/148 (19%), Gaps = 22/148 (14%)
Query: 214 AQGPPPGPSVPPMHGGQTGPVATVH--HPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYP 271
+ G P + M P GS G Y
Sbjct: 1453 YMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYG 1512
Query: 272 PPQQYPGAS--QPLAPRPPHGQYPYPYPQY-PTHPYY-----------GNAYPYPQHMNA 317
S P + P + PT P Y + P +
Sbjct: 1513 GADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSP 1572
Query: 318 GRP------PHYPPHPGSQHPHQNCAHP 339
P P Y P S P P
Sbjct: 1573 TSPSYSPTSPSYSPTSPSYSPTSPSYSP 1600
Score = 37.0 bits (85), Expect = 0.012
Identities = 28/128 (21%), Positives = 37/128 (28%), Gaps = 11/128 (8%)
Query: 203 SASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPR--PGSP 260
S + +P S P PS P + P + P P P SP
Sbjct: 1613 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT------SPSYSPTSPSYSPTSPAYSPTSP 1666
Query: 261 SGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQY-PTHPYYGNAYPYPQHMNAGR 319
S P + P Y S +P P Y P Y PT P Y P +
Sbjct: 1667 SYSPTSPSYSPTSPSYSPTSPSYSPTSP--NYSPTSPSYSPTSPGYSPGSPAYSPKQDEQ 1724
Query: 320 PPHYPPHP 327
+ +
Sbjct: 1725 KHNENENS 1732
Score = 37.0 bits (85), Expect = 0.013
Identities = 38/176 (21%), Positives = 48/176 (27%), Gaps = 31/176 (17%)
Query: 191 PGMGP-EGYLNRLSASPVLTAPV-SAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHG 248
P P + S S T+P S P P+ P T P+ +
Sbjct: 1554 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1613
Query: 249 AMLP------PHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPH------------G 290
P P P SPS P + P Y S +P P
Sbjct: 1614 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSP 1673
Query: 291 QYPYPYPQY--------PTHPYYGNAYPYPQHMNAG---RPPHYPPHPGSQHPHQN 335
Y P Y PT P Y P + G P Y P Q ++N
Sbjct: 1674 SYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYSPKQDEQKHNEN 1729
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 45.6 bits (107), Expect = 1e-05
Identities = 31/165 (18%), Positives = 44/165 (26%), Gaps = 15/165 (9%)
Query: 194 GPEGYLNRLSASPVLTAPVSAQGPPPGPSVPP-MHGGQTGPVATVHHPPPSQGGHGAMLP 252
+ A + G Q +A P G + P
Sbjct: 224 QLQEAPLEWKALLEMQQTKMVLETFGGDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNP 283
Query: 253 PHPRPGSPSGY------PGAGGPYPPPQQYPGASQPLAP-RPPHGQYPYPYPQYPTHPYY 305
PGS + PG+ G + P + PG++ P RP G P P
Sbjct: 284 GSYGPGSSGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSA 343
Query: 306 GNAYPY------PQHMNAGRPPHYPPHPGS-QHPHQNCAHPETGQ 343
G P N G P S H + + P+ G
Sbjct: 344 GTWNPGRPEPGSAGTWNTGSSGSSSFRPDSSGHGNIRPSSPDWGT 388
Score = 43.7 bits (102), Expect = 7e-05
Identities = 25/139 (17%), Positives = 34/139 (24%), Gaps = 5/139 (3%)
Query: 195 PEGYLNRLSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPH 254
YL L S + + + GH
Sbjct: 201 DIQYLPILKMSTITGPVPREFKSQLQEAPLEWKALLEMQQTKMVLETFGGDGHARGDSVS 260
Query: 255 PRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYP-YPQ 313
G G P G PG+ P + + P P +P G P
Sbjct: 261 QGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGTWNPGRPEPGSAGTWNP--GRPEPGSAG 318
Query: 314 HMNAGRPPHYPPHPGSQHP 332
N GRP P G+ +P
Sbjct: 319 TWNPGRPE--PGSAGTWNP 335
Score = 36.0 bits (82), Expect = 0.016
Identities = 18/89 (20%), Positives = 26/89 (29%), Gaps = 4/89 (4%)
Query: 203 SASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSG 262
+ +P P SA PG P G G P S G P G+ +
Sbjct: 306 TWNPGRPEPGSAGTWNPGRPEP----GSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNT 361
Query: 263 YPGAGGPYPPPQQYPGASQPLAPRPPHGQ 291
+ P G +P +P +
Sbjct: 362 GSSGSSSFRPDSSGHGNIRPSSPDWGTFR 390
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 43.9 bits (103), Expect = 5e-05
Identities = 16/116 (13%), Positives = 23/116 (19%), Gaps = 1/116 (0%)
Query: 224 PPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQYPGASQPL 283
+ V+ S G G+M P P G G + P +
Sbjct: 7 HHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGM 66
Query: 284 APRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHYPPHPGSQHPHQNCAHP 339
P P P + P P + P
Sbjct: 67 GPPFSVISSPMG-PHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGV 121
Score = 43.6 bits (102), Expect = 7e-05
Identities = 22/125 (17%), Positives = 30/125 (24%), Gaps = 5/125 (4%)
Query: 217 PPPGPSVPPMHGGQTGPVATVHHPP--PSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQ 274
S+ G + A HP P G G + P SP G
Sbjct: 18 TQVNSSLTSPTG-RGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISSP 76
Query: 275 QYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRP--PHYPPHPGSQHP 332
P + P P +P + P G P +P +
Sbjct: 77 MGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFT 136
Query: 333 HQNCA 337
CA
Sbjct: 137 KHICA 141
Score = 34.3 bits (78), Expect = 0.064
Identities = 17/117 (14%), Positives = 28/117 (23%), Gaps = 4/117 (3%)
Query: 226 MHGGQTGPVATVHHPPPSQGGHGAMLPP-HPRPGSPSGYPGAGGPYPPPQQYPGASQPLA 284
M V +Q P +PS +P G P Q P++
Sbjct: 1 MAHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLH---SPIS 57
Query: 285 PRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHYPPHPGSQHPHQNCAHPET 341
P + P ++ P G P +P + +
Sbjct: 58 TLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKP 114
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 44.1 bits (104), Expect = 5e-05
Identities = 27/143 (18%), Positives = 36/143 (25%), Gaps = 21/143 (14%)
Query: 180 SSEQFQEELKKPGMGPEGYLNRLSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHH 239
S +F+E + + + + +P P +
Sbjct: 318 SHPKFREAISQ-------TFPWVLTCCQFDDKETEDDKDAETEIPAGESSDAAP-SADAA 369
Query: 240 PPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQY 299
+ P GY PPPQ YP P PP G P YP
Sbjct: 370 QMKEMMAMMQKMQQQQAAYPPQGY------APPPQGYPPQGYPPQGYPPQGYPPQGYPPP 423
Query: 300 PTHPYYGNAYPYPQHMNAGRPPH 322
P P PQ PP
Sbjct: 424 PQ------GAP-PQGAPPAAPPQ 439
Score = 35.7 bits (82), Expect = 0.025
Identities = 27/89 (30%), Positives = 32/89 (35%), Gaps = 7/89 (7%)
Query: 203 SASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSG 262
+S + +AQ + M Q + PPP PP P P G
Sbjct: 358 ESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQG-YPPQGYP--PQG 414
Query: 263 YPGAGGPYP-PPQQYPGASQPLAPRPPHG 290
YP G YP PPQ P P A PP G
Sbjct: 415 YPPQG--YPPPPQGAPPQGAPPAA-PPQG 440
Score = 30.3 bits (68), Expect = 1.2
Identities = 19/68 (27%), Positives = 19/68 (27%), Gaps = 6/68 (8%)
Query: 270 YPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHYPPHPGS 329
Q A PP G P P YP Y YP G PP P P
Sbjct: 372 KEMMAMMQKMQQQQAAYPPQGYAPPP-QGYPPQGYPPQGYPPQ-----GYPPQGYPPPPQ 425
Query: 330 QHPHQNCA 337
P Q
Sbjct: 426 GAPPQGAP 433
Score = 29.1 bits (65), Expect = 2.3
Identities = 21/84 (25%), Positives = 24/84 (28%), Gaps = 5/84 (5%)
Query: 255 PRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYP-YPYPQ---YPTHPYYGNAYP 310
+ A QQ Q AP PP G P PQ +P G P
Sbjct: 365 SADAAQMKEMMAMMQKMQQQQAAYPPQGYAP-PPQGYPPQGYPPQGYPPQGYPPQGYPPP 423
Query: 311 YPQHMNAGRPPHYPPHPGSQHPHQ 334
G PP PP +Q
Sbjct: 424 PQGAPPQGAPPAAPPQGVDNQAYQ 447
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 42.8 bits (100), Expect = 2e-04
Identities = 35/189 (18%), Positives = 45/189 (23%), Gaps = 31/189 (16%)
Query: 173 KKRKFVESSEQFQEELKKPGMGPEGYLNRLSASPVLTAPVSAQGPPPGPSVP---PMHGG 229
+ PEG + +P +P+ G P P+ G
Sbjct: 1457 MNYSLGTAVPTLAGSGMGTSQLPEG-----AGTPYERSPMVDSGFVGSPDAAAFSPLVQG 1511
Query: 230 QTGPVATVHHPPPSQG---GHGAMLPPHPRPGSPSGYPGAGGP---YPPPQQYPGASQPL 283
+ G P + P S + PG G Y P S
Sbjct: 1512 GSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAY 1571
Query: 284 APRPPHG-----QYPYPYPQY--------PTHPYYGNAYPYPQHMNAGRPPHYPPHPGSQ 330
P P Y P Y PT P Y P + P Y P S
Sbjct: 1572 MPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSP----SYSPTSPSYSPTSPSY 1627
Query: 331 HPHQNCAHP 339
P P
Sbjct: 1628 SPTSPSYSP 1636
Score = 38.5 bits (89), Expect = 0.004
Identities = 37/158 (23%), Positives = 47/158 (29%), Gaps = 21/158 (13%)
