Query psy1955
Match_columns 512
No_of_seqs 346 out of 2762
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 20:33:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1955.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1955hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1979|consensus 100.0 1.1E-72 2.4E-77 580.8 21.7 341 4-358 5-397 (694)
2 COG0323 MutL DNA mismatch repa 100.0 3.2E-69 7E-74 590.7 27.9 293 3-306 1-336 (638)
3 PRK00095 mutL DNA mismatch rep 100.0 7E-59 1.5E-63 511.3 30.0 287 7-303 3-328 (617)
4 TIGR00585 mutl DNA mismatch re 100.0 1.3E-53 2.8E-58 435.2 26.1 265 7-281 3-312 (312)
5 KOG1978|consensus 100.0 4.3E-49 9.3E-54 416.6 19.3 272 7-303 1-320 (672)
6 KOG1979|consensus 100.0 1.9E-44 4.1E-49 372.2 13.1 213 289-510 29-242 (694)
7 COG0323 MutL DNA mismatch repa 100.0 3.8E-43 8.3E-48 385.2 17.8 206 289-503 25-231 (638)
8 KOG1978|consensus 100.0 2.1E-37 4.5E-42 328.0 13.9 205 288-501 21-229 (672)
9 KOG1977|consensus 100.0 2E-37 4.3E-42 324.3 11.7 270 6-302 1-310 (1142)
10 PRK00095 mutL DNA mismatch rep 100.0 9E-36 2E-40 328.3 19.6 205 288-504 23-227 (617)
11 TIGR00585 mutl DNA mismatch re 100.0 2.6E-34 5.6E-39 293.3 20.3 214 286-509 21-236 (312)
12 KOG1977|consensus 100.0 1.4E-28 3E-33 258.2 10.8 188 289-486 23-214 (1142)
13 cd03483 MutL_Trans_MLH1 MutL_T 99.9 6.9E-27 1.5E-31 207.5 12.9 114 188-301 2-127 (127)
14 PF01119 DNA_mis_repair: DNA m 99.9 2.9E-25 6.2E-30 195.1 13.0 109 191-301 4-119 (119)
15 cd03482 MutL_Trans_MutL MutL_T 99.9 5.2E-25 1.1E-29 194.4 12.8 106 194-301 11-123 (123)
16 cd03485 MutL_Trans_hPMS_1_like 99.9 5.3E-24 1.2E-28 190.4 13.4 113 188-300 2-131 (132)
17 cd03486 MutL_Trans_MLH3 MutL_T 99.9 1.8E-23 3.8E-28 189.1 12.6 104 194-300 12-140 (141)
18 cd00782 MutL_Trans MutL_Trans: 99.9 3.1E-23 6.6E-28 183.0 12.8 105 194-300 11-122 (122)
19 cd03484 MutL_Trans_hPMS_2_like 99.9 7.1E-23 1.5E-27 185.2 13.5 113 188-301 2-142 (142)
20 PRK14867 DNA topoisomerase VI 99.9 1.2E-20 2.6E-25 205.2 17.6 219 25-268 35-308 (659)
21 PRK14868 DNA topoisomerase VI 99.8 2.3E-19 4.9E-24 195.4 14.1 209 273-505 31-259 (795)
22 PRK14867 DNA topoisomerase VI 99.8 9.3E-18 2E-22 182.7 15.4 194 287-504 36-249 (659)
23 smart00433 TOP2c Topoisomerase 99.7 1.4E-16 3E-21 175.1 15.0 226 28-271 3-299 (594)
24 TIGR01055 parE_Gneg DNA topois 99.7 2.2E-16 4.8E-21 173.8 16.5 157 7-177 9-204 (625)
25 TIGR01052 top6b DNA topoisomer 99.7 2.4E-16 5.2E-21 167.2 14.6 169 281-469 21-207 (488)
26 PRK14868 DNA topoisomerase VI 99.7 1.7E-16 3.8E-21 173.1 9.3 182 25-224 45-272 (795)
27 TIGR01055 parE_Gneg DNA topois 99.6 8.2E-16 1.8E-20 169.4 12.9 156 290-467 33-205 (625)
28 PRK05644 gyrB DNA gyrase subun 99.6 8.3E-16 1.8E-20 169.9 12.4 159 286-467 36-210 (638)
29 TIGR01059 gyrB DNA gyrase, B s 99.6 1.3E-15 2.8E-20 169.4 12.6 156 286-467 29-203 (654)
30 TIGR01059 gyrB DNA gyrase, B s 99.6 4.6E-15 1E-19 165.0 16.3 153 7-177 6-202 (654)
31 PRK05644 gyrB DNA gyrase subun 99.6 6.5E-15 1.4E-19 162.8 17.1 153 7-177 13-209 (638)
32 smart00433 TOP2c Topoisomerase 99.6 3.7E-15 8E-20 164.0 10.5 180 291-490 5-198 (594)
33 cd00329 TopoII_MutL_Trans MutL 99.6 7.4E-15 1.6E-19 125.4 9.9 86 194-281 11-107 (107)
34 PRK05559 DNA topoisomerase IV 99.6 6.1E-14 1.3E-18 155.1 16.6 172 7-193 13-228 (631)
35 PRK14939 gyrB DNA gyrase subun 99.6 1.3E-14 2.8E-19 161.5 11.2 159 286-467 36-210 (756)
36 PRK05218 heat shock protein 90 99.6 1.1E-13 2.5E-18 152.6 18.4 265 13-299 14-344 (613)
37 PRK05559 DNA topoisomerase IV 99.5 3.7E-14 8.1E-19 156.8 14.0 182 286-490 36-232 (631)
38 PRK14939 gyrB DNA gyrase subun 99.5 1.1E-13 2.3E-18 154.2 14.5 157 7-178 12-210 (756)
39 PF13589 HATPase_c_3: Histidin 99.5 1.2E-14 2.6E-19 130.8 2.6 101 26-131 2-106 (137)
40 TIGR01052 top6b DNA topoisomer 99.5 1.4E-13 3.1E-18 146.2 10.5 101 24-130 26-140 (488)
41 PRK04184 DNA topoisomerase VI 99.5 1.1E-12 2.3E-17 141.0 17.1 175 277-469 25-216 (535)
42 PRK04184 DNA topoisomerase VI 99.3 1.1E-11 2.3E-16 133.3 11.5 101 25-131 35-151 (535)
43 PRK05218 heat shock protein 90 99.3 3.9E-11 8.4E-16 132.7 15.3 196 291-509 30-262 (613)
44 COG1389 DNA topoisomerase VI, 99.2 3.2E-11 6.9E-16 123.9 8.9 121 23-148 33-162 (538)
45 COG1389 DNA topoisomerase VI, 98.9 1.6E-08 3.4E-13 104.4 12.5 172 286-471 35-218 (538)
46 PRK14083 HSP90 family protein; 98.8 7.1E-09 1.5E-13 114.0 8.1 112 14-127 12-136 (601)
47 COG3290 CitA Signal transducti 98.8 1.3E-08 2.7E-13 108.0 8.0 95 12-117 413-518 (537)
48 COG4191 Signal transduction hi 98.6 3.7E-08 8.1E-13 105.1 5.7 60 25-84 496-560 (603)
49 PF02518 HATPase_c: Histidine 98.6 8.9E-08 1.9E-12 82.2 7.2 88 25-119 4-99 (111)
50 PTZ00130 heat shock protein 90 98.4 3.2E-07 7E-12 102.6 5.5 111 15-127 78-211 (814)
51 PTZ00272 heat shock protein 83 98.3 7.1E-07 1.5E-11 99.5 7.0 100 23-127 22-147 (701)
52 TIGR01058 parE_Gpos DNA topois 98.3 3.2E-05 7E-10 86.1 17.6 109 6-119 9-136 (637)
53 TIGR02938 nifL_nitrog nitrogen 98.3 2.5E-06 5.4E-11 91.2 8.6 84 27-119 388-483 (494)
54 COG0326 HtpG Molecular chapero 98.2 1.7E-06 3.8E-11 93.8 7.3 104 23-127 24-151 (623)
55 PRK15053 dpiB sensor histidine 98.2 3.3E-06 7.2E-11 92.6 9.1 85 25-118 431-527 (545)
56 PRK10364 sensor protein ZraS; 98.2 5.1E-06 1.1E-10 89.2 9.4 82 25-118 347-436 (457)
57 PF13589 HATPase_c_3: Histidin 98.2 2E-06 4.3E-11 77.4 4.9 101 289-400 4-106 (137)
58 PRK09303 adaptive-response sen 98.1 9.4E-06 2E-10 85.3 9.2 86 26-119 272-366 (380)
59 PRK10604 sensor protein RstB; 98.1 1E-05 2.2E-10 86.5 9.3 87 26-118 319-411 (433)
60 PRK11006 phoR phosphate regulo 98.1 1.1E-05 2.4E-10 86.0 8.9 88 26-119 317-412 (430)
61 TIGR01386 cztS_silS_copS heavy 98.1 2E-05 4.4E-10 83.7 10.6 85 26-116 353-445 (457)
62 PRK11086 sensory histidine kin 98.0 1.6E-05 3.6E-10 86.6 9.4 82 25-118 432-523 (542)
63 PRK10755 sensor protein BasS/P 98.0 3.3E-05 7.2E-10 79.9 10.2 83 27-119 248-338 (356)
64 PRK09470 cpxA two-component se 97.9 3.3E-05 7.1E-10 82.4 9.5 87 27-119 354-446 (461)
65 PRK10549 signal transduction h 97.9 3.3E-05 7.1E-10 82.7 9.5 88 26-119 352-447 (466)
66 COG2205 KdpD Osmosensitive K+ 97.9 3.3E-05 7.3E-10 85.6 9.1 56 27-82 776-834 (890)
67 COG0642 BaeS Signal transducti 97.9 2E-05 4.4E-10 78.4 6.8 61 25-85 227-289 (336)
68 PRK10815 sensor protein PhoQ; 97.9 3.9E-05 8.5E-10 83.4 9.3 83 27-119 379-467 (485)
69 cd00075 HATPase_c Histidine ki 97.9 7E-05 1.5E-09 61.2 8.6 84 27-118 1-93 (103)
70 PRK09467 envZ osmolarity senso 97.9 4.8E-05 1E-09 80.8 9.3 85 26-118 331-421 (435)
71 PRK11100 sensory histidine kin 97.9 6.5E-05 1.4E-09 80.2 10.0 92 26-127 368-467 (475)
72 TIGR02916 PEP_his_kin putative 97.8 3.8E-05 8.3E-10 86.9 8.3 82 26-119 579-669 (679)
73 PRK11091 aerobic respiration c 97.8 6.1E-05 1.3E-09 86.5 9.5 89 26-119 398-494 (779)
74 PRK15347 two component system 97.8 7.1E-05 1.5E-09 87.3 9.7 83 26-118 513-602 (921)
75 PRK13837 two-component VirA-li 97.7 9.7E-05 2.1E-09 85.6 9.3 81 26-118 560-663 (828)
76 PRK10618 phosphotransfer inter 97.7 9.4E-05 2E-09 85.8 9.2 87 26-119 565-661 (894)
77 TIGR03785 marine_sort_HK prote 97.7 0.00015 3.2E-09 82.5 10.1 88 26-119 597-692 (703)
78 TIGR01058 parE_Gpos DNA topois 97.7 0.00025 5.4E-09 79.1 11.6 163 286-467 33-208 (637)
79 PRK11073 glnL nitrogen regulat 97.7 8.3E-05 1.8E-09 76.5 7.1 81 26-118 237-336 (348)
80 TIGR01925 spIIAB anti-sigma F 97.7 0.00017 3.8E-09 64.3 8.3 83 24-118 37-126 (137)
81 COG0187 GyrB Type IIA topoisom 97.7 0.00027 6E-09 76.7 10.7 108 7-119 11-138 (635)
82 smart00387 HATPase_c Histidine 97.6 0.00022 4.8E-09 59.2 7.6 59 25-83 4-65 (111)
83 PRK10337 sensor protein QseC; 97.6 0.00016 3.6E-09 77.1 8.3 80 27-118 353-439 (449)
84 PRK10490 sensor protein KdpD; 97.6 0.00017 3.8E-09 84.0 8.8 85 26-118 778-870 (895)
85 TIGR02966 phoR_proteo phosphat 97.6 0.00025 5.5E-09 71.5 8.8 88 26-119 229-324 (333)
86 PRK11360 sensory histidine kin 97.5 0.00015 3.3E-09 79.3 7.3 81 26-118 500-589 (607)
87 COG3852 NtrB Signal transducti 97.5 0.00018 4E-09 71.7 6.6 83 25-119 240-344 (363)
88 TIGR02956 TMAO_torS TMAO reduc 97.5 0.00034 7.4E-09 82.1 10.0 87 25-119 578-672 (968)
89 PRK11466 hybrid sensory histid 97.5 0.00038 8.2E-09 81.3 9.8 84 26-119 561-651 (914)
90 PRK14083 HSP90 family protein; 97.5 0.0005 1.1E-08 76.1 10.0 157 290-455 26-187 (601)
91 PRK09835 sensor kinase CusS; P 97.5 0.00049 1.1E-08 73.9 9.8 86 26-117 375-468 (482)
92 PRK13557 histidine kinase; Pro 97.5 0.00027 5.8E-09 76.8 7.8 84 26-119 277-383 (540)
93 COG5000 NtrY Signal transducti 97.4 0.00018 3.9E-09 77.5 5.6 81 26-118 600-695 (712)
94 PRK10841 hybrid sensory kinase 97.4 0.00055 1.2E-08 80.2 9.8 87 26-118 562-655 (924)
95 COG5002 VicK Signal transducti 97.3 0.00042 9.2E-09 70.1 6.3 74 26-105 342-418 (459)
96 PRK11107 hybrid sensory histid 97.3 0.0009 2E-08 78.0 10.1 88 26-119 408-507 (919)
97 PRK04069 serine-protein kinase 97.3 0.00039 8.5E-09 64.2 5.4 86 23-116 39-131 (161)
98 PRK10547 chemotaxis protein Ch 97.2 0.00077 1.7E-08 75.6 8.1 84 28-118 387-511 (670)
99 PRK03660 anti-sigma F factor; 97.2 0.0014 3.1E-08 58.9 8.0 84 23-118 36-126 (146)
100 PRK09959 hybrid sensory histid 97.1 0.0012 2.7E-08 79.4 9.1 85 26-118 828-924 (1197)
101 TIGR01924 rsbW_low_gc serine-p 97.1 0.0013 2.7E-08 60.8 6.4 87 22-116 38-131 (159)
102 COG4192 Signal transduction hi 96.9 0.0013 2.9E-08 68.7 5.5 61 25-85 563-628 (673)
103 PTZ00272 heat shock protein 83 96.9 0.0033 7.1E-08 70.7 8.7 156 292-461 30-205 (701)
104 PTZ00130 heat shock protein 90 96.8 0.0048 1E-07 69.9 9.2 180 268-461 54-270 (814)
105 COG0643 CheA Chemotaxis protei 96.8 0.0027 5.8E-08 71.7 7.0 90 24-120 430-563 (716)
106 COG0326 HtpG Molecular chapero 96.5 0.013 2.8E-07 64.3 10.0 159 292-463 32-210 (623)
107 KOG0019|consensus 96.5 0.0051 1.1E-07 66.4 6.6 115 7-127 43-178 (656)
108 PRK11644 sensory histidine kin 96.5 0.0089 1.9E-07 65.3 8.5 44 27-70 411-456 (495)
109 PHA02569 39 DNA topoisomerase 96.4 0.0019 4.1E-08 71.7 3.1 88 24-118 43-150 (602)
110 PF13581 HATPase_c_2: Histidin 96.3 0.011 2.5E-07 51.5 6.5 79 23-114 28-113 (125)
111 COG0187 GyrB Type IIA topoisom 96.2 0.013 2.9E-07 63.9 8.1 156 290-468 43-212 (635)
112 PTZ00108 DNA topoisomerase 2-l 96.2 0.007 1.5E-07 72.3 6.3 101 23-127 54-172 (1388)
113 PTZ00109 DNA gyrase subunit b; 96.2 0.013 2.8E-07 66.8 7.9 141 316-467 153-358 (903)
114 PF02518 HATPase_c: Histidine 96.2 0.017 3.7E-07 49.1 6.9 84 284-381 2-86 (111)
115 COG3850 NarQ Signal transducti 96.2 0.0068 1.5E-07 64.8 5.2 45 26-70 481-527 (574)
116 PTZ00109 DNA gyrase subunit b; 96.1 0.0026 5.6E-08 72.4 2.0 101 18-120 116-272 (903)
117 PHA02569 39 DNA topoisomerase 96.1 0.03 6.5E-07 62.3 10.0 136 316-466 72-223 (602)
118 KOG0020|consensus 96.0 0.0094 2E-07 62.7 5.4 94 28-122 97-218 (785)
119 PLN03128 DNA topoisomerase 2; 96.0 0.0092 2E-07 70.4 5.9 91 23-117 49-154 (1135)
120 PRK10600 nitrate/nitrite senso 95.8 0.022 4.8E-07 63.1 7.8 45 27-71 470-516 (569)
121 PLN03237 DNA topoisomerase 2; 95.7 0.015 3.2E-07 69.5 5.9 90 24-117 75-179 (1465)
122 KOG0787|consensus 95.5 0.037 8E-07 56.9 6.9 74 25-98 259-346 (414)
123 COG4251 Bacteriophytochrome (l 95.4 0.04 8.7E-07 60.1 7.4 87 26-120 636-731 (750)
124 COG4585 Signal transduction hi 95.3 0.024 5.2E-07 59.2 5.5 48 25-72 278-327 (365)
125 PRK13560 hypothetical protein; 95.1 0.026 5.7E-07 64.5 5.3 44 27-70 712-762 (807)
126 COG2172 RsbW Anti-sigma regula 95.1 0.12 2.7E-06 46.9 8.6 94 22-127 36-137 (146)
127 PTZ00108 DNA topoisomerase 2-l 95.0 0.2 4.4E-06 60.3 12.3 141 316-466 85-241 (1388)
128 COG2972 Predicted signal trans 94.8 0.047 1E-06 59.0 6.1 53 24-76 348-407 (456)
129 PLN03237 DNA topoisomerase 2; 94.2 0.4 8.6E-06 57.9 12.1 141 316-466 102-259 (1465)
130 COG3920 Signal transduction hi 93.7 0.096 2.1E-06 51.0 4.9 47 25-71 121-175 (221)
131 PLN03128 DNA topoisomerase 2; 93.6 0.61 1.3E-05 55.5 12.1 166 287-466 52-234 (1135)
132 PRK10935 nitrate/nitrite senso 93.0 0.14 3.1E-06 56.2 5.6 44 27-70 472-518 (565)
133 COG3851 UhpB Signal transducti 92.5 0.18 3.8E-06 51.8 4.9 71 25-116 409-482 (497)
134 COG4191 Signal transduction hi 92.5 0.34 7.4E-06 52.9 7.3 102 238-354 458-560 (603)
135 PRK13559 hypothetical protein; 92.3 0.18 3.9E-06 52.0 4.9 45 26-70 267-319 (361)
136 PRK10364 sensor protein ZraS; 92.1 0.43 9.3E-06 51.1 7.7 64 283-353 344-408 (457)
137 COG3290 CitA Signal transducti 91.6 0.45 9.8E-06 51.5 6.9 80 285-379 425-505 (537)
138 TIGR02938 nifL_nitrog nitrogen 91.3 0.5 1.1E-05 50.3 7.2 86 267-355 366-453 (494)
139 PRK11006 phoR phosphate regulo 91.2 0.66 1.4E-05 49.3 7.9 65 282-353 312-377 (430)
140 PRK10549 signal transduction h 90.7 1.3 2.8E-05 47.2 9.7 86 283-381 348-434 (466)
141 PRK09303 adaptive-response sen 90.4 0.86 1.9E-05 47.8 7.8 64 283-353 268-333 (380)
142 PRK15347 two component system 90.3 1.6 3.4E-05 51.2 10.6 101 270-388 496-602 (921)
143 PRK11100 sensory histidine kin 90.1 1.9 4.1E-05 45.8 10.2 65 283-354 364-429 (475)
144 PRK10755 sensor protein BasS/P 89.1 3.2 6.9E-05 42.7 10.7 62 283-351 243-305 (356)
145 PRK10604 sensor protein RstB; 89.1 2.3 5E-05 45.4 9.9 61 283-352 315-376 (433)
146 TIGR01386 cztS_silS_copS heavy 88.9 1.4 3E-05 46.7 8.1 84 284-380 350-434 (457)
147 PRK11360 sensory histidine kin 88.8 1.7 3.6E-05 47.5 8.8 66 283-353 496-561 (607)
148 COG3275 LytS Putative regulato 88.8 0.5 1.1E-05 50.3 4.4 45 26-70 456-507 (557)
149 TIGR02916 PEP_his_kin putative 88.7 1.1 2.5E-05 50.8 7.6 64 283-353 575-640 (679)
150 PRK10815 sensor protein PhoQ; 87.9 1.4 3.1E-05 47.9 7.5 60 283-351 374-434 (485)
151 TIGR02956 TMAO_torS TMAO reduc 87.8 3.4 7.4E-05 48.6 11.1 104 271-388 563-671 (968)
152 PRK09470 cpxA two-component se 87.4 1.8 3.9E-05 46.0 7.7 61 283-352 349-410 (461)
153 PRK11091 aerobic respiration c 87.1 2.4 5.3E-05 48.8 9.2 96 282-388 393-493 (779)
154 PRK10618 phosphotransfer inter 86.9 1.9 4.2E-05 50.6 8.2 78 271-354 549-628 (894)
155 KOG0019|consensus 86.8 1.2 2.5E-05 48.9 5.7 126 316-455 93-227 (656)
156 PRK10337 sensor protein QseC; 86.8 1.7 3.7E-05 46.2 7.2 61 282-352 347-407 (449)
157 COG0642 BaeS Signal transducti 86.7 2.7 6E-05 41.3 8.2 63 285-355 226-289 (336)
158 PRK10490 sensor protein KdpD; 86.5 1.9 4.1E-05 50.8 7.8 64 283-353 774-838 (895)
159 COG4564 Signal transduction hi 86.4 0.81 1.8E-05 46.6 4.1 81 25-123 358-441 (459)
160 TIGR03785 marine_sort_HK prote 86.3 1.9 4E-05 49.4 7.5 64 283-353 593-657 (703)
161 PRK15053 dpiB sensor histidine 86.3 1.7 3.6E-05 47.7 6.9 85 284-380 429-514 (545)
162 COG3852 NtrB Signal transducti 85.9 1.8 3.9E-05 43.9 6.2 79 275-354 230-316 (363)
163 PRK11073 glnL nitrogen regulat 85.2 2.8 6.1E-05 42.8 7.6 75 272-353 223-308 (348)
164 PRK13837 two-component VirA-li 84.9 2.7 5.9E-05 48.9 8.1 66 283-353 556-635 (828)
165 TIGR02966 phoR_proteo phosphat 84.7 3.4 7.3E-05 41.3 7.8 64 283-352 225-288 (333)
166 PF14501 HATPase_c_5: GHKL dom 83.4 3.7 8.1E-05 34.2 6.3 68 25-110 4-77 (100)
167 PRK10841 hybrid sensory kinase 82.8 18 0.00038 42.9 13.7 76 270-352 545-620 (924)
168 COG3850 NarQ Signal transducti 82.8 2.2 4.7E-05 46.3 5.6 83 238-340 444-527 (574)
169 PRK11466 hybrid sensory histid 82.7 3.8 8.2E-05 48.0 8.2 73 272-352 546-619 (914)
170 PRK09835 sensor kinase CusS; P 82.4 4.2 9.1E-05 43.5 7.8 64 283-353 371-435 (482)
171 PRK09467 envZ osmolarity senso 82.2 4.3 9.3E-05 42.9 7.7 60 283-351 327-387 (435)
172 PRK11107 hybrid sensory histid 81.6 9.5 0.00021 44.6 11.0 76 270-351 391-470 (919)
173 COG2205 KdpD Osmosensitive K+ 81.1 7.6 0.00017 44.4 9.2 96 238-352 738-834 (890)
174 PRK11086 sensory histidine kin 81.1 3.8 8.2E-05 44.5 7.0 62 287-353 433-495 (542)
175 KOG0355|consensus 76.5 6.4 0.00014 44.8 6.9 49 22-71 49-101 (842)
176 COG5002 VicK Signal transducti 76.0 8.4 0.00018 39.9 7.0 76 287-375 342-418 (459)
177 PRK13557 histidine kinase; Pro 75.5 10 0.00022 41.0 8.2 63 284-353 274-352 (540)
178 PRK11644 sensory histidine kin 73.1 8.8 0.00019 41.9 7.0 49 285-341 408-457 (495)
179 COG4585 Signal transduction hi 71.6 9.1 0.0002 39.8 6.4 52 284-343 276-328 (365)
180 cd00075 HATPase_c Histidine ki 69.7 28 0.0006 27.3 7.7 79 290-381 3-81 (103)
181 PRK13560 hypothetical protein; 65.2 17 0.00037 41.5 7.4 72 265-340 689-762 (807)
182 COG5000 NtrY Signal transducti 64.7 20 0.00043 39.9 7.2 73 283-355 596-669 (712)
183 PRK09959 hybrid sensory histid 64.2 20 0.00043 43.5 8.1 66 283-354 824-893 (1197)
184 KOG0020|consensus 61.1 41 0.00088 36.4 8.5 116 327-455 143-273 (785)
185 PRK10600 nitrate/nitrite senso 60.0 22 0.00047 39.4 6.9 49 285-341 467-516 (569)
186 smart00387 HATPase_c Histidine 53.0 1.1E+02 0.0024 24.1 10.0 63 285-353 3-65 (111)
187 PRK04069 serine-protein kinase 49.3 68 0.0015 29.2 7.2 60 286-348 41-100 (161)
188 COG3851 UhpB Signal transducti 47.2 77 0.0017 33.2 7.7 86 238-341 372-457 (497)
189 COG4192 Signal transduction hi 44.1 59 0.0013 35.1 6.5 67 283-355 560-628 (673)
190 PRK10935 nitrate/nitrite senso 42.5 72 0.0016 34.9 7.4 48 287-340 471-518 (565)
191 KOG1845|consensus 41.8 31 0.00068 39.5 4.4 86 27-117 147-245 (775)
192 COG4251 Bacteriophytochrome (l 36.3 1E+02 0.0022 34.6 7.0 72 269-348 620-692 (750)
193 cd02414 jag_KH jag_K homology 34.1 1.5E+02 0.0033 23.4 6.2 44 260-303 17-60 (77)
194 COG5381 Uncharacterized protei 30.6 1.4E+02 0.003 27.2 5.7 55 22-76 59-115 (184)
195 TIGR01925 spIIAB anti-sigma F 29.8 1.4E+02 0.0031 25.8 5.9 60 287-352 39-99 (137)
196 TIGR01924 rsbW_low_gc serine-p 26.6 1.5E+02 0.0032 27.0 5.6 56 288-346 43-98 (159)
197 COG1929 Glycerate kinase [Carb 25.0 42 0.00091 35.0 1.7 62 31-110 114-175 (378)
198 PF02184 HAT: HAT (Half-A-TPR) 24.3 64 0.0014 21.5 1.9 21 440-460 1-21 (32)
199 COG3275 LytS Putative regulato 23.4 79 0.0017 34.3 3.4 15 326-340 493-507 (557)
200 COG2972 Predicted signal trans 23.3 2.7E+02 0.0059 30.0 7.7 31 316-346 376-407 (456)
201 PRK10547 chemotaxis protein Ch 21.3 2.3E+02 0.0049 32.5 6.8 17 327-343 431-447 (670)
202 PF13581 HATPase_c_2: Histidin 20.8 2.2E+02 0.0049 24.0 5.3 56 287-345 31-86 (125)
203 PF08781 DP: Transcription fac 20.5 1.1E+02 0.0024 27.6 3.3 30 255-285 57-86 (142)
204 KOG0787|consensus 20.5 3E+02 0.0065 29.1 6.8 123 234-368 212-346 (414)
No 1
>KOG1979|consensus
Probab=100.00 E-value=1.1e-72 Score=580.84 Aligned_cols=341 Identities=49% Similarity=0.712 Sum_probs=313.0
Q ss_pred CccccccChHHHHHHhcCCcccCHHHHHHHHHHccccCCCCeEEEEEEeCCeeeEEEEeCCCCCCHHhHHHHHhhcccCC
Q psy1955 4 PPKIKKLDETVVNRIAAGEVIQRPANALKELLENSLDAKSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSK 83 (512)
Q Consensus 4 ~~~i~~l~~~~~~~i~s~~~i~~~~~~v~eLv~Ns~dA~a~~i~i~~~~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK 83 (512)
++.|++||++++++|+|||+|++|..|+|||||||+||++|.|.|.+..||...++|.|||.||.++||+.+|+||.|||
T Consensus 5 ~~~IrrLde~VVNRIAAGEVI~RP~NAlKEliENSLDA~ST~I~V~vk~GGLKLlQisDnG~GI~reDl~ilCeRftTSK 84 (694)
T KOG1979|consen 5 PRKIRRLDEDVVNRIAAGEVIQRPVNALKELIENSLDANSTSIDVLVKDGGLKLLQISDNGSGIRREDLPILCERFTTSK 84 (694)
T ss_pred chhhhcCcHHHHhHhhccchhhchHHHHHHHHhccccCCCceEEEEEecCCeEEEEEecCCCccchhhhHHHHHHhhhhh
Confidence 34599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccccccCCcchhhhhhhccceEEEEEecCCCCceEEEEeee---------------------hhhhhhhhccc
Q psy1955 84 LTQFEDLNSISTFGFRGEALASISHVAHLTIITKTKTSPCAYRWCTYL---------------------ADLMALALMEM 142 (512)
Q Consensus 84 ~~~~~d~~~~~~~G~rGeaL~si~~~s~l~i~S~~~~~~~~~~~~~~~---------------------~dl~~~~F~n~ 142 (512)
+..|+||.++.||||||||||||++|++|+|+||++++.+||++ .|. +|| |||+
T Consensus 85 L~kFEDL~~lsTyGFRGEALASiShVA~VtV~TK~~~~~cayra-sY~DGkm~~~pKpcAgk~GT~I~vedL----FYN~ 159 (694)
T KOG1979|consen 85 LTKFEDLFSLSTYGFRGEALASISHVAHVTVTTKTAEGKCAYRA-SYRDGKMIATPKPCAGKQGTIITVEDL----FYNM 159 (694)
T ss_pred cchhHHHHhhhhcCccHHHHhhhhheeEEEEEEeecCceeeeEE-EeeccccccCCCCccCCCceEEEehHh----hccC
Confidence 99999999999999999999999999999999999999999999 777 889 9999
Q ss_pred chhhhHhhhcCCcHHHHHhhhhhc------ccCeE--EEecCCc-ceeecC-ccChHHHHH----HHHhhcce-Eee-ec
Q psy1955 143 SQYLQRDKEQIGDKEEKQWYRTVE------HTLVP--LMKSQYQ-PSEKIV-ERACLLEIA----SLNNLELL-SVE-GT 206 (512)
Q Consensus 143 Pv~~~Rrk~lks~~~E~~ki~~lv------~p~Vs--~~~~~~~-~~~~t~-~~s~~~~i~----~~~~~~l~-~i~-~~ 206 (512)
|+ ||+.|+++.+|+++|.++| +|+|+ +++.|++ ..+++. ..+..|+|+ ..++.+|+ ++. .+
T Consensus 160 ~~---Rrkal~~~~EE~~ki~dlv~ryAIHn~~VsFs~rk~Gd~~~dl~t~~~~s~~D~ir~i~g~~Va~~ll~els~~~ 236 (694)
T KOG1979|consen 160 PT---RRKALRNHAEEYRKIMDLVGRYAIHNPRVSFSLRKQGDTVADLRTSVSCSREDNIRNIYGVSVAKNLLNELSKCD 236 (694)
T ss_pred HH---HHHHhcCcHHHHHHHHHHHHHHheeCCCcceEEeeccccccccccCCccccccchhhhhhhHHHHHHHHHhhhcc
Confidence 99 9999999999999999999 89995 5566665 677887 788888888 67788888 776 56
Q ss_pred CCcccEEEEEEEecCcccCCCceEEEEEeCc------hHHHHHHHHhhcCCCCCCeEEEEEeeCCCceEEEeecCCCcce
Q psy1955 207 DDAFQLKVTGWITNVNFSTKKMTFLLFINNP------IKRMIEQVYSIYLPKGSFPFVYLSLCMDPKNVDVNVHPTKHEV 280 (512)
Q Consensus 207 ~~~~~~~v~G~is~p~~~~~r~~q~lfVNgR------i~k~I~~~Y~~~l~~~~~P~~~L~i~ipp~~iDVNvhP~K~eV 280 (512)
+..+.|+++||||++++..++....+||||| |+++|..+|..+||++..||+||+|++||+.+||||||+|+||
T Consensus 237 ~~~l~f~~~g~Isn~n~~akk~i~vlFIN~RLVes~~Lr~ale~VYa~yLpk~~~pFvYLsL~i~p~~vDVNVHPTK~eV 316 (694)
T KOG1979|consen 237 SKLLKFSAEGYISNANYSAKKSILVLFINGRLVESDELRHALEEVYAAYLPKGHHPFVYLSLNIDPENVDVNVHPTKREV 316 (694)
T ss_pred CceeEEeccceEechhhhhhhheEEEEEcCcEeehHHHHHHHHHHHHHhcCCCCCceEEEEEecCHHHcccccCCCccee
Confidence 6667889999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred eecchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCce---------eeEeecCCCCCCCcchhhhhhhcccc
Q psy1955 281 HFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGGL---------KLLQIQDNGTGIRKEDMDIVCERFTT 351 (512)
Q Consensus 281 ~f~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~~---------~~i~v~Dng~gi~~~~l~~~~~~~~T 351 (512)
+|+++++|++.|++.++..|.+.+++|.|+.|..+ |...++ ..-+..++...++++.|+|++.+ .
T Consensus 317 ~FL~qEeIie~I~~~ie~~L~~~d~er~~~~q~~i----P~~~~~~~er~~~~~~~~~s~~ks~k~~~~~mVRtDss--e 390 (694)
T KOG1979|consen 317 HFLNQEEIIERICQQIEERLSALDTERTFLKQVMI----PGPSTLKSERNKPSLKQSPSAQKSDKRYENKMVRTDSS--E 390 (694)
T ss_pred EeecHHHHHHHHHHHHHHHHhccCcccchhhhhcc----cCCccccccccCccccccccccccchhcccceeecccc--c
Confidence 99999999999999999999999999999988766 443322 12334456678999999999999 7
Q ss_pred CCccccc
Q psy1955 352 SKLTQFE 358 (512)
Q Consensus 352 SKi~~~~ 358 (512)
.||++|.
T Consensus 391 ~ki~~fl 397 (694)
T KOG1979|consen 391 RKIDSFL 397 (694)
T ss_pred cchhhhh
Confidence 8999997
No 2
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.2e-69 Score=590.71 Aligned_cols=293 Identities=36% Similarity=0.538 Sum_probs=267.6
Q ss_pred CCccccccChHHHHHHhcCCcccCHHHHHHHHHHccccCCCCeEEEEEEeCCeeeEEEEeCCCCCCHHhHHHHHhhcccC
Q psy1955 3 QPPKIKKLDETVVNRIAAGEVIQRPANALKELLENSLDAKSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTS 82 (512)
Q Consensus 3 ~~~~i~~l~~~~~~~i~s~~~i~~~~~~v~eLv~Ns~dA~a~~i~i~~~~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~ts 82 (512)
|+. |+.||++++++|+|||||++|++|||||||||||||||.|+|.++.+|...|+|.|||+||+++|++.++.||+||
T Consensus 1 M~~-Ir~L~~~l~nqIAAGEVIerPaSVVKELVENSlDAGAt~I~I~ve~gG~~~I~V~DNG~Gi~~~Dl~la~~rHaTS 79 (638)
T COG0323 1 MPK-IRQLPPDLVNQIAAGEVIERPASVVKELVENSLDAGATRIDIEVEGGGLKLIRVRDNGSGIDKEDLPLALLRHATS 79 (638)
T ss_pred CCc-ceeCCHHHHHHhcccceeecHHHHHHHHHhcccccCCCEEEEEEccCCccEEEEEECCCCCCHHHHHHHHhhhccc
Confidence 444 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccccCCcchhhhhhhccceEEEEEecCCCCceEEEEeee---------------------hhhhhhhhcc
Q psy1955 83 KLTQFEDLNSISTFGFRGEALASISHVAHLTIITKTKTSPCAYRWCTYL---------------------ADLMALALME 141 (512)
Q Consensus 83 K~~~~~d~~~~~~~G~rGeaL~si~~~s~l~i~S~~~~~~~~~~~~~~~---------------------~dl~~~~F~n 141 (512)
||.+++||..+.|||||||||+|||+||+|+|+||+++...||++ .+. +|| |||
T Consensus 80 KI~~~~DL~~I~TlGFRGEAL~SIasVsrlti~Srt~~~~~~~~~-~~~g~~~~~~~~p~a~~~GTtVeV~dL----F~N 154 (638)
T COG0323 80 KIASLEDLFRIRTLGFRGEALASIASVSRLTITSRTAEASEGTQI-YAEGGGMEVTVKPAAHPVGTTVEVRDL----FYN 154 (638)
T ss_pred cCCchhHHHHhhccCccHHHHHHHHhhheeEEEeecCCcCceEEE-EecCCcccccccCCCCCCCCEEEehHh----hcc
Confidence 999999999999999999999999999999999999998999987 333 888 999
Q ss_pred cchhhhHhhhcCCcHHHHHhhhhhc------ccCeEEEe--cCCc--ceeecC-ccChHHHHH----HHHhhcceEeeec
Q psy1955 142 MSQYLQRDKEQIGDKEEKQWYRTVE------HTLVPLMK--SQYQ--PSEKIV-ERACLLEIA----SLNNLELLSVEGT 206 (512)
Q Consensus 142 ~Pv~~~Rrk~lks~~~E~~ki~~lv------~p~Vs~~~--~~~~--~~~~t~-~~s~~~~i~----~~~~~~l~~i~~~ 206 (512)
+|+ |||+||+.++|+.+|.++| ||+|+|.+ +|+. ...+++ .+...++++ ..+.+++++++..
T Consensus 155 tPa---RrKflks~~~E~~~i~~vv~r~ALahp~I~F~l~~~gk~~~~~~~~~~~~~~~~ri~~i~G~~~~~~~l~i~~~ 231 (638)
T COG0323 155 TPA---RRKFLKSEKTEFGHITELINRYALAHPDISFSLSHNGKLRIELLKLPGTGDLEERIAAVYGTEFLKNALPIENE 231 (638)
T ss_pred ChH---HHHhhcccHHHHHHHHHHHHHHHhcCCCeEEEEEECCceeeEEEecCCCCcHHHHHHHHhCHHHHHhhcccccC
Confidence 999 9999999999999999999 99996654 5552 344444 455555555 7888999999887
Q ss_pred CCcccEEEEEEEecCccc-CCCceEEEEEeCc------hHHHHHHHHhhcCCCCCCeEEEEEeeCCCceEEEeecCCCcc
Q psy1955 207 DDAFQLKVTGWITNVNFS-TKKMTFLLFINNP------IKRMIEQVYSIYLPKGSFPFVYLSLCMDPKNVDVNVHPTKHE 279 (512)
Q Consensus 207 ~~~~~~~v~G~is~p~~~-~~r~~q~lfVNgR------i~k~I~~~Y~~~l~~~~~P~~~L~i~ipp~~iDVNvhP~K~e 279 (512)
.+ ++++.||++.|.++ .++..||+||||| |.++|.++|+.++|.++||+|||+|+|||..|||||||+|+|
T Consensus 232 ~~--~~~l~G~v~~P~~~r~~~~~q~~fVNgR~V~~~~l~~Ai~~aY~~~L~~~r~P~~vL~l~l~p~~vDVNVHP~K~E 309 (638)
T COG0323 232 HE--DLRLSGYVSLPEFTRASRDYQYLFVNGRPVRDKLLNHALREAYADYLPRGRYPVFVLFLELDPELVDVNVHPAKKE 309 (638)
T ss_pred CC--ceEEEEEecccccccCCccceEEEECCCEeccHHHHHHHHHHHHhhccCCCCcEEEEEEeeChhhcccccCCCcce
Confidence 65 78999999999766 4778999999999 999999999999999999999999999999999999999999
Q ss_pred eeecchhhHHHHHHHHHHHHhcCCCCc
Q psy1955 280 VHFLHEDTIIERVQSMLEKTLLGSNTS 306 (512)
Q Consensus 280 V~f~~~~~I~~~I~~~l~~~l~~~~~~ 306 (512)
|+|.++..|.+.|+++|.++|......
