RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1953
(379 letters)
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 61
Score = 29.7 bits (67), Expect = 0.079
Identities = 7/55 (12%), Positives = 19/55 (34%), Gaps = 10/55 (18%)
Query: 121 INEIFSD--SVVPDVRSVV--------TTNRMQVLKRQVQSLTMHQKKLEAELQQ 165
IN+ + +V + + + ++ L++ L L+ Q+
Sbjct: 4 INDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLKLANQK 58
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 107
Score = 30.1 bits (68), Expect = 0.14
Identities = 10/72 (13%), Positives = 30/72 (41%), Gaps = 15/72 (20%)
Query: 118 HRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKF 177
++ I ++ + L+ ++++L + +K +E + +++ +K +
Sbjct: 51 YKSSGNILIRVAKDEL--------TEELQEKLETLQLREKTIERQEERVMKKLQ------ 96
Query: 178 VESSEQFQEELK 189
E QE +K
Sbjct: 97 -EMQVNIQEAMK 107
>d1ftpa_ b.60.1.2 (A:) Fatty acid-binding protein {Desert locust
(Schistocerca gregaria) [TaxId: 7010]}
Length = 133
Score = 29.8 bits (67), Expect = 0.23
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 168 EKFEAKKRKFVESSEQFQEELKKPGMGPEGYLNRLSASPVLT 209
++F K K +S F+E +K G+G L+ SPV+
Sbjct: 2 KEFAGIKYKL-DSQTNFEEYMKAIGVGAIERKAGLALSPVIE 42
>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 217
Score = 29.7 bits (66), Expect = 0.45
Identities = 20/161 (12%), Positives = 48/161 (29%), Gaps = 12/161 (7%)
Query: 34 ENNFSEYEKNLKAYH-NSPQYLAYMAAKAK-GKQAQQAAEEREAQAQGFSGKNADRRIDI 91
NNF+ + + Y+ + A K + E +
Sbjct: 18 LNNFNRQQASANRLQKEFNNYIRCVRAAQAASKTLMDSVCEIYEPQWSGYDALQAQTGAS 77
Query: 92 QPAEDEDEQEDGYSVKHVAYARYLRNHRLINEIFS--DSVVPDVRSVVTTNRMQVLKRQV 149
+ + + G V Y + + + + D + Q L+
Sbjct: 78 ESLWADFAHKLGDQVLIPL-NTYTGQFPEMKKKVEKRNRKLIDYDG--QRHSFQNLQAN- 133
Query: 150 QSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190
+++K + +L + E+ E +R + + + +EL
Sbjct: 134 ----ANKRKDDVKLTKGREQLEEARRTYEILNTELHDELPA 170
>d1xppa_ d.74.3.2 (A:) DNA-directed RNA polymerase subunit L, RpoL
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 99
Score = 28.2 bits (63), Expect = 0.54
Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 15/72 (20%)
Query: 107 KHVAYARYLRNHRLINEIFSDSVVPDVR-SVVTTNRMQVLKRQVQSLTMHQKKLEAELQQ 165
V ARY H +I+ + V + +KR V +KL +
Sbjct: 38 DQVDEARYYIKHPVIDNPQ-------IYVRVKSGKPQSAIKRAV-------RKLSKLYED 83
Query: 166 IEEKFEAKKRKF 177
+ +F+ + +++
Sbjct: 84 LGTQFQKEFQRY 95
>d1tfra1 a.60.7.1 (A:183-305) T4 RNase H {Bacteriophage T4 [TaxId:
10665]}
Length = 123
Score = 27.5 bits (61), Expect = 1.4
Identities = 16/85 (18%), Positives = 24/85 (28%), Gaps = 20/85 (23%)
Query: 89 IDIQPAEDEDEQEDGYSVKHVAYARYLRNHRLIN-----EIFSDSVVPDVRSVVTTNRMQ 143
Q E E Y RY N LI+ + + ++V S R +
Sbjct: 53 DREQAKVLLTESE---------YNRYKENLVLIDFDYIPDNIASNIVNYYNSYKLPPRGK 103
Query: 144 VLKRQVQSLTMHQKKLEAELQQIEE 168
+ V + L I E
Sbjct: 104 IYSYFV------KAGLSKLTNSINE 122
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 27.0 bits (60), Expect = 1.5