Query: 191 PGMGPEGYLNRLSASPVLTAPVSAQGPPPGPSVP---PMHGG--QTGPVATVHHPPPS-- 243
M P L S SP ++P + P PS P P T P + P S
Sbjct: 1545 SAMSPGYGLTSPSYSP--SSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1602
Query: 244 ------QGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPH-----GQY 292
+ P P SPS P + P Y S +P P Y
Sbjct: 1603 SPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1662
Query: 293 PYPYPQY-PTHPYYGNAYPYPQHMNAGRPPHYPPHPGS 329
P Y PT P Y P + P P + +
Sbjct: 1663 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1700
Score = 37.0 bits (85), Expect = 0.012
Identities = 26/99 (26%), Positives = 30/99 (30%), Gaps = 11/99 (11%)
Query: 213 SAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPP 272
S P P+ P T P + P S P SPS P + P
Sbjct: 1656 SPTSPSYSPTSPSYSP--TSPSYSPTSPSYSPTSPSYS------PTSPSYSPTSPSYSPT 1707
Query: 273 PQQYPGASQPLAPRPPHGQYPYPYPQY-PTHPYYGNAYP 310
Y S +P P Y P Y PT P Y P
Sbjct: 1708 SPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSYSPTSP 1744
Score = 36.2 bits (83), Expect = 0.020
Identities = 34/125 (27%), Positives = 38/125 (30%), Gaps = 15/125 (12%)
Query: 211 PVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPY 270
P S P PS P T P + P S P P SPS P +
Sbjct: 1615 PTSPSYSPTSPSYSP-----TSPSYS----PTSPSYSPT--SPSYSPTSPSYSPTSPSYS 1663
Query: 271 PPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYP-YPQHMNAGRP--PHYPPHP 327
P Y S +P P P PT P Y P Y + P P Y P
Sbjct: 1664 PTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1722
Query: 328 GSQHP 332
S P
Sbjct: 1723 PSYSP 1727
Score = 27.7 bits (61), Expect = 8.6
Identities = 17/76 (22%), Positives = 23/76 (30%), Gaps = 1/76 (1%)
Query: 213 SAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPP 272
S P P+ P T P+ + P + P SPS P + P
Sbjct: 1677 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYSPT 1735
Query: 273 PQQYPGASQPLAPRPP 288
Y S +P P
Sbjct: 1736 SPSYSPTSPSYSPTSP 1751
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin,
armadillo repeat, nuclear receptor LIGA binding domain,
protein binding; HET: P6L; 2.76A {Homo sapiens}
Length = 352
Score = 41.9 bits (98), Expect = 2e-04
Identities = 24/113 (21%), Positives = 28/113 (24%), Gaps = 7/113 (6%)
Query: 217 PPPGPSVPPMHGGQTGPVATVHHPPPSQGGH--GAMLPPHPRPGSPSGYPGAGGPYPPPQ 274
+ M T A + S+G A LPP SP PP
Sbjct: 5 EAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHG 64
Query: 275 QYPGASQ--PLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHYPP 325
G R +YP PY P Y Y P P
Sbjct: 65 SLQGYQTYGHFPSRAIKSEYPDPYTSSPESI---MGYSYMDSYQTSSPASIPH 114
Score = 32.3 bits (73), Expect = 0.22
Identities = 19/154 (12%), Positives = 33/154 (21%), Gaps = 14/154 (9%)
Query: 201 RLSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQ----GGHGAMLPPHPR 256
+L A + + + + P+ PP + P
Sbjct: 3 KLEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPP 62
Query: 257 PGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYG---------N 307
GS GY G +P P P Y T
Sbjct: 63 HGSLQGYQ-TYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLK 121
Query: 308 AYPYPQHMNAGRPPHYPPHPGSQHPHQNCAHPET 341
P + A + ++ H+ +
Sbjct: 122 CEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGL 155
Score = 28.8 bits (64), Expect = 2.9
Identities = 17/89 (19%), Positives = 24/89 (26%), Gaps = 9/89 (10%)
Query: 199 LNRLSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPG 258
LN + P P ++PP HG G H P + P
Sbjct: 36 LNHAALPPTDYDRSPFVTSPISMTMPP-HGSLQGYQTYGHFPSRA--------IKSEYPD 86
Query: 259 SPSGYPGAGGPYPPPQQYPGASQPLAPRP 287
+ P + Y Y +S P
Sbjct: 87 PYTSSPESIMGYSYMDSYQTSSPASIPHL 115
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25,
CFIM68, CPSF5, CPSF6, CPSF, 3' END processing,
processing, cleavage factor; 2.90A {Homo sapiens} PDB:
3q2t_C
Length = 229
Score = 39.3 bits (91), Expect = 0.001
Identities = 14/85 (16%), Positives = 23/85 (27%), Gaps = 5/85 (5%)
Query: 221 PSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQYPGAS 280
+ + + G P G G P ++PG +
Sbjct: 150 QFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPA 209
Query: 281 QPLAPRPPHGQYPYPYPQYPTHPYY 305
P P PP +P Q H ++
Sbjct: 210 GPGGPPPP-----FPAGQTHHHHHH 229
Score = 38.5 bits (89), Expect = 0.002
Identities = 16/98 (16%), Positives = 21/98 (21%), Gaps = 12/98 (12%)
Query: 236 TVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYP 295
V M G GP R Q
Sbjct: 143 VVTPVNKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGS-----------SRAAFPQGGRG 191
Query: 296 YPQYPTHPYYGNAYPYPQHMNAGRPPHYPPHPGSQHPH 333
++P G+ +P G PP +P H H
Sbjct: 192 RGRFPGAVPGGDRFP-GPAGPGGPPPPFPAGQTHHHHH 228
Score = 35.1 bits (80), Expect = 0.023
Identities = 18/79 (22%), Positives = 22/79 (27%), Gaps = 1/79 (1%)
Query: 204 ASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGY 263
+ + Q S G+ GP QGG G P PG
Sbjct: 147 VNKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFP 206
Query: 264 PGAGGPYPPPQQYPGASQP 282
AG PPP +P
Sbjct: 207 GPAGPGGPPPP-FPAGQTH 224
Score = 32.8 bits (74), Expect = 0.15
Identities = 12/77 (15%), Positives = 18/77 (23%)
Query: 198 YLNRLSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRP 257
+N+ S A +G +P R
Sbjct: 146 PVNKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRF 205
Query: 258 GSPSGYPGAGGPYPPPQ 274
P+G G P+P Q
Sbjct: 206 PGPAGPGGPPPPFPAGQ 222
Score = 28.9 bits (64), Expect = 2.2
Identities = 9/66 (13%), Positives = 11/66 (16%), Gaps = 1/66 (1%)
Query: 209 TAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPG-SPSGYPGAG 267
T G P G P PG P +P
Sbjct: 163 TQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPAGQ 222
Query: 268 GPYPPP 273
+
Sbjct: 223 THHHHH 228
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil,
alanine, axial stagger, radius, SIDE-chain packing,
crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Length = 147
Score = 38.1 bits (88), Expect = 0.001
Identities = 21/137 (15%), Positives = 54/137 (39%), Gaps = 23/137 (16%)
Query: 59 AKAKGKQAQQAAEEREAQAQGFSGK--NADRRIDIQPAEDEDEQEDGYSVKHVAYARYLR 116
A K ++A++AA+E E + + + +++IQ E + ++ + A +Y
Sbjct: 22 ALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQ----EIQLKEAKHIAEDADRKYEE 77
Query: 117 NHRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKF---EAK 173
R + V+ + ++ + + + +LE EL+ + E K
Sbjct: 78 VAR--------------KLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDK 123
Query: 174 KRKFVESSEQFQEELKK 190
+ + + + E+ +
Sbjct: 124 VEELLSKNYHLENEVAR 140
Score = 28.9 bits (64), Expect = 1.5
Identities = 7/35 (20%), Positives = 16/35 (45%)
Query: 152 LTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQE 186
+ + +E EL + +E+ +K E+ + E
Sbjct: 1 MNRRIQLVEEELDRAQERLATALQKLEEAEKAADE 35
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 0.001
Identities = 21/133 (15%), Positives = 49/133 (36%), Gaps = 19/133 (14%)
Query: 90 DIQPAEDEDEQEDGYSVKHVAYARYLRNHRLINEIFSDSVVPDVRSVVTTNRMQVLKRQV 149
DI ++ ++ + K V ++ I S + + +++ + + R
Sbjct: 20 DILSVFEDAFVDN-FDCKDVQ--DMPKS------ILSKEEIDHI--IMSKDAVSGTLRLF 68
Query: 150 QSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKKPGMGPEGY---LNRLSASP 206
+L Q+++ +Q+ E+ KF+ + E ++P M Y +RL
Sbjct: 69 WTLLSKQEEM---VQKFVEEVLRINYKFL--MSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 207 VLTAPVSAQGPPP 219
+ A + P
Sbjct: 124 QVFAKYNVSRLQP 136
Score = 35.2 bits (80), Expect = 0.034
Identities = 16/100 (16%), Positives = 26/100 (26%), Gaps = 22/100 (22%)
Query: 98 DEQEDGYSVKHVAY----ARYLRNHRLINEIFSD----------SVVPDVRSVVTTNRMQ 143
D Y H+ + + L +F D S N +Q
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 144 VLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQ 183
LK + + K E + I F+ E+
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAIL--------DFLPKIEE 557
Score = 30.6 bits (68), Expect = 1.2