T Consensus 310 Vrf~~~~~i~~~I~~~I~~~L~~~~~~ 336 (638)
T COG0323 310 VRFSDERLVHDLIYEAIKEALAQQGLI 336 (638)
T ss_pred EEecCHHHHHHHHHHHHHHHHHhcccC
Confidence 999999999999999999999876433
No 3
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=100.00 E-value=7e-59 Score=511.28 Aligned_cols=287 Identities=35% Similarity=0.567 Sum_probs=264.4
Q ss_pred ccccChHHHHHHhcCCcccCHHHHHHHHHHccccCCCCeEEEEEEeCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCC
Q psy1955 7 IKKLDETVVNRIAAGEVIQRPANALKELLENSLDAKSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQ 86 (512)
Q Consensus 7 i~~l~~~~~~~i~s~~~i~~~~~~v~eLv~Ns~dA~a~~i~i~~~~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~ 86 (512)
|++||++++++|+||+||++|.++|+||||||+||||+.|.|.+..+|...|+|.|||+||++++++.++.+|+|||+.+
T Consensus 3 I~~L~~~v~~~IaAgevI~~~~svvkElveNsiDAgat~I~v~i~~~g~~~i~V~DnG~Gi~~~~~~~~~~~~~tsKi~~ 82 (617)
T PRK00095 3 IQLLPPQLANQIAAGEVVERPASVVKELVENALDAGATRIDIEIEEGGLKLIRVRDNGCGISKEDLALALARHATSKIAS 82 (617)
T ss_pred ceECCHHHHHHhcCcCcccCHHHHHHHHHHHHHhCCCCEEEEEEEeCCeEEEEEEEcCCCCCHHHHHHHhhccCCCCCCC
Confidence 99999999999999999999999999999999999999999999888888899999999999999999999999999999
Q ss_pred ccccccccccCCcchhhhhhhccceEEEEEecCCCCceEEEEeee--------------------hhhhhhhhcccchhh
Q psy1955 87 FEDLNSISTFGFRGEALASISHVAHLTIITKTKTSPCAYRWCTYL--------------------ADLMALALMEMSQYL 146 (512)
Q Consensus 87 ~~d~~~~~~~G~rGeaL~si~~~s~l~i~S~~~~~~~~~~~~~~~--------------------~dl~~~~F~n~Pv~~ 146 (512)
++|+.++.++|||||||+||+++|+|+|.||+.++..||++ .|. +|| |+|+|+
T Consensus 83 ~~dl~~~~t~GfrGeAL~sI~~vs~l~i~s~~~~~~~~~~~-~~~~G~~~~~~~~~~~~GT~V~v~~L----F~n~P~-- 155 (617)
T PRK00095 83 LDDLEAIRTLGFRGEALPSIASVSRLTLTSRTADAAEGWQI-VYEGGEIVEVKPAAHPVGTTIEVRDL----FFNTPA-- 155 (617)
T ss_pred hhHhhccccCCcchhHHHhhhhceEEEEEEecCCCCceEEE-EecCCcCcceecccCCCCCEEEechh----hccCcH--
Confidence 99999999999999999999999999999999988889987 555 788 999999
Q ss_pred hHhhhcCCcHHHHHhhhhhc------ccCeEEEecCC-cceeecC-ccChHHHHH----HHHhhcceEeeecCCcccEEE
Q psy1955 147 QRDKEQIGDKEEKQWYRTVE------HTLVPLMKSQY-QPSEKIV-ERACLLEIA----SLNNLELLSVEGTDDAFQLKV 214 (512)
Q Consensus 147 ~Rrk~lks~~~E~~ki~~lv------~p~Vs~~~~~~-~~~~~t~-~~s~~~~i~----~~~~~~l~~i~~~~~~~~~~v 214 (512)
|||++++.+.|+.+|.+++ ||+|+|....+ ...+.+. .+++.+++. ..+..++++++.+.+ .+++
T Consensus 156 -Rrkflk~~~~e~~~i~~~v~~~Al~~p~i~f~l~~~~~~~~~~~~~~~~~~~i~~i~g~~~~~~l~~~~~~~~--~~~i 232 (617)
T PRK00095 156 -RRKFLKSEKTELGHIDDVVNRLALAHPDVAFTLTHNGKLVLQTRGAGQLLQRLAAILGREFAENALPIDAEHG--DLRL 232 (617)
T ss_pred -HHHhccCcHHHHHHHHHHHHHHhhcCCCcEEEEEECCEEEEEeCCCCCHHHHHHHHhCHHhHhheEEEeccCC--CEEE
Confidence 9999999999999999998 99997766433 3566666 678888887 456678888887655 6999
Q ss_pred EEEEecCccc-CCCceEEEEEeCc------hHHHHHHHHhhcCCCCCCeEEEEEeeCCCceEEEeecCCCcceeecchhh
Q psy1955 215 TGWITNVNFS-TKKMTFLLFINNP------IKRMIEQVYSIYLPKGSFPFVYLSLCMDPKNVDVNVHPTKHEVHFLHEDT 287 (512)
Q Consensus 215 ~G~is~p~~~-~~r~~q~lfVNgR------i~k~I~~~Y~~~l~~~~~P~~~L~i~ipp~~iDVNvhP~K~eV~f~~~~~ 287 (512)
+||++.|.++ .++..||+||||| |.++|+++|+.++++++||+++|+|+|||..|||||||+|++|+|.+|..
T Consensus 233 ~g~is~p~~~~~~~~~~~~fvN~R~v~~~~l~~ai~~~y~~~~~~~~~P~~~l~i~~~~~~~DvNvhP~K~ev~f~~e~~ 312 (617)
T PRK00095 233 SGYVGLPTLSRANRDYQYLFVNGRYVRDKLLNHAIRQAYHDLLPRGRYPAFVLFLELDPHQVDVNVHPAKHEVRFRDERL 312 (617)
T ss_pred EEEEeCcccccCCCcceEEEECCcEecCHHHHHHHHHHHHHhccCCCCcEEEEEEEeChHhcccccCCCcCEEEeCCHHH
Confidence 9999999765 4578899999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCC
Q psy1955 288 IIERVQSMLEKTLLGS 303 (512)
Q Consensus 288 I~~~I~~~l~~~l~~~ 303 (512)
|...|++.|.++|...
T Consensus 313 i~~~i~~~i~~~l~~~ 328 (617)
T PRK00095 313 VHDLIVQAIQEALAQS 328 (617)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999999764
No 4
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.3e-53 Score=435.24 Aligned_cols=265 Identities=43% Similarity=0.630 Sum_probs=235.3
Q ss_pred ccccChHHHHHHhcCCcccCHHHHHHHHHHccccCCCCeEEEEEEeCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCC
Q psy1955 7 IKKLDETVVNRIAAGEVIQRPANALKELLENSLDAKSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQ 86 (512)
Q Consensus 7 i~~l~~~~~~~i~s~~~i~~~~~~v~eLv~Ns~dA~a~~i~i~~~~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~ 86 (512)
|++||++++++|+||++|.+|.+|++|||+||+||+|+.|.|.+..++...|+|.|||.||++++++.+|++|+|||+..
T Consensus 3 I~~l~~~~~~~i~s~~~i~~~~~~l~eLi~Na~dA~a~~I~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsk~~~ 82 (312)
T TIGR00585 3 IKPLPPELVNKIAAGEVIERPASVVKELVENSLDAGATRIDVEIEEGGLKLIEVSDNGSGIDKEDLPLACERHATSKIQS 82 (312)
T ss_pred CeECCHHHHHHHhCcCchhhHHHHHHHHHHHHHHCCCCEEEEEEEeCCEEEEEEEecCCCCCHHHHHHHhhCCCcCCCCC
Confidence 99999999999999999999999999999999999999999999887777799999999999999999999999999999
Q ss_pred ccccccccccCCcchhhhhhhccceEEEEEec-CCCCceEEEEeee--------------------hhhhhhhhcccchh
Q psy1955 87 FEDLNSISTFGFRGEALASISHVAHLTIITKT-KTSPCAYRWCTYL--------------------ADLMALALMEMSQY 145 (512)
Q Consensus 87 ~~d~~~~~~~G~rGeaL~si~~~s~l~i~S~~-~~~~~~~~~~~~~--------------------~dl~~~~F~n~Pv~ 145 (512)
++|+....++|||||||+||+++|+++|.||+ +++..+|++ ... +|| |+|+|+
T Consensus 83 ~~~~~~~~~~G~rG~al~si~~~s~~~i~S~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~GTtV~v~~l----f~n~p~- 156 (312)
T TIGR00585 83 FEDLERIETLGFRGEALASISSVSRLTITTKTSAADGLAWQA-LLEGGMIEEIKPAPRPVGTTVEVRDL----FYNLPV- 156 (312)
T ss_pred hhHhhcccccCccchHHHHHHhhCcEEEEEeecCCCcceEEE-EECCCcCcccccccCCCccEEEEchh----hccCch-
Confidence 99999999999999999999999999999999 677788777 322 777 999999
Q ss_pred hhHhhhcCCcHHHHHhhhhhc------ccCeEEEecC--Cc-ceeecC-ccChHH-HHH----HHHhhcceEeee-cCCc
Q psy1955 146 LQRDKEQIGDKEEKQWYRTVE------HTLVPLMKSQ--YQ-PSEKIV-ERACLL-EIA----SLNNLELLSVEG-TDDA 209 (512)
Q Consensus 146 ~~Rrk~lks~~~E~~ki~~lv------~p~Vs~~~~~--~~-~~~~t~-~~s~~~-~i~----~~~~~~l~~i~~-~~~~ 209 (512)
||+++++.+.|+.++.+++ ||+|+|.... +. ..+.+. ..++++ ++. ..+.++|++++. +.+
T Consensus 157 --r~~~~~~~~~~~~~i~~~l~~~al~~p~i~f~l~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~~~~l~~~~~~~~~- 233 (312)
T TIGR00585 157 --RRKFLKSPKKEFRKILDLLNRYALIHPDVSFSLTHDGKKVLQLSTKPNQSLKERRIRSVFGTAVLSKLFPLLEWEDG- 233 (312)
T ss_pred --hhhhccCcHHHHHHHHHHHHHHhhcCCCeEEEEEECCEEEEEEcCCCCCCHHHHHHHHHhChHhHhhceeeecccCC-
Confidence 9999988999999999998 9999766543 32 333333 567888 476 667888899884 333
Q ss_pred ccEEEEEEEecCcccCC-Cce-EEEEEeCc------hHHHHHHHHhhcCCCCCCeEEEEEeeCCCceEEEeecCCCccee
Q psy1955 210 FQLKVTGWITNVNFSTK-KMT-FLLFINNP------IKRMIEQVYSIYLPKGSFPFVYLSLCMDPKNVDVNVHPTKHEVH 281 (512)
Q Consensus 210 ~~~~v~G~is~p~~~~~-r~~-q~lfVNgR------i~k~I~~~Y~~~l~~~~~P~~~L~i~ipp~~iDVNvhP~K~eV~ 281 (512)
.++++||++.|.+..+ +.. ||+||||| +.++|+++|+.++|+++||+++|+|+|||..+||||||+|+||+
T Consensus 234 -~~~v~G~is~p~~~~~~~~~~q~ifvNgR~v~~~~l~k~I~~~y~~~~~~~~~P~~vL~i~~p~~~iDvNv~P~K~eV~ 312 (312)
T TIGR00585 234 -DLQLEGFISEPNVTRSRRSGWQFLFINGRPVELKLLLKAIREVYHEYLPKGQYPVFVLNLEIDPELVDVNVHPDKKEVR 312 (312)
T ss_pred -CEEEEEEEcCcccccCCCCcceEEEECCcEecchHHHHHHHHHHHHhccCCCCcEEEEEEEEChHHcccCCCCCchhhC
Confidence 6999999999987654 345 99999999 99999999999999999999999999999999999999999995
No 5
>KOG1978|consensus
Probab=100.00 E-value=4.3e-49 Score=416.55 Aligned_cols=272 Identities=29% Similarity=0.404 Sum_probs=238.8
Q ss_pred ccccChHHHHHHhcCCcccCHHHHHHHHHHccccCCCCeEEEEEEeCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCC
Q psy1955 7 IKKLDETVVNRIAAGEVIQRPANALKELLENSLDAKSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQ 86 (512)
Q Consensus 7 i~~l~~~~~~~i~s~~~i~~~~~~v~eLv~Ns~dA~a~~i~i~~~~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~ 86 (512)
|++||++++++|+||++|.++.+|||||||||||||||.|+|.+++.|...|+|.|||+||++.+++.++..|+|||+.+
T Consensus 1 Ik~i~~~tvhrI~S~qvI~sl~sAVKELvENSiDAGAT~I~I~~kdyG~d~IEV~DNG~GI~~~n~~~l~lkh~TSKi~~ 80 (672)
T KOG1978|consen 1 IKQIPKDTVHRICSSQVITSLVSAVKELVENSIDAGATAIDIKVKDYGSDSIEVSDNGSGISATDFEGLALKHTTSKIVS 80 (672)
T ss_pred CCCCChhhhhccccCCeeccHHHHHHHHHhcCcccCCceeeEecCCCCcceEEEecCCCCCCccchhhhhhhhhhhcccc
Confidence 78999999999999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred ccccccccccCCcchhhhhhhccceEEEEEecCCCCceEEEEeee---------------------hhhhhhhhcccchh
Q psy1955 87 FEDLNSISTFGFRGEALASISHVAHLTIITKTKTSPCAYRWCTYL---------------------ADLMALALMEMSQY 145 (512)
Q Consensus 87 ~~d~~~~~~~G~rGeaL~si~~~s~l~i~S~~~~~~~~~~~~~~~---------------------~dl~~~~F~n~Pv~ 145 (512)
|.|+..+.|||||||||.|||++|+|+|.||+++.+.|.++ .|+ ++| |.|+||
T Consensus 81 f~Dl~~l~T~GFRGEALSsLCa~~dv~I~Trt~~~~vgt~l-~~Dh~G~I~~k~~~ar~~GTTV~v~~L----F~tLPV- 154 (672)
T KOG1978|consen 81 FADLAVLFTLGFRGEALSSLCALGDVMISTRSHSAKVGTRL-VYDHDGHIIQKKPVARGRGTTVMVRQL----FSTLPV- 154 (672)
T ss_pred hhhhhhhhhhhhHHHHHHhhhhccceEEEEeeccCccceeE-EEccCCceeeeccccCCCCCEEEHhhh----cccCCC-
Confidence 99999999999999999999999999999999999999998 777 677 999999
Q ss_pred hhHhhhc-CCcHHHHHhhhhhc------ccCeEEEe-----cCC-cceeecC-ccChHHHHH----HHHhhcceEeeecC
Q psy1955 146 LQRDKEQ-IGDKEEKQWYRTVE------HTLVPLMK-----SQY-QPSEKIV-ERACLLEIA----SLNNLELLSVEGTD 207 (512)
Q Consensus 146 ~~Rrk~l-ks~~~E~~ki~~lv------~p~Vs~~~-----~~~-~~~~~t~-~~s~~~~i~----~~~~~~l~~i~~~~ 207 (512)
|||.+ ++.++|+.+++.++ +++|.|.. .++ ...+++. .++.+++|. ......|.++..
T Consensus 155 --R~kef~r~~Kref~k~i~li~~y~li~~~ir~~~~n~t~~~~k~iil~t~~~~~~k~~i~svfg~~~~~~l~p~~~-- 230 (672)
T KOG1978|consen 155 --RRKEFQRNIKRKFVKLISLIQAYALISTAIKFLVSNSTLAGKKNIILKTGGYGSDKINISSNFGSVEEENLEPLIF-- 230 (672)
T ss_pred --chHHhhcchhhhhhhHHhhHHHHHhhcccceeeeeeccccCCceeEEecCCcchHHHHHHhhhhhhhhhccccccc--
Confidence 98877 67999999999999 66663322 222 3778877 778888887 344455555441
Q ss_pred CcccEEEEEEEecCccc---CCCceEEEEEeCc------hHHHHHHHHhhcCCCCCCeEEEEEeeCCCceEEEeecCCCc
Q psy1955 208 DAFQLKVTGWITNVNFS---TKKMTFLLFINNP------IKRMIEQVYSIYLPKGSFPFVYLSLCMDPKNVDVNVHPTKH 278 (512)
Q Consensus 208 ~~~~~~v~G~is~p~~~---~~r~~q~lfVNgR------i~k~I~~~Y~~~l~~~~~P~~~L~i~ipp~~iDVNvhP~K~ 278 (512)
++.+.+. ...+.||+|||+| +.++|+++|+.|.. ++| |+|.+|++.+||||+|||+
T Consensus 231 ----------is~~~~g~~r~s~drqf~fIn~Rpv~~~~i~~~inevy~~~~~-~q~----l~i~V~~~~iDvNvtPDK~ 295 (672)
T KOG1978|consen 231 ----------ISSCHHGCGRSSEDRQFIFINRRPVFPSDICRVINEVYKLYNE-RQY----LFLDVPEGCIDVNVTPDKR 295 (672)
T ss_pred ----------cccccccccccCccceeeeecCccCCHHHHHHHHHHHhhhhcc-ccc----eeeeccccceeeeeCCCcc
Confidence 3433322 3467899999999 99999999999964 444 9999999999999999999
Q ss_pred ceeecchhhHHHHHHHHHHHHhcCC
Q psy1955 279 EVHFLHEDTIIERVQSMLEKTLLGS 303 (512)
Q Consensus 279 eV~f~~~~~I~~~I~~~l~~~l~~~ 303 (512)
.|+|.+|..++..++..+...+...
T Consensus 296 ~vll~~e~~vl~~l~~~l~~~~~s~ 320 (672)
T KOG1978|consen 296 QVLLSNERSVLFSLRNSLVDFYNSN 320 (672)
T ss_pred eeeccchHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999753
No 6
>KOG1979|consensus
Probab=100.00 E-value=1.9e-44 Score=372.16 Aligned_cols=213 Identities=58% Similarity=0.929 Sum_probs=202.5
Q ss_pred HHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCceeeEeecCCCCCCCcchhhhhhhccccCCccccccccccccccc
Q psy1955 289 IERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGF 368 (512)
Q Consensus 289 ~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~~~~~~~TSKi~~~~dl~~~~t~Gf 368 (512)
.++|++.|+|.|+|.+++ |+|..+.+|+..++++|||.||..+||..+|+||+|||++.|+||.+++||||
T Consensus 29 ~NAlKEliENSLDA~ST~---------I~V~vk~GGLKLlQisDnG~GI~reDl~ilCeRftTSKL~kFEDL~~lsTyGF 99 (694)
T KOG1979|consen 29 VNALKELIENSLDANSTS---------IDVLVKDGGLKLLQISDNGSGIRREDLPILCERFTTSKLTKFEDLFSLSTYGF 99 (694)
T ss_pred HHHHHHHHhccccCCCce---------EEEEEecCCeEEEEEecCCCccchhhhHHHHHHhhhhhcchhHHHHhhhhcCc
Confidence 367999999999998887 89999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhHhhhcceEEEEecCCCCCceEEEEecCcccccccccCCCCCceEEehhhcccchhhhcccCCChHHHHHHHHH
Q psy1955 369 RGEALASISHVAHLTIITKTKTSPCAYRASYIDSKLKDPIKPCAGNQGTQIIAEDLFYNIPTRRKALKQPSEEYNKIADV 448 (512)
Q Consensus 369 RGeALaSi~~~s~l~I~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTtV~V~~lF~n~PvRrk~~~~~~~e~~~i~~~ 448 (512)
||||||||+.|+.|+|+|+++++.|||++.|.+|++....+|++..+||+|+|.|||||+|+||+++++...|+.+|.++
T Consensus 100 RGEALASiShVA~VtV~TK~~~~~cayrasY~DGkm~~~pKpcAgk~GT~I~vedLFYN~~~Rrkal~~~~EE~~ki~dl 179 (694)
T KOG1979|consen 100 RGEALASISHVAHVTVTTKTAEGKCAYRASYRDGKMIATPKPCAGKQGTIITVEDLFYNMPTRRKALRNHAEEYRKIMDL 179 (694)
T ss_pred cHHHHhhhhheeEEEEEEeecCceeeeEEEeeccccccCCCCccCCCceEEEehHhhccCHHHHHHhcCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999988889999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCeEEEEEECCccceeeecCCCCCHHHHHHhhcChhhhccce-eeeccccccccc
Q psy1955 449 VSRYAVHNPHVGFTLKKQNENLADIRTNVNSSHSEVIGNIYGNNISRRVR-RFSSASQSALAR 510 (512)
Q Consensus 449 l~~yaL~~p~v~f~l~~~~~~~~~~~~~~~~s~~~~i~~ifG~~~~~~l~-~~~~~~~~~~~~ 510 (512)
|.+||+++|.|+|+|++.|.....+++....+..|++.++||..++.+|+ +++.-..++|+.
T Consensus 180 v~ryAIHn~~VsFs~rk~Gd~~~dl~t~~~~s~~D~ir~i~g~~Va~~ll~els~~~~~~l~f 242 (694)
T KOG1979|consen 180 VGRYAIHNPRVSFSLRKQGDTVADLRTSVSCSREDNIRNIYGVSVAKNLLNELSKCDSKLLKF 242 (694)
T ss_pred HHHHheeCCCcceEEeeccccccccccCCccccccchhhhhhhHHHHHHHHHhhhccCceeEE
Confidence 99999999999999999998888899988899999999999999999999 888555555544
No 7
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.8e-43 Score=385.18 Aligned_cols=206 Identities=34% Similarity=0.578 Sum_probs=189.2
Q ss_pred HHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCceeeEeecCCCCCCCcchhhhhhhccccCCccccccccccccccc
Q psy1955 289 IERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGF 368 (512)
Q Consensus 289 ~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~~~~~~~TSKi~~~~dl~~~~t~Gf 368 (512)
...|+++|+|+|+++++. |+|.++.+|...|.|.||||||+++|+..++.||+||||.+++||.++.||||
T Consensus 25 aSVVKELVENSlDAGAt~---------I~I~ve~gG~~~I~V~DNG~Gi~~~Dl~la~~rHaTSKI~~~~DL~~I~TlGF 95 (638)
T COG0323 25 ASVVKELVENSLDAGATR---------IDIEVEGGGLKLIRVRDNGSGIDKEDLPLALLRHATSKIASLEDLFRIRTLGF 95 (638)
T ss_pred HHHHHHHHhcccccCCCE---------EEEEEccCCccEEEEEECCCCCCHHHHHHHHhhhccccCCchhHHHHhhccCc
Confidence 356999999999999876 99999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhHhhhcceEEEEecCCCCCceEEEEecCcccccccccCCCCCceEEehhhcccchhhhcccCCChHHHHHHHHH
Q psy1955 369 RGEALASISHVAHLTIITKTKTSPCAYRASYIDSKLKDPIKPCAGNQGTQIIAEDLFYNIPTRRKALKQPSEEYNKIADV 448 (512)
Q Consensus 369 RGeALaSi~~~s~l~I~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTtV~V~~lF~n~PvRrk~~~~~~~e~~~i~~~ 448 (512)
|||||+|||+||.|+|+||+++...+|++...+|.+....+|++++.||||+|+|||||+|+|||++|+.++|+.+|.++
T Consensus 96 RGEAL~SIasVsrlti~Srt~~~~~~~~~~~~g~~~~~~~~p~a~~~GTtVeV~dLF~NtPaRrKflks~~~E~~~i~~v 175 (638)
T COG0323 96 RGEALASIASVSRLTITSRTAEASEGTQIYAEGGGMEVTVKPAAHPVGTTVEVRDLFYNTPARRKFLKSEKTEFGHITEL 175 (638)
T ss_pred cHHHHHHHHhhheeEEEeecCCcCceEEEEecCCcccccccCCCCCCCCEEEehHhhccChHHHHhhcccHHHHHHHHHH
Confidence 99999999999999999999988899988877776554677889999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCeEEEEEECCccceee-ecCCCCCHHHHHHhhcChhhhccceeeecc
Q psy1955 449 VSRYAVHNPHVGFTLKKQNENLADI-RTNVNSSHSEVIGNIYGNNISRRVRRFSSA 503 (512)
Q Consensus 449 l~~yaL~~p~v~f~l~~~~~~~~~~-~~~~~~s~~~~i~~ifG~~~~~~l~~~~~~ 503 (512)
|++|||+||+|+|+|.++|+....+ ....++...+++..+||..+.+++.+++.+
T Consensus 176 v~r~ALahp~I~F~l~~~gk~~~~~~~~~~~~~~~~ri~~i~G~~~~~~~l~i~~~ 231 (638)
T COG0323 176 INRYALAHPDISFSLSHNGKLRIELLKLPGTGDLEERIAAVYGTEFLKNALPIENE 231 (638)
T ss_pred HHHHHhcCCCeEEEEEECCceeeEEEecCCCCcHHHHHHHHhCHHHHHhhcccccC
Confidence 9999999999999999999954443 345556677789999999999999998866
No 8
>KOG1978|consensus
Probab=100.00 E-value=2.1e-37 Score=327.99 Aligned_cols=205 Identities=25% Similarity=0.444 Sum_probs=190.5
Q ss_pred HHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCceeeEeecCCCCCCCcchhhhhhhccccCCcccccccccccccc
Q psy1955 288 IIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFG 367 (512)
Q Consensus 288 I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~~~~~~~TSKi~~~~dl~~~~t~G 367 (512)
+..+|+++|+|.++++++. |+|.+..+|.+.|+|.||||||++.+++-++..|+|||+.+|.|+..+.|||
T Consensus 21 l~sAVKELvENSiDAGAT~---------I~I~~kdyG~d~IEV~DNG~GI~~~n~~~l~lkh~TSKi~~f~Dl~~l~T~G 91 (672)
T KOG1978|consen 21 LVSAVKELVENSIDAGATA---------IDIKVKDYGSDSIEVSDNGSGISATDFEGLALKHTTSKIVSFADLAVLFTLG 91 (672)
T ss_pred HHHHHHHHHhcCcccCCce---------eeEecCCCCcceEEEecCCCCCCccchhhhhhhhhhhcccchhhhhhhhhhh
Confidence 4478999999999999887 8999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhHhhhcceEEEEecCCCCCceEEEEecCcccccccccCCCCCceEEehhhcccchhhhccc-CCChHHHHHHH
Q psy1955 368 FRGEALASISHVAHLTIITKTKTSPCAYRASYIDSKLKDPIKPCAGNQGTQIIAEDLFYNIPTRRKAL-KQPSEEYNKIA 446 (512)
Q Consensus 368 fRGeALaSi~~~s~l~I~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTtV~V~~lF~n~PvRrk~~-~~~~~e~~~i~ 446 (512)
||||||.|||++|.|+|+||+++++.|.++.|+..+.....+++++++||||.|++||.|+|||||.+ ++.++++.++.
T Consensus 92 FRGEALSsLCa~~dv~I~Trt~~~~vgt~l~~Dh~G~I~~k~~~ar~~GTTV~v~~LF~tLPVR~kef~r~~Kref~k~i 171 (672)
T KOG1978|consen 92 FRGEALSSLCALGDVMISTRSHSAKVGTRLVYDHDGHIIQKKPVARGRGTTVMVRQLFSTLPVRRKEFQRNIKRKFVKLI 171 (672)
T ss_pred hHHHHHHhhhhccceEEEEeeccCccceeEEEccCCceeeeccccCCCCCEEEHhhhcccCCCchHHhhcchhhhhhhHH
Confidence 99999999999999999999999999999999866555578899999999999999999999999988 57899999999
Q ss_pred HHHHHHhhcCCCeEEEEEEC---CccceeeecCCCCCHHHHHHhhcChhhhccceeee
Q psy1955 447 DVVSRYAVHNPHVGFTLKKQ---NENLADIRTNVNSSHSEVIGNIYGNNISRRVRRFS 501 (512)
Q Consensus 447 ~~l~~yaL~~p~v~f~l~~~---~~~~~~~~~~~~~s~~~~i~~ifG~~~~~~l~~~~ 501 (512)
.++++||+++++|+|.+.+. ++..+.+++.+.+++.+.+..+||....+.|.++.
T Consensus 172 ~li~~y~li~~~ir~~~~n~t~~~~k~iil~t~~~~~~k~~i~svfg~~~~~~l~p~~ 229 (672)
T KOG1978|consen 172 SLIQAYALISTAIKFLVSNSTLAGKKNIILKTGGYGSDKINISSNFGSVEEENLEPLI 229 (672)
T ss_pred hhHHHHHhhcccceeeeeeccccCCceeEEecCCcchHHHHHHhhhhhhhhhcccccc
Confidence 99999999999999999874 34455688889999999999999999999999876
No 9
>KOG1977|consensus
Probab=100.00 E-value=2e-37 Score=324.31 Aligned_cols=270 Identities=24% Similarity=0.293 Sum_probs=223.0
Q ss_pred cccccChHHHHHHhcCCcccCHHHHHHHHHHccccCCCCeEEEEEEeCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCC
Q psy1955 6 KIKKLDETVVNRIAAGEVIQRPANALKELLENSLDAKSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLT 85 (512)
Q Consensus 6 ~i~~l~~~~~~~i~s~~~i~~~~~~v~eLv~Ns~dA~a~~i~i~~~~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~ 85 (512)
+|++||.++.++++||..+.+++++|.||+.||+||+||.|.|+++.... .+.|.|||.||.++|++.+++||+|||++
T Consensus 1 ~Ik~L~~~V~~~lrSg~~~~sla~~VeElv~NSiDA~At~V~v~V~~~t~-sv~ViDdG~G~~rdDl~~lg~ry~TSK~h 79 (1142)
T KOG1977|consen 1 MIKCLSVEVQAKLRSGLAISSLAQCVEELVLNSIDAEATCVAVRVNMETF-SVQVIDDGFGMGRDDLEKLGNRYFTSKCH 79 (1142)
T ss_pred CccccchhHHHHHhccchHHHHHHHHHHHHhhccccCceEEEEEecCcee-EEEEEecCCCccHHHHHHHHhhhhhhhce
Confidence 49999999999999999999999999999999999999999999987754 49999999999999999999999999999
Q ss_pred CccccccccccCCcchhhhhhhccceEEEEEecCCCCceEEE-----------Eeee------------hhhhhhhhccc
Q psy1955 86 QFEDLNSISTFGFRGEALASISHVAHLTIITKTKTSPCAYRW-----------CTYL------------ADLMALALMEM 142 (512)
Q Consensus 86 ~~~d~~~~~~~G~rGeaL~si~~~s~l~i~S~~~~~~~~~~~-----------~~~~------------~dl~~~~F~n~ 142 (512)
...|+.+..+|||||||||||+.+|.+.+.|+..+.+.+|.+ +..+ .|| ||++
T Consensus 80 ~~ndl~~~~tyGfRGeALasIsd~s~l~v~skkk~r~~~~~~kk~~~gs~~~~l~iD~~R~~sGTtVtV~dl----fY~l 155 (1142)
T KOG1977|consen 80 SVNDLENPRTYGFRGEALASISDMSSLVVISKKKNRTMKTFVKKFQSGSALKALEIDVTRASSGTTVTVYDL----FYQL 155 (1142)
T ss_pred eccccccccccccchhhhhhhhhhhhhhhhhhhcCCchhHHHHHHhccccceecccccccccCCcEEEeHHh----hhcc
Confidence 999999999999999999999999999999999998877651 1111 889 9999
Q ss_pred chhhhHhhhcC-CcHHHHHhhhhhc------ccCeEEEecCC---cceeecC-ccChHHHHHHHHhhcceEeeecCCccc
Q psy1955 143 SQYLQRDKEQI-GDKEEKQWYRTVE------HTLVPLMKSQY---QPSEKIV-ERACLLEIASLNNLELLSVEGTDDAFQ 211 (512)
Q Consensus 143 Pv~~~Rrk~lk-s~~~E~~ki~~lv------~p~Vs~~~~~~---~~~~~t~-~~s~~~~i~~~~~~~l~~i~~~~~~~~ 211 (512)
|| ||+.+. .+++++.+|.+.| ||.|+|...+. +..++++ +.+..+.+- .+. .
T Consensus 156 PV---RRr~k~~~P~k~fe~Ik~~i~~i~lmHp~iSfsv~~~~s~~~~lq~n~s~~~~eilf------------r~k--~ 218 (1142)
T KOG1977|consen 156 PV---RRRLKCMDPRKEFEKIKQRIEAISLMHPSISFSVRNDVSGSMVLQLNKSQKLREILF------------RYK--E 218 (1142)
T ss_pred hh---hhhhhcCCHHHHHHHHHHHHHHHHhhccceeEEEEeccCcceeeecCccchhhhhhh------------hhc--c
Confidence 99 998653 6899999998877 99998887543 2677776 444333221 111 0
Q ss_pred EEEEEEEecCcccCCCceEEEEEeCc------hHHHHHHHHhhcCCCCCCeEEEEEeeCCCceEEEeecCCCcceeecch
Q psy1955 212 LKVTGWITNVNFSTKKMTFLLFINNP------IKRMIEQVYSIYLPKGSFPFVYLSLCMDPKNVDVNVHPTKHEVHFLHE 285 (512)
Q Consensus 212 ~~v~G~is~p~~~~~r~~q~lfVNgR------i~k~I~~~Y~~~l~~~~~P~~~L~i~ipp~~iDVNvhP~K~eV~f~~~ 285 (512)
+.+ ++...+-++..+++|||+| ..+.+.+..+.-. -...|-|+|++.||...|||-.+|+|+-|.|.+|
T Consensus 219 ~e~----~~s~~~~N~t~g~l~v~~~~~~~~~kh~~~~q~lR~~~-~~~~P~yvi~v~cp~~ly~vs~epakt~ieF~~w 293 (1142)
T KOG1977|consen 219 FEL----SSSEAHYNKTMGFLFVNKRLVLRTKKHKLIDQLLRKES-IICKPKYVINVQCPFCLYDVSMEPAKTLIEFQNW 293 (1142)
T ss_pred ccc----ccchhccccccceeeecchhhhccchhhHHHHHHHhhh-eeccCcceeecccchhhhhhhcCcccchhhhhcc
Confidence 111 1222223456789999999 6677777766532 2346889999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcC
Q psy1955 286 DTIIERVQSMLEKTLLG 302 (512)
Q Consensus 286 ~~I~~~I~~~l~~~l~~ 302 (512)
+.++-.|++.+..+|..
T Consensus 294 ~~~l~~I~~~~~~~~kk 310 (1142)
T KOG1977|consen 294 DTLLFCIQEGVKMFLKK 310 (1142)
T ss_pred hhhHhHHHHhhhhhhhc
Confidence 99999999999988854
No 10
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=100.00 E-value=9e-36 Score=328.26 Aligned_cols=205 Identities=35% Similarity=0.586 Sum_probs=185.9
Q ss_pred HHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCceeeEeecCCCCCCCcchhhhhhhccccCCcccccccccccccc
Q psy1955 288 IIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFG 367 (512)
Q Consensus 288 I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~~~~~~~TSKi~~~~dl~~~~t~G 367 (512)
....|+++|+|+++++++. |+|.+..+|...++|.|||+||+++++..++.+|+|||+++++|+.++.|+|
T Consensus 23 ~~svvkElveNsiDAgat~---------I~v~i~~~g~~~i~V~DnG~Gi~~~~~~~~~~~~~tsKi~~~~dl~~~~t~G 93 (617)
T PRK00095 23 PASVVKELVENALDAGATR---------IDIEIEEGGLKLIRVRDNGCGISKEDLALALARHATSKIASLDDLEAIRTLG 93 (617)
T ss_pred HHHHHHHHHHHHHhCCCCE---------EEEEEEeCCeEEEEEEEcCCCCCHHHHHHHhhccCCCCCCChhHhhccccCC
Confidence 3467999999999998664 7788877888899999999999999999999999999999999999999999
Q ss_pred ccchhhhhHhhhcceEEEEecCCCCCceEEEEecCcccccccccCCCCCceEEehhhcccchhhhcccCCChHHHHHHHH
Q psy1955 368 FRGEALASISHVAHLTIITKTKTSPCAYRASYIDSKLKDPIKPCAGNQGTQIIAEDLFYNIPTRRKALKQPSEEYNKIAD 447 (512)
Q Consensus 368 fRGeALaSi~~~s~l~I~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTtV~V~~lF~n~PvRrk~~~~~~~e~~~i~~ 447 (512)
||||||+||+++|.|+|+||+.++..+|++.+.+|+.. ...+.+++.||||+|+|||+|+|||||++++.+.|+.+|.+
T Consensus 94 frGeAL~sI~~vs~l~i~s~~~~~~~~~~~~~~~G~~~-~~~~~~~~~GT~V~v~~LF~n~P~Rrkflk~~~~e~~~i~~ 172 (617)
T PRK00095 94 FRGEALPSIASVSRLTLTSRTADAAEGWQIVYEGGEIV-EVKPAAHPVGTTIEVRDLFFNTPARRKFLKSEKTELGHIDD 172 (617)
T ss_pred cchhHHHhhhhceEEEEEEecCCCCceEEEEecCCcCc-ceecccCCCCCEEEechhhccCcHHHHhccCcHHHHHHHHH
Confidence 99999999999999999999998888999998887654 34567789999999999999999999999988999999999
Q ss_pred HHHHHhhcCCCeEEEEEECCccceeeecCCCCCHHHHHHhhcChhhhccceeeeccc
Q psy1955 448 VVSRYAVHNPHVGFTLKKQNENLADIRTNVNSSHSEVIGNIYGNNISRRVRRFSSAS 504 (512)
Q Consensus 448 ~l~~yaL~~p~v~f~l~~~~~~~~~~~~~~~~s~~~~i~~ifG~~~~~~l~~~~~~~ 504 (512)
++++||++||+|+|+|.++++.. +.+.++.++.+++.++||......+++++.+.
T Consensus 173 ~v~~~Al~~p~i~f~l~~~~~~~--~~~~~~~~~~~~i~~i~g~~~~~~l~~~~~~~ 227 (617)
T PRK00095 173 VVNRLALAHPDVAFTLTHNGKLV--LQTRGAGQLLQRLAAILGREFAENALPIDAEH 227 (617)
T ss_pred HHHHHhhcCCCcEEEEEECCEEE--EEeCCCCCHHHHHHHHhCHHhHhheEEEeccC
Confidence 99999999999999999998765 55556678999999999999999999988654
No 11
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.6e-34 Score=293.29 Aligned_cols=214 Identities=40% Similarity=0.679 Sum_probs=184.2
Q ss_pred hhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCceeeEeecCCCCCCCcchhhhhhhccccCCcccccccccccc
Q psy1955 286 DTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSIST 365 (512)
Q Consensus 286 ~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~~~~~~~TSKi~~~~dl~~~~t 365 (512)
..+...|.++|+|++++.++. |.|.....+...+.|.|||+||+++++..++.+|+|||+.+++|+..+.+
T Consensus 21 ~~~~~~l~eLi~Na~dA~a~~---------I~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsk~~~~~~~~~~~~ 91 (312)
T TIGR00585 21 ERPASVVKELVENSLDAGATR---------IDVEIEEGGLKLIEVSDNGSGIDKEDLPLACERHATSKIQSFEDLERIET 91 (312)
T ss_pred hhHHHHHHHHHHHHHHCCCCE---------EEEEEEeCCEEEEEEEecCCCCCHHHHHHHhhCCCcCCCCChhHhhcccc
Confidence 345577999999999987643 55656656666799999999999999999999999999999999999999
Q ss_pred ccccchhhhhHhhhcceEEEEec-CCCCCceEEEEecCcccccccccCCCCCceEEehhhcccchhhhcccCCChHHHHH
Q psy1955 366 FGFRGEALASISHVAHLTIITKT-KTSPCAYRASYIDSKLKDPIKPCAGNQGTQIIAEDLFYNIPTRRKALKQPSEEYNK 444 (512)
Q Consensus 366 ~GfRGeALaSi~~~s~l~I~T~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~GTtV~V~~lF~n~PvRrk~~~~~~~e~~~ 444 (512)
+|||||||+||+.+|.++|+||+ +++.++|++. .+|+......+.+.+.||||+|++||+|+|+||+++++.++|+..
T Consensus 92 ~G~rG~al~si~~~s~~~i~S~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~GTtV~v~~lf~n~p~r~~~~~~~~~~~~~ 170 (312)
T TIGR00585 92 LGFRGEALASISSVSRLTITTKTSAADGLAWQAL-LEGGMIEEIKPAPRPVGTTVEVRDLFYNLPVRRKFLKSPKKEFRK 170 (312)
T ss_pred cCccchHHHHHHhhCcEEEEEeecCCCcceEEEE-ECCCcCcccccccCCCccEEEEchhhccCchhhhhccCcHHHHHH
Confidence 99999999999999999999999 7778888776 455533344567789999999999999999999988888999999
Q ss_pred HHHHHHHHhhcCCCeEEEEEECCccceeeecCCCCCHHH-HHHhhcChhhhccceeeecccccccc
Q psy1955 445 IADVVSRYAVHNPHVGFTLKKQNENLADIRTNVNSSHSE-VIGNIYGNNISRRVRRFSSASQSALA 509 (512)
Q Consensus 445 i~~~l~~yaL~~p~v~f~l~~~~~~~~~~~~~~~~s~~~-~i~~ifG~~~~~~l~~~~~~~~~~~~ 509 (512)
+++++++|||+||+|+|.|.++++....+.+.++.++.+ ++.++||....+.|++++.....++.
T Consensus 171 i~~~l~~~al~~p~i~f~l~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~~~~l~~~~~~~~~~~~ 236 (312)
T TIGR00585 171 ILDLLNRYALIHPDVSFSLTHDGKKVLQLSTKPNQSLKERRIRSVFGTAVLSKLFPLLEWEDGDLQ 236 (312)
T ss_pred HHHHHHHHhhcCCCeEEEEEECCEEEEEEcCCCCCCHHHHHHHHHhChHhHhhceeeecccCCCEE
Confidence 999999999999999999999998876776666778999 69999999999999999854444443
No 12
>KOG1977|consensus
Probab=99.95 E-value=1.4e-28 Score=258.24 Aligned_cols=188 Identities=27% Similarity=0.460 Sum_probs=153.4
Q ss_pred HHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCceeeEeecCCCCCCCcchhhhhhhccccCCccccccccccccccc
Q psy1955 289 IERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGF 368 (512)
Q Consensus 289 ~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~~~~~~~TSKi~~~~dl~~~~t~Gf 368 (512)
...|++++.|.+++.++. |.|.++-.. -.++|.|||.|+..+|++.++.||+|||++...|+..-.||||
T Consensus 23 a~~VeElv~NSiDA~At~---------V~v~V~~~t-~sv~ViDdG~G~~rdDl~~lg~ry~TSK~h~~ndl~~~~tyGf 92 (1142)
T KOG1977|consen 23 AQCVEELVLNSIDAEATC---------VAVRVNMET-FSVQVIDDGFGMGRDDLEKLGNRYFTSKCHSVNDLENPRTYGF 92 (1142)
T ss_pred HHHHHHHHhhccccCceE---------EEEEecCce-eEEEEEecCCCccHHHHHHHHhhhhhhhceecccccccccccc
Confidence 356888889999998877 455555332 2588999999999999999999999999999999999999999
Q ss_pred cchhhhhHhhhcceEEEEecCCCCCceEE-EEecC-ccc-ccccccCCCCCceEEehhhcccchhhhcccC-CChHHHHH
Q psy1955 369 RGEALASISHVAHLTIITKTKTSPCAYRA-SYIDS-KLK-DPIKPCAGNQGTQIIAEDLFYNIPTRRKALK-QPSEEYNK 444 (512)
Q Consensus 369 RGeALaSi~~~s~l~I~T~~~~~~~~~~~-~~~~~-~~~-~~~~~~~~~~GTtV~V~~lF~n~PvRrk~~~-~~~~e~~~ 444 (512)
||||||||+.+|.+.++|+..+.+.+|.. .+..| +.. -.+.-.+...||||+|+||||++||||++.. .+++++++
T Consensus 93 RGeALasIsd~s~l~v~skkk~r~~~~~~kk~~~gs~~~~l~iD~~R~~sGTtVtV~dlfY~lPVRRr~k~~~P~k~fe~ 172 (1142)
T KOG1977|consen 93 RGEALASISDMSSLVVISKKKNRTMKTFVKKFQSGSALKALEIDVTRASSGTTVTVYDLFYQLPVRRRLKCMDPRKEFEK 172 (1142)
T ss_pred chhhhhhhhhhhhhhhhhhhcCCchhHHHHHHhccccceecccccccccCCcEEEeHHhhhcchhhhhhhcCCHHHHHHH
Confidence 99999999999999999999998877752 23322 222 1233457789999999999999999999764 47899999
Q ss_pred HHHHHHHHhhcCCCeEEEEEECCccceeeecCCCCCHHHHHH
Q psy1955 445 IADVVSRYAVHNPHVGFTLKKQNENLADIRTNVNSSHSEVIG 486 (512)
Q Consensus 445 i~~~l~~yaL~~p~v~f~l~~~~~~~~~~~~~~~~s~~~~i~ 486 (512)
|++.+.+.||+||+|+|++.++.+-...+++++.+++.+.+-
T Consensus 173 Ik~~i~~i~lmHp~iSfsv~~~~s~~~~lq~n~s~~~~eilf 214 (1142)
T KOG1977|consen 173 IKQRIEAISLMHPSISFSVRNDVSGSMVLQLNKSQKLREILF 214 (1142)
T ss_pred HHHHHHHHHhhccceeEEEEeccCcceeeecCccchhhhhhh
Confidence 999999999999999999998776544466666666666543
No 13
>cd03483 MutL_Trans_MLH1 MutL_Trans_MLH1: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH1 (MutL homologue 1). This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking hMLH1 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot syndrome (HNPCC variant). Mutation in hMLH1 accounts for a large fraction of HNPCC families.