Identities = 7/45 (15%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Query: 141 RMQVLKRQVQSLTMHQKKLE-------AELQQIEEKFEAKKRKFV 178
R++ L + ++ L +++L+ +L+ + E ++++ +V
Sbjct: 2 RLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQRLAYV 46
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 133
Score = 26.8 bits (59), Expect = 2.5
Identities = 7/36 (19%), Positives = 14/36 (38%)
Query: 142 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKF 177
M+ +K Q L +K+ L+ I + +
Sbjct: 90 MESIKSQKNELESTLQKMGENLRAITDIMMKLSPQA 125
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 27.8 bits (61), Expect = 2.5
Identities = 22/164 (13%), Positives = 52/164 (31%), Gaps = 33/164 (20%)
Query: 36 NFSEYEKNLKAYHNSPQYLAYMAAKAKGKQAQQAAEEREAQAQGFSGKNADRRIDIQPAE 95
+ + + L+ Y KG QA++ + + + + E
Sbjct: 149 GYRLFVQKLQDLKKK-----YYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKE 203
Query: 96 DEDEQEDGYSVKHVAYARYLRNHRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMH 155
E E E + A A+ L + Q+++++ +S H
Sbjct: 204 KEIEVERVKAESAQASAKMLHEMQ-------------------RKNEQMMEQKERSYQEH 244
Query: 156 QKKLEAELQQIEEKFEAKKRKFVES---------SEQFQEELKK 190
K+L +++ + ++ + + E FQ+E +
Sbjct: 245 LKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRI 288
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 26.8 bits (58), Expect = 4.3
Identities = 6/35 (17%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 145 LKRQVQSLTMHQKKLEAELQQIEEKF---EAKKRK 176
L+++ + L ++ AEL+ +E+ ++++
Sbjct: 1 LRQRTEELLRCNEQQAAELETCKEQLFQSNMERKE 35
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 26.0 bits (57), Expect = 4.3
Identities = 10/50 (20%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 141 RMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190
++ Q + +++ EA L + E+ + K + E + +ELK+
Sbjct: 91 IKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEE--VRKNKELKE 138
Score = 25.6 bits (56), Expect = 7.3
Identities = 10/50 (20%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 141 RMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 190
+ ++ + M ++KL +++ +E EA + E+ QE+ K
Sbjct: 80 IQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAML---ERLQEKDKH 126
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
{Burkholderia glumae [TaxId: 337]}
Length = 280
Score = 26.5 bits (58), Expect = 4.7
Identities = 17/139 (12%), Positives = 37/139 (26%), Gaps = 12/139 (8%)
Query: 52 QYLAYMAAKAKGKQAQQAAEEREAQAQGFSGKNADRRIDIQPAEDEDEQEDGYSVKHVAY 111
+Y AY A A+ ++ A D+R + + E + +
Sbjct: 79 RYRAYFDALAQLPGDGAVLGDKLDPAAMQ--LALDQRAALADRTLGEWAEPFFGDEQ-RR 135
Query: 112 ARYLRNHRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFE 171
R+ I ++ + L LT ++ +A L ++
Sbjct: 136 QRHDLERIRIAN---------DTTLSPEQKAARLAALDAQLTPDERAQQAALHAQQDAVT 186
Query: 172 AKKRKFVESSEQFQEELKK 190
+ Q +
Sbjct: 187 KIADLQKAGATPDQMRAQI 205