Identities = 16/135 (11%), Positives = 41/135 (30%), Gaps = 22/135 (16%)
Query: 26 CSKIPQCNENNFS--EYEKNLKAYHNSPQ-YLAYMAAKAKGKQ-AQQAAEEREAQAQGFS 81
C + ++ S E + + + + +K ++ Q+ EE F
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL 94
Query: 82 GKNADRRIDIQPAEDEDEQEDGYSVKHVAYARYLRNHRLINEIFSDSVVPDVRSVVTTNR 141
+ + QP+ Y + + +++D+ V +V
Sbjct: 95 -MSPIKTEQRQPSMMTRM----YIEQR-------------DRLYNDNQVFAKYNVSRLQP 136
Query: 142 MQVLKRQVQSLTMHQ 156
L++ + L +
Sbjct: 137 YLKLRQALLELRPAK 151
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes,
curvature membrane, structural genomics consortium;
1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Length = 243
Score = 38.6 bits (89), Expect = 0.002
Identities = 23/161 (14%), Positives = 51/161 (31%), Gaps = 32/161 (19%)
Query: 36 NFSEYEKNLKAYHNSPQYLA------YMAAKAKGKQAQQAAEEREAQAQGFSGKNADRRI 89
Y +K + L Y + + E+ + + F K D +
Sbjct: 60 ELRGYLAAIKGMQEASMKLTESLHEVYEPDWYGREDVKMVGEKCDVLWEDFHQKLVDGSL 119
Query: 90 DIQPAEDEDEQEDGYSVKHVAYARYLRNHRLINEIFSDSVVPDVRSVVTTNRMQVLKRQV 149
+ Q + R+ +L++ + +
Sbjct: 120 L--TLDTYLGQ-----FPDIKNRIAKRSRKLVD-------------------YDSARHHL 153
Query: 150 QSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190
++L ++K E+ + + EE+F+ ++ F E + QEEL
Sbjct: 154 EALQSSKRKDESRISKAEEEFQKAQKVFEEFNVDLQEELPS 194
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils,
endocytosis/exocytosis, protein complex,
endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A
2rnd_A
Length = 251
Score = 36.7 bits (84), Expect = 0.008
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 145 LKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190
+ +SL +KK EA++ + EE+ ++ F E + QEEL
Sbjct: 163 ARHHYESLQTAKKKDEAKIAKAEEELIKAQKVFEEMNVDLQEELPS 208
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring
E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A
{Saccharomyces cerevisiae}
Length = 371
Score = 35.7 bits (81), Expect = 0.022
Identities = 9/69 (13%), Positives = 11/69 (15%)
Query: 219 PGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQYPG 278
P GP P S S P P
Sbjct: 2 LTPLSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSSF 61
Query: 279 ASQPLAPRP 287
A + +
Sbjct: 62 AVPTIHFKE 70
Score = 30.7 bits (68), Expect = 0.82
Identities = 8/61 (13%), Positives = 17/61 (27%)
Query: 199 LNRLSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPG 258
L+ ++ + P Q P P +T ++ PP +
Sbjct: 5 LSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSSFAVP 64
Query: 259 S 259
+
Sbjct: 65 T 65
Score = 30.3 bits (67), Expect = 0.97
Identities = 12/73 (16%), Positives = 15/73 (20%), Gaps = 9/73 (12%)
Query: 255 PRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQH 314
P S GP QQ P Q P + T A P
Sbjct: 2 LTPLSAITVRSMEGPPTVQQQSP---------SVIRQSPTQRRKTSTTSSTSRAPPPTNP 52
Query: 315 MNAGRPPHYPPHP 327
+ +
Sbjct: 53 DASSSSSSFAVPT 65
Score = 29.1 bits (64), Expect = 2.6
Identities = 6/72 (8%), Positives = 16/72 (22%), Gaps = 5/72 (6%)
Query: 277 PGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHYPPHPGSQHPHQNC 336
P ++ + P + + P P + +
Sbjct: 4 PLSAITVRSMEGPPTVQQQSPSVIRQS-----PTQRRKTSTTSSTSRAPPPTNPDASSSS 58
Query: 337 AHPETGQLVFQE 348
+ + F+E
Sbjct: 59 SSFAVPTIHFKE 70
Score = 27.6 bits (60), Expect = 7.1
Identities = 9/64 (14%), Positives = 14/64 (21%), Gaps = 2/64 (3%)
Query: 203 SASPVLTAPVSAQGPPPGPSV--PPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSP 260
S +P+ V + PP P + + P S
Sbjct: 1 SLTPLSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSS 60
Query: 261 SGYP 264
P
Sbjct: 61 FAVP 64
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR
adaptor; 1.91A {Homo sapiens}
Length = 237
Score = 35.1 bits (80), Expect = 0.026
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 145 LKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEEL 188
+ ++++ +KK EA+ + EE+F + F + +++ EEL
Sbjct: 144 ARHHLEAVQNAKKKDEAKTAKAEEEFNKAQTVFEDLNQELLEEL 187
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.4 bits (78), Expect = 0.030
Identities = 9/56 (16%), Positives = 20/56 (35%), Gaps = 15/56 (26%)
Query: 155 HQKKLEAEL---------QQIEEKFEAKKRKFVESSEQFQEELKKPGMGPEGYLNR 201
+ E E ++++E A K E E+ +++L+ E +
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLE------EWNQRQ 127
Score = 30.5 bits (68), Expect = 0.53
Identities = 19/131 (14%), Positives = 31/131 (23%), Gaps = 66/131 (50%)
Query: 65 QAQQAAEE-------REAQAQGFSGKNADRRIDIQPAEDEDEQEDGYSVKHVAYARYLRN 117
QA + +E RE Q +R+ ++ D
Sbjct: 76 QADRLTQEPESIRKWREEQ---------RKRL-----QELDAAS---------------- 105
Query: 118 HRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKK-LEAELQQIEEKFEAKKRK 176
K Q KK LE Q+ E+ E K
Sbjct: 106 ----------------------------KVMEQEWREKAKKDLEEWNQRQSEQVEKNKIN 137
Query: 177 FVESSEQFQEE 187
+ + F ++
Sbjct: 138 NRIADKAFYQQ 148
Score = 29.7 bits (66), Expect = 1.2
Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 141 RMQVLKRQVQSLTMHQKKLEAELQQIEE---KFEAKKRKFVESSEQFQEELKK 190
R+Q + S M Q+ E + +EE + + K ++ + +
Sbjct: 97 RLQ--ELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQ 147
Score = 29.0 bits (64), Expect = 1.8
Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 147 RQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190
R+ Q + + A +E E K+ E +++ E+++K
Sbjct: 91 REEQRKRLQELD-AASKVMEQEWREKAKKDLEEWNQRQSEQVEK 133
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 35.6 bits (82), Expect = 0.031
Identities = 11/65 (16%), Positives = 17/65 (26%), Gaps = 11/65 (16%)
Query: 48 HN------SPQYLAYMAAKAKGKQAQQAAEEREAQAQ-----GFSGKNADRRIDIQPAED 96
P YL + + + RE A G + P D
Sbjct: 1450 KGGQAIVVHPDYLYGAITEDRYNEYVAKVSAREKSAYKFFHNGMIYNKLFVSKEHAPYTD 1509
Query: 97 EDEQE 101
E E++
Sbjct: 1510 ELEED 1514
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A
{Saccharomyces cerevisiae}
Length = 350
Score = 34.9 bits (79), Expect = 0.034
Identities = 10/52 (19%), Positives = 13/52 (25%)
Query: 241 PPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQY 292
+Q +G P P P Q G QP G+
Sbjct: 3 AKAQLSNGYNNPNVNASNMYGPPQNMSLPPPQTQTIQGTDQPYQYSQCTGRR 54
Score = 27.2 bits (59), Expect = 8.8
Identities = 11/47 (23%), Positives = 12/47 (25%), Gaps = 1/47 (2%)
Query: 252 PPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQ 298
G + A Y PPQ Q PY Y Q
Sbjct: 4 KAQLSNGYNNPNVNASNMYGPPQNMSLPPPQTQTIQGTDQ-PYQYSQ 49
>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB:
1dx1_A 1qlx_A 1qlz_A
Length = 219
Score = 34.4 bits (78), Expect = 0.040
Identities = 16/114 (14%), Positives = 21/114 (18%), Gaps = 2/114 (1%)
Query: 216 GPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQ 275
G P P G TG P + G+ G
Sbjct: 1 GSKKRP--KPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPH 58
Query: 276 YPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHYPPHPGS 329
G QP + Q TH + +M
Sbjct: 59 GGGWGQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVG 112
Score = 33.3 bits (75), Expect = 0.089
Identities = 14/94 (14%), Positives = 20/94 (21%), Gaps = 1/94 (1%)
Query: 240 PPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQY 299
P G+ P PG P GG + P + P
Sbjct: 8 PGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHG 67
Query: 300 PTHPYYGNAYPYPQHMNAGRPPHYPPHPGSQHPH 333
+ Q + P P + H
Sbjct: 68 GGWGQPHGGGGWGQ-GGTHGQWNKPSKPKTNMKH 100
Score = 31.4 bits (70), Expect = 0.37
Identities = 14/89 (15%), Positives = 17/89 (19%), Gaps = 1/89 (1%)
Query: 252 PPHPRPGSPSGYPGAGGP-YPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYP 310
P+PG G+ P P Q + P
Sbjct: 3 KKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGW 62
Query: 311 YPQHMNAGRPPHYPPHPGSQHPHQNCAHP 339
H PH G H P
Sbjct: 63 GQPHGGGWGQPHGGGGWGQGGTHGQWNKP 91
Score = 29.8 bits (66), Expect = 1.2
Identities = 20/84 (23%), Positives = 25/84 (29%), Gaps = 3/84 (3%)