Probab=99.94 E-value=6.9e-27 Score=207.51 Aligned_cols=114 Identities=55% Similarity=0.876 Sum_probs=103.0
Q ss_pred hHHHHH----HHHhhcceEeeecCC--cccEEEEEEEecCcccCCCceEEEEEeCc------hHHHHHHHHhhcCCCCCC
Q psy1955 188 CLLEIA----SLNNLELLSVEGTDD--AFQLKVTGWITNVNFSTKKMTFLLFINNP------IKRMIEQVYSIYLPKGSF 255 (512)
Q Consensus 188 ~~~~i~----~~~~~~l~~i~~~~~--~~~~~v~G~is~p~~~~~r~~q~lfVNgR------i~k~I~~~Y~~~l~~~~~ 255 (512)
++++|. ..++.+|++++.+.+ ...+++.||+|+|....+++.||+||||| |.++|.++|++++|+++|
T Consensus 2 ~~~~i~~v~G~~~~~~li~i~~~~~~~~~~~~i~G~is~p~~~~~~~~q~~fVNgR~V~~~~l~~aI~~~Y~~~l~~~~~ 81 (127)
T cd03483 2 TKDNIRSVYGAAVANELIEVEISDDDDDLGFKVKGLISNANYSKKKIIFILFINNRLVECSALRRAIENVYANYLPKGAH 81 (127)
T ss_pred HHHHHHHHhCHHHHhcceEEecccCCcCCcEEEEEEEcCchhcCCCceEEEEEcCCEecCHHHHHHHHHHHHHhCcCCCc
Confidence 456665 777889999996652 12699999999998877788999999999 999999999999999999
Q ss_pred eEEEEEeeCCCceEEEeecCCCcceeecchhhHHHHHHHHHHHHhc
Q psy1955 256 PFVYLSLCMDPKNVDVNVHPTKHEVHFLHEDTIIERVQSMLEKTLL 301 (512)
Q Consensus 256 P~~~L~i~ipp~~iDVNvhP~K~eV~f~~~~~I~~~I~~~l~~~l~ 301 (512)
|+++|+|++||+.|||||||+|+||+|.+|+.|++.|+++|+++|.
T Consensus 82 P~~~L~i~i~p~~vDVNVHP~K~eV~f~~e~~i~~~i~~~v~~~L~ 127 (127)
T cd03483 82 PFVYLSLEIPPENVDVNVHPTKREVHFLNEEEIIERIQKLVEDKLS 127 (127)
T ss_pred cEEEEEEEeChHHeeeccCCCccEEEecCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999873
No 14
>PF01119 DNA_mis_repair: DNA mismatch repair protein, C-terminal domain; InterPro: IPR013507 This entry represents the C-terminal domain of DNA mismatch repair proteins, such as MutL. This domain functions in promoting dimerisation []. The dimeric MutL protein has a key function in communicating mismatch recognition by MutS to downstream repair processes. Mismatch repair contributes to the overall fidelity of DNA replication by targeting mispaired bases that arise through replication errors during homologous recombination and as a result of DNA damage. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1B62_A 1NHJ_A 1BKN_B 1NHH_A 1B63_A 1NHI_A 3NA3_A 1EA6_A 1H7U_A 1H7S_B ....
Probab=99.93 E-value=2.9e-25 Score=195.11 Aligned_cols=109 Identities=28% Similarity=0.578 Sum_probs=96.3
Q ss_pred HHHHHHhhcceEeeecCCcccEEEEEEEecCccc-CCCceEEEEEeCc------hHHHHHHHHhhcCCCCCCeEEEEEee
Q psy1955 191 EIASLNNLELLSVEGTDDAFQLKVTGWITNVNFS-TKKMTFLLFINNP------IKRMIEQVYSIYLPKGSFPFVYLSLC 263 (512)
Q Consensus 191 ~i~~~~~~~l~~i~~~~~~~~~~v~G~is~p~~~-~~r~~q~lfVNgR------i~k~I~~~Y~~~l~~~~~P~~~L~i~ 263 (512)
.+...++++|++++.+.+ .++++||+|.|... .++..||+||||| +.++|.++|+..++.+++|+++|+|+
T Consensus 4 i~G~~~~~~l~~i~~~~~--~~~i~G~is~p~~~~~~~~~q~ifVN~R~V~~~~l~~~I~~~y~~~~~~~~~P~~vL~i~ 81 (119)
T PF01119_consen 4 IFGKEFASNLIEIDSEDE--DFSIEGYISKPDVSRSSRDRQFIFVNGRPVENKALSKAINEAYRERLPKGRYPIFVLFIE 81 (119)
T ss_dssp HHHHHHHCCEEEEEEEEC--CEEEEEEEE-SSCSBSSCTCEEEEETTEEE--HHHHHHHHHHHHCTTCTTSB-EEEEEEE
T ss_pred eECHHHHhccEEEeccCC--CEEEEEEEECchhccCCCCcEEEEeCCCeEeChHHHHHHHHHHhhcccCCCCceEEEEEE
Confidence 344778899999997776 69999999999876 4568999999999 99999999999999999999999999
Q ss_pred CCCceEEEeecCCCcceeecchhhHHHHHHHHHHHHhc
Q psy1955 264 MDPKNVDVNVHPTKHEVHFLHEDTIIERVQSMLEKTLL 301 (512)
Q Consensus 264 ipp~~iDVNvhP~K~eV~f~~~~~I~~~I~~~l~~~l~ 301 (512)
|||+.|||||||+|+||+|.+|++|++.|+++|+++|.
T Consensus 82 ~p~~~vDVNvhP~K~eV~f~~e~~i~~~i~~~i~~~L~ 119 (119)
T PF01119_consen 82 IPPSEVDVNVHPAKREVRFRDEDEILNLIEEAIREALS 119 (119)
T ss_dssp -SGGGEEETSSTTTT-EEETTHHHHHHHHHHHHHHHH-
T ss_pred cchHHccccccccceEEEecCHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999873
No 15
>cd03482 MutL_Trans_MutL MutL_Trans_MutL: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to Escherichia coli MutL. EcMutL belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from the ATP-binding site to the DNA breakage/reunion regions of the enzymes. It has been suggested that during initiation of DNA mismatch repair in E. coli, the mismatch recognition protein MutS recruits MutL in the presence of ATP. The MutS(ATP)-MutL ternary complex formed, then recruits the latent endonuclease MutH. Prokaryotic MutS and MutL are homodimers.
Probab=99.92 E-value=5.2e-25 Score=194.39 Aligned_cols=106 Identities=30% Similarity=0.496 Sum_probs=98.1
Q ss_pred HHHhhcceEeeecCCcccEEEEEEEecCccc-CCCceEEEEEeCc------hHHHHHHHHhhcCCCCCCeEEEEEeeCCC
Q psy1955 194 SLNNLELLSVEGTDDAFQLKVTGWITNVNFS-TKKMTFLLFINNP------IKRMIEQVYSIYLPKGSFPFVYLSLCMDP 266 (512)
Q Consensus 194 ~~~~~~l~~i~~~~~~~~~~v~G~is~p~~~-~~r~~q~lfVNgR------i~k~I~~~Y~~~l~~~~~P~~~L~i~ipp 266 (512)
..++++|++++.+.+ .+++.||+|.|..+ .+++.||+||||| |.++|.++|+.+++.++||+++|+|+|||
T Consensus 11 ~~~~~~li~i~~~~~--~~~i~G~is~p~~~r~~~~~q~ifVN~R~V~~~~l~~ai~~~y~~~~~~~~~P~~vL~l~ipp 88 (123)
T cd03482 11 EDFAEQALAIDEEAG--GLRLSGWIALPTFARSQADIQYFYVNGRMVRDKLISHAVRQAYSDVLHGGRHPAYVLYLELDP 88 (123)
T ss_pred HHHHhccceEeccCC--CEEEEEEEeCchhccCCCCcEEEEEcCcEECChHHHHHHHHHHHHhccCCCCcEEEEEEEcCh
Confidence 677889999996554 69999999999865 4578899999999 99999999999999999999999999999
Q ss_pred ceEEEeecCCCcceeecchhhHHHHHHHHHHHHhc
Q psy1955 267 KNVDVNVHPTKHEVHFLHEDTIIERVQSMLEKTLL 301 (512)
Q Consensus 267 ~~iDVNvhP~K~eV~f~~~~~I~~~I~~~l~~~l~ 301 (512)
+.|||||||+|+||+|.+|..|.+.|+++|+++|.
T Consensus 89 ~~vDvNVhP~K~eV~f~~e~~i~~~i~~~i~~~L~ 123 (123)
T cd03482 89 AQVDVNVHPAKHEVRFRDSRLVHDFIYHAVKKALA 123 (123)
T ss_pred HheeeccCCCccEEEECCHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999873
No 16
>cd03485 MutL_Trans_hPMS_1_like MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2. hPSM1 and yMLH2 are members of the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. PMS1 forms a heterodimer with MLH1. The MLH1-PMS1 complex functions in meiosis. Loss of yMLH2 results in a small but significant decrease in spore viability and a significant increase in gene conversion frequencies. A role for hMLH1-hPMS1 in DNA mismatch repair has not been established. Mutation in hMLH1 accounts for a large fraction of Lynch syndrome (HNPCC) families, however there is no convincing evidence to support hPMS1 having a role in HNPCC predisposition.
Probab=99.91 E-value=5.3e-24 Score=190.40 Aligned_cols=113 Identities=24% Similarity=0.426 Sum_probs=98.9
Q ss_pred hHHHHH----HHHhhcceEeeecCCcccEEEEEEEecCcc--c-CCCceEEEEEeCc-------hHHHHHHHHhhcC---
Q psy1955 188 CLLEIA----SLNNLELLSVEGTDDAFQLKVTGWITNVNF--S-TKKMTFLLFINNP-------IKRMIEQVYSIYL--- 250 (512)
Q Consensus 188 ~~~~i~----~~~~~~l~~i~~~~~~~~~~v~G~is~p~~--~-~~r~~q~lfVNgR-------i~k~I~~~Y~~~l--- 250 (512)
+.+++. ..++.+|++++.+.+...++++||+|.|.. . .+++.||+||||| +.++|+++|+.++
T Consensus 2 l~~~i~~v~G~~~~~~li~i~~~~~~~~~~i~G~is~p~~~~~~~~~~~q~~fVN~R~v~~~~~l~k~i~~~y~~~~~~~ 81 (132)
T cd03485 2 HKEALARVLGTAVAANMVPVQSTDEDPQISLEGFLPKPGSDVSKTKSDGKFISVNSRPVSLGKDIGKLLRQYYSSAYRKS 81 (132)
T ss_pred HHHHHHHHhCHHHHhccEEEeccCCCCcEEEEEEECCCCcCCCcccCCcEEEEECCeecccchHHHHHHHHHHHHHhccc
Confidence 345554 677888999997662126999999999943 4 3678899999999 7889999999999
Q ss_pred CCCCCeEEEEEeeCCCceEEEeecCCCcceeecchhhHHHHHHHHHHHHh
Q psy1955 251 PKGSFPFVYLSLCMDPKNVDVNVHPTKHEVHFLHEDTIIERVQSMLEKTL 300 (512)
Q Consensus 251 ~~~~~P~~~L~i~ipp~~iDVNvhP~K~eV~f~~~~~I~~~I~~~l~~~l 300 (512)
+.++||+++|+|+|||+.|||||||+|+||+|.+|+.|++.|+++|+..+
T Consensus 82 ~~~~~P~~~L~i~~~~~~vDVNVhP~K~eV~f~~e~~v~~~i~~~v~~~~ 131 (132)
T cd03485 82 SLRRYPVFFLNILCPPGLVDVNIEPDKDDVLLQNKEAVLQAVENLLESLY 131 (132)
T ss_pred cccCCCEEEEEEEcCCCceeeccCCccCEEEEcChHHHHHHHHHHHHHHc
Confidence 89999999999999999999999999999999999999999999999876
No 17
>cd03486 MutL_Trans_MLH3 MutL_Trans_MLH3: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH3 (MutL homologue 3). MLH3 belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with MLH3. The MLH1-MLH3 complex plays a role in meiosis. A role for hMLH1-hMLH3 in DNA mismatch repair (MMR) has not been established. It has been suggested that hMLH3 may be a low risk gene for colorectal cancer; however there is little evidence to support it having a role in classical HNPCC.
Probab=99.90 E-value=1.8e-23 Score=189.07 Aligned_cols=104 Identities=16% Similarity=0.330 Sum_probs=95.7
Q ss_pred HHHhhcceEeeecCCcccEEEEEEEecCcccCCCceEEEEEeCc------hHHHHHHHHhh--------cC---------
Q psy1955 194 SLNNLELLSVEGTDDAFQLKVTGWITNVNFSTKKMTFLLFINNP------IKRMIEQVYSI--------YL--------- 250 (512)
Q Consensus 194 ~~~~~~l~~i~~~~~~~~~~v~G~is~p~~~~~r~~q~lfVNgR------i~k~I~~~Y~~--------~l--------- 250 (512)
..+++.|++++.+.+ .+++.||+|.|. ..+++.||+||||| +.++|+++|+. .+
T Consensus 12 ~~~~~~l~~v~~~~~--~~~v~G~is~p~-~~sk~~q~ifVN~R~v~~~~l~~aI~~~y~~~~~~~~~~~~~~~~~~~~~ 88 (141)
T cd03486 12 LVLAQKLKEVSAKFQ--EYEVSGYISSEG-HYSKSFQFIYVNGRLYLKTRFHKLINKLFRKTSAVAKNKSSPQSKSSRRG 88 (141)
T ss_pred hhhhccEEEeecccC--cEEEEEEEcCCC-CCCCceEEEEECCEEechHHHHHHHHHHHhhccccccccccccccccccc
Confidence 667788999997665 699999999998 45688999999999 99999999999 44
Q ss_pred --CCCCCeEEEEEeeCCCceEEEeecCCCcceeecchhhHHHHHHHHHHHHh
Q psy1955 251 --PKGSFPFVYLSLCMDPKNVDVNVHPTKHEVHFLHEDTIIERVQSMLEKTL 300 (512)
Q Consensus 251 --~~~~~P~~~L~i~ipp~~iDVNvhP~K~eV~f~~~~~I~~~I~~~l~~~l 300 (512)
|.++||+++|+|+|||+.|||||||+|+||+|.+|+.|++.|++.|+++|
T Consensus 89 ~~~~~~~P~~vL~i~~p~~~vDvNvhP~K~eV~f~~~~~i~~~i~~~i~~~L 140 (141)
T cd03486 89 KRSQESYPVFVLNITCPASEYDLSQEPSKTIIEFKDWKTLLPLILEVVKSFL 140 (141)
T ss_pred cCCccCCCEEEEEEecCchHheeeeCCceeEEEecChHHHHHHHHHHHHHHh
Confidence 78899999999999999999999999999999999999999999999987
No 18
>cd00782 MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to human MLH1, hPMS2, hPMS1, hMLH3 and E. coli MutL, MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking either hMLH1 or hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot synd
Probab=99.90 E-value=3.1e-23 Score=182.98 Aligned_cols=105 Identities=35% Similarity=0.658 Sum_probs=97.1
Q ss_pred HHHhhcceEeeecCCcccEEEEEEEecCccc-CCCceEEEEEeCc------hHHHHHHHHhhcCCCCCCeEEEEEeeCCC
Q psy1955 194 SLNNLELLSVEGTDDAFQLKVTGWITNVNFS-TKKMTFLLFINNP------IKRMIEQVYSIYLPKGSFPFVYLSLCMDP 266 (512)
Q Consensus 194 ~~~~~~l~~i~~~~~~~~~~v~G~is~p~~~-~~r~~q~lfVNgR------i~k~I~~~Y~~~l~~~~~P~~~L~i~ipp 266 (512)
..+.++|++++.+.+ .++++||+|.|..+ .+++.||+||||| +.++|+++|+.+++.++||+++|+|+|||
T Consensus 11 ~~~~~~l~~i~~~~~--~~~i~G~is~~~~~~~~~~~q~~fVN~R~v~~~~l~~ai~~~y~~~~~~~~~P~~~L~i~~~~ 88 (122)
T cd00782 11 KEVAKNLIEVELESG--DFRISGYISKPDFGRSSKDRQFLFVNGRPVRDKLLSKAINEAYRSYLPKGRYPVFVLNLELPP 88 (122)
T ss_pred HHHHhcceEEeccCC--CEEEEEEEECchhhcCCCccEEEEECCeEecCHHHHHHHHHHHHHhCcCCCCcEEEEEEEeCh
Confidence 667788999997765 69999999999864 5678899999999 99999999999999999999999999999
Q ss_pred ceEEEeecCCCcceeecchhhHHHHHHHHHHHHh
Q psy1955 267 KNVDVNVHPTKHEVHFLHEDTIIERVQSMLEKTL 300 (512)
Q Consensus 267 ~~iDVNvhP~K~eV~f~~~~~I~~~I~~~l~~~l 300 (512)
+.+||||||+|++|+|.+|+.|++.|++.++++|
T Consensus 89 ~~~DvNvhP~K~eV~f~~~~~i~~~i~~~v~~~l 122 (122)
T cd00782 89 ELVDVNVHPTKREVRFSDEEEVLELIREALRSAL 122 (122)
T ss_pred hheeeeeCCCCCEEEecCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999998875
No 19
>cd03484 MutL_Trans_hPMS_2_like MutL_Trans_hPMS2_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM2 (hPSM2). hPSM2 belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to yeast PMS1. The yeast MLH1-PMS1 and the human MLH1-PMS2 heterodimers play a role in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Cells lacking hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hPMS2 causes predisposition to HPNCC and Turcot syndrome.
Probab=99.89 E-value=7.1e-23 Score=185.23 Aligned_cols=113 Identities=23% Similarity=0.398 Sum_probs=97.0
Q ss_pred hHHHHH----HHHhhcceEeeecCC---------------cccEEEEEEEecC--ccc-CCCceEEEEEeCc------hH
Q psy1955 188 CLLEIA----SLNNLELLSVEGTDD---------------AFQLKVTGWITNV--NFS-TKKMTFLLFINNP------IK 239 (512)
Q Consensus 188 ~~~~i~----~~~~~~l~~i~~~~~---------------~~~~~v~G~is~p--~~~-~~r~~q~lfVNgR------i~ 239 (512)
+.++|. ..+++.|++++...+ ...+++.||+|.| ... .++..||+||||| |.
T Consensus 2 ~~~~i~~v~G~~~~~~li~v~~~~~~~~~~~~~~~~~~~~~~~~~i~G~is~p~~~~~r~~~~~q~~fVN~R~V~~~~l~ 81 (142)
T cd03484 2 IKDNIINVFGGKVIKGLIPINLELDVNPTKEELDSDEDLADSEVKITGYISKPSHGCGRSSSDRQFFYINGRPVDLKKVA 81 (142)
T ss_pred HHHHHHHHhCHHHHhcccceeccccccccccccccccccCCCcEEEEEEECCCcccCCCCCCCcEEEEECCeecCCHHHH
Confidence 345554 666778888885441 1269999999999 443 3567899999999 99
Q ss_pred HHHHHHHhhcCCCCCCeEEEEEeeCCCceEEEeecCCCcceeecchhhHHHHHHHHHHHHhc
Q psy1955 240 RMIEQVYSIYLPKGSFPFVYLSLCMDPKNVDVNVHPTKHEVHFLHEDTIIERVQSMLEKTLL 301 (512)
Q Consensus 240 k~I~~~Y~~~l~~~~~P~~~L~i~ipp~~iDVNvhP~K~eV~f~~~~~I~~~I~~~l~~~l~ 301 (512)
++|.++|+.++ +++||+++|+|+|||+.|||||||+|+||+|.+++.|++.|+++|++.|.
T Consensus 82 ~aI~~~y~~~~-~~~~P~~vL~i~vp~~~vDvNVhP~K~eV~f~~e~~i~~~i~~~v~~~~~ 142 (142)
T cd03484 82 KLINEVYKSFN-SRQYPFFILNISLPTSLYDVNVTPDKRTVLLHDEDRLIDTLKTSLSELFE 142 (142)
T ss_pred HHHHHHHHHhc-CcCCcEEEEEEEeCCcceeeeeCCccCEEEEcChHHHHHHHHHHHHHHhC
Confidence 99999999998 78999999999999999999999999999999999999999999999873
No 20
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=99.85 E-value=1.2e-20 Score=205.19 Aligned_cols=219 Identities=19% Similarity=0.198 Sum_probs=156.4
Q ss_pred cCHHHHHHHHHHccccCCCC-----eEEEEEEeCC--eeeEEEEeCCCCCCHHhHHHHHhh-cccCCCCCcccccccccc
Q psy1955 25 QRPANALKELLENSLDAKST-----SIQVTVKQGG--LKLLQIQDNGTGIRKEDMDIVCER-FTTSKLTQFEDLNSISTF 96 (512)
Q Consensus 25 ~~~~~~v~eLv~Ns~dA~a~-----~i~i~~~~~~--~~~i~v~DnG~Gi~~~~~~~~~~~-~~tsK~~~~~d~~~~~~~ 96 (512)
.++.++++|||+||+||+++ .|.|.+...+ ...|.|.|||+||++++++.+|.+ |+|||+... ..+.
T Consensus 35 r~L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~-----~qS~ 109 (659)
T PRK14867 35 RSMTTIIHELVTNSLDACEEAEILPDIKVEIEKLGSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRL-----IQSR 109 (659)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCcEEEEEEEeeCeeCCHHHHhhhhccccccCcccce-----eccC
Confidence 45669999999999999886 6888886433 456999999999999999999999 777898653 4789
Q ss_pred CCcchhhhhhhccceE------EEEEecCCCCc---eEEEEee-------------------------ehhhhhhhhccc
Q psy1955 97 GFRGEALASISHVAHL------TIITKTKTSPC---AYRWCTY-------------------------LADLMALALMEM 142 (512)
Q Consensus 97 G~rGeaL~si~~~s~l------~i~S~~~~~~~---~~~~~~~-------------------------~~dl~~~~F~n~ 142 (512)
|++|+||+++..++++ +|.|++.++.. ++.+ .. .+|| |||
T Consensus 110 G~rG~GLa~a~~vsql~~G~pI~I~S~~g~G~~f~i~L~i-~i~~n~G~I~~~~~~~~~~~GT~Ie~~V~dL----Fyn- 183 (659)
T PRK14867 110 GQQGIGAAGVLLFSQITTGKPLKITTSTGDGKIHEMEIKM-SVEKNEGDIVSHKVREGFWRGTRVEGEFKEV----TYN- 183 (659)
T ss_pred CCCcccHHHHHHHHHHhcCCcEEEEEEcCCCEEEEEEEEE-EecccCCeecccccCCCCCCCcEEEEEEeec----eec-
Confidence 9999999988877754 68888754431 2222 11 0356 777
Q ss_pred chhhhHhhhcCCcHHHHHhhhhhcccCeEEEecCC--c-----ceeecCccChHHHHH----HHHhhcceEeeecCCccc
Q psy1955 143 SQYLQRDKEQIGDKEEKQWYRTVEHTLVPLMKSQY--Q-----PSEKIVERACLLEIA----SLNNLELLSVEGTDDAFQ 211 (512)
Q Consensus 143 Pv~~~Rrk~lks~~~E~~ki~~lv~p~Vs~~~~~~--~-----~~~~t~~~s~~~~i~----~~~~~~l~~i~~~~~~~~ 211 (512)
|++ .+ -.++-+-..++||++.|..... . ....++ ....+++. .. ...|+++....+ .
T Consensus 184 -----R~E-~~--i~e~l~r~ALanP~i~f~l~~~~~~~~~~r~~~~lp-~~~~e~~ph~~G~~-~~~Li~i~~~~~--~ 251 (659)
T PRK14867 184 -----RRE-QG--PFEYLRRISLSTPHAKITLKDPEETVVFDRTVDEIP-EKPEEMKPHPYGLT-TDELLYIARKTD--S 251 (659)
T ss_pred -----hhh-HH--HHHHHHHHHHhCCCcEEEEEeCCccccCCcceeecC-cCHHHHhhccCccc-hhhceehhccCC--c
Confidence 331 10 1222222222299997765332 1 222232 34555555 33 678888886555 6
Q ss_pred EEEEEEEecCcccC-CCceEEEEEeCc-hHHHHHHHHhhcCCCCCCeEEEEEeeCCCce
Q psy1955 212 LKVTGWITNVNFST-KKMTFLLFINNP-IKRMIEQVYSIYLPKGSFPFVYLSLCMDPKN 268 (512)
Q Consensus 212 ~~v~G~is~p~~~~-~r~~q~lfVNgR-i~k~I~~~Y~~~l~~~~~P~~~L~i~ipp~~ 268 (512)
+++.||+ .|.++. ++..|+ +|-.+ |.++|.++|+.++|.++||+++|+|++||-.
T Consensus 252 ~~v~gfl-~p~~sR~~~~~~~-~V~~~~l~~ai~~ay~~~l~~~~~P~~~L~l~i~~~~ 308 (659)
T PRK14867 252 SKVSSML-NSELSRVTTKRIK-ELEEYVLRDLLLENYRDSVFWDTVVSCYLNFDFTKYF 308 (659)
T ss_pred eEEEEEe-cchhccCCCCcEE-EEccHHHHHHHHHHHhhcccCCCcceEEEEEEeCccc
Confidence 8999998 888774 556666 66666 9999999999999999999999999999874
No 21
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.80 E-value=2.3e-19 Score=195.40 Aligned_cols=209 Identities=20% Similarity=0.280 Sum_probs=158.8
Q ss_pred ecCCCcceeecch-hhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCcee-eEeecCCCCCCCcchhhhhhhccc
Q psy1955 273 VHPTKHEVHFLHE-DTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGGLK-LLQIQDNGTGIRKEDMDIVCERFT 350 (512)
Q Consensus 273 vhP~K~eV~f~~~-~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~~~-~i~v~Dng~gi~~~~l~~~~~~~~ 350 (512)
+++.|....|.+. ..+...++++|+|+++++...... + .|.|.+...+.. .+.|.|||+||+++++.+++.+|+
T Consensus 31 F~kN~~~lgfD~d~r~L~tVLkNLIeNALDAs~~~gil--p--~I~V~Ie~~g~~v~I~VeDNG~GIp~EdLp~IFerf~ 106 (795)
T PRK14868 31 FEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGIL--P--DIYVEIEEVGDYYRLVVEDNGPGITKEQIPKVFGKLL 106 (795)
T ss_pred cccCcceeeccCCHHHHHHHHHHHHHHHHHhCcccCCC--c--eEEEEEEECCCEEEEEEEEcCCCCCHHHHHHHhhhhc
Confidence 4456666677764 578899999999999987543210 0 144445444433 689999999999999999999987
Q ss_pred -cCCccccccccccccccccchhhhhHhhhcc------eEEEEecCCCCCce--EEEEecCc---cc--ccccccCCCCC
Q psy1955 351 -TSKLTQFEDLNSISTFGFRGEALASISHVAH------LTIITKTKTSPCAY--RASYIDSK---LK--DPIKPCAGNQG 416 (512)
Q Consensus 351 -TSKi~~~~dl~~~~t~GfRGeALaSi~~~s~------l~I~T~~~~~~~~~--~~~~~~~~---~~--~~~~~~~~~~G 416 (512)
|||+.+.. .+.||+|++|+++...++ ++|+|++.++..++ ++.+..++ .+ ....+..+++|
T Consensus 107 ~tSKf~~~~-----~srG~rG~GLglai~~sqlt~GgpI~I~S~~~~~~~g~~~~L~Id~gkNep~I~~~~~~~~~~~~G 181 (795)
T PRK14868 107 YGSRFHARE-----QSRGQQGIGISAAVLYSQLTSGKPAKITSRTQGSEEAQYFELIIDTDTNEPEISVEETTTWDRPHG 181 (795)
T ss_pred ccccccccc-----cCCCCCceehHHHHHHHHHcCCCcEEEEeCCCCCCceeEEEEEEecCCCccceecceecccCCCCc
Confidence 89988643 578999999999999997 58999998776664 55555553 21 22345678899
Q ss_pred ceEEehhhcccchhhhcccCCChHHHHHHHHHHHHHhhcCCCeEEEEEECCccceeeecCCCCCHHHHHHhh----cChh
Q psy1955 417 TQIIAEDLFYNIPTRRKALKQPSEEYNKIADVVSRYAVHNPHVGFTLKKQNENLADIRTNVNSSHSEVIGNI----YGNN 492 (512)
Q Consensus 417 TtV~V~~lF~n~PvRrk~~~~~~~e~~~i~~~l~~yaL~~p~v~f~l~~~~~~~~~~~~~~~~s~~~~i~~i----fG~~ 492 (512)
|+|+|+ ||+|+|+|+| |.++|+++||+||+++|.|.+++ ..+.+. ..+..+.+....+ +|.+
T Consensus 182 T~IeV~-Lf~N~pAR~k-----------I~eyl~r~Al~nP~a~f~l~~~~-~~~~~~-r~t~~lp~~p~eIkPHP~Gve 247 (795)
T PRK14868 182 TRIELE-MEANMRARQQ-----------LHDYIKHTAVVNPHARIELREPD-ESLKFE-RATDQLPAETEEIRPHPHGVE 247 (795)
T ss_pred eEEEEE-EEccCchhhh-----------HHHHHHHHHhhCCCeEEEEEECC-EEEEec-ccccccccCchhccCCCCCcC
Confidence 999999 9999999876 88999999999999999999983 334442 3345688888888 9998
Q ss_pred hhccceeeecccc
Q psy1955 493 ISRRVRRFSSASQ 505 (512)
Q Consensus 493 ~~~~l~~~~~~~~ 505 (512)
+ ..|..+...++
T Consensus 248 ~-~~L~~m~~~t~ 259 (795)
T PRK14868 248 L-GTLLKMLEATD 259 (795)
T ss_pred H-HHHHHHHhccC
Confidence 8 77777765444
No 22
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=99.75 E-value=9.3e-18 Score=182.73 Aligned_cols=194 Identities=20% Similarity=0.290 Sum_probs=143.0
Q ss_pred hHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCcee--eEeecCCCCCCCcchhhhhhhc-cccCCcccccccccc
Q psy1955 287 TIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGGLK--LLQIQDNGTGIRKEDMDIVCER-FTTSKLTQFEDLNSI 363 (512)
Q Consensus 287 ~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~~~--~i~v~Dng~gi~~~~l~~~~~~-~~TSKi~~~~dl~~~ 363 (512)
.+...++++|+|++++...... .+. |.|.....+.. .+.|.|||+||+++++.++..+ |+|||++++ .
T Consensus 36 ~L~~VVkELVeNAIDA~~~~g~--~p~--I~V~I~~~g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~-----~ 106 (659)
T PRK14867 36 SMTTIIHELVTNSLDACEEAEI--LPD--IKVEIEKLGSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRL-----I 106 (659)
T ss_pred HHHHHHHHHHHHHHHHhhccCC--Cce--EEEEEEECCCcEEEEEEEeeCeeCCHHHHhhhhccccccCcccce-----e
Confidence 3458899999999988654221 011 34444433333 5899999999999999999998 999999864 4
Q ss_pred ccccccchhhhhHhhhcce------EEEEecCCCC---CceEEEE--ecCcccccccccCCCCCceEE--ehhhcccchh
Q psy1955 364 STFGFRGEALASISHVAHL------TIITKTKTSP---CAYRASY--IDSKLKDPIKPCAGNQGTQII--AEDLFYNIPT 430 (512)
Q Consensus 364 ~t~GfRGeALaSi~~~s~l------~I~T~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~GTtV~--V~~lF~n~Pv 430 (512)
.+.||||++|+++..++++ .+.|++.+.. .+..+.+ .+|++.....+.++.+||+|+ |++||||
T Consensus 107 qS~G~rG~GLa~a~~vsql~~G~pI~I~S~~g~G~~f~i~L~i~i~~n~G~I~~~~~~~~~~~GT~Ie~~V~dLFyn--- 183 (659)
T PRK14867 107 QSRGQQGIGAAGVLLFSQITTGKPLKITTSTGDGKIHEMEIKMSVEKNEGDIVSHKVREGFWRGTRVEGEFKEVTYN--- 183 (659)
T ss_pred ccCCCCcccHHHHHHHHHHhcCCcEEEEEEcCCCEEEEEEEEEEecccCCeecccccCCCCCCCcEEEEEEeeceec---
Confidence 7899999999999988876 6888875543 2222333 334443332456678999999 9999999
Q ss_pred hhcccCCChHHHHHHHHHHHHHhhcCCCeEEEEEECCccce----eeecCCCCCHHHHHHhhcChhhhccceeeeccc
Q psy1955 431 RRKALKQPSEEYNKIADVVSRYAVHNPHVGFTLKKQNENLA----DIRTNVNSSHSEVIGNIYGNNISRRVRRFSSAS 504 (512)
Q Consensus 431 Rrk~~~~~~~e~~~i~~~l~~yaL~~p~v~f~l~~~~~~~~----~~~~~~~~s~~~~i~~ifG~~~~~~l~~~~~~~ 504 (512)
|+ |.. +.+.|+++||+||+++|+|.++++... .+.. .....+++.++||.. ...|+++...+
T Consensus 184 R~--------E~~-i~e~l~r~ALanP~i~f~l~~~~~~~~~~r~~~~l--p~~~~e~~ph~~G~~-~~~Li~i~~~~ 249 (659)
T PRK14867 184 RR--------EQG-PFEYLRRISLSTPHAKITLKDPEETVVFDRTVDEI--PEKPEEMKPHPYGLT-TDELLYIARKT 249 (659)
T ss_pred hh--------hHH-HHHHHHHHHHhCCCcEEEEEeCCccccCCcceeec--CcCHHHHhhccCccc-hhhceehhccC
Confidence 43 444 899999999999999999999854311 1111 236899999999999 88999988554
No 23
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=99.70 E-value=1.4e-16 Score=175.14 Aligned_cols=226 Identities=15% Similarity=0.204 Sum_probs=147.9
Q ss_pred HHHHHHHHHccccCC----CCeEEEEEEeCCeeeEEEEeCCCCCCHHhH--------HHHH-hhcccCCCCCcccccccc
Q psy1955 28 ANALKELLENSLDAK----STSIQVTVKQGGLKLLQIQDNGTGIRKEDM--------DIVC-ERFTTSKLTQFEDLNSIS 94 (512)
Q Consensus 28 ~~~v~eLv~Ns~dA~----a~~i~i~~~~~~~~~i~v~DnG~Gi~~~~~--------~~~~-~~~~tsK~~~~~d~~~~~ 94 (512)
..+|+|||+||+||+ |+.|.|.++.+| .|+|.|||.|||.+.. +.++ ..|+++|+ +|.....
T Consensus 3 ~~~v~ElvdNAiD~~~~g~at~I~V~i~~~g--~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kf---d~~~~k~ 77 (594)
T smart00433 3 HHLVDEIVDNAADEALAGYMDTIKVTIDKDN--SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKF---DDDAYKV 77 (594)
T ss_pred eEEEeeehhcccchhccCCCCEEEEEEeCCC--eEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCC---CCCCccc
Confidence 457899999999998 999999998776 6999999999995432 2222 23444453 3444456
Q ss_pred ccCCcchhhhhhhccc-eEEEEEecCCCCceEEEEeeeh------hh----------hhhhhcccchhhhHhhhcCCcHH
Q psy1955 95 TFGFRGEALASISHVA-HLTIITKTKTSPCAYRWCTYLA------DL----------MALALMEMSQYLQRDKEQIGDKE 157 (512)
Q Consensus 95 ~~G~rGeaL~si~~~s-~l~i~S~~~~~~~~~~~~~~~~------dl----------~~~~F~n~Pv~~~Rrk~lks~~~ 157 (512)
+.||||+||++++++| .++|.|+..+. .|+. .|.. .+ ....| .|. |++|.+....
T Consensus 78 s~G~~G~Gls~vnalS~~l~v~~~~~g~--~~~~-~~~~~G~~~~~~~~~~~~~~~GT~V~F--~Pd---~~~F~~~~~~ 149 (594)
T smart00433 78 SGGLHGVGASVVNALSTEFEVEVARDGK--EYKQ-SFSNNGKPLSEPKIIGDTKKDGTKVTF--KPD---LEIFGMTTDD 149 (594)
T ss_pred cCCcccchHHHHHHhcCceEEEEEeCCc--EEEE-EEeCCCeECccceecCCCCCCCcEEEE--EEC---HHHhCCcccc
Confidence 8999999999999997 69999998643 3655 5531 11 11235 688 9999876677
Q ss_pred HHHhhhhhc------ccCeEEEecCCc-ce---eecCccChHHHHHHHH------hhcceEeeecCCcccEEEEEEEecC
Q psy1955 158 EKQWYRTVE------HTLVPLMKSQYQ-PS---EKIVERACLLEIASLN------NLELLSVEGTDDAFQLKVTGWITNV 221 (512)
Q Consensus 158 E~~ki~~lv------~p~Vs~~~~~~~-~~---~~t~~~s~~~~i~~~~------~~~l~~i~~~~~~~~~~v~G~is~p 221 (512)
++..|.+.+ +|+|+|...++. .. +.. .+++.+-+.... ....+.+..+.+ ...++..+.-+
T Consensus 150 ~~~~i~~rl~~~A~l~pgl~i~l~der~~~~~~f~~-~~Gl~~yv~~~~~~~~~~~~~~i~~~~~~~--~~~veval~~~ 226 (594)
T smart00433 150 DFELLKRRLRELAFLNKGVKITLNDERSDEEETFLF-EGGIKDYVELLNKNKELLSPEPTYIEGEKD--NIRVEVAFQYT 226 (594)
T ss_pred hHHHHHHHHHHHHhcCCCcEEEEeccCCCcceEEEC-CCCHHHHHHHHhCCCCcccCCCeEEEEEeC--CcEEEEEEEcc
Confidence 888887777 999988887653 11 222 355555554111 111122322222 35666665543
Q ss_pred cccCCCceEEEEEeCc---------------hHHHHHHHHhhcCC-C---------CCCeEEEEEeeCCCceEEE
Q psy1955 222 NFSTKKMTFLLFINNP---------------IKRMIEQVYSIYLP-K---------GSFPFVYLSLCMDPKNVDV 271 (512)
Q Consensus 222 ~~~~~r~~q~lfVNgR---------------i~k~I~~~Y~~~l~-~---------~~~P~~~L~i~ipp~~iDV 271 (512)
. .....++.|||+. |.++|++.++.... + ....++++++.+|.-.+|=
T Consensus 227 ~--~~~~~~~SFvN~I~T~~GGTHv~g~~~al~~~i~~~~~~~~~~k~~~i~~~diregl~~vIsvki~~P~Feg 299 (594)
T smart00433 227 D--GYSENIVSFVNNIATTEGGTHENGFKDALTRVINEYAKKKKKLKEKNIKGEDVREGLTAFISVKIPEPQFEG 299 (594)
T ss_pred C--CCCcEEEEEECCccCCCCCcHHHHHHHHHHHHHHHHHHHhCccccCCCChhhHhhCeEEEEEEEEchheecc
Confidence 2 1235689999999 55555555544211 1 1467999999998777763
No 24
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=99.70 E-value=2.2e-16 Score=173.83 Aligned_cols=157 Identities=17% Similarity=0.201 Sum_probs=121.7
Q ss_pred ccccChHHHHHHhcCCcc--cCHHHHHHHHHHcccc---C-CCCeEEEEEEeCCeeeEEEEeCCCCCCHHh--------H
Q psy1955 7 IKKLDETVVNRIAAGEVI--QRPANALKELLENSLD---A-KSTSIQVTVKQGGLKLLQIQDNGTGIRKED--------M 72 (512)
Q Consensus 7 i~~l~~~~~~~i~s~~~i--~~~~~~v~eLv~Ns~d---A-~a~~i~i~~~~~~~~~i~v~DnG~Gi~~~~--------~ 72 (512)
|+.|..-=-=+.+-|..| ++|.++|+|||+||+| | +|+.|.|.++.++ .|+|.|||.|||.++ +
T Consensus 9 i~~L~gle~VRkRPgMYigs~~~~~lv~ElvdNsiDE~~ag~a~~I~V~i~~d~--~I~V~DnGrGIp~~~h~~~g~~~~ 86 (625)
T TIGR01055 9 IEVLDGLEPVRKRPGMYTDTTRPNHLVQEVIDNSVDEALAGFASIIMVILHQDQ--SIEVFDNGRGMPVDIHPKEGVSAV 86 (625)
T ss_pred ceeecccHHhhcCCCCeeCCCCcceeehhhhhcccchhhcCCCCEEEEEEeCCC--eEEEEecCCccCcccccccCCcHH
Confidence 555554333345567777 5689999999999999 9 6999999998663 599999999999998 8
Q ss_pred HHHH-hhcccCCCCCccccccccccCCcchhhhhhhccce-EEEEEecCCCCceEEEEeeehh-----h-----------
Q psy1955 73 DIVC-ERFTTSKLTQFEDLNSISTFGFRGEALASISHVAH-LTIITKTKTSPCAYRWCTYLAD-----L----------- 134 (512)
Q Consensus 73 ~~~~-~~~~tsK~~~~~d~~~~~~~G~rGeaL~si~~~s~-l~i~S~~~~~~~~~~~~~~~~d-----l----------- 134 (512)
+.++ .+|+|||+.+. +.+ .+.||||+||++++++|+ ++|.|+..+.. |+. .|... +
T Consensus 87 e~v~t~lhagsK~~~~--~~~-~SgG~~GvGls~vnalS~~l~v~~~r~g~~--~~~-~~~~G~~~~~~~~i~~~~~~~~ 160 (625)
T TIGR01055 87 EVILTTLHAGGKFSNK--NYH-FSGGLHGVGISVVNALSKRVKIKVYRQGKL--YSI-AFENGAKVTDLISAGTCGKRLT 160 (625)
T ss_pred HHhhhcccccCCCCCC--cce-ecCCCcchhHHHHHHhcCeEEEEEEECCeE--EEE-EEECCeEccccccccccCCCCC
Confidence 8887 99999999753 455 799999999999999998 99999975533 665 55511 1
Q ss_pred -hhhhhcccchhhhHhhhcCCcHHHHHhhhhhc------ccCeEEEecCC
Q psy1955 135 -MALALMEMSQYLQRDKEQIGDKEEKQWYRTVE------HTLVPLMKSQY 177 (512)
Q Consensus 135 -~~~~F~n~Pv~~~Rrk~lks~~~E~~ki~~lv------~p~Vs~~~~~~ 177 (512)
...-| .|. | ++|++...++..|.+.+ ||+|.|...++
T Consensus 161 GT~V~F--~PD---~-~~F~~~~~e~~~i~~~l~~lA~lnpgi~~~l~de 204 (625)
T TIGR01055 161 GTSVHF--TPD---P-EIFDSLHFSVSRLYHILRAKAVLCRGVEIEFEDE 204 (625)
T ss_pred CeEEEE--EEC---H-HHCCCCccCHHHHHHHHHHHHhhCCCcEEEEeec
Confidence 01123 666 7 77887777777777776 99999888765
No 25
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.69 E-value=2.4e-16 Score=167.20 Aligned_cols=169 Identities=20% Similarity=0.331 Sum_probs=129.2
Q ss_pred eecc-hhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCce--eeEeecCCCCCCCcchhhhhhhc-cccCCccc
Q psy1955 281 HFLH-EDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGGL--KLLQIQDNGTGIRKEDMDIVCER-FTTSKLTQ 356 (512)
Q Consensus 281 ~f~~-~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~~--~~i~v~Dng~gi~~~~l~~~~~~-~~TSKi~~ 356 (512)
-|.+ ...+...++++|+|++++...... .+. |.|.....+. -.+.|.|||+||+++++..+..+ |+|||+.+
T Consensus 21 Gf~~~~~~L~~VlkELVeNAIDA~~~~g~--~p~--I~V~i~~~g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~ 96 (488)
T TIGR01052 21 GYSGKIRSLTTVIHELVTNSLDACEEAGI--LPD--IKVEIEKIGKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHR 96 (488)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhhccCC--Cce--EEEEEEECCCceEEEEEEECCCCCCHHHHHhhhhhccccCcccc
Confidence 3444 456778899999999998654221 011 4454544333 26899999999999999998877 89999875
Q ss_pred cccccccccccccchhhhhHhhhcc------eEEEEecCCCCCceEEEEe------cCcccccccccCCC--CCceEEeh
Q psy1955 357 FEDLNSISTFGFRGEALASISHVAH------LTIITKTKTSPCAYRASYI------DSKLKDPIKPCAGN--QGTQIIAE 422 (512)
Q Consensus 357 ~~dl~~~~t~GfRGeALaSi~~~s~------l~I~T~~~~~~~~~~~~~~------~~~~~~~~~~~~~~--~GTtV~V~ 422 (512)
...+.|++|++|++...+|+ ++|+|++.++..++.+.+. +|.... ..+...+ +||+|+|+
T Consensus 97 -----~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~~g~~~~~~~~~~id~~~n~G~i~~-~~~~~~~~~~GT~V~v~ 170 (488)
T TIGR01052 97 -----IIQSRGQQGIGISGAVLYSQMTTGKPVKVISSTGGEIYVYKMKLKIDVQKNEGEIVE-KGEWNKPGWRGTRIELE 170 (488)
T ss_pred -----ccccCCCccEehhHHHHHHHHcCCceEEEEEecCCceEEEEEEEEecccccCCeecc-eeecCCCCCCceEEEEE
Confidence 24688999999999999997 8999999888778888774 344332 2234444 59999999
Q ss_pred hhcccchhhhcccCCChHHHHHHHHHHHHHhhcCCCeEEEEEECCcc
Q psy1955 423 DLFYNIPTRRKALKQPSEEYNKIADVVSRYAVHNPHVGFTLKKQNEN 469 (512)
Q Consensus 423 ~lF~n~PvRrk~~~~~~~e~~~i~~~l~~yaL~~p~v~f~l~~~~~~ 469 (512)
|++.|+|++. .+|.++|+++|++||+++|.|.+.+..