>d1fjja_ b.17.1.2 (A:) Hypothetical protein YbhB {Escherichia coli
[TaxId: 562]}
Length = 159
Score = 26.1 bits (57), Expect = 4.8
Identities = 11/58 (18%), Positives = 12/58 (20%), Gaps = 1/58 (1%)
Query: 217 PPPGPSVPPMHGGQTGPVATVHHPPPSQGGHGAMLPPHPRPGSPS-GYPGAGGPYPPP 273
P H A P G +P G G G PP
Sbjct: 54 PDAPTGSGWWHWVVVNLPADTRVLPQGFGSGLVAMPDGVLQTRTDFGKTGYDGAAPPK 111
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 25.3 bits (55), Expect = 4.8
Identities = 4/30 (13%), Positives = 11/30 (36%)
Query: 138 TTNRMQVLKRQVQSLTMHQKKLEAELQQIE 167
+ ++ L+ Q L L + + +
Sbjct: 48 AIDYIRFLQHSNQKLKQENLSLRTAVHKSK 77
>d1g73a_ a.7.4.1 (A:) Smac/diablo {Human (Homo sapiens) [TaxId:
9606]}
Length = 157
Score = 26.0 bits (57), Expect = 5.9
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 135 SVVTTNRMQVLKRQVQSLTMHQKKLEAELQQ 165
S+ N +Q++K QV+ + +K E +L +
Sbjct: 125 SITARNHIQLVKLQVEEVHQLSRKAETKLAE 155
>d1clca1 a.102.1.2 (A:135-575) CelD cellulase, C-terminal domain
{Clostridium thermocellum [TaxId: 1515]}
Length = 441
Score = 26.5 bits (58), Expect = 6.5
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 8/39 (20%)
Query: 246 GHGAMLP--PHPRPGSPSGY----PGA--GGPYPPPQQY 276
G G P PH R G PG GG +P P+ +
Sbjct: 372 GLGINPPMNPHDRRSGADGIWEPWPGYLVGGGWPGPKDW 410
>d1g87a1 a.102.1.2 (A:3-456) Endo/exocellulase:cellobiose E-4,
N-terminal domain {Clostridium cellulolyticum, atcc
35319 [TaxId: 1521]}
Length = 454
Score = 26.1 bits (57), Expect = 8.6
Identities = 10/36 (27%), Positives = 11/36 (30%), Gaps = 2/36 (5%)
Query: 246 GHGAMLP--PHPRPGSPSGYPGAGGPYPPPQQYPGA 279
G+G P PH R S P GA
Sbjct: 361 GYGVNPPQHPHHRTAHGSWTDQMTSPTYHRHTIYGA 396
>d1tf4a1 a.102.1.2 (A:1-460) Endo/exocellulase:cellobiose E-4,
N-terminal domain {Thermomonospora fusca [TaxId: 2021]}
Length = 460
Score = 26.1 bits (57), Expect = 9.0
Identities = 10/36 (27%), Positives = 10/36 (27%), Gaps = 2/36 (5%)
Query: 246 GHGAMLP--PHPRPGSPSGYPGAGGPYPPPQQYPGA 279
G G P PH R S P GA
Sbjct: 366 GFGNNPPRNPHHRTAHGSWTDSIASPAENRHVLYGA 401
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia
virus type 2 [TaxId: 11909]}
Length = 137
Score = 25.2 bits (55), Expect = 9.5
Identities = 9/42 (21%), Positives = 9/42 (21%)
Query: 259 SPSGYPGAGGPYPPPQQYPGASQPLAPRPPHGQYPYPYPQYP 300
P A P P P H PY P
Sbjct: 93 VSPSAPAAPVPTPICPTTTPPPPPPPSPEAHVPPPYVEPTTT 134
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.134 0.416
Gapped
Lambda K H
0.267 0.0456 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,504,705
Number of extensions: 75569
Number of successful extensions: 279
Number of sequences better than 10.0: 1
Number of HSP's gapped: 275
Number of HSP's successfully gapped: 40
Length of query: 379
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 292
Effective length of database: 1,213,086
Effective search space: 354221112
Effective search space used: 354221112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.3 bits)