Query: 215 QGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQ 274
QG P G PP GG G P GG G PH G G P+
Sbjct: 22 QGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWG---QPHGGGWGQPHGGGWGQPHGGGG 78
Query: 275 QYPGASQPLAPRPPHGQYPYPYPQ 298
G + +P + +
Sbjct: 79 WGQGGTHGQWNKPSKPKTNMKHVA 102
Score = 29.4 bits (65), Expect = 1.4
Identities = 20/110 (18%), Positives = 22/110 (20%)
Query: 215 QGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQ 274
G P G HGG G P GG G + P
Sbjct: 38 WGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTN 97
Query: 275 QYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHYP 324
A A G Y + P Y YP
Sbjct: 98 MKHVAGAAAAGAVVGGLGGYMLGSAMSRPLIHFGSDYEDRYYRENMHRYP 147
Score = 27.1 bits (59), Expect = 7.5
Identities = 20/110 (18%), Positives = 26/110 (23%), Gaps = 2/110 (1%)
Query: 211 PVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPY 270
+ P G HGG G P GG G P G P G G G
Sbjct: 26 GGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQ--PHGGGWGQPHGGGGWGQGG 83
Query: 271 PPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRP 320
Q + + G Y + ++ G
Sbjct: 84 THGQWNKPSKPKTNMKHVAGAAAAGAVVGGLGGYMLGSAMSRPLIHFGSD 133
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 33.9 bits (77), Expect = 0.066
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190
M +K+++Q L + E L + +E EA K+ + S+Q ++EL
Sbjct: 1 MDAIKKKMQML---KLDKENALDRADE-AEADKKAAEDRSKQLEDELVS 45
Score = 33.5 bits (76), Expect = 0.099
Identities = 25/133 (18%), Positives = 60/133 (45%), Gaps = 6/133 (4%)
Query: 58 AAKAKGKQAQQAAEEREAQAQGFSGKNADRRIDIQPAEDEDEQEDGYSVKHVAYARYLRN 117
A K ++A++AA+E E + + ++ E + ++ + A +Y
Sbjct: 108 TALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAK--HIAEDADRKYEEV 165
Query: 118 HRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKF 177
R + I SD + R+ ++ + L+ +++++ L+ L+ EK+ K+ K+
Sbjct: 166 ARKLVIIESDLERAEERAELSEGKCAELEEEIKTV---TNNLK-SLEAQAEKYSQKEDKY 221
Query: 178 VESSEQFQEELKK 190
E + ++LK+
Sbjct: 222 EEEIKVLSDKLKE 234
Score = 31.2 bits (70), Expect = 0.47
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190
R + +R V L LE EL + K++A + + ++
Sbjct: 237 TRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEL----DHALNDMTS 283
Score = 31.2 bits (70), Expect = 0.54
Identities = 11/53 (20%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 141 RMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSE---QFQEELKK 190
+MQ+LK ++ + EA+ + E++ + + + V + ++EL K
Sbjct: 7 KMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDK 59
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 33.7 bits (76), Expect = 0.088
Identities = 21/115 (18%), Positives = 27/115 (23%), Gaps = 8/115 (6%)
Query: 174 KRKFVESSEQFQEELKKPGMGPEGYLNRLSASPVLTAPVSAQGPPPGPSVPPMHGGQTGP 233
+R+ S F L P GY+ L P SA P P +
Sbjct: 6 RRRL--SDSNFMANL------PNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERAST 57
Query: 234 VATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPP 288
A V P G + A +Q G S
Sbjct: 58 AAPVASPAAPSPGSSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGA 112
Score = 32.9 bits (74), Expect = 0.17
Identities = 11/73 (15%), Positives = 15/73 (20%), Gaps = 8/73 (10%)
Query: 219 PGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQYPG 278
P + + Q P P + P S A P PG
Sbjct: 19 PNGYMTDLQRPQPPPPPPSAASPGA--------TPGSAAASAERASTAAPVASPAAPSPG 70
Query: 279 ASQPLAPRPPHGQ 291
+S
Sbjct: 71 SSGGGGFFSSLSN 83
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.092
Identities = 34/210 (16%), Positives = 63/210 (30%), Gaps = 76/210 (36%)
Query: 38 SEYEKNLKAYHNSPQYLAYMAAKAKGKQAQQAAEEREAQAQGFSGKNADRRIDIQPAEDE 97
S + KA L ++ G + +A + P+ E
Sbjct: 291 SFFVSVRKAI----TVLFFI-----GVRCYEAY----------------PNTSLPPSILE 325
Query: 98 DEQEDGY-------SV---------KHVAYAR-YLRNHRLINEIFSDSVV--PDVRSVVT 138
D E+ S+ +V +L + + EI S+V +++V
Sbjct: 326 DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV-EI---SLVNGA--KNLVV 379
Query: 139 TNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFV----------------ESSE 182
+ Q L +L + K + L Q F +K KF +S+
Sbjct: 380 SGPPQSLYGLNLTL--RKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASD 437
Query: 183 QFQEELKKPGMGPEGYLNRLSASPVLTAPV 212
++L K + +A + PV
Sbjct: 438 LINKDLVKNNV-------SFNAKD-IQIPV 459
Score = 33.5 bits (76), Expect = 0.14
Identities = 19/107 (17%), Positives = 36/107 (33%), Gaps = 32/107 (29%)
Query: 162 ELQQIEEKFEAKKRKFVE-SSEQFQEELKKP---------GMGPEGYLNRLSASP----V 207
EL+ + + + ++ S+E E ++ G+ +L S +P +
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231
Query: 208 LTAPVS------AQ-----------GPPPGPSVPPMHGGQTGPVATV 237
L+ P+S Q G PG + G TG +
Sbjct: 232 LSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA-TGHSQGL 277
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 33.7 bits (77), Expect = 0.12
Identities = 18/129 (13%), Positives = 38/129 (29%), Gaps = 16/129 (12%)
Query: 58 AAKAKGKQAQQAAEEREAQAQGFSGKNADRRIDIQPAEDEDEQEDGYSVKHVAYARYLRN 117
+ + E E +A+ + I E ++E
Sbjct: 1008 LLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKE--------------EK 1053
Query: 118 HRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKF 177
R E + + ++ L+ Q+ L K E ELQ + E + +
Sbjct: 1054 SRQELEKIKRKLEGESSD--LHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQK 1111
Query: 178 VESSEQFQE 186
+ ++ +E
Sbjct: 1112 NNALKKIRE 1120
Score = 31.0 bits (70), Expect = 0.75
Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 10/61 (16%)
Query: 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEK----------FEAKKRKFVESSEQFQEELK 189
+M L+ Q++ ++KL+ E + K E + K + + +E +
Sbjct: 955 QQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVS 1014
Query: 190 K 190
Sbjct: 1015 D 1015
Score = 30.2 bits (68), Expect = 1.5
Identities = 11/54 (20%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQ---FQEELKK 190
R++ Q + ++LE+ + ++E E++K ++ +Q EEL+
Sbjct: 1102 ARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEA 1155
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET:
MSE; 2.33A {Homo sapiens}
Length = 168
Score = 32.4 bits (73), Expect = 0.13
Identities = 20/157 (12%), Positives = 52/157 (33%), Gaps = 21/157 (13%)
Query: 34 ENNFSEYEKNLKAYHNSPQYLAYMAAKAKGKQAQQAAEEREAQAQGFSGKNADRRIDIQP 93
+ E L+ ++ L + +Q + RE Q +R ++
Sbjct: 12 QKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQ---------ERNRILEN 62
Query: 94 AEDEDEQEDGYSVKHVAYARYLRNHRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLT 153
++ + +++ + R R H R+ L+ +V+ L
Sbjct: 63 SKSQTDKDYYQLQAILEAERRDRGHD------------SEMIGDLQARITSLQEEVKHLK 110
Query: 154 MHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190
+ +K+E E ++ ++ +++ +LK
Sbjct: 111 HNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKS 147
>2pft_A Exocytosis protein; helix-turn-helix, endocytosis-exocytosis
complex; 2.25A {Mus musculus}
Length = 571
Score = 32.9 bits (74), Expect = 0.18
Identities = 21/229 (9%), Positives = 63/229 (27%), Gaps = 27/229 (11%)
Query: 22 SIGGCSKIPQCNENNFSEYEKNLKAYHNSPQYLAYMAAKAKGKQAQQAAEEREAQAQGFS 81
+ +I + + + Y+ + K + ++++
Sbjct: 113 VLRDVVRISRWLVEYGRNQDF-MNVYYQIRSSQLDRSIKGLKEHFRKSSSSSGVPYSPAI 171
Query: 82 GKNADRRIDIQPAEDEDEQEDGYSVKHVAYARYLR--------NHRLINEIFSDSVVPDV 133
+P + ++D V+ AY + +RL+ EI +
Sbjct: 172 PNKRKDTPTKKPIK-RPGRDDMLDVETDAYIHCVSAFVKLAQSEYRLLMEIIPEHHQKKT 230
Query: 134 RSVVTTNRMQVLKRQVQSLTMHQKKLEA---------------ELQQIEEKFEAK-KRKF 177
+ + + L + +++ +K L+Q + +F+ +
Sbjct: 231 FDSLIQDALDGLMLEGENIVSAARKAIIRHDFSTVLTVFPILRHLKQTKPEFDQVLQGTA 290
Query: 178 VESSEQFQEELKKPGMGPEGYLNRLSASPVLTAPVSAQGPPPGPSVPPM 226
+ + + L + + + P P +V +
Sbjct: 291 ASTKNKLPGLITSMETIGAKALEDFADN-IKNDPDKEYNMPKDGTVHEL 338
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing
cluster, hydrophobic core, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Length = 155