T Consensus 171 --f~~~~~r~~k--------~~i~e~l~~~Al~nP~~~i~l~~~~~~ 207 (488)
T TIGR01052 171 --FKGVSYRRSK--------QGVYEYLRRTAVANPHAKIVLVDPDGE 207 (488)
T ss_pred --ECCceeeccH--------HHHHHHHHHHHhhCCCeEEEEEeCCCC
Confidence 9999999421 579999999999999999999987654
No 26
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.66 E-value=1.7e-16 Score=173.08 Aligned_cols=182 Identities=21% Similarity=0.237 Sum_probs=125.9
Q ss_pred cCHHHHHHHHHHccccCCCC-----eEEEEEEeCC-eeeEEEEeCCCCCCHHhHHHHHhhcc-cCCCCCccccccccccC
Q psy1955 25 QRPANALKELLENSLDAKST-----SIQVTVKQGG-LKLLQIQDNGTGIRKEDMDIVCERFT-TSKLTQFEDLNSISTFG 97 (512)
Q Consensus 25 ~~~~~~v~eLv~Ns~dA~a~-----~i~i~~~~~~-~~~i~v~DnG~Gi~~~~~~~~~~~~~-tsK~~~~~d~~~~~~~G 97 (512)
..+.++|+|||+||+||+++ .|.|.+..++ ...|.|.|||+||++++++.+|++|+ |||+...+ .+.|
T Consensus 45 r~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~-----~srG 119 (795)
T PRK14868 45 RGLVTAVKEAVDNALDATEEAGILPDIYVEIEEVGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHARE-----QSRG 119 (795)
T ss_pred HHHHHHHHHHHHHHHHhCcccCCCceEEEEEEECCCEEEEEEEEcCCCCCHHHHHHHhhhhcccccccccc-----cCCC
Confidence 35889999999999999876 5888886544 45799999999999999999999987 88987543 6789
Q ss_pred Ccchhhhhhhccce------EEEEEecCCCCceE--EEEeee--h---hh----------------hhhhhcccchhhhH
Q psy1955 98 FRGEALASISHVAH------LTIITKTKTSPCAY--RWCTYL--A---DL----------------MALALMEMSQYLQR 148 (512)
Q Consensus 98 ~rGeaL~si~~~s~------l~i~S~~~~~~~~~--~~~~~~--~---dl----------------~~~~F~n~Pv~~~R 148 (512)
++|+||+++...++ ++|.|++.++..|+ ++ ... . .+ .-.+|+|+|+ |
T Consensus 120 ~rG~GLglai~~sqlt~GgpI~I~S~~~~~~~g~~~~L-~Id~gkNep~I~~~~~~~~~~~~GT~IeV~Lf~N~pA---R 195 (795)
T PRK14868 120 QQGIGISAAVLYSQLTSGKPAKITSRTQGSEEAQYFEL-IIDTDTNEPEISVEETTTWDRPHGTRIELEMEANMRA---R 195 (795)
T ss_pred CCceehHHHHHHHHHcCCCcEEEEeCCCCCCceeEEEE-EEecCCCccceecceecccCCCCceEEEEEEEccCch---h
Confidence 99999999888886 69999998777775 33 222 0 00 0014999999 8
Q ss_pred hhhcCCcHHHHHhhhhhcccCeEEEecCCcceeecC--ccChHHHHH--------HHHhhcceEeeecCCcccEEEEEEE
Q psy1955 149 DKEQIGDKEEKQWYRTVEHTLVPLMKSQYQPSEKIV--ERACLLEIA--------SLNNLELLSVEGTDDAFQLKVTGWI 218 (512)
Q Consensus 149 rk~lks~~~E~~ki~~lv~p~Vs~~~~~~~~~~~t~--~~s~~~~i~--------~~~~~~l~~i~~~~~~~~~~v~G~i 218 (512)
+| -.++-+-..++||++.|........+.+. ...+.+.+. -.+ ..|+++....+ .+++.||+
T Consensus 196 ~k-----I~eyl~r~Al~nP~a~f~l~~~~~~~~~~r~t~~lp~~p~eIkPHP~Gve~-~~L~~m~~~t~--~~~l~gFL 267 (795)
T PRK14868 196 QQ-----LHDYIKHTAVVNPHARIELREPDESLKFERATDQLPAETEEIRPHPHGVEL-GTLLKMLEATD--SYSVSGFL 267 (795)
T ss_pred hh-----HHHHHHHHHhhCCCeEEEEEECCEEEEecccccccccCchhccCCCCCcCH-HHHHHHHhccC--CcEeHHhh
Confidence 87 22333333344999977653333334442 333444333 122 45555554444 58999999
Q ss_pred ecCccc
Q psy1955 219 TNVNFS 224 (512)
Q Consensus 219 s~p~~~ 224 (512)
.|.++
T Consensus 268 -~~efs 272 (795)
T PRK14868 268 -QEEFT 272 (795)
T ss_pred -hhhhc
Confidence 77665
No 27
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=99.64 E-value=8.2e-16 Score=169.36 Aligned_cols=156 Identities=14% Similarity=0.236 Sum_probs=122.2
Q ss_pred HHHHHHHHHHhc---CCCCcceeecceeeEEEEEccCceeeEeecCCCCCCCcch--------hhhh-hhccccCCcccc
Q psy1955 290 ERVQSMLEKTLL---GSNTSRVFYTQSTSIQVTVKQGGLKLLQIQDNGTGIRKED--------MDIV-CERFTTSKLTQF 357 (512)
Q Consensus 290 ~~I~~~l~~~l~---~~~~~r~~~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~--------l~~~-~~~~~TSKi~~~ 357 (512)
..|.+.|+|+++ ++-.++ |.|.+... ..++|.|||+||+.++ +..+ +.+|+|||+++.
T Consensus 33 ~lv~ElvdNsiDE~~ag~a~~--------I~V~i~~d--~~I~V~DnGrGIp~~~h~~~g~~~~e~v~t~lhagsK~~~~ 102 (625)
T TIGR01055 33 HLVQEVIDNSVDEALAGFASI--------IMVILHQD--QSIEVFDNGRGMPVDIHPKEGVSAVEVILTTLHAGGKFSNK 102 (625)
T ss_pred eeehhhhhcccchhhcCCCCE--------EEEEEeCC--CeEEEEecCCccCcccccccCCcHHHHhhhcccccCCCCCC
Confidence 356666666666 422222 66666544 4799999999999988 6665 489999999864
Q ss_pred ccccccccccccchhhhhHhhhcc-eEEEEecCCCCCceEEEEecCcccccc---ccc-CCCCCceEEehhhcccchhhh
Q psy1955 358 EDLNSISTFGFRGEALASISHVAH-LTIITKTKTSPCAYRASYIDSKLKDPI---KPC-AGNQGTQIIAEDLFYNIPTRR 432 (512)
Q Consensus 358 ~dl~~~~t~GfRGeALaSi~~~s~-l~I~T~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~GTtV~V~~lF~n~PvRr 432 (512)
+.. .|.||||++|++++++|+ ++|.|++.+.. |...|.+|....+. .++ ..+.||+|++ +|.|
T Consensus 103 --~~~-~SgG~~GvGls~vnalS~~l~v~~~r~g~~--~~~~~~~G~~~~~~~~i~~~~~~~~GT~V~F------~PD~- 170 (625)
T TIGR01055 103 --NYH-FSGGLHGVGISVVNALSKRVKIKVYRQGKL--YSIAFENGAKVTDLISAGTCGKRLTGTSVHF------TPDP- 170 (625)
T ss_pred --cce-ecCCCcchhHHHHHHhcCeEEEEEEECCeE--EEEEEECCeEccccccccccCCCCCCeEEEE------EECH-
Confidence 455 799999999999999998 99999987654 88888888653222 234 4569999998 9999
Q ss_pred cccCCChHHHHHHHHHHHHHhhcCCCeEEEEEECC
Q psy1955 433 KALKQPSEEYNKIADVVSRYAVHNPHVGFTLKKQN 467 (512)
Q Consensus 433 k~~~~~~~e~~~i~~~l~~yaL~~p~v~f~l~~~~ 467 (512)
+.|+...-++..|.+.++++|++||.|+|+|.+..
T Consensus 171 ~~F~~~~~e~~~i~~~l~~lA~lnpgi~~~l~der 205 (625)
T TIGR01055 171 EIFDSLHFSVSRLYHILRAKAVLCRGVEIEFEDEV 205 (625)
T ss_pred HHCCCCccCHHHHHHHHHHHHhhCCCcEEEEeecC
Confidence 77777777889999999999999999999998753
No 28
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=99.64 E-value=8.3e-16 Score=169.88 Aligned_cols=159 Identities=18% Similarity=0.317 Sum_probs=121.2
Q ss_pred hhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCceeeEeecCCCCCCCcchhhhhhhccccCCcccccccccc--
Q psy1955 286 DTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSI-- 363 (512)
Q Consensus 286 ~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~~~~~~~TSKi~~~~dl~~~-- 363 (512)
.-+...+.+.|.|++++...- +. ..|.|.+...| .++|.|||+||+.+ +|.++|+...+++...
T Consensus 36 ~gl~~~v~ElvdNaiDe~~ag--~a---~~I~V~i~~~g--~I~V~DnG~GIp~~-------~h~~~ki~~~e~i~~~lh 101 (638)
T PRK05644 36 RGLHHLVYEIVDNSIDEALAG--YC---DHIEVTINEDG--SITVTDNGRGIPVD-------IHPKTGKPAVEVVLTVLH 101 (638)
T ss_pred hhHHhhhHHhhhcccccccCC--CC---CEEEEEEeCCC--cEEEEEeCccccCC-------ccCCCCCCchHHheeeec
Confidence 467788999999999842111 00 11667776655 79999999999886 4445555544443322
Q ss_pred -----------ccccccchhhhhHhhhcc-eEEEEecCCCCCceEEEEecCcccccccccC--CCCCceEEehhhcccch
Q psy1955 364 -----------STFGFRGEALASISHVAH-LTIITKTKTSPCAYRASYIDSKLKDPIKPCA--GNQGTQIIAEDLFYNIP 429 (512)
Q Consensus 364 -----------~t~GfRGeALaSi~~~s~-l~I~T~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~GTtV~V~~lF~n~P 429 (512)
-|.||||++|+|++.+|+ ++|+|+..+. +|...|.+|....+..+.. .+.||+|+ | +|
T Consensus 102 ag~kfd~~~yk~s~G~~G~Gls~vnalS~~~~v~t~r~g~--~~~~~~~~G~~~~~~~~~~~~~~~GT~I~----F--~P 173 (638)
T PRK05644 102 AGGKFGGGGYKVSGGLHGVGVSVVNALSTWLEVEVKRDGK--IYYQEYERGVPVTPLEVIGETDETGTTVT----F--KP 173 (638)
T ss_pred ccCccCCCcccccCCccccchhhhhheeceEEEEEEeCCc--EEEEEEECCeEccCccccCCcCCCCcEEE----E--EE
Confidence 389999999999999998 9999997654 7888898887653333333 67999999 5 99
Q ss_pred hhhcccCCChHHHHHHHHHHHHHhhcCCCeEEEEEECC
Q psy1955 430 TRRKALKQPSEEYNKIADVVSRYAVHNPHVGFTLKKQN 467 (512)
Q Consensus 430 vRrk~~~~~~~e~~~i~~~l~~yaL~~p~v~f~l~~~~ 467 (512)
.|++| +....++..|.+.++.+|+.||.|+|+|.+..
T Consensus 174 d~~~F-~~~~~e~~~i~~rl~~~A~l~pgl~i~l~~er 210 (638)
T PRK05644 174 DPEIF-ETTEFDYDTLATRLRELAFLNKGLKITLTDER 210 (638)
T ss_pred CHHHc-CCcccCHHHHHHHHHHHHhhCCCcEEEEEecc
Confidence 99998 77777889999999999999999999999764
No 29
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=99.63 E-value=1.3e-15 Score=169.43 Aligned_cols=156 Identities=17% Similarity=0.294 Sum_probs=123.4
Q ss_pred hhHHHHHHHHHHHHhc---CCCCcceeecceeeEEEEEccCceeeEeecCCCCCCCcchhhhhhhccccCCccccccccc
Q psy1955 286 DTIIERVQSMLEKTLL---GSNTSRVFYTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNS 362 (512)
Q Consensus 286 ~~I~~~I~~~l~~~l~---~~~~~r~~~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~~~~~~~TSKi~~~~dl~~ 362 (512)
..+...+++.|+|+++ ++-.++ |.|.+...| .++|.|||+||+.+ +|.|||+...+++..
T Consensus 29 ~gl~~vv~Elv~NaiDe~~ag~a~~--------I~V~i~~~g--~I~V~DnG~GIp~~-------~h~~~ki~~~e~i~~ 91 (654)
T TIGR01059 29 TGLHHLVYEVVDNSIDEAMAGYCDT--------INVTINDDG--SVTVEDNGRGIPVD-------IHPEEGISAVEVVLT 91 (654)
T ss_pred chHHhhhHHhhhccccccccCCCCE--------EEEEEeCCC--cEEEEEeCCCcCcc-------ccCcCCCCchHHhee
Confidence 5678889999999998 331121 667776655 39999999999976 566666666665544
Q ss_pred c-------------ccccccchhhhhHhhhcc-eEEEEecCCCCCceEEEEecCccccc--ccccCCCCCceEEehhhcc
Q psy1955 363 I-------------STFGFRGEALASISHVAH-LTIITKTKTSPCAYRASYIDSKLKDP--IKPCAGNQGTQIIAEDLFY 426 (512)
Q Consensus 363 ~-------------~t~GfRGeALaSi~~~s~-l~I~T~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~GTtV~V~~lF~ 426 (512)
. .|.||||+||+|++++|+ ++|.|++.+.. |...|.+|....+ ..+.+.+.||+|+ |.
T Consensus 92 ~l~ag~kf~~~~~k~s~G~~G~gl~~inalS~~l~v~~~~~g~~--~~~~~~~G~~~~~l~~~~~~~~~GT~V~----F~ 165 (654)
T TIGR01059 92 VLHAGGKFDKDSYKVSGGLHGVGVSVVNALSEWLEVTVFRDGKI--YRQEFERGIPLGPLEVVGETKKTGTTVR----FW 165 (654)
T ss_pred eecccCccCCCcceecCCccchhHHHHHHhcCeEEEEEEECCeE--EEEEEeCCCcccCceeccCCCCCCcEEE----EE
Confidence 4 689999999999999998 99999986543 7888888865432 3456778999999 99
Q ss_pred cchhhhcccCCChHHHHHHHHHHHHHhhcCCCeEEEEEECC
Q psy1955 427 NIPTRRKALKQPSEEYNKIADVVSRYAVHNPHVGFTLKKQN 467 (512)
Q Consensus 427 n~PvRrk~~~~~~~e~~~i~~~l~~yaL~~p~v~f~l~~~~ 467 (512)
+.|. +|. +...++..|.+.++.+|++||.|+|+|.+..
T Consensus 166 pdp~--~F~-~~~~e~~~i~~rl~~~A~l~pgl~i~l~~er 203 (654)
T TIGR01059 166 PDPE--IFE-TTEFDFDILAKRLRELAFLNSGVKISLEDER 203 (654)
T ss_pred EChH--HhC-CcccCHHHHHHHHHHhhccCCCeEEEEEeec
Confidence 9999 455 5667888999999999999999999999753
No 30
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=99.62 E-value=4.6e-15 Score=165.04 Aligned_cols=153 Identities=18% Similarity=0.229 Sum_probs=111.9
Q ss_pred ccccChHHHHHHhcCCcc-----cCHHHHHHHHHHcccc---CC-CCeEEEEEEeCCeeeEEEEeCCCCCCHHhHHHHHh
Q psy1955 7 IKKLDETVVNRIAAGEVI-----QRPANALKELLENSLD---AK-STSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCE 77 (512)
Q Consensus 7 i~~l~~~~~~~i~s~~~i-----~~~~~~v~eLv~Ns~d---A~-a~~i~i~~~~~~~~~i~v~DnG~Gi~~~~~~~~~~ 77 (512)
|+.|..---=+.+-|..| ..+..+|+|||+||+| || |+.|.|.++.+|. |+|.|||+||+.+
T Consensus 6 i~~L~~lE~vr~RP~mYiGs~~~~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i~~~g~--I~V~DnG~GIp~~------- 76 (654)
T TIGR01059 6 IKVLEGLEAVRKRPGMYIGSTGETGLHHLVYEVVDNSIDEAMAGYCDTINVTINDDGS--VTVEDNGRGIPVD------- 76 (654)
T ss_pred CeEecchHHHhcCCCceeCCCCcchHHhhhHHhhhccccccccCCCCEEEEEEeCCCc--EEEEEeCCCcCcc-------
Confidence 555654444445556666 5678899999999999 99 9999999987764 9999999999986
Q ss_pred hcccCCCCCccccccc-------------cccCCcchhhhhhhccce-EEEEEecCCCCceEEEEeeehh----------
Q psy1955 78 RFTTSKLTQFEDLNSI-------------STFGFRGEALASISHVAH-LTIITKTKTSPCAYRWCTYLAD---------- 133 (512)
Q Consensus 78 ~~~tsK~~~~~d~~~~-------------~~~G~rGeaL~si~~~s~-l~i~S~~~~~~~~~~~~~~~~d---------- 133 (512)
+|.|+|+...+++... .+.||||+||++++++|+ ++|.|+..+.. |+. .|...
T Consensus 77 ~h~~~ki~~~e~i~~~l~ag~kf~~~~~k~s~G~~G~gl~~inalS~~l~v~~~~~g~~--~~~-~~~~G~~~~~l~~~~ 153 (654)
T TIGR01059 77 IHPEEGISAVEVVLTVLHAGGKFDKDSYKVSGGLHGVGVSVVNALSEWLEVTVFRDGKI--YRQ-EFERGIPLGPLEVVG 153 (654)
T ss_pred ccCcCCCCchHHheeeecccCccCCCcceecCCccchhHHHHHHhcCeEEEEEEECCeE--EEE-EEeCCCcccCceecc
Confidence 4555665555554443 789999999999999998 99999975432 655 55511
Q ss_pred -----hhhhhhcccchhhhHhhhcCCcHHHHHhhhhhc------ccCeEEEecCC
Q psy1955 134 -----LMALALMEMSQYLQRDKEQIGDKEEKQWYRTVE------HTLVPLMKSQY 177 (512)
Q Consensus 134 -----l~~~~F~n~Pv~~~Rrk~lks~~~E~~ki~~lv------~p~Vs~~~~~~ 177 (512)
-+...|++-|. + |+ +.+.++..|.+.+ +|+|.|...++
T Consensus 154 ~~~~~GT~V~F~pdp~---~--F~-~~~~e~~~i~~rl~~~A~l~pgl~i~l~~e 202 (654)
T TIGR01059 154 ETKKTGTTVRFWPDPE---I--FE-TTEFDFDILAKRLRELAFLNSGVKISLEDE 202 (654)
T ss_pred CCCCCCcEEEEEEChH---H--hC-CcccCHHHHHHHHHHhhccCCCeEEEEEee
Confidence 01224888887 3 54 5566677777766 99998877654
No 31
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=99.62 E-value=6.5e-15 Score=162.83 Aligned_cols=153 Identities=18% Similarity=0.227 Sum_probs=110.4
Q ss_pred ccccChHHHHHHhcCCccc-----CHHHHHHHHHHcccc---CC-CCeEEEEEEeCCeeeEEEEeCCCCCCHHhHHHHHh
Q psy1955 7 IKKLDETVVNRIAAGEVIQ-----RPANALKELLENSLD---AK-STSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCE 77 (512)
Q Consensus 7 i~~l~~~~~~~i~s~~~i~-----~~~~~v~eLv~Ns~d---A~-a~~i~i~~~~~~~~~i~v~DnG~Gi~~~~~~~~~~ 77 (512)
|+.|..---=+.+-|..|. .+..+|+|||+||+| || |+.|.|.++.+| .|+|.|||+|||.+
T Consensus 13 i~~L~~lE~Vr~RPgMYiGs~~~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~~~g--~I~V~DnG~GIp~~------- 83 (638)
T PRK05644 13 IQVLEGLEAVRKRPGMYIGSTGERGLHHLVYEIVDNSIDEALAGYCDHIEVTINEDG--SITVTDNGRGIPVD------- 83 (638)
T ss_pred CeEecchHHHhcCCCceECCCChhhHHhhhHHhhhcccccccCCCCCEEEEEEeCCC--cEEEEEeCccccCC-------
Confidence 5555443333444555654 457799999999999 99 999999998776 59999999999986
Q ss_pred hcccCCCCCcccccc-------------ccccCCcchhhhhhhccce-EEEEEecCCCCceEEEEeeeh-----hh----
Q psy1955 78 RFTTSKLTQFEDLNS-------------ISTFGFRGEALASISHVAH-LTIITKTKTSPCAYRWCTYLA-----DL---- 134 (512)
Q Consensus 78 ~~~tsK~~~~~d~~~-------------~~~~G~rGeaL~si~~~s~-l~i~S~~~~~~~~~~~~~~~~-----dl---- 134 (512)
+|.++|+...+++.. ..+.||||+||++++++|+ ++|.|+..+. +|+. .|.. .+
T Consensus 84 ~h~~~ki~~~e~i~~~lhag~kfd~~~yk~s~G~~G~Gls~vnalS~~~~v~t~r~g~--~~~~-~~~~G~~~~~~~~~~ 160 (638)
T PRK05644 84 IHPKTGKPAVEVVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALSTWLEVEVKRDGK--IYYQ-EYERGVPVTPLEVIG 160 (638)
T ss_pred ccCCCCCCchHHheeeecccCccCCCcccccCCccccchhhhhheeceEEEEEEeCCc--EEEE-EEECCeEccCccccC
Confidence 334444444433322 2489999999999999997 9999996543 6776 5651 11
Q ss_pred ------hhhhhcccchhhhHhhhcCCcHHHHHhhhhhc------ccCeEEEecCC
Q psy1955 135 ------MALALMEMSQYLQRDKEQIGDKEEKQWYRTVE------HTLVPLMKSQY 177 (512)
Q Consensus 135 ------~~~~F~n~Pv~~~Rrk~lks~~~E~~ki~~lv------~p~Vs~~~~~~ 177 (512)
....| .|. |++| ++...++..|.+.+ +|+|.|...++
T Consensus 161 ~~~~~GT~I~F--~Pd---~~~F-~~~~~e~~~i~~rl~~~A~l~pgl~i~l~~e 209 (638)
T PRK05644 161 ETDETGTTVTF--KPD---PEIF-ETTEFDYDTLATRLRELAFLNKGLKITLTDE 209 (638)
T ss_pred CcCCCCcEEEE--EEC---HHHc-CCcccCHHHHHHHHHHHHhhCCCcEEEEEec
Confidence 11125 677 8888 77777777777777 99998877654
No 32
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=99.58 E-value=3.7e-15 Score=163.96 Aligned_cols=180 Identities=14% Similarity=0.209 Sum_probs=126.7
Q ss_pred HHHHHHHHHhcCCCCcceeecceeeEEEEEccCceeeEeecCCCCCCCcchhhh---------hhhccccCCcccccccc
Q psy1955 291 RVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDI---------VCERFTTSKLTQFEDLN 361 (512)
Q Consensus 291 ~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~---------~~~~~~TSKi~~~~dl~ 361 (512)
.+.|.|.|++++.-.. +. ..|+|.+...| .++|.|||+||+.+.... +...|+++|++ |..
T Consensus 5 ~v~ElvdNAiD~~~~g--~a---t~I~V~i~~~g--~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kfd---~~~ 74 (594)
T smart00433 5 LVDEIVDNAADEALAG--YM---DTIKVTIDKDN--SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFD---DDA 74 (594)
T ss_pred EEeeehhcccchhccC--CC---CEEEEEEeCCC--eEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCCC---CCC
Confidence 4667788888875211 00 11777777666 799999999998533221 23345555543 333
Q ss_pred ccccccccchhhhhHhhhc-ceEEEEecCCCCCceEEEEec-Ccccccc--cccCCCCCceEEehhhcccchhhhcccCC
Q psy1955 362 SISTFGFRGEALASISHVA-HLTIITKTKTSPCAYRASYID-SKLKDPI--KPCAGNQGTQIIAEDLFYNIPTRRKALKQ 437 (512)
Q Consensus 362 ~~~t~GfRGeALaSi~~~s-~l~I~T~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~GTtV~V~~lF~n~PvRrk~~~~ 437 (512)
...|.||||++|++++++| .++|+|++.+. .|...|.+ |....+. .+...+.||+|+ | +|.|+++.+.
T Consensus 75 ~k~s~G~~G~Gls~vnalS~~l~v~~~~~g~--~~~~~~~~~G~~~~~~~~~~~~~~~GT~V~----F--~Pd~~~F~~~ 146 (594)
T smart00433 75 YKVSGGLHGVGASVVNALSTEFEVEVARDGK--EYKQSFSNNGKPLSEPKIIGDTKKDGTKVT----F--KPDLEIFGMT 146 (594)
T ss_pred ccccCCcccchHHHHHHhcCceEEEEEeCCc--EEEEEEeCCCeECccceecCCCCCCCcEEE----E--EECHHHhCCc
Confidence 3459999999999999997 69999998754 37888865 6554322 455678999999 5 8999999876
Q ss_pred ChHHHHHHHHHHHHHhhcCCCeEEEEEECCccc-eeeecCCCCCHHHHHHhhcC
Q psy1955 438 PSEEYNKIADVVSRYAVHNPHVGFTLKKQNENL-ADIRTNVNSSHSEVIGNIYG 490 (512)
Q Consensus 438 ~~~e~~~i~~~l~~yaL~~p~v~f~l~~~~~~~-~~~~~~~~~s~~~~i~~ifG 490 (512)
...++..|.+.++.+|+.||.|+|.|.+..... ..|.. .+.+.+-+..+.+
T Consensus 147 ~~~~~~~i~~rl~~~A~l~pgl~i~l~der~~~~~~f~~--~~Gl~~yv~~~~~ 198 (594)
T smart00433 147 TDDDFELLKRRLRELAFLNKGVKITLNDERSDEEETFLF--EGGIKDYVELLNK 198 (594)
T ss_pred ccchHHHHHHHHHHHHhcCCCcEEEEeccCCCcceEEEC--CCCHHHHHHHHhC
Confidence 577899999999999999999999999764221 11322 3457776655554
No 33
>cd00329 TopoII_MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. The GyrB dimerizes in response to ATP binding, and is homologous to the N-terminal half of eukaryotic Topo II and the ATPase fragment of MutL. Type II DNA topoisomerases catalyze the ATP-dependent transport of one DNA duplex through another, in the process generating transient double strand breaks via covalent attachments to both DNA strands at the 5' positions. Included in this group are proteins similar to human MLH1 and PMS2. MLH1 forms a heterodimer with PMS2 which functions in meiosis and in DNA mismatch
Probab=99.58 E-value=7.4e-15 Score=125.45 Aligned_cols=86 Identities=34% Similarity=0.471 Sum_probs=76.0
Q ss_pred HHHhhcceEeeecCCcccEEEEEEEecCccc-CCCceEEEEEeCc-------hHHHHHHHHhhcC---CCCCCeEEEEEe
Q psy1955 194 SLNNLELLSVEGTDDAFQLKVTGWITNVNFS-TKKMTFLLFINNP-------IKRMIEQVYSIYL---PKGSFPFVYLSL 262 (512)
Q Consensus 194 ~~~~~~l~~i~~~~~~~~~~v~G~is~p~~~-~~r~~q~lfVNgR-------i~k~I~~~Y~~~l---~~~~~P~~~L~i 262 (512)
....+.+++++.+.+ .++++|+++.|... ..+..||+|||+| +.++|.++|..++ +.+++|+++|++
T Consensus 11 ~~~~~~~~~~~~~~~--~~~v~g~l~~~~~~~~~~~~~~~fvN~r~v~~~~~~~~~i~~~~~~~~~~~~~~~~p~~vl~i 88 (107)
T cd00329 11 DKVADKLIYVEGESD--GFRVEGAISYPDSGRSSKDRQFSFVNGRPVREGGTHVKAVREAYTRALNGDDVRRYPVAVLSL 88 (107)
T ss_pred HHhHhhcEEEeccCC--CEEEEEEEeCCccCcccCCcEEEEEcCeEEcCCHHHHHHHHHHHHHHhcccCCCCCCEEEEEE
Confidence 445677888886655 69999999999875 3567899999999 8899999999998 899999999999
Q ss_pred eCCCceEEEeecCCCccee
Q psy1955 263 CMDPKNVDVNVHPTKHEVH 281 (512)
Q Consensus 263 ~ipp~~iDVNvhP~K~eV~ 281 (512)
+||++.+||||||+|++|+
T Consensus 89 ~~~~~~~d~nv~p~K~~v~ 107 (107)
T cd00329 89 KIPPSLVDVNVHPTKEEVR 107 (107)
T ss_pred EeChHHeeeCCCCCccccC
Confidence 9999999999999999985
No 34
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=99.55 E-value=6.1e-14 Score=155.11 Aligned_cols=172 Identities=16% Similarity=0.187 Sum_probs=122.3
Q ss_pred ccccChHHHHHHhcCCc-----ccCHHHHHHHHHHccccC----CCCeEEEEEEeCCeeeEEEEeCCCCCCHHhHHH---
Q psy1955 7 IKKLDETVVNRIAAGEV-----IQRPANALKELLENSLDA----KSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDI--- 74 (512)
Q Consensus 7 i~~l~~~~~~~i~s~~~-----i~~~~~~v~eLv~Ns~dA----~a~~i~i~~~~~~~~~i~v~DnG~Gi~~~~~~~--- 74 (512)
|+.|..-=-=+.+-|.. ...|..+|.|||+||+|+ +|+.|.|.++.+| .|+|.|||.|||.++.+.
T Consensus 13 i~~L~~lE~VrkRP~mYiGs~~~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~~dg--~I~V~DnGrGIP~~~~~~~~~ 90 (631)
T PRK05559 13 IEVLEGLEPVRKRPGMYIGSTDTRGLHHLVQEVIDNSVDEALAGHGKRIEVTLHADG--SVSVRDNGRGIPVGIHPEEGK 90 (631)
T ss_pred CeeccchHHHhcCCCceeCCCCCchhhhhhhhhhccccchhhcCCCCEEEEEEeCCC--cEEEEEcCCCCCcccccccCC
Confidence 55554322223334444 477899999999999998 7999999998776 599999999999998887
Q ss_pred -----HHhh-cccCCCCCccccccccccCCcchhhhhhhccc-eEEEEEecCCCCceEEEEeeeh-----hh--------
Q psy1955 75 -----VCER-FTTSKLTQFEDLNSISTFGFRGEALASISHVA-HLTIITKTKTSPCAYRWCTYLA-----DL-------- 134 (512)
Q Consensus 75 -----~~~~-~~tsK~~~~~d~~~~~~~G~rGeaL~si~~~s-~l~i~S~~~~~~~~~~~~~~~~-----dl-------- 134 (512)
++.+ |++||+.. +..+ .+.||+|+|++++.++| .++|.|+..+. .|+. .|.. .+
T Consensus 91 ~~~E~v~t~lhagsKf~~--~~yk-~SgGl~GvGls~vNalS~~l~V~s~r~g~--~~~~-~f~~G~~~~~l~~~~~~~~ 164 (631)
T PRK05559 91 SGVEVILTKLHAGGKFSN--KAYK-FSGGLHGVGVSVVNALSSRLEVEVKRDGK--VYRQ-RFEGGDPVGPLEVVGTAGK 164 (631)
T ss_pred cchheeeeeccccCccCC--cccc-ccCcccccchhhhhhheeeEEEEEEeCCe--EEEE-EEECCcCccCccccccccC
Confidence 6766 99999875 3444 78999999999999997 59999997542 2555 4541 01
Q ss_pred ----hhhhhcccchhhhHhhhcCCcHHHHHhhhhhc------ccCeEEEecCCc--ceeecCccChHHHHH
Q psy1955 135 ----MALALMEMSQYLQRDKEQIGDKEEKQWYRTVE------HTLVPLMKSQYQ--PSEKIVERACLLEIA 193 (512)
Q Consensus 135 ----~~~~F~n~Pv~~~Rrk~lks~~~E~~ki~~lv------~p~Vs~~~~~~~--~~~~t~~~s~~~~i~ 193 (512)
+..-| .|. |++| ++...+...+.+.+ +|++.+...++. ..+... +++.+.+.
T Consensus 165 ~~~GT~V~f--~PD---~~iF-~~~~~~~~~i~~~l~~~A~lnpgl~i~l~d~~~~~~f~~~-~gl~~~v~ 228 (631)
T PRK05559 165 RKTGTRVRF--WPD---PKIF-DSPKFSPERLKERLRSKAFLLPGLTITLNDERERQTFHYE-NGLKDYLA 228 (631)
T ss_pred CCCCcEEEE--EEC---HHHc-CCcccCHHHHHHHHHHHHhhCCCeEEEEEeCCceEEEECC-ccHHHHHH
Confidence 00113 566 8887 66666666666666 999988776652 344443 45666665
No 35
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=99.55 E-value=1.3e-14 Score=161.47 Aligned_cols=159 Identities=17% Similarity=0.300 Sum_probs=128.8
Q ss_pred hhHHHHHHHHHHHHhc---CCCCcceeecceeeEEEEEccCceeeEeecCCCCCCCcc----------hhhhhhhccccC
Q psy1955 286 DTIIERVQSMLEKTLL---GSNTSRVFYTQSTSIQVTVKQGGLKLLQIQDNGTGIRKE----------DMDIVCERFTTS 352 (512)
Q Consensus 286 ~~I~~~I~~~l~~~l~---~~~~~r~~~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~----------~l~~~~~~~~TS 352 (512)
.-++..+.+.|.|+++ ++-.++ |.|.+...| .++|.|||+||+.+ +++.+ ..|++|
T Consensus 36 ~GLhhlv~EivdNaiDE~~AG~a~~--------I~V~i~~dg--sIsV~DnGrGIPvd~h~~~g~~~~Elvlt-~lhAgg 104 (756)
T PRK14939 36 TGLHHMVYEVVDNAIDEALAGHCDD--------ITVTIHADG--SVSVSDNGRGIPTDIHPEEGVSAAEVIMT-VLHAGG 104 (756)
T ss_pred cchhhhhhHhhcccccccccCCCCE--------EEEEEcCCC--eEEEEEcCCcccCCcccccCCchhhheee-eecccC
Confidence 4677888889999988 331111 677776654 79999999999987 66655 899999
Q ss_pred CccccccccccccccccchhhhhHhhhcc-eEEEEecCCCCCceEEEEecCcccccccccC--CCCCceEEehhhcccch
Q psy1955 353 KLTQFEDLNSISTFGFRGEALASISHVAH-LTIITKTKTSPCAYRASYIDSKLKDPIKPCA--GNQGTQIIAEDLFYNIP 429 (512)
Q Consensus 353 Ki~~~~dl~~~~t~GfRGeALaSi~~~s~-l~I~T~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~GTtV~V~~lF~n~P 429 (512)
|+++ |...+ |.||||++++++.++|+ ++|+|+..+.. |+..|.+|....+..... .+.||+|++ +|
T Consensus 105 Kfd~--~~ykv-SgGlhGvG~svvNAlS~~l~v~v~r~gk~--~~q~f~~G~~~~~l~~~g~~~~~GT~V~F------~P 173 (756)
T PRK14939 105 KFDQ--NSYKV-SGGLHGVGVSVVNALSEWLELTIRRDGKI--HEQEFEHGVPVAPLKVVGETDKTGTEVRF------WP 173 (756)
T ss_pred CCCC--Ccccc-cCCccCccceEeehccCeEEEEEEeCCeE--EEEEEecCccccCccccCCcCCCCcEEEE------EE
Confidence 9996 77777 99999999999999998 99999976643 888888886544333333 679999999 99
Q ss_pred hhhcccCCChHHHHHHHHHHHHHhhcCCCeEEEEEECC
Q psy1955 430 TRRKALKQPSEEYNKIADVVSRYAVHNPHVGFTLKKQN 467 (512)
Q Consensus 430 vRrk~~~~~~~e~~~i~~~l~~yaL~~p~v~f~l~~~~ 467 (512)
.|++| +...-++..|.+.++.+|+.||.|+|.|.+..
T Consensus 174 D~~iF-~~~~~~~~~i~~rl~elA~lnpgl~i~l~der 210 (756)
T PRK14939 174 SPEIF-ENTEFDYDILAKRLRELAFLNSGVRIRLKDER 210 (756)
T ss_pred CHHHc-CCcccCHHHHHHHHHHHhhcCCCCEEEEeccC
Confidence 99998 66666788899999999999999999999754
No 36
>PRK05218 heat shock protein 90; Provisional
Probab=99.55 E-value=1.1e-13 Score=152.62 Aligned_cols=265 Identities=19% Similarity=0.235 Sum_probs=164.4
Q ss_pred HHHHHHhcCCcccCHHHHHHHHHHccccC----------------CCC--eEEEEEEeCCeeeEEEEeCCCCCCHHhHHH
Q psy1955 13 TVVNRIAAGEVIQRPANALKELLENSLDA----------------KST--SIQVTVKQGGLKLLQIQDNGTGIRKEDMDI 74 (512)
Q Consensus 13 ~~~~~i~s~~~i~~~~~~v~eLv~Ns~dA----------------~a~--~i~i~~~~~~~~~i~v~DnG~Gi~~~~~~~ 74 (512)
.++..|..+ ...++..++.|||+||.|| ++. .|.|.++.++. .|+|.|||+||+++++..
T Consensus 14 ~ll~ll~~~-LYs~~~v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~-~i~I~DnG~GMt~eel~~ 91 (613)
T PRK05218 14 QLLHLMIHS-LYSNKEIFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISFDKEAR-TLTISDNGIGMTREEVIE 91 (613)
T ss_pred HHHHHHhhh-hcCCchHHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEEcCCCC-eEEEEECCCCCCHHHHHH
Confidence 345555544 5678999999999999999 333 56666666655 499999999999999999
Q ss_pred HHhhcccC-------CCCCccccccccccCCcchhhhhhhccc-eEEEEEecCC-CCceEEEEeeehh-hhhhhhcccch
Q psy1955 75 VCERFTTS-------KLTQFEDLNSISTFGFRGEALASISHVA-HLTIITKTKT-SPCAYRWCTYLAD-LMALALMEMSQ 144 (512)
Q Consensus 75 ~~~~~~ts-------K~~~~~d~~~~~~~G~rGeaL~si~~~s-~l~i~S~~~~-~~~~~~~~~~~~d-l~~~~F~n~Pv 144 (512)
.+.++++| |+....+ .....+|..|.+++|+..++ +|+|.||+.+ +..||+| ....+ . |.-.|+
T Consensus 92 ~l~~ia~Sg~~~f~~k~~~~~~-~~~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~~~w-~~~g~~~----~~i~~~ 165 (613)
T PRK05218 92 NLGTIAKSGTKEFLEKLKGDQK-KDSQLIGQFGVGFYSAFMVADKVTVITRSAGPAAEAVRW-ESDGEGE----YTIEEI 165 (613)
T ss_pred HHHhhccccchhHHHHhhcccc-cccccccccCcCchhhhhccCEEEEEEcCCCCCCceEEE-EEeCCce----eEEeEC
Confidence 99899988 3321100 12356788888888888887 6999999977 6678887 44311 1 111111
Q ss_pred h-hh---H-hhhcCCcHHHH---Hhhhhhc--------ccCeEE------EecCCcceeecCccChHHHHH----HHH--
Q psy1955 145 Y-LQ---R-DKEQIGDKEEK---QWYRTVE--------HTLVPL------MKSQYQPSEKIVERACLLEIA----SLN-- 196 (512)
Q Consensus 145 ~-~~---R-rk~lks~~~E~---~ki~~lv--------~p~Vs~------~~~~~~~~~~t~~~s~~~~i~----~~~-- 196 (512)
= .. + .=+|+....|+ .+|.+++ +| |.| ..++....|.....+..+... ..+
T Consensus 166 ~~~~~GT~I~l~Lk~~~~e~~e~~~i~~li~kys~~l~~P-I~~~~~~~~~in~~~~~w~~~~~~i~~~~~~~fy~~~~~ 244 (613)
T PRK05218 166 EKEERGTEITLHLKEDEDEFLDEWRIRSIIKKYSDFIPVP-IKLEKEEEETINSASALWTRSKSEITDEEYKEFYKHLAH 244 (613)
T ss_pred CCCCCCcEEEEEECcchhhhcCHHHHHHHHHHHHhcCCCC-EEEecccceeecCCccceecCCccccHHHHHHHhhhhcc
Confidence 0 00 1 11245555444 6677766 45 666 222333455544334444443 223
Q ss_pred --hhcceEeeecCCcccEEEEEEEecCccc-------CCCceEEEEEeCc-hHHHHHHHHhhcCCCCCCeEEEEEeeCCC
Q psy1955 197 --NLELLSVEGTDDAFQLKVTGWITNVNFS-------TKKMTFLLFINNP-IKRMIEQVYSIYLPKGSFPFVYLSLCMDP 266 (512)
Q Consensus 197 --~~~l~~i~~~~~~~~~~v~G~is~p~~~-------~~r~~q~lfVNgR-i~k~I~~~Y~~~l~~~~~P~~~L~i~ipp 266 (512)
...|..+....+. .+.+.|++..|... ..+..+.+|||+| |..-...+.-+++ .|+.=-|+.
T Consensus 245 ~~~~pl~~i~~~~e~-~~~~~gll~iP~~~~~~~~~~~~~~~~~lyvn~v~I~d~~~~lLP~wl-------~Fv~GVVDs 316 (613)
T PRK05218 245 DFDDPLFWIHNNVEG-PFEYTGLLYIPKKAPFDLFNRDRKGGLKLYVKRVFIMDDAEELLPEYL-------RFVKGVIDS 316 (613)
T ss_pred cccCCcEEEEcccCC-ceEEEEEEEeCCCCccchhhhcccccEEEEECcEEeeCchhhhchHHH-------hheEEEeec
Confidence 4557778764443 68999999888654 2456689999999 6665544433332 133445666
Q ss_pred ceEEEeecCCCcceeecchhhHHHHHHHHHHHH
Q psy1955 267 KNVDVNVHPTKHEVHFLHEDTIIERVQSMLEKT 299 (512)
Q Consensus 267 ~~iDVNvhP~K~eV~f~~~~~I~~~I~~~l~~~ 299 (512)
+.+-.||. ||. ..++.++..|++.|...
T Consensus 317 ~dLplnvS---RE~--lq~~~~l~~i~~~l~~k 344 (613)
T PRK05218 317 EDLPLNVS---REI--LQEDRVVKKIRKAITKK 344 (613)
T ss_pred CCCCCccC---HHH--HhcCHHHHHHHHHHHHH
Confidence 67777876 553 33444555555544443
No 37
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=99.55 E-value=3.7e-14 Score=156.81 Aligned_cols=182 Identities=15% Similarity=0.262 Sum_probs=138.2
Q ss_pred hhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCceeeEeecCCCCCCCcchhhh--------hhhc-cccCCccc
Q psy1955 286 DTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDI--------VCER-FTTSKLTQ 356 (512)
Q Consensus 286 ~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~--------~~~~-~~TSKi~~ 356 (512)
.-+...+.+.|.|++++.... + ...|.|.+...| .++|.|||+||+.+.... +..+ |++||++.
T Consensus 36 ~gl~~lv~EivdNaiDe~~ag--~---a~~I~V~i~~dg--~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lhagsKf~~ 108 (631)
T PRK05559 36 RGLHHLVQEVIDNSVDEALAG--H---GKRIEVTLHADG--SVSVRDNGRGIPVGIHPEEGKSGVEVILTKLHAGGKFSN 108 (631)
T ss_pred chhhhhhhhhhccccchhhcC--C---CCEEEEEEeCCC--cEEEEEcCCCCCcccccccCCcchheeeeeccccCccCC
Confidence 567888999999999873211 0 011667776554 799999999999988876 4444 99999985
Q ss_pred cccccccccccccchhhhhHhhhc-ceEEEEecCCCCCceEEEEecCccccc---ccccC-CCCCceEEehhhcccchhh
Q psy1955 357 FEDLNSISTFGFRGEALASISHVA-HLTIITKTKTSPCAYRASYIDSKLKDP---IKPCA-GNQGTQIIAEDLFYNIPTR 431 (512)
Q Consensus 357 ~~dl~~~~t~GfRGeALaSi~~~s-~l~I~T~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~GTtV~V~~lF~n~PvR 431 (512)
+... .|.||||++|++++.+| .++|+|++.+.. |...|.+|....+ ..+++ .+.||+|++ +|.|
T Consensus 109 --~~yk-~SgGl~GvGls~vNalS~~l~V~s~r~g~~--~~~~f~~G~~~~~l~~~~~~~~~~~GT~V~f------~PD~ 177 (631)
T PRK05559 109 --KAYK-FSGGLHGVGVSVVNALSSRLEVEVKRDGKV--YRQRFEGGDPVGPLEVVGTAGKRKTGTRVRF------WPDP 177 (631)
T ss_pred --cccc-ccCcccccchhhhhhheeeEEEEEEeCCeE--EEEEEECCcCccCccccccccCCCCCcEEEE------EECH
Confidence 3444 68999999999999997 599999976533 7788887754332 23343 679999999 8999
Q ss_pred hcccCCChHHHHHHHHHHHHHhhcCCCeEEEEEECC-ccceeeecCCCCCHHHHHHhhcC
Q psy1955 432 RKALKQPSEEYNKIADVVSRYAVHNPHVGFTLKKQN-ENLADIRTNVNSSHSEVIGNIYG 490 (512)
Q Consensus 432 rk~~~~~~~e~~~i~~~l~~yaL~~p~v~f~l~~~~-~~~~~~~~~~~~s~~~~i~~ifG 490 (512)
++| +...-+...|.+.|+++|+.+|+++|.|.++. +.. |... +.+.+.+..++.
T Consensus 178 ~iF-~~~~~~~~~i~~~l~~~A~lnpgl~i~l~d~~~~~~--f~~~--~gl~~~v~~~~~ 232 (631)
T PRK05559 178 KIF-DSPKFSPERLKERLRSKAFLLPGLTITLNDERERQT--FHYE--NGLKDYLAELNE 232 (631)
T ss_pred HHc-CCcccCHHHHHHHHHHHHhhCCCeEEEEEeCCceEE--EECC--ccHHHHHHHHhC
Confidence 887 66666788899999999999999999999887 322 4333 458888877764
No 38
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=99.52 E-value=1.1e-13 Score=154.17 Aligned_cols=157 Identities=17% Similarity=0.222 Sum_probs=117.0
Q ss_pred ccccChHHHHHHhcCCccc------CHHHHHHHHHHcccc---CC-CCeEEEEEEeCCeeeEEEEeCCCCCCHH------
Q psy1955 7 IKKLDETVVNRIAAGEVIQ------RPANALKELLENSLD---AK-STSIQVTVKQGGLKLLQIQDNGTGIRKE------ 70 (512)
Q Consensus 7 i~~l~~~~~~~i~s~~~i~------~~~~~v~eLv~Ns~d---A~-a~~i~i~~~~~~~~~i~v~DnG~Gi~~~------ 70 (512)
|+.|..---=+.+-|..|. -+..+|.|+|+||+| || |+.|.|.++.+| .|+|.|||.|||.+
T Consensus 12 i~vL~gle~VRkRPgMYIGst~~~~GLhhlv~EivdNaiDE~~AG~a~~I~V~i~~dg--sIsV~DnGrGIPvd~h~~~g 89 (756)
T PRK14939 12 IKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVYEVVDNAIDEALAGHCDDITVTIHADG--SVSVSDNGRGIPTDIHPEEG 89 (756)
T ss_pred CeEecccHHHhcCCCCeeCCCCCCcchhhhhhHhhcccccccccCCCCEEEEEEcCCC--eEEEEEcCCcccCCcccccC
Confidence 5565543333445566653 467899999999999 99 999999998776 59999999999987
Q ss_pred ----hHHHHHhhcccCCCCCccccccccccCCcchhhhhhhccce-EEEEEecCCCCceEEEEeeehh-----h------
Q psy1955 71 ----DMDIVCERFTTSKLTQFEDLNSISTFGFRGEALASISHVAH-LTIITKTKTSPCAYRWCTYLAD-----L------ 134 (512)
Q Consensus 71 ----~~~~~~~~~~tsK~~~~~d~~~~~~~G~rGeaL~si~~~s~-l~i~S~~~~~~~~~~~~~~~~d-----l------ 134 (512)
++. +...|+++|+.+ |..++ +.|++|+|++++.++|+ ++|.++..+. .|+. .|... +
T Consensus 90 ~~~~Elv-lt~lhAggKfd~--~~ykv-SgGlhGvG~svvNAlS~~l~v~v~r~gk--~~~q-~f~~G~~~~~l~~~g~~ 162 (756)
T PRK14939 90 VSAAEVI-MTVLHAGGKFDQ--NSYKV-SGGLHGVGVSVVNALSEWLELTIRRDGK--IHEQ-EFEHGVPVAPLKVVGET 162 (756)
T ss_pred Cchhhhe-eeeecccCCCCC--Ccccc-cCCccCccceEeehccCeEEEEEEeCCe--EEEE-EEecCccccCccccCCc
Confidence 332 458899999976 77777 99999999999999997 9999996543 2655 55511 1
Q ss_pred ----hhhhhcccchhhhHhhhcCCcHHHHHhhhhhc------ccCeEEEecCCc
Q psy1955 135 ----MALALMEMSQYLQRDKEQIGDKEEKQWYRTVE------HTLVPLMKSQYQ 178 (512)
Q Consensus 135 ----~~~~F~n~Pv~~~Rrk~lks~~~E~~ki~~lv------~p~Vs~~~~~~~ 178 (512)
...-| .|. |++| ++..-++..|.+.+ +|+|.+...++.
T Consensus 163 ~~~GT~V~F--~PD---~~iF-~~~~~~~~~i~~rl~elA~lnpgl~i~l~der 210 (756)
T PRK14939 163 DKTGTEVRF--WPS---PEIF-ENTEFDYDILAKRLRELAFLNSGVRIRLKDER 210 (756)
T ss_pred CCCCcEEEE--EEC---HHHc-CCcccCHHHHHHHHHHHhhcCCCCEEEEeccC
Confidence 01123 667 8888 66666666666665 999988887653
No 39
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.48 E-value=1.2e-14 Score=130.84 Aligned_cols=101 Identities=31% Similarity=0.507 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHccccCCCCeEEEEEEeC--CeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCCcchh-
Q psy1955 26 RPANALKELLENSLDAKSTSIQVTVKQG--GLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFRGEA- 102 (512)
Q Consensus 26 ~~~~~v~eLv~Ns~dA~a~~i~i~~~~~--~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~rGea- 102 (512)
++..||.|||+||+||+|+.|.|.++.. +...|.|.|||.||+++++..++..+.++|... ....++|.+|.+
T Consensus 2 ~~~~al~ElI~Ns~DA~a~~I~I~i~~~~~~~~~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~----~~~~~~G~~G~G~ 77 (137)
T PF13589_consen 2 SPEDALRELIDNSIDAGATNIKISIDEDKKGERYIVIEDNGEGMSREDLESFFRIGRSSKKSE----KDRQSIGRFGIGL 77 (137)
T ss_dssp SCTHHHHHHHHHHHHHHHHHEEEEEEEETTTTTEEEEEESSS---HHHHHHHTTCHHTHHHHH----HHGGGGGGGTSGC
T ss_pred cHHHHHHHHHHHHHHccCCEEEEEEEcCCCCCcEEEEEECCcCCCHHHHHHhccccCCCCCch----hhhhcCCCcceEH
Confidence 4578999999999999999999999543 456799999999999999999888888777311 124678888888
Q ss_pred -hhhhhccceEEEEEecCCCCceEEEEeee
Q psy1955 103 -LASISHVAHLTIITKTKTSPCAYRWCTYL 131 (512)
Q Consensus 103 -L~si~~~s~l~i~S~~~~~~~~~~~~~~~ 131 (512)
+|.++....++|.|++.+....+.+ .+.
T Consensus 78 k~A~~~~~~~~~v~S~~~~~~~~~~~-~~~ 106 (137)
T PF13589_consen 78 KLAIFSLGDRVEVISKTNGESFTYTI-DYD 106 (137)
T ss_dssp GGGGGGTEEEEEEEEESTTSSSEEEE-EEE
T ss_pred HHHHHHhcCEEEEEEEECCCCcEEEE-EEe
Confidence 4455544579999999988888776 444
No 40
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.47 E-value=1.4e-13 Score=146.19 Aligned_cols=101 Identities=25% Similarity=0.377 Sum_probs=85.1
Q ss_pred ccCHHHHHHHHHHccccCCCC-----eEEEEEEeC--CeeeEEEEeCCCCCCHHhHHHHHhh-cccCCCCCccccccccc
Q psy1955 24 IQRPANALKELLENSLDAKST-----SIQVTVKQG--GLKLLQIQDNGTGIRKEDMDIVCER-FTTSKLTQFEDLNSIST 95 (512)
Q Consensus 24 i~~~~~~v~eLv~Ns~dA~a~-----~i~i~~~~~--~~~~i~v~DnG~Gi~~~~~~~~~~~-~~tsK~~~~~d~~~~~~ 95 (512)
...+.++++|||+||+||+++ .|.|.+... +...|.|.|||+||++++++.+|.+ |+|||+.+ ...+
T Consensus 26 ~~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~-----~~~s 100 (488)
T TIGR01052 26 IRSLTTVIHELVTNSLDACEEAGILPDIKVEIEKIGKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHR-----IIQS 100 (488)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCceEEEEEEECCCCCCHHHHHhhhhhccccCcccc-----cccc
Confidence 467889999999999999876 688888643 2347999999999999999999998 78888764 2467
Q ss_pred cCCcchhhhhhhccce------EEEEEecCCCCceEEEEee
Q psy1955 96 FGFRGEALASISHVAH------LTIITKTKTSPCAYRWCTY 130 (512)
Q Consensus 96 ~G~rGeaL~si~~~s~------l~i~S~~~~~~~~~~~~~~ 130 (512)
.|++|+||+++..+|+ ++|.|++.++..||++ .+
T Consensus 101 ~G~~GlGLs~~~~isq~~~G~~i~V~S~~~g~~~~~~~-~~ 140 (488)
T TIGR01052 101 RGQQGIGISGAVLYSQMTTGKPVKVISSTGGEIYVYKM-KL 140 (488)
T ss_pred CCCccEehhHHHHHHHHcCCceEEEEEecCCceEEEEE-EE
Confidence 8999999999988886 8999999887788887 55
No 41
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.47 E-value=1.1e-12 Score=141.05 Aligned_cols=175 Identities=19% Similarity=0.265 Sum_probs=126.2
Q ss_pred Ccceeecch-hhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEc--cCceeeEeecCCCCCCCcchhhhhhhcc-ccC
Q psy1955 277 KHEVHFLHE-DTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVK--QGGLKLLQIQDNGTGIRKEDMDIVCERF-TTS 352 (512)
Q Consensus 277 K~eV~f~~~-~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~--~~~~~~i~v~Dng~gi~~~~l~~~~~~~-~TS 352 (512)
|.-+-|.+. ..+...++++|+|++++....... +.+.|.+... ..+.-.+.|.|||+||+++++..+..++ ++|
T Consensus 25 ~~~~gf~~p~~~L~qVLkNLIeNAIDa~~~~gil--p~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~S 102 (535)
T PRK04184 25 KELLGFDNPARALYTTVKELVDNSLDACEEAGIL--PDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGS 102 (535)
T ss_pred ccceeecCCHHHHHHHHHHHHHHHHHHhhhcCCC--ceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHHhhhhhccc
Confidence 445566664 668889999999999987543211 1122333322 2344578999999999999999988774 889
Q ss_pred CccccccccccccccccchhhhhHhhhcc------eEEEEecCCCCCceEEEEe------cCcccc-cccccCCCCCceE
Q psy1955 353 KLTQFEDLNSISTFGFRGEALASISHVAH------LTIITKTKTSPCAYRASYI------DSKLKD-PIKPCAGNQGTQI 419 (512)
Q Consensus 353 Ki~~~~dl~~~~t~GfRGeALaSi~~~s~------l~I~T~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~GTtV 419 (512)
|+... ..+.|++|..|++...+++ ++|.|++.+...++...+. .+.... ...+....+||+|
T Consensus 103 K~~~~-----~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~~~~~l~id~~kn~g~i~~~~~~~~~~~~GT~V 177 (535)
T PRK04184 103 KFHNL-----RQSRGQQGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYYFELKIDTKKNEPIILEREEVDWDRWHGTRV 177 (535)
T ss_pred ccccc-----ccCCCCCCcchHHHHHHHHHhcCCcEEEEEecCCCceEEEEEEEecccccCCeeccccccCCCCCCCEEE
Confidence 97642 3578999999999887764 6899998766546666653 122221 1123466799999
Q ss_pred EehhhcccchhhhcccCCChHHHHHHHHHHHHHhhcCCCeEEEEEECCcc
Q psy1955 420 IAEDLFYNIPTRRKALKQPSEEYNKIADVVSRYAVHNPHVGFTLKKQNEN 469 (512)
Q Consensus 420 ~V~~lF~n~PvRrk~~~~~~~e~~~i~~~l~~yaL~~p~v~f~l~~~~~~ 469 (512)
.|. ++.++|.| .+.|.++|+++|+++|+++|.|.+.++.
T Consensus 178 ~V~-l~~~~~~~----------~~~I~e~i~r~Al~nP~~~~~l~~~~g~ 216 (535)
T PRK04184 178 ELE-IEGDWYRA----------KQRIYEYLKRTAIVNPHARITFKDPDGE 216 (535)
T ss_pred EEE-ECCcChhh----------HHHHHHHHHHHHHhCCCeEEEEEeCCCe
Confidence 999 88888854 4578999999999999999999976554
No 42
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.30 E-value=1.1e-11 Score=133.33 Aligned_cols=101 Identities=27% Similarity=0.382 Sum_probs=80.4
Q ss_pred cCHHHHHHHHHHccccCCCC-----eEEEEEE----eCCeeeEEEEeCCCCCCHHhHHHHHhhc-ccCCCCCcccccccc
Q psy1955 25 QRPANALKELLENSLDAKST-----SIQVTVK----QGGLKLLQIQDNGTGIRKEDMDIVCERF-TTSKLTQFEDLNSIS 94 (512)
Q Consensus 25 ~~~~~~v~eLv~Ns~dA~a~-----~i~i~~~----~~~~~~i~v~DnG~Gi~~~~~~~~~~~~-~tsK~~~~~d~~~~~ 94 (512)
..+.++++|||+||+||.++ .|.|.+. .++...|.|.|||+||++++++.+|.+| ++||+... ..
T Consensus 35 ~~L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~-----~~ 109 (535)
T PRK04184 35 RALYTTVKELVDNSLDACEEAGILPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNL-----RQ 109 (535)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCCceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHHhhhhhcccccccc-----cc
Confidence 34699999999999999876 5777775 3456789999999999999999999986 77886532 35
Q ss_pred ccCCcchhhhhhhccce------EEEEEecCCCCceEEEEeee
Q psy1955 95 TFGFRGEALASISHVAH------LTIITKTKTSPCAYRWCTYL 131 (512)
Q Consensus 95 ~~G~rGeaL~si~~~s~------l~i~S~~~~~~~~~~~~~~~ 131 (512)
+.|++|.+|++...+++ ++|.|++.++..++.+ .+.
T Consensus 110 s~G~~GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~~~~-~l~ 151 (535)
T PRK04184 110 SRGQQGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYYF-ELK 151 (535)
T ss_pred CCCCCCcchHHHHHHHHHhcCCcEEEEEecCCCceEEEE-EEE
Confidence 78999999988766653 7899998776657766 443
No 43
>PRK05218 heat shock protein 90; Provisional
Probab=99.29 E-value=3.9e-11 Score=132.71 Aligned_cols=196 Identities=18% Similarity=0.230 Sum_probs=132.3
Q ss_pred HHHHHHHHHhcCCCCcce-------e--ecceeeEEEEEccCceeeEeecCCCCCCCcchhhhhhhccccC-------Cc
Q psy1955 291 RVQSMLEKTLLGSNTSRV-------F--YTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTS-------KL 354 (512)
Q Consensus 291 ~I~~~l~~~l~~~~~~r~-------~--~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~~~~~~~TS-------Ki 354 (512)
.++++|.|+++|....|. . ..-...|.|.+...+. .+.|.|||+||..+++.....+|++| |+
T Consensus 30 ~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~-~i~I~DnG~GMt~eel~~~l~~ia~Sg~~~f~~k~ 108 (613)
T PRK05218 30 FLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISFDKEAR-TLTISDNGIGMTREEVIENLGTIAKSGTKEFLEKL 108 (613)
T ss_pred HHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEEcCCCC-eEEEEECCCCCCHHHHHHHHHhhccccchhHHHHh
Confidence 488999999988542211 0 0011236666665554 49999999999999999999999999 56
Q ss_pred cc----cccccccccccccchhhhhHhhhc-ceEEEEecCC-CCCceEEEEecCcccccccccC-CCCCceEEehhhccc
Q psy1955 355 TQ----FEDLNSISTFGFRGEALASISHVA-HLTIITKTKT-SPCAYRASYIDSKLKDPIKPCA-GNQGTQIIAEDLFYN 427 (512)
Q Consensus 355 ~~----~~dl~~~~t~GfRGeALaSi~~~s-~l~I~T~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~GTtV~V~~lF~n 427 (512)
.+ -.++-...++|| .|...+| .++|+||..+ +..++++...+++.. ...+.. .++||+|+|
T Consensus 109 ~~~~~~~~~~iG~fGiGf-----~S~f~va~~v~V~Sr~~~~~~~~~~w~~~g~~~~-~i~~~~~~~~GT~I~l------ 176 (613)
T PRK05218 109 KGDQKKDSQLIGQFGVGF-----YSAFMVADKVTVITRSAGPAAEAVRWESDGEGEY-TIEEIEKEERGTEITL------ 176 (613)
T ss_pred hcccccccccccccCcCc-----hhhhhccCEEEEEEcCCCCCCceEEEEEeCCcee-EEeECCCCCCCcEEEE------
Confidence 32 234445556666 4555565 7999999977 667888877655432 223333 489999999
Q ss_pred chhhhcccCCChHHH---HHHHHHHHHHh--hcCCCeEE-----EEEECCccceeeecCCCCCHHHHHHhhcChhhh---
Q psy1955 428 IPTRRKALKQPSEEY---NKIADVVSRYA--VHNPHVGF-----TLKKQNENLADIRTNVNSSHSEVIGNIYGNNIS--- 494 (512)
Q Consensus 428 ~PvRrk~~~~~~~e~---~~i~~~l~~ya--L~~p~v~f-----~l~~~~~~~~~~~~~~~~s~~~~i~~ifG~~~~--- 494 (512)
.++....++ .+|.++|.+|| +.+| |.| ++.++++.+ |...+ +++.+.....||..+.
T Consensus 177 ------~Lk~~~~e~~e~~~i~~li~kys~~l~~P-I~~~~~~~~~in~~~~~--w~~~~-~~i~~~~~~~fy~~~~~~~ 246 (613)
T PRK05218 177 ------HLKEDEDEFLDEWRIRSIIKKYSDFIPVP-IKLEKEEEETINSASAL--WTRSK-SEITDEEYKEFYKHLAHDF 246 (613)
T ss_pred ------EECcchhhhcCHHHHHHHHHHHHhcCCCC-EEEecccceeecCCccc--eecCC-ccccHHHHHHHhhhhcccc
Confidence 355544444 78999999999 8888 888 566766665 33332 3577777778766664
Q ss_pred -ccceeeecccccccc
Q psy1955 495 -RRVRRFSSASQSALA 509 (512)
Q Consensus 495 -~~l~~~~~~~~~~~~ 509 (512)
..|..+....+.++.
T Consensus 247 ~~pl~~i~~~~e~~~~ 262 (613)
T PRK05218 247 DDPLFWIHNNVEGPFE 262 (613)
T ss_pred cCCcEEEEcccCCceE
Confidence 447777755544443
No 44
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=99.21 E-value=3.2e-11 Score=123.92 Aligned_cols=121 Identities=24% Similarity=0.322 Sum_probs=102.2
Q ss_pred cccCHHHHHHHHHHccccCCC-----CeEEEEEE--eCCeeeEEEEeCCCCCCHHhHHHHH-hhcccCCCCCcccccccc
Q psy1955 23 VIQRPANALKELLENSLDAKS-----TSIQVTVK--QGGLKLLQIQDNGTGIRKEDMDIVC-ERFTTSKLTQFEDLNSIS 94 (512)
Q Consensus 23 ~i~~~~~~v~eLv~Ns~dA~a-----~~i~i~~~--~~~~~~i~v~DnG~Gi~~~~~~~~~-~~~~tsK~~~~~d~~~~~ 94 (512)
-+.++.++|+|||+||+||.. ..|.|.++ ..+...+.|.|||+||+++.++.+| .-+|.||++...+.+.++
T Consensus 33 p~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~~~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~~QsRGqq 112 (538)
T COG1389 33 PIRSLTTTVHELVTNSLDACEEAGILPDIKVEIERIGKDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRNIQSRGQQ 112 (538)
T ss_pred chhHHHHHHHHHHhcchhhHHhcCCCCceEEEEEecCCceEEEEEecCCCCCChhHhHHHHHHHhccchhhhhhhccccc
Confidence 467899999999999999863 35666664 3456689999999999999999766 668999998888888899
Q ss_pred ccCCcchhhhhhhccce-EEEEEecCCCCceEEEEeeehhhhhhhhcccchhhhH
Q psy1955 95 TFGFRGEALASISHVAH-LTIITKTKTSPCAYRWCTYLADLMALALMEMSQYLQR 148 (512)
Q Consensus 95 ~~G~rGeaL~si~~~s~-l~i~S~~~~~~~~~~~~~~~~dl~~~~F~n~Pv~~~R 148 (512)
.+|..|..|+|..+.+. ++|.|++.++..++.. ...-|. =.|-|.|++|
T Consensus 113 GiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~-~l~id~----~kNEp~Iv~r 162 (538)
T COG1389 113 GIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEY-ELKIDV----QKNEPEIVER 162 (538)
T ss_pred cccHHHHHHHHHhcCCCceEEEecCCCCcceEEE-EEEecC----CCCcchhhhc
Confidence 99999999999999997 9999999998888776 555677 7788888887
No 45
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=98.88 E-value=1.6e-08 Score=104.43 Aligned_cols=172 Identities=22% Similarity=0.322 Sum_probs=124.4
Q ss_pred hhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCcee--eEeecCCCCCCCcchhhhhhhc-cccCCccccccccc
Q psy1955 286 DTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGGLK--LLQIQDNGTGIRKEDMDIVCER-FTTSKLTQFEDLNS 362 (512)
Q Consensus 286 ~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~~~--~i~v~Dng~gi~~~~l~~~~~~-~~TSKi~~~~dl~~ 362 (512)
..+.+.|++++.|+|++++...+.+. |-|.+...|.+ .+.|+|||.||.++..+.++.+ .+.||++...+...
T Consensus 35 RsL~~tv~ElV~NSLDA~eeaGILPd----I~v~I~~~~~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~~QsRG 110 (538)
T COG1389 35 RSLTTTVHELVTNSLDACEEAGILPD----IKVEIERIGKDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRNIQSRG 110 (538)
T ss_pred hHHHHHHHHHHhcchhhHHhcCCCCc----eEEEEEecCCceEEEEEecCCCCCChhHhHHHHHHHhccchhhhhhhccc
Confidence 55778899999999999987776644 33444444444 6788999999999999997766 78999987777767
Q ss_pred cccccccchhhhhHhhhcc-eEEEEecCCCCCceEEEEe-c---C--ccccc--ccccCCCCCceEEehhhcccchhhhc
Q psy1955 363 ISTFGFRGEALASISHVAH-LTIITKTKTSPCAYRASYI-D---S--KLKDP--IKPCAGNQGTQIIAEDLFYNIPTRRK 433 (512)
Q Consensus 363 ~~t~GfRGeALaSi~~~s~-l~I~T~~~~~~~~~~~~~~-~---~--~~~~~--~~~~~~~~GTtV~V~~lF~n~PvRrk 433 (512)
..-+|-.|-.|+|....+. +.|+|+|.++..++..... + + .++.. ...-...+||+|++. +=.+++.+++
T Consensus 111 qqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~~kNEp~Iv~r~~~~~~~~~hGT~Vel~-~~~~~~~~~~ 189 (538)
T COG1389 111 QQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDVQKNEPEIVERGEVENPGGWHGTRVELE-LKGVWYRAKR 189 (538)
T ss_pred cccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecCCCCcchhhhcccccCCCCCCceEEEEE-ecccchhhcc
Confidence 7789999999999999886 9999999987666654432 1 1 11111 122244699999982 2222222211
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCeEEEEEECCccce
Q psy1955 434 ALKQPSEEYNKIADVVSRYAVHNPHVGFTLKKQNENLA 471 (512)
Q Consensus 434 ~~~~~~~e~~~i~~~l~~yaL~~p~v~f~l~~~~~~~~ 471 (512)
+.+.+.|.+-|+++|+.++.|...+..+.
T Consensus 190 ---------qgi~eYlkrtaiinPhA~I~l~dPdG~~~ 218 (538)
T COG1389 190 ---------QGIYEYLKRTAIINPHARIVLKDPDGNLV 218 (538)
T ss_pred ---------cCHHHHHHHHhhcCCceEEEEECCCCcEE
Confidence 12668899999999999999998766543
No 46
>PRK14083 HSP90 family protein; Provisional
Probab=98.82 E-value=7.1e-09 Score=113.96 Aligned_cols=112 Identities=23% Similarity=0.364 Sum_probs=83.2
Q ss_pred HHHHHhcCCcccCHHHHHHHHHHccccCCCC----------eEEEEE-EeCCeeeEEEEeCCCCCCHHhHHHH-Hhhccc
Q psy1955 14 VVNRIAAGEVIQRPANALKELLENSLDAKST----------SIQVTV-KQGGLKLLQIQDNGTGIRKEDMDIV-CERFTT 81 (512)
Q Consensus 14 ~~~~i~s~~~i~~~~~~v~eLv~Ns~dA~a~----------~i~i~~-~~~~~~~i~v~DnG~Gi~~~~~~~~-~~~~~t 81 (512)
+++.+. .....++..++.|||+||.||.+. .|.|.+ +.+ ...|.|.|||.||+.+++... +.-+.+
T Consensus 12 ll~ll~-~~LYs~~~iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~d~~-~~~l~I~DnGiGmt~eel~~~l~~ig~S 89 (601)
T PRK14083 12 VIDLLS-RHLYSSPRVYVRELLQNAVDAITARRALDPTAPGRIRIELTDAG-GGTLIVEDNGIGLTEEEVHEFLATIGRS 89 (601)
T ss_pred HHHHHH-HhhcCCcHHHHHHHHHhHHHHHHhhhccCCCCCceEEEEEccCC-CcEEEEEeCCCCCCHHHHHHHHhhhccc
Confidence 445554 446688999999999999999875 677777 443 456999999999999999964 455555
Q ss_pred CCCCCccccccccccCCcchhhhhhhccce-EEEEEecCCCCceEEE
Q psy1955 82 SKLTQFEDLNSISTFGFRGEALASISHVAH-LTIITKTKTSPCAYRW 127 (512)
Q Consensus 82 sK~~~~~d~~~~~~~G~rGeaL~si~~~s~-l~i~S~~~~~~~~~~~ 127 (512)
+|-...-........|..|.+++|...+|+ ++|.||...+..++.|
T Consensus 90 ~k~~~~~~~~~~~~IG~FGIGf~S~F~vad~v~V~Tr~~~~~~~~~W 136 (601)
T PRK14083 90 SKRDENLGFARNDFLGQFGIGLLSCFLVADEIVVVSRSAKDGPAVEW 136 (601)
T ss_pred hhhhhhhcccccccccccccceEEEEEecCEEEEEeccCCCCceEEE
Confidence 553311001123568999999999999995 9999999765667666
No 47
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=98.78 E-value=1.3e-08 Score=107.99 Aligned_cols=95 Identities=21% Similarity=0.351 Sum_probs=77.7
Q ss_pred hHHHHHHhcCCcccCHHHHHHHHHHccccCCC-----CeEEEEE-EeCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCC
Q psy1955 12 ETVVNRIAAGEVIQRPANALKELLENSLDAKS-----TSIQVTV-KQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLT 85 (512)
Q Consensus 12 ~~~~~~i~s~~~i~~~~~~v~eLv~Ns~dA~a-----~~i~i~~-~~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~ 85 (512)
.+.+...+++...+++.++++||++||+||-+ ..|++.+ +.++...|+|.||||||+++..+.+|+++++||-.
T Consensus 413 ~S~l~~~p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~~~~~lvieV~D~G~GI~~~~~~~iFe~G~Stk~~ 492 (537)
T COG3290 413 NSQLPQLPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLSDRGDELVIEVADTGPGIPPEVRDKIFEKGVSTKNT 492 (537)
T ss_pred CCcCCCCCCccChHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEecCCEEEEEEeCCCCCCChHHHHHHHhcCccccCC
Confidence 33444555677889999999999999999977 6788888 56778899999999999999999999999999952
Q ss_pred CccccccccccCCcchhhhhhhcc----c-eEEEEEe
Q psy1955 86 QFEDLNSISTFGFRGEALASISHV----A-HLTIITK 117 (512)
Q Consensus 86 ~~~d~~~~~~~G~rGeaL~si~~~----s-~l~i~S~ 117 (512)
+-||.+|+-+.+. + .+++.|.
T Consensus 493 -----------~~rGiGL~Lvkq~V~~~~G~I~~~s~ 518 (537)
T COG3290 493 -----------GGRGIGLYLVKQLVERLGGSIEVESE 518 (537)
T ss_pred -----------CCCchhHHHHHHHHHHcCceEEEeeC
Confidence 3578888755544 3 6888887
No 48
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=98.62 E-value=3.7e-08 Score=105.14 Aligned_cols=60 Identities=35% Similarity=0.559 Sum_probs=53.2
Q ss_pred cCHHHHHHHHHHccccCCCC----eEEEEE-EeCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCC
Q psy1955 25 QRPANALKELLENSLDAKST----SIQVTV-KQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKL 84 (512)
Q Consensus 25 ~~~~~~v~eLv~Ns~dA~a~----~i~i~~-~~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~ 84 (512)
.++.+|+-|||.||+||-+. .|.|.. ..++...|.|.|||+||+++-+..+|+||+|||-
T Consensus 496 iRLeQVLvNLl~NALDA~~~~~~~~i~i~~~~~~~~v~l~VrDnGpGi~~e~~~~lFePF~TtK~ 560 (603)
T COG4191 496 IRLEQVLVNLLQNALDAMAGQEDRRLSIRAQREGGQVVLTVRDNGPGIAPEALPHLFEPFFTTKP 560 (603)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCCeEEEEEccCCCCCCHHHHHhhcCCccccCc
Confidence 57999999999999999764 677777 4566678999999999999999999999999994
No 49
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=98.62 E-value=8.9e-08 Score=82.23 Aligned_cols=88 Identities=28% Similarity=0.434 Sum_probs=68.2
Q ss_pred cCHHHHHHHHHHccccCCCC--eEEEEEE-eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCCcch
Q psy1955 25 QRPANALKELLENSLDAKST--SIQVTVK-QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFRGE 101 (512)
Q Consensus 25 ~~~~~~v~eLv~Ns~dA~a~--~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~rGe 101 (512)
..+..++.||++||+++... .|.|.+. .++...|+|.|||.||++++++.++.++++++.. ....+-.|.
T Consensus 4 ~~l~~il~~ll~Na~~~~~~~~~I~i~~~~~~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~~-------~~~~~g~Gl 76 (111)
T PF02518_consen 4 DRLRQILSELLDNAIKHSPEGGKIDITIEEDDDHLSIEISDNGVGIPPEELEKLFEPFFTSDKS-------ETSISGHGL 76 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEESSSSTTHHHHHHHCSTTSHSSSS-------SGGSSSSSH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEEEEEecCeEEEEEEeccccccccccccchhhccccccc-------ccccCCCCh
Confidence 45788999999999998766 8998885 4567789999999999999999999999998751 123333677
Q ss_pred hhhhhhccc-----eEEEEEecC
Q psy1955 102 ALASISHVA-----HLTIITKTK 119 (512)
Q Consensus 102 aL~si~~~s-----~l~i~S~~~ 119 (512)
+|+....++ ++.+.+...
T Consensus 77 GL~~~~~~~~~~~g~l~~~~~~~ 99 (111)
T PF02518_consen 77 GLYIVKQIAERHGGELTIESSEG 99 (111)
T ss_dssp HHHHHHHHHHHTTEEEEEEEETT
T ss_pred HHHHHHHHHHHCCCEEEEEEcCC
Confidence 775555443 577777753
No 50
>PTZ00130 heat shock protein 90; Provisional
Probab=98.38 E-value=3.2e-07 Score=102.62 Aligned_cols=111 Identities=25% Similarity=0.393 Sum_probs=75.6
Q ss_pred HHHHhcCCcccCHHHHHHHHHHccccCCC----------------CeEEEEEEeC-CeeeEEEEeCCCCCCHHhHHHHHh
Q psy1955 15 VNRIAAGEVIQRPANALKELLENSLDAKS----------------TSIQVTVKQG-GLKLLQIQDNGTGIRKEDMDIVCE 77 (512)
Q Consensus 15 ~~~i~s~~~i~~~~~~v~eLv~Ns~dA~a----------------~~i~i~~~~~-~~~~i~v~DnG~Gi~~~~~~~~~~ 77 (512)
++.|. +-...+....|+|||.||.||.+ +...|+|..+ ....++|.|||.||+++++..-+-
T Consensus 78 ldiii-~sLYS~keIFLRELISNAsDAldKlr~~~lt~~~~~~~~~~~~I~I~~D~~~~tLtI~DnGIGMT~eEl~~nLg 156 (814)
T PTZ00130 78 MDIIV-NSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTGIGMTKEDLINNLG 156 (814)
T ss_pred HHHHh-hccCCCCCceeehHhhhHHHHHHHHHHHHcCCchhcCCCCCceEEEEECCCCCEEEEEECCCCCCHHHHHHHhh
Confidence 44444 34668888899999999999975 2445555322 233689999999999999875433
Q ss_pred hcccCCCCCc-ccc----ccccccCCcchhhhhhhccce-EEEEEecCCCCceEEE
Q psy1955 78 RFTTSKLTQF-EDL----NSISTFGFRGEALASISHVAH-LTIITKTKTSPCAYRW 127 (512)
Q Consensus 78 ~~~tsK~~~~-~d~----~~~~~~G~rGeaL~si~~~s~-l~i~S~~~~~~~~~~~ 127 (512)
.-+.|--..| +.+ ....-+|-.|.+++|...||+ |+|.||..+ ..+|.|
T Consensus 157 TIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVAdkV~V~Trs~~-~~~~~W 211 (814)
T PTZ00130 157 TIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNN-DEQYIW 211 (814)
T ss_pred hhcccccHHHHHHhhccCCCcccccccccchhheeeecCEEEEEEcCCC-CceEEE
Confidence 3333211111 011 123568899999999999995 999999865 556766
No 51
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=98.34 E-value=7.1e-07 Score=99.54 Aligned_cols=100 Identities=28% Similarity=0.382 Sum_probs=70.4
Q ss_pred cccCHHHHHHHHHHccccCCC----------------CeEEEEE--EeCCeeeEEEEeCCCCCCHHhHHHHHhhcccC--
Q psy1955 23 VIQRPANALKELLENSLDAKS----------------TSIQVTV--KQGGLKLLQIQDNGTGIRKEDMDIVCERFTTS-- 82 (512)
Q Consensus 23 ~i~~~~~~v~eLv~Ns~dA~a----------------~~i~i~~--~~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~ts-- 82 (512)
.-.+....++|||.||.||.. ..+.|.+ +..+ ..++|.|||.||+++|+..-+..-+.|
T Consensus 22 lYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~-~~L~I~DnGiGMt~edl~~~LgtIa~SGt 100 (701)
T PTZ00272 22 FYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKEN-KTLTVEDNGIGMTKADLVNNLGTIARSGT 100 (701)
T ss_pred ccCCccHhHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEcCCC-CEEEEEECCCCCCHHHHHHHhhhhhhcch
Confidence 556678889999999999942 2344555 4333 469999999999999977544222222
Q ss_pred C-----CCCccccccccccCCcchhhhhhhccce-EEEEEecCCCCceEEE
Q psy1955 83 K-----LTQFEDLNSISTFGFRGEALASISHVAH-LTIITKTKTSPCAYRW 127 (512)
Q Consensus 83 K-----~~~~~d~~~~~~~G~rGeaL~si~~~s~-l~i~S~~~~~~~~~~~ 127 (512)
| +..- ......|-.|.+.+|...+|+ |+|.||..+ ..+|.|
T Consensus 101 ~~f~~~~~~~---~~~~~iGqFGvGfyS~Fmvad~V~V~Srs~~-~~~~~W 147 (701)
T PTZ00272 101 KAFMEALEAG---GDMSMIGQFGVGFYSAYLVADRVTVTSKNNS-DESYVW 147 (701)
T ss_pred HHHHHHhhcc---CCccccCCCCcceEEEEEeccEEEEEEecCC-CceEEE
Confidence 1 1111 123578889999999999995 999999865 467777
No 52
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=98.26 E-value=3.2e-05 Score=86.07 Aligned_cols=109 Identities=23% Similarity=0.288 Sum_probs=75.3
Q ss_pred cccccChHHHHHHhcCCccc-----CHHHHHHHHHHcccc----CCCCeEEEEEEeCCeeeEEEEeCCCCCCHHhHH---
Q psy1955 6 KIKKLDETVVNRIAAGEVIQ-----RPANALKELLENSLD----AKSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMD--- 73 (512)
Q Consensus 6 ~i~~l~~~~~~~i~s~~~i~-----~~~~~v~eLv~Ns~d----A~a~~i~i~~~~~~~~~i~v~DnG~Gi~~~~~~--- 73 (512)
.|+.|..---=+.+-|..|. .+..++.|+|+||+| ..|+.|.|.++.++ .|+|.|||.|||.+..+
T Consensus 9 ~i~~L~glE~VRkRPgMYIGst~~~GL~hlv~EIvdNavDE~~ag~~~~I~V~i~~dg--sitV~DnGrGIPv~~h~~~~ 86 (637)
T TIGR01058 9 AIKILEGLDAVRKRPGMYIGSTDSKGLHHLVWEIVDNSVDEVLAGYADNITVTLHKDN--SITVQDDGRGIPTGIHQDGN 86 (637)
T ss_pred HCeeecccHHHhcCCCCeECCCCcchhheehhhhhcchhhhhhcCCCcEEEEEEcCCC--eEEEEECCCcccCcccCcCC
Confidence 36666544444555666664 457899999999999 45899999998665 59999999999974321
Q ss_pred -----HHH-hhcccCCCCCccccccccccCCcchhhhhhhccce-EEEEEecC
Q psy1955 74 -----IVC-ERFTTSKLTQFEDLNSISTFGFRGEALASISHVAH-LTIITKTK 119 (512)
Q Consensus 74 -----~~~-~~~~tsK~~~~~d~~~~~~~G~rGeaL~si~~~s~-l~i~S~~~ 119 (512)
.++ .-|+.+|+.+ -.---+-|..|.+++...++|. ++|.++..