Score = 31.9 bits (72), Expect = 0.19
Identities = 22/127 (17%), Positives = 48/127 (37%), Gaps = 16/127 (12%)
Query: 64 KQAQQAAEEREAQAQGFSGKNADRRIDIQPAEDEDEQEDGYSVKHVAYARYLRNHRLINE 123
++A++ AE E ++ + + + Q + YS K Y ++ +++
Sbjct: 31 ERAEERAELSEGKSAELEEELKTVT---NNLKSLEAQAEKYSQKEDKYEEEIKV---LSD 84
Query: 124 IFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQ 183
+ R + +R V L LE EL + K++A + + ++
Sbjct: 85 KLKE----------AETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDK 134
Query: 184 FQEELKK 190
+E L K
Sbjct: 135 VEELLSK 141
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A
{Drosophila melanogaster} SCOP: a.238.1.1
Length = 244
Score = 32.5 bits (73), Expect = 0.19
Identities = 9/47 (19%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 146 KRQVQSLTMH--QKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190
+ Q+L + ++K + +L + E+ E +R + + + +EL
Sbjct: 149 RHSFQNLQANANKRKDDVKLTKGREQLEEARRTYEILNTELHDELPA 195
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix,
structural; 1.70A {Homo sapiens}
Length = 86
Score = 30.3 bits (69), Expect = 0.20
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190
M+ L+RQV LT + ++E E + E + K QEE+ +
Sbjct: 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK-------LQEEMLQ 43
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL
biogenesis/degradation, cell cycle, P transferase; HET:
GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A*
2vg4_A
Length = 284
Score = 32.2 bits (74), Expect = 0.22
Identities = 18/61 (29%), Positives = 22/61 (36%), Gaps = 8/61 (13%)
Query: 271 PPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHYPPHPGSQ 330
P P YP P +P +P+ P PY G P PQH + P P
Sbjct: 6 PAPDDYPTF-------PDTSTWPVVFPELPAAPYGGPCRP-PQHTSKAAAPRIPADRLPN 57
Query: 331 H 331
H
Sbjct: 58 H 58
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ,
heterodimer, transcription/DNA complex; 1.80A {Homo
sapiens} SCOP: a.38.1.1
Length = 88
Score = 30.0 bits (68), Expect = 0.29
Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 116 RNHRLINEIFSD--SVVPDVRSVVTTNRMQVLKR---QVQSLTMHQKKLEAELQQIEEKF 170
RN + F +P++ + ++ +LK+ + S+ ++KL +E + ++
Sbjct: 18 RNE--LKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRR 75
Query: 171 EAKKRK 176
E K K
Sbjct: 76 EQLKHK 81
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 32.0 bits (73), Expect = 0.33
Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 10/62 (16%)
Query: 139 TNRMQVLKRQVQSLTMHQKKLEAELQQIEEKF----------EAKKRKFVESSEQFQEEL 188
++ ++ +SL LE EK E + + QEE+
Sbjct: 934 QRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEI 993
Query: 189 KK 190
K
Sbjct: 994 AK 995
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle
protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Length = 101
Score = 30.2 bits (68), Expect = 0.35
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 8/51 (15%)
Query: 142 MQVLKRQVQSLTMHQKKLEAE--LQQIEEKFEAKKRKFVESSEQFQEELKK 190
M +K+++Q L KL+ E L + E+ EA K+ E S+Q ++++ +
Sbjct: 4 MDAIKKKMQML-----KLDKENALDRAEQ-AEADKKAAEERSKQLEDDIVQ 48
>1few_A Second mitochondria-derived activator of caspases; SMAC, diablo,
apoptosis, caspase activation, IAP inhibition; 2.20A
{Homo sapiens} SCOP: a.7.4.1
Length = 184
Score = 30.7 bits (68), Expect = 0.47
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 132 DVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKKP 191
D S+ N +Q++K QV+ + +K E +L E + E K+K E E+ E
Sbjct: 122 DQASITARNHIQLVKLQVEEVHQLSRKAETKLA--EAQIEELKQKTQEEGEERAESE--- 176
Query: 192 GMGPEGYL 199
E YL
Sbjct: 177 ---QEAYL 181
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 31.5 bits (71), Expect = 0.49
Identities = 13/83 (15%), Positives = 18/83 (21%), Gaps = 6/83 (7%)
Query: 260 PSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGR 319
P+ G P P P PP PT P++ R
Sbjct: 2 PAAPTSPGTPGVAAATQAANGGPATPAPPAL------GAAPTGDPKPKKNKKPKNPTPPR 55
Query: 320 PPHYPPHPGSQHPHQNCAHPETG 342
P + H +
Sbjct: 56 PAGDNATVAAGHATLREHLRDIK 78
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein,
nuclear protein, neurogenesis, cytosk LIS1 binding,
differentiation; 2.24A {Rattus norvegicus}
Length = 189
Score = 30.9 bits (69), Expect = 0.52
Identities = 9/51 (17%), Positives = 23/51 (45%)
Query: 140 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190
Q + ++ ++LEAEL+ + E + R +++ + E++
Sbjct: 24 QSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEA 74
Score = 29.3 bits (65), Expect = 1.5
Identities = 7/49 (14%), Positives = 26/49 (53%)
Query: 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190
+ +++ + L ++L+ E++ ++EK E + + + +++L +
Sbjct: 51 LVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQ 99
Score = 28.9 bits (64), Expect = 1.9
Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 15/129 (11%)
Query: 64 KQAQQAAEEREAQAQGFSGKNADRRIDIQPAEDEDEQEDGYSVKHVAYARYLRNHRLINE 123
+ +++ E EAQ +N D + D Q + E E + + +
Sbjct: 38 EGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEA---------LKEKLEHQYAQSYK 88
Query: 124 IFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEK---FEAKKRKFVES 180
S + T + L + V+ L LE + FE + + +E
Sbjct: 89 QVSVL---EDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIER 145
Query: 181 SEQFQEELK 189
+ + EL
Sbjct: 146 NAFLESELD 154
Score = 28.2 bits (62), Expect = 3.1
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 145 LKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190
LK + K + Q+ ++ +F E S + + EL+
Sbjct: 8 LKEETAYWKELSMKYKQSFQEARDELV----EFQEGSRELEAELEA 49
>1xpp_A TA1416, DNA-directed RNA polymerase subunit L; structural genomics,
protein structure initiative, MCSG; 1.60A {Thermoplasma
acidophilum} SCOP: d.74.3.2
Length = 115
Score = 29.9 bits (67), Expect = 0.57
Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 17/73 (23%)
Query: 107 KHVAYARYLRNHRLINEIFSDSVVPDVRSVVTTNR--MQVLKRQVQSLTMHQKKLEAELQ 164
V ARY H +I+ P + V + +KR V +KL +
Sbjct: 46 DQVDEARYYIKHPVIDN-------PQIY-VRVKSGKPQSAIKRAV-------RKLSKLYE 90
Query: 165 QIEEKFEAKKRKF 177
+ +F+ + +++
Sbjct: 91 DLGTQFQKEFQRY 103
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 30.8 bits (69), Expect = 0.59
Identities = 20/119 (16%), Positives = 42/119 (35%), Gaps = 6/119 (5%)
Query: 83 KNADRRIDIQPAE-DEDEQEDGYSVKHVAYARYLRNHRLINEIFSDSVVPDVRSVVTTNR 141
K +D + P ++E + + L LI I S + S +
Sbjct: 9 KASDGNLLGDPGRIPLSKRESIKWQRPRFTRQALMRCCLIKWILSSAAPQGSDSSDSELE 68
Query: 142 MQVLKRQVQSLTMHQKKL---EAELQQIEEKFEAKKRKFVESSEQFQEELKKPGMGPEG 197
+ ++ Q + L Q + + ELQ + F+ + + + F+ + P+G
Sbjct: 69 LSTVRHQPEGLDQLQAQTKFTKKELQSLYRGFKNECPTGLVDEDTFKLIYSQ--FFPQG 125
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A
{Saccharomyces cerevisiae} PDB: 3onx_A
Length = 141
Score = 29.9 bits (67), Expect = 0.66
Identities = 12/62 (19%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 129 VVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEEL 188
V+ +R V R Q K+++++++ + +A++ +++E + +K + + ++ EL
Sbjct: 36 VIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHW---KKTWEAEL 92
Query: 189 KK 190
K
Sbjct: 93 DK 94
>3trd_A Alpha/beta hydrolase; cellular processes; 1.50A {Coxiella burnetii}
Length = 208
Score = 30.4 bits (68), Expect = 0.67
Identities = 16/126 (12%), Positives = 26/126 (20%), Gaps = 14/126 (11%)
Query: 228 GGQTGPVATVHHPPPSQGGHG---------AMLPPHPRPGSPSGYPGAGGPYPPPQQYPG 278
G + + HP P GG L + G G G
Sbjct: 27 GIEKSVTGIICHPHPLHGGTMNNKVVTTLAKALDELGLKTVRFNFRGVGKSQGRYDNGVG 86
Query: 279 ASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPH-----YPPHPGSQHPH 333
+ L ++ + + AY + + P
Sbjct: 87 EVEDLKAVLRWVEHHWSQDDIWLAGFSFGAYISAKVAYDQKVAQLISVAPPVFYEGFASL 146
Query: 334 QNCAHP 339
A P
Sbjct: 147 TQMASP 152
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal
toxic shock S; 3.30A {Streptococcus pyogenes}
Length = 146
Score = 29.8 bits (66), Expect = 0.74
Identities = 19/139 (13%), Positives = 53/139 (38%), Gaps = 22/139 (15%)
Query: 58 AAKAKGKQAQQAAEEREAQAQGFSGKNADRRIDIQPAEDEDEQEDGYSVKHVAYARYLRN 117
K + A A +A + +++ ++ A D+ Q+ + +
Sbjct: 14 EKKEALELAIDQASRDYHRATALEKELEEKKKALELAIDQASQDYNRANVLEKELEAITR 73
Query: 118 HRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAK---- 173
+ IN N + K ++ L+ +++L E ++EE+ +
Sbjct: 74 EQEINR----------------NLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISDASR 117
Query: 174 --KRKFVESSEQFQEELKK 190
R+ +++S + +++++K
Sbjct: 118 QSLRRDLDASREAKKQVEK 136
>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin
fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A
4afr_A
Length = 367
Score = 30.7 bits (68), Expect = 0.80
Identities = 11/75 (14%), Positives = 18/75 (24%), Gaps = 1/75 (1%)
Query: 240 PPPSQGGHGAMLPPHPRPGSPSGYPGAG-GPYPPPQQYPGASQPLAPRPPHGQYPYPYPQ 298
P +++ G + Y G G Q Y + L P P +
Sbjct: 14 LVPGGSHMCSLITQLCDAGQLADYVGLGWLNAVSSQPYLVQALGLQPPPRRVDVDAAFRD 73
Query: 299 YPTHPYYGNAYPYPQ 313
+ P
Sbjct: 74 AKGLHGHQPWVATPL 88
Score = 30.0 bits (66), Expect = 1.2
Identities = 12/85 (14%), Positives = 20/85 (23%), Gaps = 1/85 (1%)
Query: 221 PSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQYPGAS 280
S G + T + + + P G PP + A+
Sbjct: 11 SSGLVPGGSHMCSLITQLCDAGQLADYVGLGWLNAVSSQPYLVQALGLQPPPRRVDVDAA 70
Query: 281 QPLAPRPPHGQYPYPYPQYPTHPYY 305
+ HG P+ P
Sbjct: 71 FR-DAKGLHGHQPWVATPLPGQTVR 94
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 30.0 bits (66), Expect = 0.84
Identities = 24/147 (16%), Positives = 33/147 (22%), Gaps = 3/147 (2%)
Query: 203 SASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSG 262
A+P T P S GP VPP P P+
Sbjct: 21 GATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISVTTPSQPAE 80
Query: 263 YPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPH 322
G P + A P + G PP
Sbjct: 81 ASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATVNGTVEGGSGAGRLDLPPG 140
Query: 323 YPPHPGSQHPHQNCAHPETGQLVFQEG 349
+ +QH +T +L + G
Sbjct: 141 FMFKVQAQHD---YTATDTDELQLKAG 164
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition,
kinase-INH complex, rubredoxin fold, TPR domain,
transferase; HET: AXX; 2.40A {Mycobacterium
tuberculosis}
Length = 681
Score = 30.6 bits (69), Expect = 0.86
Identities = 9/103 (8%), Positives = 17/103 (16%)
Query: 201 RLSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSP 260
+ V +S P + V + ++ P
Sbjct: 331 VAQDTGVPRPGLSTIFSPSRSTFGVDLLVAHTDVYLDGQVHAEKLTANEIVTALSVPLVD 390
Query: 261 SGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHP 303
A P + HG +
Sbjct: 391 PTDVAASVLQATVLSQPVQTLDSLRAARHGALDADGVDFSESV 433
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 30.1 bits (68), Expect = 0.88
Identities = 10/26 (38%), Positives = 11/26 (42%)
Query: 262 GYPGAGGPYPPPQQYPGASQPLAPRP 287
G+PGAGG Y P P P
Sbjct: 5 GHPGAGGGYYPGGYGGAPGGPAFPGQ 30
Score = 29.7 bits (67), Expect = 0.97
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 252 PPHPRPGSPSGYPGAGGPYPPPQQYPGASQP 282
P HP G YPG G P +PG +Q
Sbjct: 4 PGHPGAG-GGYYPGGYGGAPGGPAFPGQTQD 33
Score = 29.0 bits (65), Expect = 2.0
Identities = 7/30 (23%), Positives = 7/30 (23%)
Query: 262 GYPGAGGPYPPPQQYPGASQPLAPRPPHGQ 291
YPG G P P P
Sbjct: 2 AYPGHPGAGGGYYPGGYGGAPGGPAFPGQT 31
Score = 27.4 bits (61), Expect = 6.0
Identities = 11/35 (31%), Positives = 12/35 (34%), Gaps = 3/35 (8%)
Query: 299 YPTHPYYGNAYPYPQHMNAGRPPHYPPHPGSQHPH 333
YP HP G Y + G P P PG
Sbjct: 3 YPGHPGAGGGYYPGGY---GGAPGGPAFPGQTQDP 34
Score = 26.7 bits (59), Expect = 9.7
Identities = 11/34 (32%), Positives = 12/34 (35%), Gaps = 6/34 (17%)
Query: 242 PSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQ 275
P G G P G+P GGP P Q
Sbjct: 4 PGHPGAGGGYYPGGYGGAP------GGPAFPGQT 31
>3lj5_A Portal protein, protein GP1; DNA ejection, molecular motor, DNA
packaging podoviridae, virus assembly, tail tube, trunk
domain; 7.50A {Enterobacteria phage P22}
Length = 725
Score = 30.4 bits (67), Expect = 1.1
Identities = 24/147 (16%), Positives = 45/147 (30%), Gaps = 10/147 (6%)
Query: 50 SPQYLAYMAAKAKGKQAQQAAEEREAQAQGFSGKNADRRIDIQPAEDEDEQEDGYSVKHV 109
+P+ ++ + KQ QQ +AQ G+ + + Q D V+
Sbjct: 586 TPEEQQWLVEAQQAKQGQQDPAMVQAQGVLLQGQAELAKAQ---NQTLSLQIDAAKVEAQ 642
Query: 110 AYARYLRNHRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEK 169
R + N + D+ Q + AEL ++
Sbjct: 643 NQLNAARIAEIFNNM-------DLSKQSEFREFLKTVASFQQDRSEDARANAELLLKGDE 695
Query: 170 FEAKKRKFVESSEQFQEELKKPGMGPE 196
K+R + + Q Q + + G E
Sbjct: 696 QTHKQRMDIANILQSQRQNQPSGSVAE 722
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament,
structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Length = 93
Score = 28.3 bits (64), Expect = 1.1
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 145 LKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKF 177
L+RQV LT + ++E E + E + K
Sbjct: 61 LRRQVDQLTNDKARVEVERDNLAEDIMRLREKL 93
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil,
hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Length = 251
Score = 30.2 bits (67), Expect = 1.1
Identities = 27/150 (18%), Positives = 53/150 (35%), Gaps = 26/150 (17%)
Query: 41 EKNLKAYHNSPQYLAYMAAKAKGKQAQQAAEEREAQAQGFSGKNADRRIDIQPAEDEDEQ 100
+ K H + Q A + A+ KQ + +E+ + K+ ++++ + +
Sbjct: 98 IRRRKEQHATEQT-AKITELAREKQIAELKALKESSES--NIKDIKKKLEAKRLDRIQVM 154
Query: 101 EDGYSVKHVAYARYLRNHRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLE 160
S K RL EI + + +Q + + ++ LT + +
Sbjct: 155 MRSTSDKAAQ-------ERLKKEINN-------------SHIQEVVQTIKLLTEKTARYQ 194
Query: 161 AELQQIEEKFEAKKRKFVESSEQFQEELKK 190
+L EEK R E Q Q+E
Sbjct: 195 QKL---EEKQAENLRAIQEKEGQLQQEAVA 221
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein,
developmental protein, structural protei
phosphorylation, transport, microtubule; 2.10A {Homo
sapiens}
Length = 111
Score = 28.8 bits (64), Expect = 1.2
Identities = 9/50 (18%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 141 RMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190
R + L+ Q +L+ E++ ++EK E + + + +++L +
Sbjct: 4 RNRDLQADNQ-------RLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQ 46
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 30.3 bits (67), Expect = 1.2
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 145 LKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190
L +VQ Q+ L +Q ++F K ++ + +E LK
Sbjct: 617 LTTKVQESLKKQEGLLKNIQVSHQEFS-KMKQSNNEANLREEVLKN 661
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr
kinase, pseudokinase, FHA domain, REG phosphorylation;
HET: TPO; 2.71A {Mycobacterium tuberculosis}
Length = 157
Score = 29.1 bits (65), Expect = 1.4
Identities = 10/56 (17%), Positives = 14/56 (25%)
Query: 238 HHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYP 293
HH G+ +P P+G G P A + G
Sbjct: 8 HHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYGS 63
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 29.9 bits (67), Expect = 1.4
Identities = 12/92 (13%), Positives = 22/92 (23%)
Query: 199 LNRLSASPVLTAPVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPG 258
+ L + + +A + G + + G + P
Sbjct: 542 TSSLFRTEPMAWNETADLGLDIGAQGEPLGYRQDDPSYRSFHSGGYGQDALGMDPMMEHE 601
Query: 259 SPSGYPGAGGPYPPPQQYPGASQPLAPRPPHG 290
+PGA P A + PP
Sbjct: 602 MGGHHPGADYPVDGLPDLGHAQDLMDGLPPGD 633
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 29.9 bits (66), Expect = 1.4
Identities = 25/152 (16%), Positives = 62/152 (40%), Gaps = 22/152 (14%)
Query: 39 EYEKNLKAYHNSPQYLAYMAAKAKGKQAQQAAEEREAQAQGFSGKNADRRIDIQPAEDED 98
+ E+ L+ Y S + + + ++ E + + S + + + + ++E
Sbjct: 456 QAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQ 515
Query: 99 EQEDGYSVKHVAYARYLRNHRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKK 158
E K +Y +L+ +L ++ +D R+Q+LK Q + K
Sbjct: 516 MMEQ----KERSYQEHLK--QLTEKMEND-------------RVQLLKEQER---TLALK 553
Query: 159 LEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190
L+ + Q ++E F+ + R + Q ++++
Sbjct: 554 LQEQEQLLKEGFQKESRIMKNEIQDLQTKMRR 585
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence
factor, S active protein, toxin; 3.04A {Streptococcus
pyogenes serotype M1} PDB: 2xny_M
Length = 155
Score = 28.9 bits (63), Expect = 1.7
Identities = 6/50 (12%), Positives = 22/50 (44%)
Query: 141 RMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190
++ + L ++ LE + + +E K + ++ + + E + ++
Sbjct: 44 VAGRDFKRAEELEKAKQALEDQRKDLETKLKELQQDYDLAKESTSWDRQR 93
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae}
SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB:
1pd0_A 1pd1_A
Length = 810
Score = 29.6 bits (65), Expect = 2.0
Identities = 9/42 (21%), Positives = 10/42 (23%)
Query: 262 GYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHP 303
P G P Q L P + P P P
Sbjct: 1 AAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPP 42
>1g73_A SMAC/diablo, second mitochondria-derived activator of caspases;
helix bundle, zinc-binding domain, apoptosis/apoptosis
inhibitor complex; 2.00A {Homo sapiens} SCOP: a.7.4.1
Length = 162
Score = 28.6 bits (63), Expect = 2.0
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 132 DVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEK 169
D S+ N +Q++K QV+ + +K E +L + + +
Sbjct: 122 DQASITARNHIQLVKLQVEEVHQLSRKAETKLAEAQIE 159
>3ayx_A Membrane-bound hydrogenase large subunit; oxidoreductase,
membrane-bound NI-Fe hydrogenase; 1.18A {Hydrogenovibrio
marinus} PDB: 3ayy_A 3ayz_A 3rgw_L
Length = 596
Score = 29.4 bits (65), Expect = 2.2
Identities = 12/66 (18%), Positives = 19/66 (28%), Gaps = 1/66 (1%)
Query: 288 PHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHYPPHPGSQHPHQNCA-HPETGQLVF 346
H Y YP HP+ G P + + + + + P
Sbjct: 349 THSWYKYPDETKGLHPWDGITEPNYELGSKTKGSRTNIIEIDESAKYSWIKSPRWRGHAV 408
Query: 347 QEGVLA 352
+ G LA
Sbjct: 409 EVGPLA 414
>3m5q_A Manganese peroxidase 1; heme, Mn(II)-binding site, Ca(II)-binding
site, glycosylation, ultrahigh resolution, calcium; HET:
NAG MAN HEM; 0.93A {Phanerochaete chrysosporium} PDB:
1mnp_A* 1yyg_A* 1yzp_A* 1yzr_A* 1yyd_A* 3m8m_A* 1mn1_A*
1mn2_A*
Length = 357
Score = 29.1 bits (65), Expect = 2.4
Identities = 16/60 (26%), Positives = 20/60 (33%), Gaps = 11/60 (18%)
Query: 252 PPHPRPGSPSGYPG-----------AGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYP 300
P P G P+ +P +P PGASQ L P G P Q+
Sbjct: 295 VPKPATGQPAMFPASTGPQDLELSCPSERFPTLTTQPGASQSLIAHCPDGSMSCPGVQFN 354
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 27.9 bits (62), Expect = 2.4
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 158 KLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190
+ E E+ ++E+F K E SE ++EL++
Sbjct: 10 EREKEMASMKEEFTRLKEAL-EKSEARRKELEE 41
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A
{Homo sapiens}
Length = 273
Score = 28.9 bits (64), Expect = 2.5
Identities = 7/59 (11%), Positives = 27/59 (45%)
Query: 132 DVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190
++R+ + + +V ++ +L Q++LE Q+ + + + + + +++
Sbjct: 26 ELRARLLPHANEVSQKIGDNLRELQQRLEPYADQLRTQVNTQAEQLRRQLTPYAQRMER 84
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A
{Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A*
3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A*
4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A*
1gg9_A* 1ggf_A* ...
Length = 753
Score = 29.3 bits (66), Expect = 2.5
Identities = 16/82 (19%), Positives = 20/82 (24%)
Query: 239 HPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQ 298
P Q +PG S P G P + P +QP AP
Sbjct: 6 EKNPHQHQSPLHDSSEAKPGMDSLAPEDGSHRPAAEPTPPGAQPTAPGSLKAPDTRNEKL 65
Query: 299 YPTHPYYGNAYPYPQHMNAGRP 320
+ Y N G
Sbjct: 66 NSLEDVRKGSENYALTTNQGVR 87
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 29.0 bits (64), Expect = 2.6
Identities = 9/46 (19%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 146 KRQVQSLTMHQKKLEAELQQIEE-KFEAKKRKFVESSEQFQEELKK 190
++ ++L K+LE + +Q E+ K + ++ + + L+K
Sbjct: 365 EQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQNSSRTLEK 410
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support,
cytosolic protein; 3.00A {Homo sapiens}
Length = 131
Score = 27.9 bits (63), Expect = 2.8
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 7/35 (20%)
Query: 145 LKRQVQSLTM---HQKK----LEAELQQIEEKFEA 172
L+R +Q+L + Q LE L++ + ++
Sbjct: 43 LRRTMQNLEIELQSQLSMKASLENSLEETKGRYCM 77
>3uqy_L Hydrogenase-1 large chain; membrane-bound hydrogenase,
oxidoreductase; HET: LMT; 1.47A {Escherichia coli} PDB:
3usc_L* 3use_L*
Length = 582
Score = 29.1 bits (64), Expect = 2.9
Identities = 14/65 (21%), Positives = 19/65 (29%)
Query: 288 PHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHYPPHPGSQHPHQNCAHPETGQLVFQ 347
H Y YP Q HP+ G P+ + Q + P +
Sbjct: 350 DHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAME 409
Query: 348 EGVLA 352
G LA
Sbjct: 410 VGPLA 414
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural
genomics consortium, BCR, CR associated substrate,
transferase; 2.18A {Homo sapiens}
Length = 406
Score = 29.0 bits (64), Expect = 2.9
Identities = 8/44 (18%), Positives = 19/44 (43%)
Query: 126 SDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEK 169
+ V+ + +Q + +Q Q KL+A+ + ++ K
Sbjct: 345 NTHPRERVQLLGKRQVLQEALQGLQVALCSQAKLQAQQELLQTK 388
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus} PDB: 3lvh_A
Length = 624
Score = 28.8 bits (64), Expect = 3.4
Identities = 10/42 (23%), Positives = 10/42 (23%)
Query: 241 PPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQQYPGASQP 282
P G ML P P P G P P
Sbjct: 580 PIVYGQPQLMLTAGPSVAVPPQAPFGYGYTAPAYGQPQPGFG 621
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold
shock domain, ssDNA binding, DNA B protein; 2.80A {Homo
sapiens}
Length = 147
Score = 27.7 bits (61), Expect = 3.7
Identities = 12/41 (29%), Positives = 14/41 (34%)
Query: 218 PPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPG 258
PP P PP H G + T S + P P P
Sbjct: 5 PPPPPQPPTHQASVGLLDTPRSRERSPSPLRGNVVPSPLPT 45
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support,
cytosolic protein; 3.00A {Homo sapiens}
Length = 129
Score = 27.5 bits (62), Expect = 3.9
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 7/35 (20%)
Query: 145 LKRQVQSLTM---HQKK----LEAELQQIEEKFEA 172
+ R +Q L + KK L+ + E++ E
Sbjct: 41 MNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGEL 75
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative,
no structural genomics consortium, NESG, structural
protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Length = 119
Score = 27.2 bits (61), Expect = 4.2
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 145 LKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKF 177
L+RQV LT + ++E E + E + K
Sbjct: 25 LRRQVDQLTNDKARVEVERDNLAEDIMRLREKL 57
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 28.7 bits (64), Expect = 4.3
Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 5/57 (8%)
Query: 50 SPQYLAYMAAKAKGKQAQQAAEEREAQAQ-----GFSGKNADRRIDIQPAEDEDEQE 101
P+YL KA+ + + R+ +A G D P ED + +
Sbjct: 1638 HPKYLFATLDKAQYEAYCVKVQARQKKAYRFFHNGLINNKLFVAKDKAPYEDRIQSK 1694
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo
sapiens} PDB: 3odr_A 3ods_A 3o2q_A* 3o2s_A
Length = 386
Score = 28.2 bits (62), Expect = 4.5
Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 9/96 (9%)
Query: 133 VRSVVTTNRMQ---VLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELK 189
V SV ++ VLK + +A++ + + + + ++ K
Sbjct: 285 VSSVRKNLKLHLLSVLKHPASL------EFQAQITTLLVDLGTPQAEIARNMPSSKDTRK 338