T Consensus 87 ~~~~E~v~t~LhaGgkfd~---~~ykvSGGlhGvG~svvNAlS~~~~V~v~r~ 136 (637)
T TIGR01058 87 ISTVETVFTVLHAGGKFDQ---GGYKTAGGLHGVGASVVNALSSWLEVTVKRD 136 (637)
T ss_pred CccceeEEEEecccCcCCC---CcccccCCcccccccccceeeceEEEEEEEC
Confidence 112 2233455432 1111345999999999999996 88888743
No 53
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=98.25 E-value=2.5e-06 Score=91.18 Aligned_cols=84 Identities=23% Similarity=0.303 Sum_probs=63.5
Q ss_pred HHHHHHHHHHccccCCCCe------EEEEE-EeCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCCc
Q psy1955 27 PANALKELLENSLDAKSTS------IQVTV-KQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFR 99 (512)
Q Consensus 27 ~~~~v~eLv~Ns~dA~a~~------i~i~~-~~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~r 99 (512)
+.+++.||+.||+++.+.. |.|.. ..++...++|.|||.||+++....+|++|+|+|... .+-.
T Consensus 388 l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~~---------~~G~ 458 (494)
T TIGR02938 388 LRSLFKALVDNAIEAMNIKGWKRRELSITTALNGDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGGS---------RKHI 458 (494)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhcCCCcccCCCC---------CCCC
Confidence 7889999999999985443 66655 345567899999999999999999999999998542 2235
Q ss_pred chhhhhhhcc-----ceEEEEEecC
Q psy1955 100 GEALASISHV-----AHLTIITKTK 119 (512)
Q Consensus 100 GeaL~si~~~-----s~l~i~S~~~ 119 (512)
|.+|+-...+ +.+.+.|...
T Consensus 459 GlGL~i~~~iv~~~gG~i~~~s~~~ 483 (494)
T TIGR02938 459 GMGLSVAQEIVADHGGIIDLDDDYS 483 (494)
T ss_pred cccHHHHHHHHHHcCCEEEEEECCC
Confidence 6666543333 4799988653
No 54
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=1.7e-06 Score=93.75 Aligned_cols=104 Identities=28% Similarity=0.408 Sum_probs=73.2
Q ss_pred cccCHHHHHHHHHHccccCC------------------CCeEEEEEEeCCeeeEEEEeCCCCCCHHhHHH-HHhhcccCC
Q psy1955 23 VIQRPANALKELLENSLDAK------------------STSIQVTVKQGGLKLLQIQDNGTGIRKEDMDI-VCERFTTSK 83 (512)
Q Consensus 23 ~i~~~~~~v~eLv~Ns~dA~------------------a~~i~i~~~~~~~~~i~v~DnG~Gi~~~~~~~-~~~~~~tsK 83 (512)
+-.+..-.++|||.||-||- .-.|+|.++.+. ..++|.|||.||+++|+.. ++.--.+++
T Consensus 24 lYSnKeIFLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~Dk~~-kTLtI~DNGIGMT~~Ev~~~LgTIAkSgT 102 (623)
T COG0326 24 LYSNKEIFLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFDKDN-KTLTISDNGIGMTKDEVIENLGTIAKSGT 102 (623)
T ss_pred ccCCcHHHHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEcccC-CEEEEEeCCCCCCHHHHHHHHHHhhhccH
Confidence 45667788999999999981 234555555543 4699999999999999874 332222221
Q ss_pred ---CCCc-cccccccccCCcchhhhhhhccce-EEEEEecCCCCceEEE
Q psy1955 84 ---LTQF-EDLNSISTFGFRGEALASISHVAH-LTIITKTKTSPCAYRW 127 (512)
Q Consensus 84 ---~~~~-~d~~~~~~~G~rGeaL~si~~~s~-l~i~S~~~~~~~~~~~ 127 (512)
+... +|-...+-.|-.|.+++|-.-||+ |+|.||.++++.+|.|
T Consensus 103 ~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVAdkV~V~T~~~~~~~~~~W 151 (623)
T COG0326 103 KEFLESLSEDQKDSDLIGQFGVGFYSAFMVADKVTVITRSAGEDEAYHW 151 (623)
T ss_pred HHHHHHhccccccccccccccchhhheeeeeeeEEEEeccCCCCcceEE
Confidence 1110 011233558889999999999995 9999999998888877
No 55
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=98.23 E-value=3.3e-06 Score=92.55 Aligned_cols=85 Identities=19% Similarity=0.306 Sum_probs=65.7
Q ss_pred cCHHHHHHHHHHccccC------CCCeEEEEEE-eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccC
Q psy1955 25 QRPANALKELLENSLDA------KSTSIQVTVK-QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFG 97 (512)
Q Consensus 25 ~~~~~~v~eLv~Ns~dA------~a~~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G 97 (512)
..+.+++.||++||++| +...|.|.+. .++...+.|.|||+||++++.+.+|++|||+|-.. .|
T Consensus 431 ~~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk~~~---------~~ 501 (545)
T PRK15053 431 TEFAAIVGNLLDNAFEASLRSDEGNKIVELFLSDEGDDVVIEVADQGCGVPESLRDKIFEQGVSTRADE---------PG 501 (545)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEEECCCEEEEEEEeCCCCcCHHHHHHHhCCCCCCCCCC---------CC
Confidence 35778999999999998 3467888774 44556799999999999999999999999987432 24
Q ss_pred Ccchhhhhhhcc-----ceEEEEEec
Q psy1955 98 FRGEALASISHV-----AHLTIITKT 118 (512)
Q Consensus 98 ~rGeaL~si~~~-----s~l~i~S~~ 118 (512)
-+|.+|+-+..+ +.+++.|..
T Consensus 502 g~GlGL~ivk~iv~~~~G~i~v~s~~ 527 (545)
T PRK15053 502 EHGIGLYLIASYVTRCGGVITLEDND 527 (545)
T ss_pred CceeCHHHHHHHHHHcCCEEEEEECC
Confidence 457777655444 468888764
No 56
>PRK10364 sensor protein ZraS; Provisional
Probab=98.19 E-value=5.1e-06 Score=89.23 Aligned_cols=82 Identities=22% Similarity=0.370 Sum_probs=62.9
Q ss_pred cCHHHHHHHHHHccccCC--CCeEEEEEE-eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCCcch
Q psy1955 25 QRPANALKELLENSLDAK--STSIQVTVK-QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFRGE 101 (512)
Q Consensus 25 ~~~~~~v~eLv~Ns~dA~--a~~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~rGe 101 (512)
..+.+++.||++||++|. ...|.|.+. .++...|.|.|||+||+++.++.+|++|+++|-. -+|.
T Consensus 347 ~~l~~il~NLl~NA~k~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~k~~------------g~Gl 414 (457)
T PRK10364 347 DRLTQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQLEAIFTPYFTTKAE------------GTGL 414 (457)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCeEEEEEEEeCCeEEEEEEECCCCCCHHHHHHHhCccccCCCC------------CCcc
Confidence 357899999999999984 456777774 3445679999999999999999999999988731 2466
Q ss_pred hhhhhhcc-----ceEEEEEec
Q psy1955 102 ALASISHV-----AHLTIITKT 118 (512)
Q Consensus 102 aL~si~~~-----s~l~i~S~~ 118 (512)
+|+-+..+ +++++.|..
T Consensus 415 GL~iv~~~v~~~gG~i~i~s~~ 436 (457)
T PRK10364 415 GLAVVHNIVEQHGGTIQVASQE 436 (457)
T ss_pred cHHHHHHHHHHCCCEEEEEeCC
Confidence 66544443 368888764
No 57
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=98.18 E-value=2e-06 Score=77.39 Aligned_cols=101 Identities=22% Similarity=0.366 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCceeeEeecCCCCCCCcchhhhhhhccccCCccccccccccccccc
Q psy1955 289 IERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGF 368 (512)
Q Consensus 289 ~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~~~~~~~TSKi~~~~dl~~~~t~Gf 368 (512)
..+|+++|.|++++..+. +.|.|.....+...+.|.|||.||+++++..++..+.++|... ....++|+
T Consensus 4 ~~al~ElI~Ns~DA~a~~-------I~I~i~~~~~~~~~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~----~~~~~~G~ 72 (137)
T PF13589_consen 4 EDALRELIDNSIDAGATN-------IKISIDEDKKGERYIVIEDNGEGMSREDLESFFRIGRSSKKSE----KDRQSIGR 72 (137)
T ss_dssp THHHHHHHHHHHHHHHHH-------EEEEEEEETTTTTEEEEEESSS---HHHHHHHTTCHHTHHHHH----HHGGGGGG
T ss_pred HHHHHHHHHHHHHccCCE-------EEEEEEcCCCCCcEEEEEECCcCCCHHHHHHhccccCCCCCch----hhhhcCCC
Confidence 357899999999987554 2245554444556899999999999999999887777777521 12356788
Q ss_pred cchh--hhhHhhhcceEEEEecCCCCCceEEEEe
Q psy1955 369 RGEA--LASISHVAHLTIITKTKTSPCAYRASYI 400 (512)
Q Consensus 369 RGeA--LaSi~~~s~l~I~T~~~~~~~~~~~~~~ 400 (512)
+|.. +|+++....++|+|++.+....+.+.+.
T Consensus 73 ~G~G~k~A~~~~~~~~~v~S~~~~~~~~~~~~~~ 106 (137)
T PF13589_consen 73 FGIGLKLAIFSLGDRVEVISKTNGESFTYTIDYD 106 (137)
T ss_dssp GTSGCGGGGGGTEEEEEEEEESTTSSSEEEEEEE
T ss_pred cceEHHHHHHHhcCEEEEEEEECCCCcEEEEEEe
Confidence 7765 6667666689999999988777665554
No 58
>PRK09303 adaptive-response sensory kinase; Validated
Probab=98.11 E-value=9.4e-06 Score=85.35 Aligned_cols=86 Identities=17% Similarity=0.237 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHccccCCCC--eEEEEE--EeCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCCcch
Q psy1955 26 RPANALKELLENSLDAKST--SIQVTV--KQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFRGE 101 (512)
Q Consensus 26 ~~~~~v~eLv~Ns~dA~a~--~i~i~~--~~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~rGe 101 (512)
.+.+++.|||.||+++... .|.|.+ ..++...|.|.|||+||++++.+.+|++|++.+-.. ..+-.|.
T Consensus 272 ~l~qvl~NLl~NAik~~~~~~~I~i~~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~~~--------~~~G~GL 343 (380)
T PRK09303 272 RIRQVLLNLLDNAIKYTPEGGTITLSMLHRTTQKVQVSICDTGPGIPEEEQERIFEDRVRLPRDE--------GTEGYGI 343 (380)
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEEecCCCEEEEEEEEcCCCCCHHHHHHHccCceeCCCCC--------CCCcccc
Confidence 4778999999999998764 566655 244556799999999999999999999999887421 1123466
Q ss_pred hhhhhhcc-----ceEEEEEecC
Q psy1955 102 ALASISHV-----AHLTIITKTK 119 (512)
Q Consensus 102 aL~si~~~-----s~l~i~S~~~ 119 (512)
+|+-...+ +++++.|...
T Consensus 344 GL~i~~~iv~~~gG~i~v~s~~~ 366 (380)
T PRK09303 344 GLSVCRRIVRVHYGQIWVDSEPG 366 (380)
T ss_pred cHHHHHHHHHHcCCEEEEEecCC
Confidence 66533222 4699988754
No 59
>PRK10604 sensor protein RstB; Provisional
Probab=98.10 E-value=1e-05 Score=86.49 Aligned_cols=87 Identities=24% Similarity=0.345 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHccccCCCCeEEEEEE-eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCCcchhhh
Q psy1955 26 RPANALKELLENSLDAKSTSIQVTVK-QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFRGEALA 104 (512)
Q Consensus 26 ~~~~~v~eLv~Ns~dA~a~~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~rGeaL~ 104 (512)
.+..++.|||+||+.++...|.|.+. .++...|.|.|||+||++++++.+|++|++..... ...+ |-.|.+|+
T Consensus 319 ~l~~vl~NLl~NAik~~~~~I~I~~~~~~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~~~~-----~~~~-~g~GLGL~ 392 (433)
T PRK10604 319 LMERVLDNLLNNALRYAHSRVRVSLLLDGNQACLIVEDDGPGIPPEERERVFEPFVRLDPSR-----DRAT-GGCGLGLA 392 (433)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEEEECCEEEEEEEEcCCCCCHHHHhhcCCCCccCCCCC-----CCCC-CCccchHH
Confidence 36789999999999999889988884 44556799999999999999999999999754221 1112 23366665
Q ss_pred hhhcc-----ceEEEEEec
Q psy1955 105 SISHV-----AHLTIITKT 118 (512)
Q Consensus 105 si~~~-----s~l~i~S~~ 118 (512)
-...+ +++++.+..
T Consensus 393 ivk~i~~~~gG~i~v~s~~ 411 (433)
T PRK10604 393 IVHSIALAMGGSVNCDESE 411 (433)
T ss_pred HHHHHHHHCCCEEEEEecC
Confidence 43333 368888764
No 60
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=98.07 E-value=1.1e-05 Score=86.00 Aligned_cols=88 Identities=24% Similarity=0.317 Sum_probs=63.9
Q ss_pred CHHHHHHHHHHccccCCCC--eEEEEEE-eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCCcchh
Q psy1955 26 RPANALKELLENSLDAKST--SIQVTVK-QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFRGEA 102 (512)
Q Consensus 26 ~~~~~v~eLv~Ns~dA~a~--~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~rGea 102 (512)
.+.+++.||++||+++... .|.|.+. .++...|.|.|||+||++++++.+|++|++.+-... ...|-.|.+
T Consensus 317 ~l~~vl~NLl~NAik~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~------~~~~G~GLG 390 (430)
T PRK11006 317 QLRSAISNLVYNAVNHTPEGTHITVRWQRVPQGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARS------RQTGGSGLG 390 (430)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHhccCcccccCCCC------CCCCCCchH
Confidence 4789999999999998653 5666663 344567999999999999999999999998753211 112345677
Q ss_pred hhhhhcc-----ceEEEEEecC
Q psy1955 103 LASISHV-----AHLTIITKTK 119 (512)
Q Consensus 103 L~si~~~-----s~l~i~S~~~ 119 (512)
|+-...+ +.+++.|...
T Consensus 391 L~ivk~iv~~~gG~i~i~s~~~ 412 (430)
T PRK11006 391 LAIVKHALSHHDSRLEIESEVG 412 (430)
T ss_pred HHHHHHHHHHCCCEEEEEecCC
Confidence 7544333 4688888753
No 61
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=98.06 E-value=2e-05 Score=83.75 Aligned_cols=85 Identities=19% Similarity=0.262 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHccccCCC--CeEEEEEE-eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCCcchh
Q psy1955 26 RPANALKELLENSLDAKS--TSIQVTVK-QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFRGEA 102 (512)
Q Consensus 26 ~~~~~v~eLv~Ns~dA~a--~~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~rGea 102 (512)
.+..++.||+.||++++. ..|.|.+. .++...|+|.|||+||+++.+..+|++||+++..... ..+-.|.+
T Consensus 353 ~l~~~~~nll~Nai~~~~~~~~I~i~~~~~~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~~~~------~~~g~GlG 426 (457)
T TIGR01386 353 MFRRAISNLLSNALRHTPDGGTITVRIERRSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDPARSN------SGEGTGLG 426 (457)
T ss_pred HHHHHHHHHHHHHHHcCCCCceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhccccccCCcccCC------CCCCcccc
Confidence 366789999999999874 46788774 4455679999999999999999999999998754311 12335666
Q ss_pred hhhhhcc-----ceEEEEE
Q psy1955 103 LASISHV-----AHLTIIT 116 (512)
Q Consensus 103 L~si~~~-----s~l~i~S 116 (512)
|+-+..+ +++++.+
T Consensus 427 L~i~~~~~~~~~G~~~~~~ 445 (457)
T TIGR01386 427 LAIVRSIMEAHGGRASAES 445 (457)
T ss_pred HHHHHHHHHHCCCEEEEEe
Confidence 6654443 3688887
No 62
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=98.03 E-value=1.6e-05 Score=86.59 Aligned_cols=82 Identities=22% Similarity=0.402 Sum_probs=62.6
Q ss_pred cCHHHHHHHHHHccccCC----CCeEEEEEE-eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCCc
Q psy1955 25 QRPANALKELLENSLDAK----STSIQVTVK-QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFR 99 (512)
Q Consensus 25 ~~~~~~v~eLv~Ns~dA~----a~~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~r 99 (512)
..+.+++.||++||++|. ...|.|.+. .++...|.|.|||+||++++.+.+|++|+++|-. -.
T Consensus 432 ~~l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~iF~~~~~~~~~------------g~ 499 (542)
T PRK11086 432 HELITILGNLIENALEAVGGEEGGEISVSLHYRNGWLHCEVSDDGPGIAPDEIDAIFDKGYSTKGS------------NR 499 (542)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHhCCCccCCC------------CC
Confidence 357899999999999984 246777774 4555679999999999999999999999998732 23
Q ss_pred chhhhhhhcc-----ceEEEEEec
Q psy1955 100 GEALASISHV-----AHLTIITKT 118 (512)
Q Consensus 100 GeaL~si~~~-----s~l~i~S~~ 118 (512)
|.+|+-+..+ +++.+.|..
T Consensus 500 GlGL~iv~~iv~~~~G~i~v~s~~ 523 (542)
T PRK11086 500 GVGLYLVKQSVENLGGSIAVESEP 523 (542)
T ss_pred cCcHHHHHHHHHHcCCEEEEEeCC
Confidence 6666544333 468888864
No 63
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=97.98 E-value=3.3e-05 Score=79.94 Aligned_cols=83 Identities=19% Similarity=0.369 Sum_probs=61.3
Q ss_pred HHHHHHHHHHccccCCC--CeEEEEEE-eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCCcchhh
Q psy1955 27 PANALKELLENSLDAKS--TSIQVTVK-QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFRGEAL 103 (512)
Q Consensus 27 ~~~~v~eLv~Ns~dA~a--~~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~rGeaL 103 (512)
+..++.+||+||+.+.. +.|.|.+. .++...|.|.|||.||++++++.++++|++.+- ..+-.|.+|
T Consensus 248 l~~il~nLi~NA~k~~~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----------~~~g~GlGL 317 (356)
T PRK10755 248 LRLLLRNLVENAHRYSPEGSTITIKLSQEDGGAVLAVEDEGPGIDESKCGELSKAFVRMDS----------RYGGIGLGL 317 (356)
T ss_pred HHHHHHHHHHHHHhhCCCCCcEEEEEEEcCCEEEEEEEECCCCCCHHHHHHhCCCeEeCCC----------CCCCcCHHH
Confidence 46899999999999863 56777773 445567999999999999999999999985431 112346777
Q ss_pred hhhhcc-----ceEEEEEecC
Q psy1955 104 ASISHV-----AHLTIITKTK 119 (512)
Q Consensus 104 ~si~~~-----s~l~i~S~~~ 119 (512)
+-...+ +.+++.|...
T Consensus 318 ~i~~~i~~~~gg~i~i~s~~~ 338 (356)
T PRK10755 318 SIVSRITQLHHGQFFLQNRQE 338 (356)
T ss_pred HHHHHHHHHCCCEEEEEECCC
Confidence 543333 3688888764
No 64
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=97.94 E-value=3.3e-05 Score=82.43 Aligned_cols=87 Identities=20% Similarity=0.262 Sum_probs=63.5
Q ss_pred HHHHHHHHHHccccCCCCeEEEEEE-eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCCcchhhhh
Q psy1955 27 PANALKELLENSLDAKSTSIQVTVK-QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFRGEALAS 105 (512)
Q Consensus 27 ~~~~v~eLv~Ns~dA~a~~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~rGeaL~s 105 (512)
+..++.|||+||+.++.+.|.|.+. .++...++|.|||+||++++++.+|++|++.+-... ...+-.|.+|+-
T Consensus 354 l~~~l~nli~NA~~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~------~~~~g~GlGL~i 427 (461)
T PRK09470 354 LASALENIVRNALRYSHTKIEVAFSVDKDGLTITVDDDGPGVPEEEREQIFRPFYRVDEARD------RESGGTGLGLAI 427 (461)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEEECCEEEEEEEECCCCCCHHHHHHhcCCCccCCcccC------CCCCCcchhHHH
Confidence 5678999999999999988888884 455567999999999999999999999997652211 111233566654
Q ss_pred hhc-----cceEEEEEecC
Q psy1955 106 ISH-----VAHLTIITKTK 119 (512)
Q Consensus 106 i~~-----~s~l~i~S~~~ 119 (512)
... -+.+.+.|...
T Consensus 428 v~~~v~~~~G~l~~~s~~~ 446 (461)
T PRK09470 428 VENAIQQHRGWVKAEDSPL 446 (461)
T ss_pred HHHHHHHCCCEEEEEECCC
Confidence 322 24688887643
No 65
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=97.93 E-value=3.3e-05 Score=82.70 Aligned_cols=88 Identities=22% Similarity=0.303 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHccccCCCC--eEEEEEE-eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCCcchh
Q psy1955 26 RPANALKELLENSLDAKST--SIQVTVK-QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFRGEA 102 (512)
Q Consensus 26 ~~~~~v~eLv~Ns~dA~a~--~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~rGea 102 (512)
.+.+++.|||+||+.+... .|.|.+. .++...|.|.|||.||++++++.+|++|++++-... ...|-.|.+
T Consensus 352 ~l~qvl~nll~NAi~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~~~------~~~~g~GlG 425 (466)
T PRK10549 352 RLMQLFNNLLENSLRYTDSGGSLHISAEQRDKTLRLTFADSAPGVSDEQLQKLFERFYRTEGSRN------RASGGSGLG 425 (466)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCEEEEEEEecCCCcCHHHHHHhccCcccCCCCcC------CCCCCCcHH
Confidence 3678999999999998654 5677773 444567999999999999999999999998764321 122345777
Q ss_pred hhhhhcc-----ceEEEEEecC
Q psy1955 103 LASISHV-----AHLTIITKTK 119 (512)
Q Consensus 103 L~si~~~-----s~l~i~S~~~ 119 (512)
|+-...+ +++++.+...
T Consensus 426 L~iv~~i~~~~~G~l~~~s~~~ 447 (466)
T PRK10549 426 LAICLNIVEAHNGRIIAAHSPF 447 (466)
T ss_pred HHHHHHHHHHcCCEEEEEECCC
Confidence 7644433 3688888643
No 66
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=97.91 E-value=3.3e-05 Score=85.63 Aligned_cols=56 Identities=20% Similarity=0.380 Sum_probs=46.7
Q ss_pred HHHHHHHHHHccccCCCCeE--EEEE-EeCCeeeEEEEeCCCCCCHHhHHHHHhhcccC
Q psy1955 27 PANALKELLENSLDAKSTSI--QVTV-KQGGLKLLQIQDNGTGIRKEDMDIVCERFTTS 82 (512)
Q Consensus 27 ~~~~v~eLv~Ns~dA~a~~i--~i~~-~~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~ts 82 (512)
+.+|+-||+|||+.+..+.- .|.. .......+.|.|||+|||+++++.+|++||+-
T Consensus 776 ieQVLiNLleNA~Kyap~~s~I~I~~~~~~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~ 834 (890)
T COG2205 776 IEQVLINLLENALKYAPPGSEIRINAGVERENVVFSVIDEGPGIPEGELERIFDKFYRG 834 (890)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEEEEecceEEEEEEeCCCCCChhHHHHhhhhhhcC
Confidence 57899999999999876554 4444 34456679999999999999999999999986
No 67
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=97.90 E-value=2e-05 Score=78.44 Aligned_cols=61 Identities=25% Similarity=0.467 Sum_probs=53.3
Q ss_pred cCHHHHHHHHHHccccCC-CCeEEEEEEeCC-eeeEEEEeCCCCCCHHhHHHHHhhcccCCCC
Q psy1955 25 QRPANALKELLENSLDAK-STSIQVTVKQGG-LKLLQIQDNGTGIRKEDMDIVCERFTTSKLT 85 (512)
Q Consensus 25 ~~~~~~v~eLv~Ns~dA~-a~~i~i~~~~~~-~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~ 85 (512)
..+.+++.+|+.||++|. ...|.|.+...+ ...+.|.|||+||+++.++.+|++|+|+|..
T Consensus 227 ~~l~~vl~nLi~NAi~~~~~~~i~i~~~~~~~~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~ 289 (336)
T COG0642 227 ERLRQVLVNLLSNAIKYTPGGEITISVRQDDEQVTISVEDTGPGIPEEELERIFEPFFRTDKS 289 (336)
T ss_pred HHHHHHHHHHHHHHhccCCCCeEEEEEEecCCeEEEEEEcCCCCCCHHHHHHhccCeeccCCC
Confidence 347889999999999999 588999985443 5679999999999999999999999999864
No 68
>PRK10815 sensor protein PhoQ; Provisional
Probab=97.90 E-value=3.9e-05 Score=83.41 Aligned_cols=83 Identities=12% Similarity=0.261 Sum_probs=63.3
Q ss_pred HHHHHHHHHHccccCCCCeEEEEEE-eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCCcchhhhh
Q psy1955 27 PANALKELLENSLDAKSTSIQVTVK-QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFRGEALAS 105 (512)
Q Consensus 27 ~~~~v~eLv~Ns~dA~a~~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~rGeaL~s 105 (512)
+..++.||++||+++....|.|.+. .++...|.|.|||+||++++++.+|++|++.+-.. . | .|.+|+-
T Consensus 379 l~~vl~NLi~NAik~~~~~i~I~~~~~~~~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~~~-------~--G-~GLGL~I 448 (485)
T PRK10815 379 FMEVMGNVLDNACKYCLEFVEISARQTDEHLHIVVEDDGPGIPESKRELIFDRGQRADTLR-------P--G-QGLGLSV 448 (485)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhCCcccCCCCC-------C--C-cchhHHH
Confidence 6789999999999999888888884 45556799999999999999999999998654211 1 2 3666765
Q ss_pred hhcc-----ceEEEEEecC
Q psy1955 106 ISHV-----AHLTIITKTK 119 (512)
Q Consensus 106 i~~~-----s~l~i~S~~~ 119 (512)
...+ +++.+.|...
T Consensus 449 vk~iv~~~gG~i~v~s~~~ 467 (485)
T PRK10815 449 AREITEQYEGKISAGDSPL 467 (485)
T ss_pred HHHHHHHcCCEEEEEECCC
Confidence 4444 4688887753
No 69
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=97.89 E-value=7e-05 Score=61.22 Aligned_cols=84 Identities=24% Similarity=0.439 Sum_probs=58.1
Q ss_pred HHHHHHHHHHccccCCC---CeEEEEEEe-CCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCCcchh
Q psy1955 27 PANALKELLENSLDAKS---TSIQVTVKQ-GGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFRGEA 102 (512)
Q Consensus 27 ~~~~v~eLv~Ns~dA~a---~~i~i~~~~-~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~rGea 102 (512)
+..++.||++||+++++ ..|.|.+.. ++...+.|.|+|.||++..++.++.++.... .....+..|.+
T Consensus 1 l~~~~~~ll~Na~~~~~~~~~~v~i~~~~~~~~~~v~i~d~g~g~~~~~~~~~~~~~~~~~--------~~~~~~~~g~g 72 (103)
T cd00075 1 LQQVLLNLLSNAIKHTPEGGGRITISVERDGDHLEIRVEDNGPGIPEEDLERIFERFSDGS--------RSRKGGGTGLG 72 (103)
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEEEEecCCEEEEEEEeCCCCCCHHHHHHHhhhhhcCC--------CCCCCCccccC
Confidence 35789999999999987 566777743 3456799999999999999998887761111 11223455667
Q ss_pred hhhhhccc-----eEEEEEec
Q psy1955 103 LASISHVA-----HLTIITKT 118 (512)
Q Consensus 103 L~si~~~s-----~l~i~S~~ 118 (512)
|+.+..++ .+++.+..
T Consensus 73 l~~~~~~~~~~~g~~~~~~~~ 93 (103)
T cd00075 73 LSIVKKLVELHGGRIEVESEP 93 (103)
T ss_pred HHHHHHHHHHcCCEEEEEeCC
Confidence 76655554 56666554
No 70
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=97.87 E-value=4.8e-05 Score=80.76 Aligned_cols=85 Identities=21% Similarity=0.317 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHccccCCCCeEEEEEE-eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCCcchhhh
Q psy1955 26 RPANALKELLENSLDAKSTSIQVTVK-QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFRGEALA 104 (512)
Q Consensus 26 ~~~~~v~eLv~Ns~dA~a~~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~rGeaL~ 104 (512)
.+..++.||++||+.++...|.|.+. .++...|+|.|||.||++++++.++++|+...... .. +-.|.+|+
T Consensus 331 ~l~~il~NLl~NA~k~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~~~f~~~~~~~-------~~-~g~GlGL~ 402 (435)
T PRK09467 331 AIKRALANLVVNAARYGNGWIKVSSGTEGKRAWFQVEDDGPGIPPEQLKHLFQPFTRGDSAR-------GS-SGTGLGLA 402 (435)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEEecCCEEEEEEEecCCCcCHHHHHHhcCCcccCCCCC-------CC-CCeehhHH
Confidence 35779999999999999999998884 34456799999999999999999999998532111 11 23456665
Q ss_pred hhhcc-----ceEEEEEec
Q psy1955 105 SISHV-----AHLTIITKT 118 (512)
Q Consensus 105 si~~~-----s~l~i~S~~ 118 (512)
-...+ +++++.+..
T Consensus 403 iv~~i~~~~~g~l~i~~~~ 421 (435)
T PRK09467 403 IVKRIVDQHNGKVELGNSE 421 (435)
T ss_pred HHHHHHHHCCCEEEEEECC
Confidence 33332 468887764
No 71
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=97.85 E-value=6.5e-05 Score=80.21 Aligned_cols=92 Identities=23% Similarity=0.303 Sum_probs=66.7
Q ss_pred CHHHHHHHHHHccccCCC--CeEEEEEE-eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCCcchh
Q psy1955 26 RPANALKELLENSLDAKS--TSIQVTVK-QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFRGEA 102 (512)
Q Consensus 26 ~~~~~v~eLv~Ns~dA~a--~~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~rGea 102 (512)
.+..++.||++||+.++. ..|.|.+. .++...|+|.|||.||++++++.+|++|++.+... ...+-.|.+
T Consensus 368 ~l~~vl~nli~Na~~~~~~~~~i~i~~~~~~~~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~~-------~~~~~~GlG 440 (475)
T PRK11100 368 LLRQALGNLLDNAIDFSPEGGTITLSAEVDGEQVALSVEDQGPGIPDYALPRIFERFYSLPRPA-------NGRKSTGLG 440 (475)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHHHHccCCCCC-------CCCCCcchh
Confidence 477899999999999864 57888884 45566799999999999999999999999875421 112345666
Q ss_pred hhhhhcc-----ceEEEEEecCCCCceEEE
Q psy1955 103 LASISHV-----AHLTIITKTKTSPCAYRW 127 (512)
Q Consensus 103 L~si~~~-----s~l~i~S~~~~~~~~~~~ 127 (512)
|+.+-.+ +.+++.|... .|+.+
T Consensus 441 L~i~~~~~~~~~G~i~i~s~~~---~Gt~v 467 (475)
T PRK11100 441 LAFVREVARLHGGEVTLRNRPE---GGVLA 467 (475)
T ss_pred HHHHHHHHHHCCCEEEEEEcCC---CeEEE
Confidence 6544333 3688888653 35554
No 72
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=97.84 E-value=3.8e-05 Score=86.92 Aligned_cols=82 Identities=20% Similarity=0.312 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHccccCCC--CeEEEEEE-eCCeeeEEEEeCCCCCCHHh-HHHHHhhcccCCCCCccccccccccCCcch
Q psy1955 26 RPANALKELLENSLDAKS--TSIQVTVK-QGGLKLLQIQDNGTGIRKED-MDIVCERFTTSKLTQFEDLNSISTFGFRGE 101 (512)
Q Consensus 26 ~~~~~v~eLv~Ns~dA~a--~~i~i~~~-~~~~~~i~v~DnG~Gi~~~~-~~~~~~~~~tsK~~~~~d~~~~~~~G~rGe 101 (512)
.+.+++.||++||+++.. ..|.|.+. .++...|+|.|||+||+++. .+.+|++|+++|- +-.|.
T Consensus 579 ~l~~vl~nLl~NAik~~~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~~------------~G~GL 646 (679)
T TIGR02916 579 RLERVLGHLVQNALEATPGEGRVAIRVERECGAARIEIEDSGCGMSPAFIRERLFKPFDTTKG------------AGMGI 646 (679)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCEEEEEEEEcCCCcChHHHHHhcCCCCCCCCC------------CCcch
Confidence 377899999999999864 46788874 34566799999999999999 8899999998873 23467
Q ss_pred hhhhhhcc-----ceEEEEEecC
Q psy1955 102 ALASISHV-----AHLTIITKTK 119 (512)
Q Consensus 102 aL~si~~~-----s~l~i~S~~~ 119 (512)
+|+....+ +++++.|...
T Consensus 647 GL~i~~~iv~~~gG~i~v~s~~g 669 (679)
T TIGR02916 647 GVYECRQYVEEIGGRIEVESTPG 669 (679)
T ss_pred hHHHHHHHHHHcCCEEEEEecCC
Confidence 77654433 4699888653
No 73
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=97.81 E-value=6.1e-05 Score=86.52 Aligned_cols=89 Identities=19% Similarity=0.315 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHccccCCC-CeEEEEEE--eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCCcchh
Q psy1955 26 RPANALKELLENSLDAKS-TSIQVTVK--QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFRGEA 102 (512)
Q Consensus 26 ~~~~~v~eLv~Ns~dA~a-~~i~i~~~--~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~rGea 102 (512)
.+.+++.||+.||+++.. ..|.|.+. .++...+.|.|||+||++++++.+|++|+++|-... -...|-.|.+
T Consensus 398 ~l~qvl~NLl~NAik~~~~g~v~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~-----~~~~~GtGLG 472 (779)
T PRK11091 398 RLRQILWNLISNAVKFTQQGGVTVRVRYEEGDMLTFEVEDSGIGIPEDELDKIFAMYYQVKDSHG-----GKPATGTGIG 472 (779)
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEEEccCCEEEEEEEecCCCCCHHHHHHHHHHhhcccCCCC-----CCCCCCcchH
Confidence 478999999999999874 45677663 245567999999999999999999999999873221 1223445666
Q ss_pred hhhhhcc-----ceEEEEEecC
Q psy1955 103 LASISHV-----AHLTIITKTK 119 (512)
Q Consensus 103 L~si~~~-----s~l~i~S~~~ 119 (512)
|+-...+ +++++.|...
T Consensus 473 L~i~~~iv~~~gG~i~v~s~~g 494 (779)
T PRK11091 473 LAVSKRLAQAMGGDITVTSEEG 494 (779)
T ss_pred HHHHHHHHHHcCCEEEEEecCC
Confidence 6543333 4799988753
No 74
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=97.79 E-value=7.1e-05 Score=87.31 Aligned_cols=83 Identities=22% Similarity=0.294 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHccccCC-CCeEEEEEE-eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCCcchhh
Q psy1955 26 RPANALKELLENSLDAK-STSIQVTVK-QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFRGEAL 103 (512)
Q Consensus 26 ~~~~~v~eLv~Ns~dA~-a~~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~rGeaL 103 (512)
.+.+++.|||+||+++. ...|.|.+. .++...|+|.|||+||++++++.+|++|++++-. .|-.|.+|
T Consensus 513 ~l~~il~NLl~NAik~~~~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~----------~~g~GLGL 582 (921)
T PRK15347 513 RLRQILVNLLGNAVKFTETGGIRLRVKRHEQQLCFTVEDTGCGIDIQQQQQIFTPFYQADTH----------SQGTGLGL 582 (921)
T ss_pred HHHHHHHHHHHHHhhcCCCCCEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhcCcccCCCC----------CCCCchHH
Confidence 37889999999999985 346888774 4456679999999999999999999999987632 13346677
Q ss_pred hhhhcc-----ceEEEEEec
Q psy1955 104 ASISHV-----AHLTIITKT 118 (512)
Q Consensus 104 ~si~~~-----s~l~i~S~~ 118 (512)
+-...+ +.++|.|..
T Consensus 583 ~i~~~~~~~~gG~i~i~s~~ 602 (921)
T PRK15347 583 TIASSLAKMMGGELTLFSTP 602 (921)
T ss_pred HHHHHHHHHcCCEEEEEecC
Confidence 543333 368988865
No 75
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=97.72 E-value=9.7e-05 Score=85.55 Aligned_cols=81 Identities=22% Similarity=0.398 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHccccCCC--CeEEEEEEe----------------CCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCc
Q psy1955 26 RPANALKELLENSLDAKS--TSIQVTVKQ----------------GGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQF 87 (512)
Q Consensus 26 ~~~~~v~eLv~Ns~dA~a--~~i~i~~~~----------------~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~ 87 (512)
.+.+++.||+.||+++.. ..|.|.+.. ++...|.|.|||+||++++++.+|++|+|+|-
T Consensus 560 ~L~qvl~NLl~NAik~~~~~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~--- 636 (828)
T PRK13837 560 ELQQVLMNLCSNAAQAMDGAGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRA--- 636 (828)
T ss_pred HHHHHHHHHHHHHHHHcccCCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCC---
Confidence 478899999999999743 567777632 44567999999999999999999999998863
Q ss_pred cccccccccCCcchhhhhhhcc-----ceEEEEEec
Q psy1955 88 EDLNSISTFGFRGEALASISHV-----AHLTIITKT 118 (512)
Q Consensus 88 ~d~~~~~~~G~rGeaL~si~~~-----s~l~i~S~~ 118 (512)
+-.|.+|+-...+ +++++.|..
T Consensus 637 ---------~G~GLGL~i~~~iv~~~gG~i~v~s~~ 663 (828)
T PRK13837 637 ---------GGTGLGLATVHGIVSAHAGYIDVQSTV 663 (828)
T ss_pred ---------CCCcchHHHHHHHHHHCCCEEEEEecC
Confidence 2346666543333 468888874
No 76
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=97.72 E-value=9.4e-05 Score=85.85 Aligned_cols=87 Identities=20% Similarity=0.233 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHccccCCC-CeEEEEEEe----CCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCCcc
Q psy1955 26 RPANALKELLENSLDAKS-TSIQVTVKQ----GGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFRG 100 (512)
Q Consensus 26 ~~~~~v~eLv~Ns~dA~a-~~i~i~~~~----~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~rG 100 (512)
.+.+++.+|+.||+++.+ ..|.|.+.. ++...|.|.|+|+||++++++.+|++|+++|-.. ...+-.|
T Consensus 565 ~L~QVL~NLL~NAik~t~~G~I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l~~IFePF~t~~~~~-------~~~~GtG 637 (894)
T PRK10618 565 ALRKILLLLLNYAITTTAYGKITLEVDQDESSPDRLTIRILDTGAGVSIKELDNLHFPFLNQTQGD-------RYGKASG 637 (894)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEEEEccCCCcEEEEEEEECCCCCCHHHHHHhcCccccCCCCC-------CCCCCcC
Confidence 578999999999999854 356666632 2456799999999999999999999999876432 1112235
Q ss_pred hhhhhhhcc-----ceEEEEEecC
Q psy1955 101 EALASISHV-----AHLTIITKTK 119 (512)
Q Consensus 101 eaL~si~~~-----s~l~i~S~~~ 119 (512)
.+|+-...+ +.+++.|...
T Consensus 638 LGLaI~k~Lve~~GG~I~v~S~~g 661 (894)
T PRK10618 638 LTFFLCNQLCRKLGGHLTIKSREG 661 (894)
T ss_pred hhHHHHHHHHHHcCCEEEEEECCC
Confidence 555432222 4799998753
No 77
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=97.69 E-value=0.00015 Score=82.48 Aligned_cols=88 Identities=13% Similarity=0.188 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHccccCCC--CeEEEEEE-eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCCcchh
Q psy1955 26 RPANALKELLENSLDAKS--TSIQVTVK-QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFRGEA 102 (512)
Q Consensus 26 ~~~~~v~eLv~Ns~dA~a--~~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~rGea 102 (512)
.+..++.|||+||+++.. ..|.|.+. .++...|.|.|||+||++++++.+|++|+++|-.... .-+-.|.+
T Consensus 597 ~L~~il~NLI~NAik~s~~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFe~F~t~~~~~~~------~~~g~GLG 670 (703)
T TIGR03785 597 LIAQMLDKLVDNAREFSPEDGLIEVGLSQNKSHALLTVSNEGPPLPEDMGEQLFDSMVSVRDQGAQ------DQPHLGLG 670 (703)
T ss_pred HHHHHHHHHHHHHHHHCCCCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhCCCeecCCCCCC------CCCCccHH
Confidence 477899999999999864 35777774 4556679999999999999999999999988743211 11124666
Q ss_pred hhhhhcc-----ceEEEEEecC
Q psy1955 103 LASISHV-----AHLTIITKTK 119 (512)
Q Consensus 103 L~si~~~-----s~l~i~S~~~ 119 (512)
|+-...+ +++++.+...
T Consensus 671 L~Ivr~Iv~~~gG~I~v~s~~~ 692 (703)
T TIGR03785 671 LYIVRLIADFHQGRIQAENRQQ 692 (703)
T ss_pred HHHHHHHHHHcCCEEEEEECCC
Confidence 6544333 3688877754
No 78
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=97.69 E-value=0.00025 Score=79.08 Aligned_cols=163 Identities=15% Similarity=0.201 Sum_probs=101.5
Q ss_pred hhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCceeeEeecCCCCCCCcchhhh---------hhhccccCCccc
Q psy1955 286 DTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDI---------VCERFTTSKLTQ 356 (512)
Q Consensus 286 ~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~---------~~~~~~TSKi~~ 356 (512)
.-+...+.+.|.|+++..-.. +. ..|+|.+...| .++|.|||.||+.+--.. +..-|+.+|+++
T Consensus 33 ~GL~hlv~EIvdNavDE~~ag--~~---~~I~V~i~~dg--sitV~DnGrGIPv~~h~~~~~~~~E~v~t~LhaGgkfd~ 105 (637)
T TIGR01058 33 KGLHHLVWEIVDNSVDEVLAG--YA---DNITVTLHKDN--SITVQDDGRGIPTGIHQDGNISTVETVFTVLHAGGKFDQ 105 (637)
T ss_pred chhheehhhhhcchhhhhhcC--CC---cEEEEEEcCCC--eEEEEECCCcccCcccCcCCCccceeEEEEecccCcCCC
Confidence 334455555555555532100 00 01667766433 699999999998631111 233366677653
Q ss_pred cccccccccccccchhhhhHhhhcc-eEEEEecCCCCCceEEEEecC-cccccc--cccCCCCCceEEehhhcccchhhh
Q psy1955 357 FEDLNSISTFGFRGEALASISHVAH-LTIITKTKTSPCAYRASYIDS-KLKDPI--KPCAGNQGTQIIAEDLFYNIPTRR 432 (512)
Q Consensus 357 ~~dl~~~~t~GfRGeALaSi~~~s~-l~I~T~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~GTtV~V~~lF~n~PvRr 432 (512)
+-.. -+-|++|..++...++|+ ++|.++..+ ..|...|.+| ....+. .......||+|+- +|-..