Query: 190 KPGMGPEGYLNRLSASPVLTAPVSAQGPPPGPSVPP 225
+P + L ++ P L + PGPS
Sbjct: 339 RPRDDSDSTLKKMKLEPNLGEDDEDKDLEPGPSGTS 374
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime
disease; NMR {Homo sapiens}
Length = 307
Score = 28.2 bits (62), Expect = 4.7
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 141 RMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190
R+ +K QV + + KLE + QQI + EA + + E E++++
Sbjct: 236 RLDEVKEQVAEV---RAKLEEQAQQIRLQAEAAQARLKSRFEPLAEDMQR 282
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 28.4 bits (63), Expect = 4.7
Identities = 11/57 (19%), Positives = 17/57 (29%), Gaps = 5/57 (8%)
Query: 50 SPQYLAYMAAKAKGKQAQQAAEEREAQAQ-----GFSGKNADRRIDIQPAEDEDEQE 101
P YL + + + RE A G + P DE E++
Sbjct: 1657 HPDYLYGAITEDRYNEYVAKVSAREKSAYKFFHNGMIYNKLFVSKEHAPYTDELEED 1713
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A
{Barmah forest virus}
Length = 253
Score = 28.1 bits (62), Expect = 5.0
Identities = 12/82 (14%), Positives = 20/82 (24%), Gaps = 3/82 (3%)
Query: 210 APVSAQGPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGP 269
APV P P P PP + + + + P
Sbjct: 17 APVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQKKPKKTPPPKPKK 76
Query: 270 YPPPQQYPGASQPLAPRPPHGQ 291
P++ +Q +P
Sbjct: 77 TQKPKK---PTQKKKSKPGKRM 95
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, infectious D center for structural genomics of
infectious diseases; HET: NAD; 2.05A {Bacillus anthracis
str} PDB: 3i3o_A*
Length = 291
Score = 27.9 bits (63), Expect = 5.0
Identities = 7/30 (23%), Positives = 8/30 (26%), Gaps = 3/30 (10%)
Query: 268 GPYPPPQQ---YPGASQPLAPRPPHGQYPY 294
P Q PG + P P Y
Sbjct: 10 FVTMPAQHQNKQPGIESLMNPLPQFEDPNY 39
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl
phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Length = 497
Score = 28.3 bits (63), Expect = 5.3
Identities = 13/111 (11%), Positives = 29/111 (26%), Gaps = 12/111 (10%)
Query: 156 QKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKKPGMGPEGYLNRLSASPVLTAPVSAQ 215
+ +E E+ ++++ E + + F +L G+ + + L+ L
Sbjct: 7 RGTVEKEVTKVKQSIEDELIRSDSQLMNF-PQLPSNGIPQDDVIEELNKLNDLIPHTQ-- 63
Query: 216 GPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGA 266
G +G V P +P
Sbjct: 64 ---------WKEGKVSGAVYHGGDDLIHLQTIAYEKYCVANQLHPDVFPAV 105
>3kio_A Ribonuclease H2 subunit A; aicardi-goutieres syndrome, RNAse H2,
protein complex, autoimmune disease, endonuclease,
hydrolase, metal-binding; 2.90A {Mus musculus} PDB:
3p5j_A 3puf_A 3p56_A
Length = 301
Score = 27.9 bits (62), Expect = 5.4
Identities = 8/43 (18%), Positives = 10/43 (23%), Gaps = 2/43 (4%)
Query: 291 QYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHYPPHPGSQHPH 333
Q+ + G YP A H P G
Sbjct: 195 QFVENLQDLDSDYGSG--YPNDPKTKAWLRKHVDPVFGFPQFV 235
>3iyo_A Capsid protein; amino acid sequence, cryoelectron microscopy,
dimerization, image processing, computer-assist
molecular sequence DATA; 10.50A {Hepatitis e virus}
Length = 660
Score = 28.4 bits (62), Expect = 5.4
Identities = 17/121 (14%), Positives = 28/121 (23%), Gaps = 3/121 (2%)
Query: 216 GPPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPSGYPGAGGPYPPPQ- 274
PPPG G ++G + + P+ P +P P+
Sbjct: 19 APPPGQPSGRRRGRRSGG--SGGGFWGDRVDSQPFAIPYIHPTNPFAPDVTAAAGAGPRV 76
Query: 275 QYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMNAGRPPHYPPHPGSQHPHQ 334
+ P A R + + PT + P
Sbjct: 77 RQPARPLGSAWRDQAQRPAVASRRRPTTAGAAPLTAVAPAHDTPPVPDVDSRGAILRRQY 136
Query: 335 N 335
N
Sbjct: 137 N 137
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase, nucleotide-binding; 3.20A {Archaeoglobus
fulgidus}
Length = 171
Score = 27.2 bits (61), Expect = 6.1
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 155 HQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190
+++E L++ + K ++ E+F EE K
Sbjct: 8 AVEEMERLLREASSILRVEPAKLPKTVERFFEEWKD 43
>3fn9_A Putative beta-galactosidase; structural genomics, glycosidas
hydrolase, PSI-2, protein structure initiative; 2.70A
{Bacteroides fragilis}
Length = 692
Score = 28.2 bits (63), Expect = 6.3
Identities = 6/37 (16%), Positives = 7/37 (18%), Gaps = 11/37 (29%)
Query: 302 HPYYGNAYPYPQH-----------MNAGRPPHYPPHP 327
G+A H R HY
Sbjct: 308 WWGLGSALKNEHHDFDLAAIMDVGATTVRFAHYQQSD 344
>3hn3_A Beta-G1, beta-glucuronidase; lysosomal enzyme, acid hydrolase,
glycosidase, disease mutat glycoprotein, hydrolase,
lysosome, mucopolysaccharidosis; HET: NDG NAG BMA MAN
GUP; 1.70A {Homo sapiens} PDB: 1bhg_A*
Length = 613
Score = 27.8 bits (62), Expect = 6.5
Identities = 8/37 (21%), Positives = 10/37 (27%), Gaps = 11/37 (29%)
Query: 302 HPYYGNAYPYPQH-----------MNAGRPPHYPPHP 327
G + +P NA R HYP
Sbjct: 334 ADIRGKGFDWPLLVKDFNLLRWLGANAFRTSHYPYAE 370
>1pn2_A Peroxisomal hydratase-dehydrogenase-epimerase; hot-DOG fold,
hydratase 2 motif, lyase; 1.95A {Candida tropicalis}
SCOP: d.38.1.4 d.38.1.4 PDB: 1pn4_A*
Length = 280
Score = 27.7 bits (61), Expect = 6.7
Identities = 8/55 (14%), Positives = 13/55 (23%)
Query: 262 GYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYPTHPYYGNAYPYPQHMN 316
Y + R P Q P + Y + P H++
Sbjct: 135 NCQADNKVYADRPAFATNQFLAPKRAPDYQVDVPVSEDLAALYRLSGDRNPLHID 189
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 7.2
Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 13/33 (39%)
Query: 185 QEELKKPGMGPEGYLNRLSASPVLTAPVSAQGP 217
++ LKK L AS L A SA P
Sbjct: 19 KQALKK-----------LQASLKLYADDSA--P 38
>2w5v_A Alkaline phosphatase; psychrophiles, cold adaptation, hydrolase;
HET: SEP; 1.78A {Antarctic bacterium TAB5} PDB: 2w5w_A*
2w5x_A* 2iuc_A 2iuc_B
Length = 375
Score = 27.7 bits (62), Expect = 7.5
Identities = 7/41 (17%), Positives = 12/41 (29%), Gaps = 10/41 (24%)
Query: 102 DGYSVKHVAYARYLRNHRLINEIF----------SDSVVPD 132
DG + ++ Y ++ F S V D
Sbjct: 43 DGAGLSQISSTFYFKSGTPNYTQFKNIGLIKTSSSREDVTD 83
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural
genomics O infectious diseases, 3-layer(ABA) sandwich,
rossmann fold; HET: NAD; 1.25A {Salmonella enterica
subsp}
Length = 294
Score = 27.5 bits (62), Expect = 7.6
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 268 GPYPP-PQQYPGASQPLAPRPPHGQYPY 294
G YP Q PG + P P G+ Y
Sbjct: 14 GEYPKQKQPAPGVQAKMTPVPDCGEKSY 41
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 27.1 bits (60), Expect = 8.2
Identities = 9/46 (19%), Positives = 12/46 (26%), Gaps = 2/46 (4%)
Query: 250 MLPPHPRPGSPSGYPGAGGPYPPPQQY--PGASQPLAPRPPHGQYP 293
M PP + P G Y P + + P P
Sbjct: 1 MQPPVANFCLWNLQPIQGSWMGAACIYQMPPSVRNTWWFPLLNTIP 46
>2h6f_B Protein farnesyltransferase beta subunit; ftase,
farnesyltransferase, farnesyl transferase,
prenyltransferase, CAAX, RAS, lipid modification,
prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP:
a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B*
1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B*
2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B*
1d8e_B* ...
Length = 437
Score = 27.5 bits (60), Expect = 9.6
Identities = 12/40 (30%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 264 PGAGGPYPPPQQYPGASQPLAP-RPPHGQYPYPYPQYPTH 302
P + Y PP P S+PL RP H + T
Sbjct: 4 PSSFTYYCPPSSSPVWSEPLYSLRPEHARERLQDDSVETV 43
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.134 0.416
Gapped
Lambda K H
0.267 0.0437 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,122,952
Number of extensions: 386902
Number of successful extensions: 1932
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1525
Number of HSP's successfully gapped: 256
Length of query: 379
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 284
Effective length of database: 4,049,298
Effective search space: 1150000632
Effective search space used: 1150000632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)