T Consensus 106 --~~yk-vSGGlhGvG~svvNAlS~~~~V~v~r~g--k~~~q~f~~Gg~~~~~l~~~~~~~~~GT~V~F------~PD~~ 174 (637)
T TIGR01058 106 --GGYK-TAGGLHGVGASVVNALSSWLEVTVKRDG--QIYQQRFENGGKIVQSLKKIGTTKKTGTLVHF------HPDPT 174 (637)
T ss_pred --Cccc-ccCCcccccccccceeeceEEEEEEECC--EEEEEEEecCCcCcCCcccccCCCCCceEEEE------EeCHH
Confidence 1111 256999999999999997 888888654 3466778775 433221 1234578999987 44443
Q ss_pred cccCCChHHHHHHHHHHHHHhhcCCCeEEEEEECC
Q psy1955 433 KALKQPSEEYNKIADVVSRYAVHNPHVGFTLKKQN 467 (512)
Q Consensus 433 k~~~~~~~e~~~i~~~l~~yaL~~p~v~f~l~~~~ 467 (512)
.| ....-.+..+.+.++.+|..+|.+++.|....
T Consensus 175 iF-~~~~f~~d~l~~RlrelA~Ln~GL~I~l~der 208 (637)
T TIGR01058 175 IF-KTTQFNSNIIKERLKESAFLLKKLKLTFTDKR 208 (637)
T ss_pred Hc-CCCccCHHHHHHHHHHHhccCCCcEEEEEecC
Confidence 33 22222345689999999999999999998753
No 79
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=97.68 E-value=8.3e-05 Score=76.48 Aligned_cols=81 Identities=17% Similarity=0.242 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHccccCC-C--CeEEEEEEeC-----------CeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccc
Q psy1955 26 RPANALKELLENSLDAK-S--TSIQVTVKQG-----------GLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLN 91 (512)
Q Consensus 26 ~~~~~v~eLv~Ns~dA~-a--~~i~i~~~~~-----------~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~ 91 (512)
.+.+++.||+.||++|. . ..|.|.+... ....|.|.|||+||+++..+.+|++|+|+|-.
T Consensus 237 ~l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~~~~------ 310 (348)
T PRK11073 237 QIEQVLLNIVRNALQALGPEGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSGREG------ 310 (348)
T ss_pred HHHHHHHHHHHHHHHHhccCCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhhccCCcccCCCC------
Confidence 37899999999999975 3 3455544211 02358999999999999999999999998732
Q ss_pred cccccCCcchhhhhhhcc-----ceEEEEEec
Q psy1955 92 SISTFGFRGEALASISHV-----AHLTIITKT 118 (512)
Q Consensus 92 ~~~~~G~rGeaL~si~~~-----s~l~i~S~~ 118 (512)
-.|.+|+-...+ +.+++.|..
T Consensus 311 ------g~GlGL~i~~~iv~~~gG~i~~~s~~ 336 (348)
T PRK11073 311 ------GTGLGLSIARNLIDQHSGKIEFTSWP 336 (348)
T ss_pred ------CccCCHHHHHHHHHHcCCeEEEEecC
Confidence 235556543333 468888764
No 80
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=97.67 E-value=0.00017 Score=64.26 Aligned_cols=83 Identities=14% Similarity=0.264 Sum_probs=58.7
Q ss_pred ccCHHHHHHHHHHccccCC-----CCeEEEEEE-eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccC
Q psy1955 24 IQRPANALKELLENSLDAK-----STSIQVTVK-QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFG 97 (512)
Q Consensus 24 i~~~~~~v~eLv~Ns~dA~-----a~~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G 97 (512)
+..+..++.|++.||+.++ ...|.|.+. .++...+.|.|||.||+ +.+.+++++++++.. .+
T Consensus 37 ~~~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~~~~~~~i~I~D~G~gi~--~~~~~~~~~~~~~~~----------~~ 104 (137)
T TIGR01925 37 LTDIKTAVSEAVTNAIIHGYEENCEGVVYISATIEDHEVYITVRDEGIGIE--NLEEAREPLYTSKPE----------LE 104 (137)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEeCCEEEEEEEEcCCCcC--chhHhhCCCcccCCC----------CC
Confidence 4567789999999999864 346777774 44456799999999998 466888888876531 12
Q ss_pred Ccchhhhhhhccc-eEEEEEec
Q psy1955 98 FRGEALASISHVA-HLTIITKT 118 (512)
Q Consensus 98 ~rGeaL~si~~~s-~l~i~S~~ 118 (512)
-.|.+|+-+..+. ++++.+..
T Consensus 105 ~~GlGL~lv~~~~~~l~~~~~~ 126 (137)
T TIGR01925 105 RSGMGFTVMENFMDDVSVDSEK 126 (137)
T ss_pred CCcccHHHHHHhCCcEEEEECC
Confidence 3456665555555 58887764
No 81
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=97.65 E-value=0.00027 Score=76.66 Aligned_cols=108 Identities=23% Similarity=0.371 Sum_probs=72.1
Q ss_pred ccccChHHHHHHhcCCccc------CHHHHHHHHHHcccc---CC-CCeEEEEEEeCCeeeEEEEeCCCCCCHHh-----
Q psy1955 7 IKKLDETVVNRIAAGEVIQ------RPANALKELLENSLD---AK-STSIQVTVKQGGLKLLQIQDNGTGIRKED----- 71 (512)
Q Consensus 7 i~~l~~~~~~~i~s~~~i~------~~~~~v~eLv~Ns~d---A~-a~~i~i~~~~~~~~~i~v~DnG~Gi~~~~----- 71 (512)
|+.|..=-.=+.+.|..|. .|...+-|.|+||+| || |+.|.|.++.++ .|+|.|||.|||-+-
T Consensus 11 I~vL~GLEaVRkRPGMYIGst~~~~GLhHlv~EVvDNsiDEalaG~~~~I~V~l~~d~--sisV~DnGRGIPvdiH~~~~ 88 (635)
T COG0187 11 IQVLEGLEAVRKRPGMYIGSTGDGRGLHHLVWEVVDNSIDEALAGYADRIDVTLHEDG--SISVEDNGRGIPVDIHPKEK 88 (635)
T ss_pred ceeccCcHHhhcCCCceeccCCCCCcceeeEeEeeechHhHHhhCcCcEEEEEEcCCC--eEEEEECCCCCccccCCCCC
Confidence 5554432223345566653 466699999999999 44 899999998665 489999999999775
Q ss_pred ---HHHHH-hhcccCCCCCccccccccccCCcchhhhhhhccce-EEEEEecC
Q psy1955 72 ---MDIVC-ERFTTSKLTQFEDLNSISTFGFRGEALASISHVAH-LTIITKTK 119 (512)
Q Consensus 72 ---~~~~~-~~~~tsK~~~~~d~~~~~~~G~rGeaL~si~~~s~-l~i~S~~~ 119 (512)
++.++ .-|+.+|+.. +-.+ -+=|.-|-+..-.-++|. ++|..+..
T Consensus 89 ~~~vEvI~T~LHAGGKFd~--~~Yk-vSGGLHGVG~SVVNALS~~l~v~v~r~ 138 (635)
T COG0187 89 VSAVEVIFTVLHAGGKFDN--DSYK-VSGGLHGVGVSVVNALSTWLEVEVKRD 138 (635)
T ss_pred CCceEEEEEeeccCcccCC--CccE-eecCCCccceEEEecccceEEEEEEEC
Confidence 33333 3355556543 1111 234677888888888884 88777764
No 82
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=97.61 E-value=0.00022 Score=59.18 Aligned_cols=59 Identities=31% Similarity=0.534 Sum_probs=49.5
Q ss_pred cCHHHHHHHHHHccccCCCC--eEEEEEE-eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCC
Q psy1955 25 QRPANALKELLENSLDAKST--SIQVTVK-QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSK 83 (512)
Q Consensus 25 ~~~~~~v~eLv~Ns~dA~a~--~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK 83 (512)
..+..++.|+++|++++..+ .+.|.+. .++...+.|.|+|.||++++++.++.+++.++
T Consensus 4 ~~l~~~~~~l~~n~~~~~~~~~~v~i~~~~~~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~ 65 (111)
T smart00387 4 DRLRQVLSNLLDNAIKYTPEGGRITVTLERDGDHLEITVEDNGPGIPPEDLEKIFEPFFRTD 65 (111)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHHhcCeEECC
Confidence 34778999999999999885 7777774 34566799999999999999999998888665
No 83
>PRK10337 sensor protein QseC; Provisional
Probab=97.60 E-value=0.00016 Score=77.06 Aligned_cols=80 Identities=19% Similarity=0.320 Sum_probs=56.4
Q ss_pred HHHHHHHHHHccccCCCCe--EEEEEEeCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCCcchhhh
Q psy1955 27 PANALKELLENSLDAKSTS--IQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFRGEALA 104 (512)
Q Consensus 27 ~~~~v~eLv~Ns~dA~a~~--i~i~~~~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~rGeaL~ 104 (512)
+..++.|||+||++++... |.|.+... .|.|.|||.||++++++.+|++|++.+-.. -+-.|.+|+
T Consensus 353 l~~vl~Nli~NA~k~~~~~~~i~i~~~~~---~i~i~D~G~Gi~~~~~~~if~~f~~~~~~~---------~~g~GlGL~ 420 (449)
T PRK10337 353 LSLLVRNLLDNAIRYSPQGSVVDVTLNAR---NFTVRDNGPGVTPEALARIGERFYRPPGQE---------ATGSGLGLS 420 (449)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEEEee---EEEEEECCCCCCHHHHHHhcccccCCCCCC---------CCccchHHH
Confidence 5668999999999987654 55555432 599999999999999999999999754211 122455554
Q ss_pred hhhcc-----ceEEEEEec
Q psy1955 105 SISHV-----AHLTIITKT 118 (512)
Q Consensus 105 si~~~-----s~l~i~S~~ 118 (512)
-...+ +++++.+..
T Consensus 421 iv~~i~~~~gg~l~~~s~~ 439 (449)
T PRK10337 421 IVRRIAKLHGMNVSFGNAP 439 (449)
T ss_pred HHHHHHHHcCCEEEEEecC
Confidence 33322 368887764
No 84
>PRK10490 sensor protein KdpD; Provisional
Probab=97.58 E-value=0.00017 Score=84.01 Aligned_cols=85 Identities=20% Similarity=0.279 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHccccCCCC--eEEEEEE-eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCCcchh
Q psy1955 26 RPANALKELLENSLDAKST--SIQVTVK-QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFRGEA 102 (512)
Q Consensus 26 ~~~~~v~eLv~Ns~dA~a~--~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~rGea 102 (512)
.+.+++.|||+||+++... .|.|.+. .++...|.|.|||+||++++++.+|++|++++-.. ..+-.|.+
T Consensus 778 ~L~qVL~NLL~NAik~s~~g~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~~~--------~~~G~GLG 849 (895)
T PRK10490 778 LFERVLINLLENAVKYAGAQAEIGIDAHVEGERLQLDVWDNGPGIPPGQEQLIFDKFARGNKES--------AIPGVGLG 849 (895)
T ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEEEeCCEEEEEEEECCCCCCHHHHHHhcCCCccCCCCC--------CCCCccHH
Confidence 4678999999999998643 5677764 45566799999999999999999999999876321 11223666
Q ss_pred hhhhhcc-----ceEEEEEec
Q psy1955 103 LASISHV-----AHLTIITKT 118 (512)
Q Consensus 103 L~si~~~-----s~l~i~S~~ 118 (512)
|+-...+ +++++.|..
T Consensus 850 L~Ivk~ive~hGG~I~v~s~~ 870 (895)
T PRK10490 850 LAICRAIVEVHGGTIWAENRP 870 (895)
T ss_pred HHHHHHHHHHcCCEEEEEECC
Confidence 6533333 468888864
No 85
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=97.57 E-value=0.00025 Score=71.52 Aligned_cols=88 Identities=27% Similarity=0.384 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHccccCCC--CeEEEEEE-eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCCcchh
Q psy1955 26 RPANALKELLENSLDAKS--TSIQVTVK-QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFRGEA 102 (512)
Q Consensus 26 ~~~~~v~eLv~Ns~dA~a--~~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~rGea 102 (512)
.+..++.+|+.||++++. ..|.|.+. .++...+.|.|||.||+++.++.+|.+|++.+.... ...+-.|.+
T Consensus 229 ~l~~vl~nll~Nai~~~~~~~~i~i~~~~~~~~~~i~i~d~G~gi~~~~~~~if~~~~~~~~~~~------~~~~g~glG 302 (333)
T TIGR02966 229 ELRSAFSNLVSNAIKYTPEGGTITVRWRRDGGGAEFSVTDTGIGIAPEHLPRLTERFYRVDKSRS------RDTGGTGLG 302 (333)
T ss_pred HHHHHHHHHHHHhheeCCCCCeEEEEEEEcCCEEEEEEEecCCCCCHHHHhhhccCceecCcccc------cCCCCCccc
Confidence 367799999999999865 45666663 344567999999999999999999999997543211 112234666
Q ss_pred hhhhhcc-----ceEEEEEecC
Q psy1955 103 LASISHV-----AHLTIITKTK 119 (512)
Q Consensus 103 L~si~~~-----s~l~i~S~~~ 119 (512)
|+....+ +++++.|...
T Consensus 303 L~~~~~~~~~~gG~i~~~s~~~ 324 (333)
T TIGR02966 303 LAIVKHVLSRHHARLEIESELG 324 (333)
T ss_pred HHHHHHHHHHCCCEEEEEecCC
Confidence 6543222 4688888753
No 86
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=97.55 E-value=0.00015 Score=79.34 Aligned_cols=81 Identities=23% Similarity=0.268 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHccccCCCC--eEEEEEE-eCCe-eeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCCcch
Q psy1955 26 RPANALKELLENSLDAKST--SIQVTVK-QGGL-KLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFRGE 101 (512)
Q Consensus 26 ~~~~~v~eLv~Ns~dA~a~--~i~i~~~-~~~~-~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~rGe 101 (512)
.+.+++.||+.||+++... .|.|.+. .++. ..|.|.|||+||+++.++.+|++++++|-. ..|.
T Consensus 500 ~l~~~~~nli~na~~~~~~~~~i~v~~~~~~~~~~~i~v~D~G~G~~~~~~~~~f~~~~~~~~~------------g~gl 567 (607)
T PRK11360 500 LLKQVLLNILINAVQAISARGKIRIRTWQYSDGQVAVSIEDNGCGIDPELLKKIFDPFFTTKAK------------GTGL 567 (607)
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEEEEEcCCCEEEEEEEeCCCCCCHHHHhhhcCCceeCCCC------------CCch
Confidence 4788999999999998544 4666663 2233 679999999999999999999999987732 2355
Q ss_pred hhhhhhc----c-ceEEEEEec
Q psy1955 102 ALASISH----V-AHLTIITKT 118 (512)
Q Consensus 102 aL~si~~----~-s~l~i~S~~ 118 (512)
+|+-+-. . +++++.|..
T Consensus 568 GL~~~~~~~~~~~G~i~~~s~~ 589 (607)
T PRK11360 568 GLALSQRIINAHGGDIEVESEP 589 (607)
T ss_pred hHHHHHHHHHHcCCEEEEEEcC
Confidence 5543322 2 479988875
No 87
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=97.52 E-value=0.00018 Score=71.67 Aligned_cols=83 Identities=17% Similarity=0.198 Sum_probs=58.7
Q ss_pred cCHHHHHHHHHHccccCCC------CeEEEEE------EeCC-----eeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCc
Q psy1955 25 QRPANALKELLENSLDAKS------TSIQVTV------KQGG-----LKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQF 87 (512)
Q Consensus 25 ~~~~~~v~eLv~Ns~dA~a------~~i~i~~------~~~~-----~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~ 87 (512)
..+.+|+-|||.||.+|.+ ..|.++- ...+ ...|+|.|||+|++++-.+.+|.++.|+|-.
T Consensus 240 DqliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~Vs~r~~-- 317 (363)
T COG3852 240 DQLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMVSGREG-- 317 (363)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEEEccCceeEeeeeeEEecCCCCCChHHhhhccccccccCCC--
Confidence 3578999999999999988 3343322 1111 2468999999999999999999999999954
Q ss_pred cccccccccCCcchhhhhhhcc-----ceEEEEEecC
Q psy1955 88 EDLNSISTFGFRGEALASISHV-----AHLTIITKTK 119 (512)
Q Consensus 88 ~d~~~~~~~G~rGeaL~si~~~-----s~l~i~S~~~ 119 (512)
-.|-+|+-...+ +.++..|.+.
T Consensus 318 ----------GsGLGLala~~li~qH~G~Ie~~S~Pg 344 (363)
T COG3852 318 ----------GTGLGLALAQNLIDQHGGKIEFDSWPG 344 (363)
T ss_pred ----------CccccHHHHHHHHHhcCCEEEEeccCC
Confidence 235555433333 2477777653
No 88
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=97.51 E-value=0.00034 Score=82.12 Aligned_cols=87 Identities=22% Similarity=0.337 Sum_probs=63.3
Q ss_pred cCHHHHHHHHHHccccCCC-CeEEEEEE--eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCCcch
Q psy1955 25 QRPANALKELLENSLDAKS-TSIQVTVK--QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFRGE 101 (512)
Q Consensus 25 ~~~~~~v~eLv~Ns~dA~a-~~i~i~~~--~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~rGe 101 (512)
..+.+++.|||.||+++.. ..|.|.+. .+....|.|.|+|+||++++++.+|++|++.+ .. ...|-.|.
T Consensus 578 ~~l~~il~nLi~NAik~~~~g~i~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~-~~-------~~~~g~GL 649 (968)
T TIGR02956 578 PRIRQVLINLVGNAIKFTDRGSVVLRVSLNDDSSLLFEVEDTGCGIAEEEQATLFDAFTQAD-GR-------RRSGGTGL 649 (968)
T ss_pred HHHHHHHHHHHHHHHhhCCCCeEEEEEEEcCCCeEEEEEEeCCCCCCHHHHHHHHhhhhccC-CC-------CCCCCccH
Confidence 3467899999999999864 45677663 33315799999999999999999999999876 21 22345577
Q ss_pred hhhhhhcc-----ceEEEEEecC
Q psy1955 102 ALASISHV-----AHLTIITKTK 119 (512)
Q Consensus 102 aL~si~~~-----s~l~i~S~~~ 119 (512)
+|+-...+ +++++.|...
T Consensus 650 GL~i~~~l~~~~gG~i~~~s~~~ 672 (968)
T TIGR02956 650 GLAISQRLVEAMDGELGVESELG 672 (968)
T ss_pred HHHHHHHHHHHcCCEEEEEecCC
Confidence 77543333 3688887643
No 89
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=97.48 E-value=0.00038 Score=81.32 Aligned_cols=84 Identities=23% Similarity=0.335 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHccccCC-CCeEEEEEE-eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCCcchhh
Q psy1955 26 RPANALKELLENSLDAK-STSIQVTVK-QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFRGEAL 103 (512)
Q Consensus 26 ~~~~~v~eLv~Ns~dA~-a~~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~rGeaL 103 (512)
.+.+++.||+.||+++. ...|.|.+. .++...|.|.|||+||++++++.+|++|++.+-. .|-.|.+|
T Consensus 561 ~l~qil~NLl~NAik~~~~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~----------~~g~GLGL 630 (914)
T PRK11466 561 RIRQVITNLLSNALRFTDEGSIVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGK----------RGGTGLGL 630 (914)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHhchhhcCCCC----------CCCCcccH
Confidence 46789999999999986 346777774 3445679999999999999999999999965311 13346666
Q ss_pred hhhhcc-----ceEEEEEecC
Q psy1955 104 ASISHV-----AHLTIITKTK 119 (512)
Q Consensus 104 ~si~~~-----s~l~i~S~~~ 119 (512)
+-...+ ++++|.|...
T Consensus 631 ~i~~~l~~~~gG~i~v~s~~~ 651 (914)
T PRK11466 631 TISSRLAQAMGGELSATSTPE 651 (914)
T ss_pred HHHHHHHHHcCCEEEEEecCC
Confidence 543333 3689988753
No 90
>PRK14083 HSP90 family protein; Provisional
Probab=97.47 E-value=0.0005 Score=76.14 Aligned_cols=157 Identities=17% Similarity=0.217 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhcCCCCcceeec-ceeeEEEEEccCceeeEeecCCCCCCCcchhhhhhhc-cccCCcccccccccccccc
Q psy1955 290 ERVQSMLEKTLLGSNTSRVFYT-QSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCER-FTTSKLTQFEDLNSISTFG 367 (512)
Q Consensus 290 ~~I~~~l~~~l~~~~~~r~~~~-q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~~~~~-~~TSKi~~~~dl~~~~t~G 367 (512)
..|+++|.|+.++.+..+.... ....|.|.+...+...+.|.|||.||+.+++...... ...+|-.....-..-...|
T Consensus 26 iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~d~~~~~l~I~DnGiGmt~eel~~~l~~ig~S~k~~~~~~~~~~~~IG 105 (601)
T PRK14083 26 VYVRELLQNAVDAITARRALDPTAPGRIRIELTDAGGGTLIVEDNGIGLTEEEVHEFLATIGRSSKRDENLGFARNDFLG 105 (601)
T ss_pred HHHHHHHHhHHHHHHhhhccCCCCCceEEEEEccCCCcEEEEEeCCCCCCHHHHHHHHhhhccchhhhhhhccccccccc
Confidence 4589999999998754322110 0112556552233457899999999999999874322 2234422110011234679
Q ss_pred ccchhhhhHhhhcc-eEEEEecCCCCCceEEEEecCc-cc-ccccccCCCCCceEEehhhcccchhhhcccCCChHHHHH
Q psy1955 368 FRGEALASISHVAH-LTIITKTKTSPCAYRASYIDSK-LK-DPIKPCAGNQGTQIIAEDLFYNIPTRRKALKQPSEEYNK 444 (512)
Q Consensus 368 fRGeALaSi~~~s~-l~I~T~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~GTtV~V~~lF~n~PvRrk~~~~~~~e~~~ 444 (512)
..|--..|.-.+|+ ++|+||..++..++.|.-..++ .. ........++||+|++.- -|--+.++ +-.+
T Consensus 106 ~FGIGf~S~F~vad~v~V~Tr~~~~~~~~~W~~~~~g~y~i~~~~~~~~~~GT~I~L~l----~~d~~~~~-----~~~~ 176 (601)
T PRK14083 106 QFGIGLLSCFLVADEIVVVSRSAKDGPAVEWRGKADGTYSVRKLETERAEPGTTVYLRP----RPDAEEWL-----ERET 176 (601)
T ss_pred ccccceEEEEEecCEEEEEeccCCCCceEEEEECCCCceEEEeCCCCCCCCCCEEEEEe----cCchhhhc-----cHHH
Confidence 99998888888884 9999998755556655443222 11 111123557999999942 11111122 2346
Q ss_pred HHHHHHHHhhc
Q psy1955 445 IADVVSRYAVH 455 (512)
Q Consensus 445 i~~~l~~yaL~ 455 (512)
+++++.+|+-.
T Consensus 177 i~~li~~ys~~ 187 (601)
T PRK14083 177 VEELAKKYGSL 187 (601)
T ss_pred HHHHHHHHhcc
Confidence 78888888654
No 91
>PRK09835 sensor kinase CusS; Provisional
Probab=97.47 E-value=0.00049 Score=73.90 Aligned_cols=86 Identities=20% Similarity=0.265 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHccccCCC--CeEEEEEE-eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCCcchh
Q psy1955 26 RPANALKELLENSLDAKS--TSIQVTVK-QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFRGEA 102 (512)
Q Consensus 26 ~~~~~v~eLv~Ns~dA~a--~~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~rGea 102 (512)
.+..++.||++||+.+.. ..|.|.+. .++...|.|.|||.||++++++.+|++|++....... .. +-.|.+
T Consensus 375 ~l~~vl~nll~Na~~~~~~~~~I~i~~~~~~~~~~i~v~d~G~gi~~~~~~~if~~f~~~~~~~~~-----~~-~g~GlG 448 (482)
T PRK09835 375 MLRRAISNLLSNALRYTPAGEAITVRCQEVDHQVQLVVENPGTPIAPEHLPRLFDRFYRVDPSRQR-----KG-EGSGIG 448 (482)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhCCcccCCCCCCC-----CC-CCcchH
Confidence 478999999999999864 35777773 3445679999999999999999999999976432110 11 223666
Q ss_pred hhhhhcc-----ceEEEEEe
Q psy1955 103 LASISHV-----AHLTIITK 117 (512)
Q Consensus 103 L~si~~~-----s~l~i~S~ 117 (512)
|+-...+ +++++.|.
T Consensus 449 L~i~~~i~~~~~g~i~~~s~ 468 (482)
T PRK09835 449 LAIVKSIVVAHKGTVAVTSD 468 (482)
T ss_pred HHHHHHHHHHCCCEEEEEEC
Confidence 6433222 46888885
No 92
>PRK13557 histidine kinase; Provisional
Probab=97.46 E-value=0.00027 Score=76.78 Aligned_cols=84 Identities=21% Similarity=0.281 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHccccCCCC--eEEEEEE----------------eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCc
Q psy1955 26 RPANALKELLENSLDAKST--SIQVTVK----------------QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQF 87 (512)
Q Consensus 26 ~~~~~v~eLv~Ns~dA~a~--~i~i~~~----------------~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~ 87 (512)
.+.+++.+|+.||++|... .|.|... .++...|.|.|||.||+++..+.+|++|+++|-.
T Consensus 277 ~l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~~-- 354 (540)
T PRK13557 277 QAEVALLNVLINARDAMPEGGRVTIRTRNVEIEDEDLAMYHGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTKEE-- 354 (540)
T ss_pred HHHHHHHHHHHHHHHhcccCCeEEEEEeeeccCccccccccCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccCCC--
Confidence 3678999999999998643 3444432 2234579999999999999999999999988632
Q ss_pred cccccccccCCcchhhhhhh----cc-ceEEEEEecC
Q psy1955 88 EDLNSISTFGFRGEALASIS----HV-AHLTIITKTK 119 (512)
Q Consensus 88 ~d~~~~~~~G~rGeaL~si~----~~-s~l~i~S~~~ 119 (512)
.+-.|.+|+-.. .+ +.+++.|...
T Consensus 355 --------~~g~GlGL~i~~~~v~~~gG~i~~~s~~~ 383 (540)
T PRK13557 355 --------GKGTGLGLSMVYGFAKQSGGAVRIYSEVG 383 (540)
T ss_pred --------CCCCCccHHHHHHHHHHCCCEEEEEecCC
Confidence 223456664332 22 4699988753
No 93
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=97.43 E-value=0.00018 Score=77.49 Aligned_cols=81 Identities=23% Similarity=0.373 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHccccCCCC---------eEEEEE-EeCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccc
Q psy1955 26 RPANALKELLENSLDAKST---------SIQVTV-KQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSIST 95 (512)
Q Consensus 26 ~~~~~v~eLv~Ns~dA~a~---------~i~i~~-~~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~ 95 (512)
-+.+|+.||++||.+|... .|.+.. +.+|..++.|.|||.|.+.++..++++||.|+|-+.
T Consensus 600 ~l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~r~r~~EPYvTtr~KG--------- 670 (712)
T COG5000 600 LLGQVFGNLLKNAAEAIEAVEAEERRTALIRVSLDDADGRIVVDVIDNGKGFPRENRHRALEPYVTTREKG--------- 670 (712)
T ss_pred HHHHHHHHHHHhHHHHhhhcccccCCcceEEEEEecCCCeEEEEEecCCCCCChHHhhhhccCceeccccc---------
Confidence 3678999999999998533 356666 356677899999999999999999999999998542
Q ss_pred cCCcchhhhhhh-----ccceEEEEEec
Q psy1955 96 FGFRGEALASIS-----HVAHLTIITKT 118 (512)
Q Consensus 96 ~G~rGeaL~si~-----~~s~l~i~S~~ 118 (512)
-|-+|+-.- +.+++++.-++
T Consensus 671 ---TGLGLAiVKkIvEeHGG~leL~da~ 695 (712)
T COG5000 671 ---TGLGLAIVKKIVEEHGGRLELHNAP 695 (712)
T ss_pred ---ccccHHHHHHHHHhcCCeEEecCCC
Confidence 255555333 23578887776
No 94
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=97.40 E-value=0.00055 Score=80.18 Aligned_cols=87 Identities=18% Similarity=0.312 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHccccCCC-CeEEEEEE-eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCCcchhh
Q psy1955 26 RPANALKELLENSLDAKS-TSIQVTVK-QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFRGEAL 103 (512)
Q Consensus 26 ~~~~~v~eLv~Ns~dA~a-~~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~rGeaL 103 (512)
.+.+++.||+.||+++.. ..|.|.+. .++...|.|.|||.||++++++.+|++|++.+-... ...+-.|.+|
T Consensus 562 ~L~qvl~NLl~NAik~t~~G~I~I~v~~~~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~~~~------~~~~GtGLGL 635 (924)
T PRK10841 562 RLQQVISNLLSNAIKFTDTGCIVLHVRVDGDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGTGVQ------RNFQGTGLGL 635 (924)
T ss_pred HHHHHHHHHHHHHHhhCCCCcEEEEEEEeCCEEEEEEEEcCcCCCHHHHHHHhcccccCCCCCC------CCCCCeehhH
Confidence 467899999999999754 35666663 445567999999999999999999999997642210 1223346666
Q ss_pred hhhhcc-----ceEEEEEec
Q psy1955 104 ASISHV-----AHLTIITKT 118 (512)
Q Consensus 104 ~si~~~-----s~l~i~S~~ 118 (512)
+-...+ +++++.|..
T Consensus 636 ~I~k~lv~~~gG~I~v~S~~ 655 (924)
T PRK10841 636 AICEKLINMMDGDISVDSEP 655 (924)
T ss_pred HHHHHHHHHCCCEEEEEEcC
Confidence 533332 368988874
No 95
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=97.30 E-value=0.00042 Score=70.15 Aligned_cols=74 Identities=27% Similarity=0.425 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHccccCCCC--eEEEEE-EeCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCCcchh
Q psy1955 26 RPANALKELLENSLDAKST--SIQVTV-KQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFRGEA 102 (512)
Q Consensus 26 ~~~~~v~eLv~Ns~dA~a~--~i~i~~-~~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~rGea 102 (512)
-+.+|+-++|.||+.++.. .|++.+ ..+.+..|.|.|.|.|||++|++.+|.|||.-. +- .-.+.|--|.+
T Consensus 342 K~tQVldNii~NA~KYsP~Gg~Itv~~~~~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvd-----kA-RsR~~gGTGLG 415 (459)
T COG5002 342 KMTQVLDNIISNALKYSPDGGRITVSVKQRETWVEISISDQGLGIPKEDLEKIFDRFYRVD-----KA-RSRKMGGTGLG 415 (459)
T ss_pred HHHHHHHHHHHHHhhcCCCCCeEEEEEeeeCcEEEEEEccCCCCCCchhHHHHHHHHhhhh-----hh-hhhcCCCCchh
Confidence 4679999999999998764 677777 356677899999999999999999999999532 11 22577888888
Q ss_pred hhh
Q psy1955 103 LAS 105 (512)
Q Consensus 103 L~s 105 (512)
|+-
T Consensus 416 LaI 418 (459)
T COG5002 416 LAI 418 (459)
T ss_pred HHH
Confidence 863
No 96
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=97.30 E-value=0.0009 Score=78.03 Aligned_cols=88 Identities=17% Similarity=0.298 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHccccCCC-CeEEEEE--Ee--CC--eeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCC
Q psy1955 26 RPANALKELLENSLDAKS-TSIQVTV--KQ--GG--LKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGF 98 (512)
Q Consensus 26 ~~~~~v~eLv~Ns~dA~a-~~i~i~~--~~--~~--~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~ 98 (512)
.+.+++.|||.||+++.. ..|.|.+ .. ++ ...|.|.|||+||++++++.+|++|+...-.. -...|-
T Consensus 408 ~l~~vl~NLl~NAik~~~~g~v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~------~~~~~g 481 (919)
T PRK11107 408 RLQQIITNLVGNAIKFTESGNIDILVELRALSNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADASI------SRRHGG 481 (919)
T ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEEEEEecCCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCCC------CCCCCC
Confidence 467899999999999854 3455544 22 11 35699999999999999999999998643211 122345
Q ss_pred cchhhhhhhcc-----ceEEEEEecC
Q psy1955 99 RGEALASISHV-----AHLTIITKTK 119 (512)
Q Consensus 99 rGeaL~si~~~-----s~l~i~S~~~ 119 (512)
.|.+|+-...+ +++++.|...
T Consensus 482 ~GLGL~i~~~i~~~~gG~i~v~s~~~ 507 (919)
T PRK11107 482 TGLGLVITQKLVNEMGGDISFHSQPN 507 (919)
T ss_pred cchhHHHHHHHHHHhCCEEEEEecCC
Confidence 57777533322 4688888754
No 97
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=97.28 E-value=0.00039 Score=64.21 Aligned_cols=86 Identities=17% Similarity=0.176 Sum_probs=60.0
Q ss_pred cccCHHHHHHHHHHccccCCC-----CeEEEEEE-eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCcccccccccc
Q psy1955 23 VIQRPANALKELLENSLDAKS-----TSIQVTVK-QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTF 96 (512)
Q Consensus 23 ~i~~~~~~v~eLv~Ns~dA~a-----~~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~ 96 (512)
.+..+..++.|++.||+.++- ..|.|.+. .++...|.|.|+|.||+++.++..+.++++.+... ..
T Consensus 39 ~~~~l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~~~~l~i~V~D~G~g~d~~~~~~~~~p~~~~~~~~--------~~ 110 (161)
T PRK04069 39 DIEDMKIAVSEACTNAVQHAYKEDEVGEIHIRFEIYEDRLEIVVADNGVSFDYETLKSKLGPYDISKPIE--------DL 110 (161)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEECCEEEEEEEECCcCCChHHhccccCCCCCCCccc--------cc
Confidence 445678899999999999763 35677663 45577899999999999888877777766544221 11
Q ss_pred CCcchhhhhhhccc-eEEEEE
Q psy1955 97 GFRGEALASISHVA-HLTIIT 116 (512)
Q Consensus 97 G~rGeaL~si~~~s-~l~i~S 116 (512)
...|.+|+-+..++ ++++.+
T Consensus 111 ~~~G~GL~li~~l~d~v~~~~ 131 (161)
T PRK04069 111 REGGLGLFLIETLMDDVTVYK 131 (161)
T ss_pred CCCceeHHHHHHHHHhEEEEc
Confidence 12355666666666 488774
No 98
>PRK10547 chemotaxis protein CheA; Provisional
Probab=97.23 E-value=0.00077 Score=75.60 Aligned_cols=84 Identities=21% Similarity=0.388 Sum_probs=58.0
Q ss_pred HHHHHHHHHccccCCC--------------CeEEEEEE-eCCeeeEEEEeCCCCCCHHhHH-------------------
Q psy1955 28 ANALKELLENSLDAKS--------------TSIQVTVK-QGGLKLLQIQDNGTGIRKEDMD------------------- 73 (512)
Q Consensus 28 ~~~v~eLv~Ns~dA~a--------------~~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~~------------------- 73 (512)
...+.+||.||+|+|- ..|.|... .++...|.|.|||.||+++.+.
T Consensus 387 ~dpL~hLirNAidHgie~p~~R~~~gkp~~G~I~l~a~~~~~~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~ls~~e~ 466 (670)
T PRK10547 387 IDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNLILSAEHQGGNICIEVTDDGAGLNRERILAKAASQGLAVSENMSDEEV 466 (670)
T ss_pred HHHHHHHHHHHHHhhccchhhHHhcCCCCCCceEEEEEEcCCEEEEEEEeCCCCCCHHHHHHHHHHcCCCccccCCHHHH
Confidence 3346799999999872 25777774 4556679999999999987654
Q ss_pred --HHHhhcccCCCCCccccccccccCCcchhhhhh----hcc-ceEEEEEec
Q psy1955 74 --IVCERFTTSKLTQFEDLNSISTFGFRGEALASI----SHV-AHLTIITKT 118 (512)
Q Consensus 74 --~~~~~~~tsK~~~~~d~~~~~~~G~rGeaL~si----~~~-s~l~i~S~~ 118 (512)
.+|.++|+++-.. ....-||.+|.-. ..+ +.++|.|..
T Consensus 467 ~~lIF~pgfst~~~~-------~~~sGrGvGL~iVk~~ve~lgG~I~v~S~~ 511 (670)
T PRK10547 467 GMLIFAPGFSTAEQV-------TDVSGRGVGMDVVKRNIQEMGGHVEIQSKQ 511 (670)
T ss_pred HHHhhcCCccccccc-------ccCCCCchhHHHHHHHHHHcCCEEEEEecC
Confidence 5888888776321 1234567777433 233 369999875
No 99
>PRK03660 anti-sigma F factor; Provisional
Probab=97.19 E-value=0.0014 Score=58.91 Aligned_cols=84 Identities=13% Similarity=0.213 Sum_probs=57.6
Q ss_pred cccCHHHHHHHHHHccccCCC-----CeEEEEEE-eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCcccccccccc
Q psy1955 23 VIQRPANALKELLENSLDAKS-----TSIQVTVK-QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTF 96 (512)
Q Consensus 23 ~i~~~~~~v~eLv~Ns~dA~a-----~~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~ 96 (512)
.+..+..++.|++.||+.++. ..|.|.+. .++...++|.|+|.||++ ....++++++++...
T Consensus 36 ~~~~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~~~~~l~i~I~D~G~g~~~--~~~~~~~~~~~~~~~---------- 103 (146)
T PRK03660 36 ELTEIKTAVSEAVTNAIIHGYENNPDGVVYIEVEIEEEELEITVRDEGKGIED--IEEAMQPLYTTKPEL---------- 103 (146)
T ss_pred HHHhHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEECCCEEEEEEEEccCCCCh--HHHhhCCCcccCCCC----------
Confidence 346788999999999998652 35777763 344567999999999985 557777877654211
Q ss_pred CCcchhhhhhhccc-eEEEEEec
Q psy1955 97 GFRGEALASISHVA-HLTIITKT 118 (512)
Q Consensus 97 G~rGeaL~si~~~s-~l~i~S~~ 118 (512)
+..|.+|+-+..+. .+.+.+..
T Consensus 104 ~~~GlGL~i~~~~~~~i~~~~~~ 126 (146)
T PRK03660 104 ERSGMGFTVMESFMDEVEVESEP 126 (146)
T ss_pred CCccccHHHHHHhCCeEEEEecC
Confidence 12466666555555 58777654
No 100
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=97.13 E-value=0.0012 Score=79.37 Aligned_cols=85 Identities=18% Similarity=0.323 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHccccCCCC-eEEEEEE------eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCC
Q psy1955 26 RPANALKELLENSLDAKST-SIQVTVK------QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGF 98 (512)
Q Consensus 26 ~~~~~v~eLv~Ns~dA~a~-~i~i~~~------~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~ 98 (512)
.+.+++.||+.||+++... .+.|.+. .+....|.|.|||+||++++++.+|++|++++... ..+-
T Consensus 828 ~l~qvl~NLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~--------~~~G 899 (1197)
T PRK09959 828 AFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSAGR--------QQTG 899 (1197)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEEEeeecCCceEEEEEEEEcCCCCCHHHHHHhhccccccccCC--------CCCC
Confidence 5788999999999998653 3444431 12234689999999999999999999999876421 1123
Q ss_pred cchhhhhhhcc-----ceEEEEEec
Q psy1955 99 RGEALASISHV-----AHLTIITKT 118 (512)
Q Consensus 99 rGeaL~si~~~-----s~l~i~S~~ 118 (512)
.|.+|+-...+ +++++.|..
T Consensus 900 ~GLGL~i~~~iv~~~gG~i~v~s~~ 924 (1197)
T PRK09959 900 SGLGLMICKELIKNMQGDLSLESHP 924 (1197)
T ss_pred cCchHHHHHHHHHHcCCEEEEEeCC
Confidence 46666533222 468888875
No 101
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=97.06 E-value=0.0013 Score=60.76 Aligned_cols=87 Identities=13% Similarity=0.129 Sum_probs=60.6
Q ss_pred CcccCHHHHHHHHHHccccCCC-----CeEEEEE-EeCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccc
Q psy1955 22 EVIQRPANALKELLENSLDAKS-----TSIQVTV-KQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSIST 95 (512)
Q Consensus 22 ~~i~~~~~~v~eLv~Ns~dA~a-----~~i~i~~-~~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~ 95 (512)
+.+..+.-++.|++.||+.++- ..|.|.+ ..++...|.|.|+|.|++++.++..+.++...+.. ..
T Consensus 38 ~~~~~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~~~~l~i~V~D~G~gfd~~~~~~~~~~~~~~~~~--------~~ 109 (159)
T TIGR01924 38 DDIEDLKIAVSEACTNAVKHAYKEGENGEIGISFHIYEDRLEIIVSDQGDSFDMDTFKQSLGPYDGSEPI--------DD 109 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEeCCEEEEEEEEcccccCchhhccccCCCCCCCCc--------cc
Confidence 4456688899999999999762 4677776 34556789999999999988877666554443321 11
Q ss_pred cCCcchhhhhhhccce-EEEEE
Q psy1955 96 FGFRGEALASISHVAH-LTIIT 116 (512)
Q Consensus 96 ~G~rGeaL~si~~~s~-l~i~S 116 (512)
+.-.|.+|+-+-.+++ +.+.+
T Consensus 110 ~~~~G~GL~Li~~L~D~v~~~~ 131 (159)
T TIGR01924 110 LREGGLGLFLIETLMDEVEVYE 131 (159)
T ss_pred CCCCccCHHHHHHhccEEEEEe
Confidence 2234677777778875 77765
No 102
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=96.89 E-value=0.0013 Score=68.67 Aligned_cols=61 Identities=31% Similarity=0.361 Sum_probs=52.2
Q ss_pred cCHHHHHHHHHHccccCC---CCeEEEEE--EeCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCC
Q psy1955 25 QRPANALKELLENSLDAK---STSIQVTV--KQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLT 85 (512)
Q Consensus 25 ~~~~~~v~eLv~Ns~dA~---a~~i~i~~--~~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~ 85 (512)
-++.+|+-+|+-||+||. |..|.|.. +.++..+|-|.|||.|-+.+-++.++.||.|||--
T Consensus 563 v~ieQVlvNl~~NaldA~~h~~p~i~~~~~~~~~e~l~i~i~DnGqGwp~~l~dkLl~PFttsK~v 628 (673)
T COG4192 563 VSIEQVLVNLIVNALDASTHFAPWIKLIALGTEQEMLRIAIIDNGQGWPHELVDKLLTPFTTSKEV 628 (673)
T ss_pred hhHHHHHHHHHHHHHhhhccCCceEEEEeecCcccceEEEEecCCCCCchhHHHHhcCCccccccc
Confidence 478999999999999996 45576666 35666789999999999999999999999999954
No 103
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=96.87 E-value=0.0033 Score=70.72 Aligned_cols=156 Identities=19% Similarity=0.238 Sum_probs=90.2
Q ss_pred HHHHHHHHhcCCCCccee---------ecceeeEEEEEccCceeeEeecCCCCCCCcchhhhhhhccccCCcccccc-c-
Q psy1955 292 VQSMLEKTLLGSNTSRVF---------YTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFED-L- 360 (512)
Q Consensus 292 I~~~l~~~l~~~~~~r~~---------~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~~~~~~~TSKi~~~~d-l- 360 (512)
||++|.|+.+|.+.-|.. ......|.|.+...+ ..+.|.|||.||..+|+...-..-+.|=-..|.. +
T Consensus 30 lRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~-~~L~I~DnGiGMt~edl~~~LgtIa~SGt~~f~~~~~ 108 (701)
T PTZ00272 30 LRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKEN-KTLTVEDNGIGMTKADLVNNLGTIARSGTKAFMEALE 108 (701)
T ss_pred HHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEcCCC-CEEEEEECCCCCCHHHHHHHhhhhhhcchHHHHHHhh
Confidence 888999998886432210 011223566554433 3689999999999999887443333320011100 0
Q ss_pred --cccccccccchhhhhHhhhc-ceEEEEecCCCCCceEEEEecCccc--ccccccCCCCCceEEehhhcccchhhhccc
Q psy1955 361 --NSISTFGFRGEALASISHVA-HLTIITKTKTSPCAYRASYIDSKLK--DPIKPCAGNQGTQIIAEDLFYNIPTRRKAL 435 (512)
Q Consensus 361 --~~~~t~GfRGeALaSi~~~s-~l~I~T~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~GTtV~V~~lF~n~PvRrk~~ 435 (512)
......|--|--.+|.-.+| .++|+||..++ .+|.|...+++.- ........++||+|++ .+
T Consensus 109 ~~~~~~~iGqFGvGfyS~Fmvad~V~V~Srs~~~-~~~~W~s~~~g~y~i~~~~~~~~~~GT~I~L------------~L 175 (701)
T PTZ00272 109 AGGDMSMIGQFGVGFYSAYLVADRVTVTSKNNSD-ESYVWESSAGGTFTITSTPESDMKRGTRITL------------HL 175 (701)
T ss_pred ccCCccccCCCCcceEEEEEeccEEEEEEecCCC-ceEEEEECCCCcEEEEeCCCCCCCCCCEEEE------------EE
Confidence 11234566666666666677 49999998764 5777766543211 1111123479999998 34
Q ss_pred CCChH---HHHHHHHHHHHHhhcCC-CeEE
Q psy1955 436 KQPSE---EYNKIADVVSRYAVHNP-HVGF 461 (512)
Q Consensus 436 ~~~~~---e~~~i~~~l~~yaL~~p-~v~f 461 (512)
+.... +-.+|+.+|..|+=.-| .|.+
T Consensus 176 k~d~~ef~~~~~i~~li~kYs~fi~~PI~l 205 (701)
T PTZ00272 176 KEDQMEYLEPRRLKELIKKHSEFIGYDIEL 205 (701)
T ss_pred CCchHHhccHHHHHHHHHHhccccCcceEE
Confidence 43222 23478899999986433 3444
No 104
>PTZ00130 heat shock protein 90; Provisional
Probab=96.79 E-value=0.0048 Score=69.87 Aligned_cols=180 Identities=18% Similarity=0.223 Sum_probs=104.7
Q ss_pred eEEEeecCCCcceeecchhhHHHH---------------HHHHHHHHhcCCCCccee-------ec--ceeeEEEEEccC
Q psy1955 268 NVDVNVHPTKHEVHFLHEDTIIER---------------VQSMLEKTLLGSNTSRVF-------YT--QSTSIQVTVKQG 323 (512)
Q Consensus 268 ~iDVNvhP~K~eV~f~~~~~I~~~---------------I~~~l~~~l~~~~~~r~~-------~~--q~~~i~i~~~~~ 323 (512)
.||=|-.|+...-.+.-+.++-.. ||++|.|+.+|.+.-|.. .. ....|.|.+...
T Consensus 54 ~~~~~~~~~~~~e~~~FQaEv~~Lldiii~sLYS~keIFLRELISNAsDAldKlr~~~lt~~~~~~~~~~~~I~I~~D~~ 133 (814)
T PTZ00130 54 EIEDGEKPTSGIEQHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKE 133 (814)
T ss_pred ccccCCCCCcccceeehHHHHHHHHHHHhhccCCCCCceeehHhhhHHHHHHHHHHHHcCCchhcCCCCCceEEEEECCC
Confidence 567777787775554444443322 788999998886422210 00 112355554322
Q ss_pred ceeeEeecCCCCCCCcchhhhhhhccccCCccccc-cc----cccccccccchhhhhHhhhc-ceEEEEecCCCCCceEE
Q psy1955 324 GLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFE-DL----NSISTFGFRGEALASISHVA-HLTIITKTKTSPCAYRA 397 (512)
Q Consensus 324 ~~~~i~v~Dng~gi~~~~l~~~~~~~~TSKi~~~~-dl----~~~~t~GfRGeALaSi~~~s-~l~I~T~~~~~~~~~~~ 397 (512)
...+.+.|||.||..+++..--..-+.|--..|. .+ ....-+|=-|--.+|.-.|| .++|+||..+ ..+|.|
T Consensus 134 -~~tLtI~DnGIGMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVAdkV~V~Trs~~-~~~~~W 211 (814)
T PTZ00130 134 -KNILSITDTGIGMTKEDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNN-DEQYIW 211 (814)
T ss_pred -CCEEEEEECCCCCCHHHHHHHhhhhcccccHHHHHHhhccCCCcccccccccchhheeeecCEEEEEEcCCC-CceEEE
Confidence 2368999999999999998644343333222221 11 11235666777788888888 5999999876 446776
Q ss_pred EEecCccc--cccc-ccCCCCCceEEehhhcccchhhhcccCCChH---HHHHHHHHHHHHhhcCC-CeEE
Q psy1955 398 SYIDSKLK--DPIK-PCAGNQGTQIIAEDLFYNIPTRRKALKQPSE---EYNKIADVVSRYAVHNP-HVGF 461 (512)
Q Consensus 398 ~~~~~~~~--~~~~-~~~~~~GTtV~V~~lF~n~PvRrk~~~~~~~---e~~~i~~~l~~yaL~~p-~v~f 461 (512)
...+++.- .... ....++||+|++ .++.... +-.+|+.+|..|+-.-| .|.+
T Consensus 212 ~s~g~g~y~I~e~~~~~~~~rGT~I~L------------hLked~~efl~~~~ik~likkYS~fI~~PI~l 270 (814)
T PTZ00130 212 ESTADAKFTIYKDPRGSTLKRGTRISL------------HLKEDATNLMNDKKLVDLISKYSQFIQYPIYL 270 (814)
T ss_pred EECCCCcEEEEECCCCCCCCCCcEEEE------------EECCchhhhccHHHHHHHHHHhhccCCCCEEE
Confidence 55433211 1111 123479999998 2332211 23578899999986533 3544
No 105
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=96.76 E-value=0.0027 Score=71.70 Aligned_cols=90 Identities=19% Similarity=0.424 Sum_probs=64.4
Q ss_pred ccCHHHHHHHHHHccccCCC--------------CeEEEEE-EeCCeeeEEEEeCCCCCCHHhH----------------
Q psy1955 24 IQRPANALKELLENSLDAKS--------------TSIQVTV-KQGGLKLLQIQDNGTGIRKEDM---------------- 72 (512)
Q Consensus 24 i~~~~~~v~eLv~Ns~dA~a--------------~~i~i~~-~~~~~~~i~v~DnG~Gi~~~~~---------------- 72 (512)
++.+..=+-.||-||+|+|- ..|.++- ..++...|+|.|||-||+++.+
T Consensus 430 lE~l~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A~~~gn~ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~ 509 (716)
T COG0643 430 LERLGDPLTHLVRNAVDHGIETPEERRAAGKPEEGTITLSAYHEGNNIVIEVSDDGAGIDREKIREKAIERGLITEEEAE 509 (716)
T ss_pred HHHhcccHHHHHhcchhccCCCHHHHHHcCCCCcceEEEEEEcCCCeEEEEEeeCCCCCCHHHHHHHHHHcCCCChHHhc
Confidence 34444457789999999982 2566666 4677788999999999998732
Q ss_pred --------HHHHhhcccCCCCCccccccccccCCcchhh----hhhhccc-eEEEEEecCC
Q psy1955 73 --------DIVCERFTTSKLTQFEDLNSISTFGFRGEAL----ASISHVA-HLTIITKTKT 120 (512)
Q Consensus 73 --------~~~~~~~~tsK~~~~~d~~~~~~~G~rGeaL----~si~~~s-~l~i~S~~~~ 120 (512)
..+|.++|+++- ...| +--||.+| ..|-++. .+.|.|+...
T Consensus 510 ~lSd~Ei~~LIF~PGFSTa~-~Vtd------vSGRGVGMDVVk~~I~~LgG~I~V~S~~G~ 563 (716)
T COG0643 510 TLSDEEILNLIFAPGFSTAE-QVTD------VSGRGVGMDVVKTNIEQLGGSISVSSEPGK 563 (716)
T ss_pred cCCHHHHHHHHhcCCCCcch-hhhc------ccCCccCHHHHHHHHHHcCCEEEEEecCCC
Confidence 356777777762 2333 34588887 6888886 7999999643
No 106
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.013 Score=64.30 Aligned_cols=159 Identities=20% Similarity=0.208 Sum_probs=92.5
Q ss_pred HHHHHHHHhcCCCCccee------e---cceeeEEEEEccCceeeEeecCCCCCCCcchhhhhhhccccC----Cccccc
Q psy1955 292 VQSMLEKTLLGSNTSRVF------Y---TQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTS----KLTQFE 358 (512)
Q Consensus 292 I~~~l~~~l~~~~~~r~~------~---~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~~~~~~~TS----Ki~~~~ 358 (512)
+|++|.|+-++.+.-|.- . .....|+|..... ...+++.|||.||..+++...-..-|-| .+.++.
T Consensus 32 LRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~Dk~-~kTLtI~DNGIGMT~~Ev~~~LgTIAkSgT~~F~~~l~ 110 (623)
T COG0326 32 LRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFDKD-NKTLTISDNGIGMTKDEVIENLGTIAKSGTKEFLESLS 110 (623)
T ss_pred HHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEccc-CCEEEEEeCCCCCCHHHHHHHHHHhhhccHHHHHHHhc
Confidence 777887777765432210 0 0123355555532 2368999999999999988732221111 111111
Q ss_pred -cccccccccccchhhhhHhhhc-ceEEEEecCCCCCceEEEEecCcccccccccCCC-CCceEEehhhcccchhhhccc
Q psy1955 359 -DLNSISTFGFRGEALASISHVA-HLTIITKTKTSPCAYRASYIDSKLKDPIKPCAGN-QGTQIIAEDLFYNIPTRRKAL 435 (512)
Q Consensus 359 -dl~~~~t~GfRGeALaSi~~~s-~l~I~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~GTtV~V~~lF~n~PvRrk~~ 435 (512)
|-..-.-.|==|--++|---|| .|+|+||.++++.++.|...+.+.-..-.....+ +||+|+. .+
T Consensus 111 ~~~~~~~lIGQFGVGFYSaFmVAdkV~V~T~~~~~~~~~~W~S~g~g~ytv~~~~~~~~~GT~I~L------------~L 178 (623)
T COG0326 111 EDQKDSDLIGQFGVGFYSAFMVADKVTVITRSAGEDEAYHWESDGEGEYTVEDIDKEPRRGTEITL------------HL 178 (623)
T ss_pred cccccccccccccchhhheeeeeeeEEEEeccCCCCcceEEEEcCCCceEEeeccCCCCCCcEEEE------------EE
Confidence 1012234666677788888888 4999999999888886665543321111111233 6999998 44
Q ss_pred CCCh---HHHHHHHHHHHHHhhcCCC-eEEEE
Q psy1955 436 KQPS---EEYNKIADVVSRYAVHNPH-VGFTL 463 (512)
Q Consensus 436 ~~~~---~e~~~i~~~l~~yaL~~p~-v~f~l 463 (512)
+..- .+-.+|+++|+.|+-.-|- |.+..
T Consensus 179 k~~e~efl~~~rl~~ivkkYSd~i~~PI~~~~ 210 (623)
T COG0326 179 KEEEDEFLEEWRLREIVKKYSDHIAYPIYIEG 210 (623)
T ss_pred CCchHHHhhhhHHHHHHHHHhcccccceEEee
Confidence 4322 1234689999999975432 54544
No 107
>KOG0019|consensus
Probab=96.50 E-value=0.0051 Score=66.40 Aligned_cols=115 Identities=20% Similarity=0.306 Sum_probs=75.3
Q ss_pred ccccChHHHHHHhcCCcccCHHHHHHHHHHccccCC--------------CCeEEEEEE-eCCeeeEEEEeCCCCCCHHh
Q psy1955 7 IKKLDETVVNRIAAGEVIQRPANALKELLENSLDAK--------------STSIQVTVK-QGGLKLLQIQDNGTGIRKED 71 (512)
Q Consensus 7 i~~l~~~~~~~i~s~~~i~~~~~~v~eLv~Ns~dA~--------------a~~i~i~~~-~~~~~~i~v~DnG~Gi~~~~ 71 (512)
|.+|-+-+++..-|+ -.--+.|||-||-||- .....|++. +.....++|.|.|.||+.+|
T Consensus 43 ~~qLm~lii~s~YS~-----kEvFlRELISNaSDAldKiRy~~lt~~~~~~~~l~I~i~~nk~~~tlti~DtGIGMTk~d 117 (656)
T KOG0019|consen 43 TNQLMDIVAKSLYSH-----KEVFLRELISNASDALEKLRYLELKGDEKALPELEIRIITNKDKRTITIQDTGIGMTKED 117 (656)
T ss_pred HHhHHHHHHHHhhcc-----hHHHHHhhhccccchHHHHHHHhhcCccccccceeEEeccCCCcceEEEEecCCCcCHHH
Confidence 455556666655555 3456899999999983 123456662 23345699999999999999
Q ss_pred HHHHHhhcc---cCCCC-Ccc-ccccccccCCcchhhhhhhccce-EEEEEecCCCCceEEE
Q psy1955 72 MDIVCERFT---TSKLT-QFE-DLNSISTFGFRGEALASISHVAH-LTIITKTKTSPCAYRW 127 (512)
Q Consensus 72 ~~~~~~~~~---tsK~~-~~~-d~~~~~~~G~rGeaL~si~~~s~-l~i~S~~~~~~~~~~~ 127 (512)
|..-.-.-+ |.++- ... .-....-.|..|.+.+|---+++ |+|+||+.++. +|.|
T Consensus 118 LvnnLGTIAkSGtK~Fmealkea~ad~~~IGQFGvGFYSaylVAdkV~V~tk~~~~e-~y~W 178 (656)
T KOG0019|consen 118 LVNNLGTIAKSGSKAFLEALKEAEAESNLIGQFGVGFYSAFMVADRVVVTTRHPADE-GLQW 178 (656)
T ss_pred HHhhhhhhhhcccHHHHHHHHhcccchhhhhhcccchhhhhhhhheeEEeeccCCCc-ceee
Confidence 874321111 11110 011 11234567888999999999994 99999988765 7777
No 108
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=96.47 E-value=0.0089 Score=65.27 Aligned_cols=44 Identities=20% Similarity=0.278 Sum_probs=35.6
Q ss_pred HHHHHHHHHHccccC-CCCeEEEEEE-eCCeeeEEEEeCCCCCCHH
Q psy1955 27 PANALKELLENSLDA-KSTSIQVTVK-QGGLKLLQIQDNGTGIRKE 70 (512)
Q Consensus 27 ~~~~v~eLv~Ns~dA-~a~~i~i~~~-~~~~~~i~v~DnG~Gi~~~ 70 (512)
+..++.|++.||+++ +++.|.|.+. .++...++|.|||+||+++
T Consensus 411 L~ril~nlL~NAiKha~~~~I~I~l~~~~~~i~l~V~DnG~Gi~~~ 456 (495)
T PRK11644 411 LFRVCQEGLNNIVKHADASAVTLQGWQQDERLMLVIEDDGSGLPPG 456 (495)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEEEcCCEEEEEEEECCCCCCcC
Confidence 556899999999995 4677888874 4455679999999999965
No 109
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=96.44 E-value=0.0019 Score=71.71 Aligned_cols=88 Identities=24% Similarity=0.315 Sum_probs=62.2
Q ss_pred ccCHHHHHHHHHHcccc---C---C-CCeEEEEEEeCCeeeEEEEeCCCCCCHHhHHH------------HHhhcccCCC
Q psy1955 24 IQRPANALKELLENSLD---A---K-STSIQVTVKQGGLKLLQIQDNGTGIRKEDMDI------------VCERFTTSKL 84 (512)
Q Consensus 24 i~~~~~~v~eLv~Ns~d---A---~-a~~i~i~~~~~~~~~i~v~DnG~Gi~~~~~~~------------~~~~~~tsK~ 84 (512)
++-+..++-|+|+||.| | | ++.|.|.++ ++ .|+|.|||.|||-+..+. +..-|+.+|+
T Consensus 43 ~~GL~hi~~EIldNavDe~~~~~~g~~~~I~V~i~-dg--sisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgkF 119 (602)
T PHA02569 43 VPGLVKIIDEIIDNSVDEAIRTNFKFANKIDVTIK-NN--QVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSNF 119 (602)
T ss_pred cccceeeeehhhhhhhhhhhccCCCCCcEEEEEEc-CC--EEEEEECCCcccCCcccccccccccceEEEEEeecccccc
Confidence 35567788999999999 3 4 889999998 54 489999999999754321 1233455666
Q ss_pred CCccccccccccCCcchhhhhhhccce-EEEEEec
Q psy1955 85 TQFEDLNSISTFGFRGEALASISHVAH-LTIITKT 118 (512)
Q Consensus 85 ~~~~d~~~~~~~G~rGeaL~si~~~s~-l~i~S~~ 118 (512)
. |-.+ -+=|..|.++...-++|. ++|.++.
T Consensus 120 d---~~yk-vSGGlhGVG~svvNaLS~~~~V~v~~ 150 (602)
T PHA02569 120 D---DTNR-VTGGMNGVGSSLTNFFSVLFIGETCD 150 (602)
T ss_pred C---Ccce-eeCCcCCccceeeeccchhhheEEEc
Confidence 2 3222 356888999888888885 7777653
No 110
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=96.25 E-value=0.011 Score=51.51 Aligned_cols=79 Identities=16% Similarity=0.178 Sum_probs=56.2
Q ss_pred cccCHHHHHHHHHHccccCCCC-----eEEEEEE-eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCcccccccccc
Q psy1955 23 VIQRPANALKELLENSLDAKST-----SIQVTVK-QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTF 96 (512)
Q Consensus 23 ~i~~~~~~v~eLv~Ns~dA~a~-----~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~ 96 (512)
....+.-|+.|++.||+.++.. .|.|.+. .++...|.|.|+|.|+++...+..-... ....
T Consensus 28 ~~~~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~~~~~l~i~v~D~G~~~d~~~~~~~~~~~-------------~~~~ 94 (125)
T PF13581_consen 28 DRDDLELAVSEALTNAVEHGYPGDPDGPVDVRLEVDPDRLRISVRDNGPGFDPEQLPQPDPWE-------------PDSL 94 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEEcCCEEEEEEEECCCCCChhhccCccccc-------------CCCC
Confidence 3456788999999999998764 5777763 3445679999999999987653322110 0334
Q ss_pred CCcchhhhhhhccce-EEE
Q psy1955 97 GFRGEALASISHVAH-LTI 114 (512)
Q Consensus 97 G~rGeaL~si~~~s~-l~i 114 (512)
.-+|.+|+-|.++++ +.+
T Consensus 95 ~~~G~Gl~li~~l~D~~~~ 113 (125)
T PF13581_consen 95 REGGRGLFLIRSLMDEVDY 113 (125)
T ss_pred CCCCcCHHHHHHHHcEEEE
Confidence 456888888999885 877
No 111
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=96.25 E-value=0.013 Score=63.93 Aligned_cols=156 Identities=19% Similarity=0.289 Sum_probs=98.9
Q ss_pred HHHHHHHHHHhcCCCCcceeecceeeEEEEEccCceeeEeecCCCCCCCcchhhh---------hhhccccCCccccccc
Q psy1955 290 ERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDI---------VCERFTTSKLTQFEDL 360 (512)
Q Consensus 290 ~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~---------~~~~~~TSKi~~~~dl 360 (512)
+.|-+++.+++...... |+|.+..- ..++|.|||.||+-+--+. +..=||-+|++. +-
T Consensus 43 EVvDNsiDEalaG~~~~---------I~V~l~~d--~sisV~DnGRGIPvdiH~~~~~~~vEvI~T~LHAGGKFd~--~~ 109 (635)
T COG0187 43 EVVDNSIDEALAGYADR---------IDVTLHED--GSISVEDNGRGIPVDIHPKEKVSAVEVIFTVLHAGGKFDN--DS 109 (635)
T ss_pred EeeechHhHHhhCcCcE---------EEEEEcCC--CeEEEEECCCCCccccCCCCCCCceEEEEEeeccCcccCC--Cc
Confidence 44555666666554333 66776532 2699999999998654111 333488899875 22
Q ss_pred cccccccccchhhhhHhhhcc-eEEEEecCCCCCceEEEEecCccccccc---c-cCCCCCceEEehhhcccchhhhccc
Q psy1955 361 NSISTFGFRGEALASISHVAH-LTIITKTKTSPCAYRASYIDSKLKDPIK---P-CAGNQGTQIIAEDLFYNIPTRRKAL 435 (512)
Q Consensus 361 ~~~~t~GfRGeALaSi~~~s~-l~I~T~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~GTtV~V~~lF~n~PvRrk~~ 435 (512)
+.. +=|..|--.+-.-++|+ ++|.++..+ .-|+..|.+|....+.. . .....||+|+. ..-|.. |
T Consensus 110 Ykv-SGGLHGVG~SVVNALS~~l~v~v~r~g--k~y~q~f~~G~~~~~l~~ig~~~~~~~GT~V~F----~PD~~i---F 179 (635)
T COG0187 110 YKV-SGGLHGVGVSVVNALSTWLEVEVKRDG--KIYRQRFERGVPVTPLEVIGSTDTKKTGTKVRF----KPDPEI---F 179 (635)
T ss_pred cEe-ecCCCccceEEEecccceEEEEEEECC--EEEEEEEeCCCcCCCceecccCCCCCCccEEEE----EcChHh---c
Confidence 221 34556766666666775 777777764 34778888876542221 1 23467999986 333332 2
Q ss_pred CCChHHHHHHHHHHHHHhhcCCCeEEEEEECCc
Q psy1955 436 KQPSEEYNKIADVVSRYAVHNPHVGFTLKKQNE 468 (512)
Q Consensus 436 ~~~~~e~~~i~~~l~~yaL~~p~v~f~l~~~~~ 468 (512)
....=.+..+.+.|..+|-.++.|.+.|.+.-.
T Consensus 180 ~~~~f~~~~l~~RlrelA~L~~gl~I~l~d~r~ 212 (635)
T COG0187 180 GETEFDYEILKRRLRELAFLNKGVKITLTDERT 212 (635)
T ss_pred CCcccCHHHHHHHHHHHhccCCCCEEEEEeccC
Confidence 222334677899999999999999999987543
No 112
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=96.21 E-value=0.007 Score=72.27 Aligned_cols=101 Identities=19% Similarity=0.221 Sum_probs=68.5
Q ss_pred cccCHHHHHHHHHHccccC--------CCCeEEEEEEeCCeeeEEEEeCCCCCCHHhHH--------HHH-hhcccCCCC
Q psy1955 23 VIQRPANALKELLENSLDA--------KSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMD--------IVC-ERFTTSKLT 85 (512)
Q Consensus 23 ~i~~~~~~v~eLv~Ns~dA--------~a~~i~i~~~~~~~~~i~v~DnG~Gi~~~~~~--------~~~-~~~~tsK~~ 85 (512)
.++-+..++-|+|.||.|- .++.|.|.++.+.. .|.|.|||.|||-+..+ .+| .-|+.+|+.
T Consensus 54 ~vpGL~ki~dEIldNAvDe~~r~~~~g~~~~I~V~i~~d~g-~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGgkfd 132 (1388)
T PTZ00108 54 YVPGLYKIFDEILVNAADNKARDKGGHRMTYIKVTIDEENG-EISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSSNYD 132 (1388)
T ss_pred ccchhhhhHHHHhhhhhhhhcccCCCCCccEEEEEEeccCC-eEEEEecCCcccCCCCCCCCCccceEEEEEeeccccCC
Confidence 3467788999999999992 26889999986522 49999999999975322 222 334555653
Q ss_pred CccccccccccCCcchhhhhhhccce-EEEEEecCCCCceEEE
Q psy1955 86 QFEDLNSISTFGFRGEALASISHVAH-LTIITKTKTSPCAYRW 127 (512)
Q Consensus 86 ~~~d~~~~~~~G~rGeaL~si~~~s~-l~i~S~~~~~~~~~~~ 127 (512)
|-..--+-|..|-+....-++|. ++|.++......-|..
T Consensus 133 ---d~~yKvSGGlhGVGasvvNalS~~f~Vev~r~~~gk~y~q 172 (1388)
T PTZ00108 133 ---DTEKRVTGGRNGFGAKLTNIFSTKFTVECVDSKSGKKFKM 172 (1388)
T ss_pred ---CCceeeecccccCCccccccccceEEEEEEECCCCCEEEE
Confidence 32233456778888888888884 8888887633333444
No 113
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=96.17 E-value=0.013 Score=66.81 Aligned_cols=141 Identities=20% Similarity=0.326 Sum_probs=91.2
Q ss_pred EEEEEccCceeeEeecCCCCCCCcchhhh---------hhhccccCCcccc-------------cccc------------
Q psy1955 316 IQVTVKQGGLKLLQIQDNGTGIRKEDMDI---------VCERFTTSKLTQF-------------EDLN------------ 361 (512)
Q Consensus 316 i~i~~~~~~~~~i~v~Dng~gi~~~~l~~---------~~~~~~TSKi~~~-------------~dl~------------ 361 (512)
|.|.+..- ..++|.|||.||+-+--+. +..-|+.+|++.- .|..
T Consensus 153 I~V~i~~D--gsItV~DnGRGIPvd~h~k~g~s~~E~VlT~LhAGGKF~~~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~ 230 (903)
T PTZ00109 153 ITVVLHKD--GSVEISDNGRGIPCDVSEKTGKSGLETVLTVLHSGGKFQDTFPKNSRSDKSEDKNDTKSSKKGKSSHVKG 230 (903)
T ss_pred EEEEEcCC--CeEEEEeCCccccccccccCCCcceeEEEEEeccCccccCcccccccccccccccccccccccccccccc
Confidence 66666543 2699999999997633221 2334778888651 1111
Q ss_pred -----------cc-ccccccchhhhhHhhhcc-eEEEEecCCCCCceEEEEecCccccccc--ccC-CCCCceEEehhhc
Q psy1955 362 -----------SI-STFGFRGEALASISHVAH-LTIITKTKTSPCAYRASYIDSKLKDPIK--PCA-GNQGTQIIAEDLF 425 (512)
Q Consensus 362 -----------~~-~t~GfRGeALaSi~~~s~-l~I~T~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~GTtV~V~~lF 425 (512)
.. -+-|..|--++..-++|+ ++|.++..+- -|...|.+|....+.. .+. ...||+|+..
T Consensus 231 ~~~~~~~~~~~~YkvSGGLHGVG~SVVNALS~~l~VeV~RdGK--~y~q~F~rG~~v~pLkvig~~~~~tGT~VtF~--- 305 (903)
T PTZ00109 231 PKEAKEKESSQMYEYSSGLHGVGLSVVNALSSFLKVDVFKGGK--IYSIELSKGKVTKPLSVFSCPLKKRGTTIHFL--- 305 (903)
T ss_pred cccccccccCCcceecCcCCCcceeeeeeccCeEEEEEEECCE--EEEEEeCCCcccCCccccCCcCCCCceEEEEE---
Confidence 11 256778988888888885 8888887653 5778888886543322 222 4589999872
Q ss_pred ccchh-hhcccCC-Ch-------------HHHHHHHHHHHHHhhcCCCeEEEEEECC
Q psy1955 426 YNIPT-RRKALKQ-PS-------------EEYNKIADVVSRYAVHNPHVGFTLKKQN 467 (512)
Q Consensus 426 ~n~Pv-Rrk~~~~-~~-------------~e~~~i~~~l~~yaL~~p~v~f~l~~~~ 467 (512)
|- .+- |.. .. =.+..|.+.+..+|-.+|.+++.|.+..
T Consensus 306 ---PD~~~I-F~~~~~~~~~~~~~~~~~~F~~d~L~~RLrElAfLNpGL~I~L~DeR 358 (903)
T PTZ00109 306 ---PDYKHI-FKTHHQHTETEEEEGCKNGFNLDLIKNRIHELSYLNPGLTFYLVDER 358 (903)
T ss_pred ---eCcchh-cCccccccccccccccccccCHHHHHHHHHHHhccCCCcEEEEEecC
Confidence 32 111 111 10 1366788999999999999999999653
No 114
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=96.16 E-value=0.017 Score=49.14 Aligned_cols=84 Identities=23% Similarity=0.372 Sum_probs=55.9
Q ss_pred chhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccC-ceeeEeecCCCCCCCcchhhhhhhccccCCccccccccc
Q psy1955 284 HEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQG-GLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNS 362 (512)
Q Consensus 284 ~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~-~~~~i~v~Dng~gi~~~~l~~~~~~~~TSKi~~~~dl~~ 362 (512)
++..+...+.+.+.|+++.+..... |.|..... +.-.+.+.|+|.||+++++..+..++.+.+.+ .
T Consensus 2 d~~~l~~il~~ll~Na~~~~~~~~~-------I~i~~~~~~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~~----~-- 68 (111)
T PF02518_consen 2 DPDRLRQILSELLDNAIKHSPEGGK-------IDITIEEDDDHLSIEISDNGVGIPPEELEKLFEPFFTSDKS----E-- 68 (111)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTSE-------EEEEEEEETTEEEEEEEESSSSTTHHHHHHHCSTTSHSSSS----S--
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCE-------EEEEEEEecCeEEEEEEeccccccccccccchhhccccccc----c--
Confidence 3456777888888888877544211 33444432 34478999999999999999999988877751 1
Q ss_pred cccccccchhhhhHhhhcc
Q psy1955 363 ISTFGFRGEALASISHVAH 381 (512)
Q Consensus 363 ~~t~GfRGeALaSi~~~s~ 381 (512)
...+-.|--|+....++.
T Consensus 69 -~~~~g~GlGL~~~~~~~~ 86 (111)
T PF02518_consen 69 -TSISGHGLGLYIVKQIAE 86 (111)
T ss_dssp -GGSSSSSHHHHHHHHHHH
T ss_pred -cccCCCChHHHHHHHHHH
Confidence 223336666666666653
No 115
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=96.15 E-value=0.0068 Score=64.83 Aligned_cols=45 Identities=33% Similarity=0.564 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHcccc-CCCCeEEEEEE-eCCeeeEEEEeCCCCCCHH
Q psy1955 26 RPANALKELLENSLD-AKSTSIQVTVK-QGGLKLLQIQDNGTGIRKE 70 (512)
Q Consensus 26 ~~~~~v~eLv~Ns~d-A~a~~i~i~~~-~~~~~~i~v~DnG~Gi~~~ 70 (512)
.+.++|.|-+-|++. |.|+.|.|.+. .+|...+.|.|||+||++.
T Consensus 481 HlLqIvREAlsNa~KHa~As~i~V~~~~~~g~~~~~VeDnG~Gi~~~ 527 (574)
T COG3850 481 HLLQIVREALSNAIKHAQASEIKVTVSQNDGQVTLTVEDNGVGIDEA 527 (574)
T ss_pred HHHHHHHHHHHHHHHhcccCeEEEEEEecCCeEEEEEeeCCcCCCCc
Confidence 366899999999999 78999999994 4477789999999999976
No 116
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=96.12 E-value=0.0026 Score=72.38 Aligned_cols=101 Identities=25% Similarity=0.319 Sum_probs=68.2
Q ss_pred HhcCCccc-----CHHHHHHHHHHcccc---CC-CCeEEEEEEeCCeeeEEEEeCCCCCCHHhHH--------HHH-hhc
Q psy1955 18 IAAGEVIQ-----RPANALKELLENSLD---AK-STSIQVTVKQGGLKLLQIQDNGTGIRKEDMD--------IVC-ERF 79 (512)
Q Consensus 18 i~s~~~i~-----~~~~~v~eLv~Ns~d---A~-a~~i~i~~~~~~~~~i~v~DnG~Gi~~~~~~--------~~~-~~~ 79 (512)
.+-|..|. -+..++-|+|+||+| || |+.|.|.+..++ .|+|.|||.|||-+..+ .++ .-|
T Consensus 116 kRPGMYIGst~~~GLhhLv~EIlDNSVDE~laG~~~~I~V~i~~Dg--sItV~DnGRGIPvd~h~k~g~s~~E~VlT~Lh 193 (903)
T PTZ00109 116 KRPGMYIGNTDEKGLHQLLFEILDNSVDEYLAGECNKITVVLHKDG--SVEISDNGRGIPCDVSEKTGKSGLETVLTVLH 193 (903)
T ss_pred cCCCceeCCCCCCcceEEEEEEeeccchhhccCCCcEEEEEEcCCC--eEEEEeCCccccccccccCCCcceeEEEEEec
Confidence 34455554 456789999999999 44 789999997665 48999999999976433 221 224
Q ss_pred ccCCCCCc-------------cccc-----------------------c-ccccCCcchhhhhhhccce-EEEEEecCC
Q psy1955 80 TTSKLTQF-------------EDLN-----------------------S-ISTFGFRGEALASISHVAH-LTIITKTKT 120 (512)
Q Consensus 80 ~tsK~~~~-------------~d~~-----------------------~-~~~~G~rGeaL~si~~~s~-l~i~S~~~~ 120 (512)
+.+|+..- .|.. . -.+-|..|.+++..-++|. ++|.++..+
T Consensus 194 AGGKF~~~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~YkvSGGLHGVG~SVVNALS~~l~VeV~RdG 272 (903)
T PTZ00109 194 SGGKFQDTFPKNSRSDKSEDKNDTKSSKKGKSSHVKGPKEAKEKESSQMYEYSSGLHGVGLSVVNALSSFLKVDVFKGG 272 (903)
T ss_pred cCccccCcccccccccccccccccccccccccccccccccccccccCCcceecCcCCCcceeeeeeccCeEEEEEEECC
Confidence 55565431 0000 0 1345788999998889985 888877643
No 117
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=96.07 E-value=0.03 Score=62.32 Aligned_cols=136 Identities=20% Similarity=0.201 Sum_probs=86.3
Q ss_pred EEEEEccCceeeEeecCCCCCCCcchhh------------hhhhccccCCccccccccccccccccchhhhhHhhhcc-e
Q psy1955 316 IQVTVKQGGLKLLQIQDNGTGIRKEDMD------------IVCERFTTSKLTQFEDLNSISTFGFRGEALASISHVAH-L 382 (512)
Q Consensus 316 i~i~~~~~~~~~i~v~Dng~gi~~~~l~------------~~~~~~~TSKi~~~~dl~~~~t~GfRGeALaSi~~~s~-l 382 (512)
|.|.+. . ..++|.|||.||+-+--. .++.-|+-+|++ |-+.+ +=|-.|--++..-.+|+ +
T Consensus 72 I~V~i~-d--gsisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgkFd---~~ykv-SGGlhGVG~svvNaLS~~~ 144 (602)
T PHA02569 72 IDVTIK-N--NQVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSNFD---DTNRV-TGGMNGVGSSLTNFFSVLF 144 (602)
T ss_pred EEEEEc-C--CEEEEEECCCcccCCcccccccccccceEEEEEeeccccccC---Cccee-eCCcCCccceeeeccchhh
Confidence 666666 2 269999999999763221 134557888883 32322 56777877777777885 7
Q ss_pred EEEEecCCCCCceEEEEecCccccc-ccccCCCCCceEEehhhcccchhhhcccC-CCh-HHHHHHHHHHHHHhhcCCCe
Q psy1955 383 TIITKTKTSPCAYRASYIDSKLKDP-IKPCAGNQGTQIIAEDLFYNIPTRRKALK-QPS-EEYNKIADVVSRYAVHNPHV 459 (512)
Q Consensus 383 ~I~T~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~GTtV~V~~lF~n~PvRrk~~~-~~~-~e~~~i~~~l~~yaL~~p~v 459 (512)
+|+++..+ ..|...|.+|....+ ........||+|+- +|--..|-. ... -.+..+.+.+...|-.+|.+
T Consensus 145 ~V~v~~~~--~~~~q~f~~G~~~~~~~~~~~~~~GT~V~F------~PD~~iF~~~~~~~~~~~~l~~Rl~elA~Ln~Gl 216 (602)
T PHA02569 145 IGETCDGK--NEVTVNCSNGAENISWSTKPGKGKGTSVTF------IPDFSHFEVNGLDQQYLDIILDRLQTLAVVFPDI 216 (602)
T ss_pred heEEEcCC--EEEEEEecCCcccCCcccCCCCCCccEEEE------EECHHHhCCCccCccHHHHHHHHHHHHhcCCCCC
Confidence 77665433 347777877753322 12223468999986 344333311 111 12567888999999999999
Q ss_pred EEEEEEC
Q psy1955 460 GFTLKKQ 466 (512)
Q Consensus 460 ~f~l~~~ 466 (512)
++.|.+.
T Consensus 217 ~I~l~de 223 (602)
T PHA02569 217 KFTFNGK 223 (602)
T ss_pred EEEEEec
Confidence 9999764
No 118
>KOG0020|consensus
Probab=96.03 E-value=0.0094 Score=62.74 Aligned_cols=94 Identities=27% Similarity=0.382 Sum_probs=63.1
Q ss_pred HHHHHHHHHccccCCC----------------CeEEEEE--EeCCeeeEEEEeCCCCCCHHhHHH-HH--hhcccC----
Q psy1955 28 ANALKELLENSLDAKS----------------TSIQVTV--KQGGLKLLQIQDNGTGIRKEDMDI-VC--ERFTTS---- 82 (512)
Q Consensus 28 ~~~v~eLv~Ns~dA~a----------------~~i~i~~--~~~~~~~i~v~DnG~Gi~~~~~~~-~~--~~~~ts---- 82 (512)
...++|||.||-||-- ....|.+ +.. ...+.|.|.|.||+++||-. ++ .+-.||
T Consensus 97 eIFLRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~Dke-~klLhi~DtGiGMT~edLi~NLGTIAkSGTs~Fl~ 175 (785)
T KOG0020|consen 97 EIFLRELISNASDALDKIRLLALTDKDVLGETEELEIKIKADKE-KKLLHITDTGIGMTREDLIKNLGTIAKSGTSEFLE 175 (785)
T ss_pred HHHHHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEeechh-hCeeeEecccCCccHHHHHHhhhhhhcccHHHHHH
Confidence 3569999999999831 1334444 444 34589999999999998763 22 122222
Q ss_pred CCCCccccccc--cccCCcchhhhhhhccce-EEEEEecCCCC
Q psy1955 83 KLTQFEDLNSI--STFGFRGEALASISHVAH-LTIITKTKTSP 122 (512)
Q Consensus 83 K~~~~~d~~~~--~~~G~rGeaL~si~~~s~-l~i~S~~~~~~ 122 (512)
|+....+...+ .-.|-.|.+.+|..-|++ |.|+||+.++.
T Consensus 176 Km~~~~~~~~~~~dlIGQFGVGFYsAfLVAD~vvVtsKhNdD~ 218 (785)
T KOG0020|consen 176 KMQDSGDSEGLMNDLIGQFGVGFYSAFLVADRVVVTSKHNDDS 218 (785)
T ss_pred HhhccccchhhHHHHHHhcchhhhhhhhhcceEEEEeccCCcc
Confidence 55544444322 456778889999999995 99999987643
No 119
>PLN03128 DNA topoisomerase 2; Provisional
Probab=96.00 E-value=0.0092 Score=70.42 Aligned_cols=91 Identities=21% Similarity=0.250 Sum_probs=63.7
Q ss_pred cccCHHHHHHHHHHcccc-C----CCCeEEEEEEeCCeeeEEEEeCCCCCCHHhHH--------HHH-hhcccCCCCCcc
Q psy1955 23 VIQRPANALKELLENSLD-A----KSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMD--------IVC-ERFTTSKLTQFE 88 (512)
Q Consensus 23 ~i~~~~~~v~eLv~Ns~d-A----~a~~i~i~~~~~~~~~i~v~DnG~Gi~~~~~~--------~~~-~~~~tsK~~~~~ 88 (512)
.++-+..++-|+|.||.| | .++.|.|.++.++. .|+|.|||.|||-+..+ .+| .-|+.+|+.
T Consensus 49 ~vpGL~ki~dEIldNAvDe~~~~g~~~~I~V~i~~~dg-sIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGgkFd--- 124 (1135)
T PLN03128 49 YVPGLYKIFDEILVNAADNKQRDPSMDSLKVDIDVEQN-TISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSSNFD--- 124 (1135)
T ss_pred cchhHHHHHHHHHHHHHHHhhhcCCCcEEEEEEEcCCC-eEEEEecCccccCCCCCCCCCccceEEEEeeccccccC---
Confidence 446778899999999999 3 25889999986322 49999999999975322 222 335556654
Q ss_pred ccccccccCCcchhhhhhhccce-EEEEEe
Q psy1955 89 DLNSISTFGFRGEALASISHVAH-LTIITK 117 (512)
Q Consensus 89 d~~~~~~~G~rGeaL~si~~~s~-l~i~S~ 117 (512)
|-.---+=|..|-+....-++|. ++|.++
T Consensus 125 d~~ykvSGGlhGvGasvvNaLS~~f~Vev~ 154 (1135)
T PLN03128 125 DNEKKTTGGRNGYGAKLANIFSTEFTVETA 154 (1135)
T ss_pred CccceeeccccCCCCeEEEeecCeEEEEEE
Confidence 32222456778888888888884 777776
No 120
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=95.84 E-value=0.022 Score=63.11 Aligned_cols=45 Identities=29% Similarity=0.429 Sum_probs=36.9
Q ss_pred HHHHHHHHHHccccC-CCCeEEEEEE-eCCeeeEEEEeCCCCCCHHh
Q psy1955 27 PANALKELLENSLDA-KSTSIQVTVK-QGGLKLLQIQDNGTGIRKED 71 (512)
Q Consensus 27 ~~~~v~eLv~Ns~dA-~a~~i~i~~~-~~~~~~i~v~DnG~Gi~~~~ 71 (512)
+..++.|++.||+.+ +++.|.|.+. .++...+.|.|||+||+++.
T Consensus 470 l~~il~ell~NA~kha~a~~i~V~~~~~~~~~~l~V~D~G~Gi~~~~ 516 (569)
T PRK10600 470 LLQIAREALSNALKHAQASEVVVTVAQNQNQVKLSVQDNGCGVPENA 516 (569)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEEEcCCEEEEEEEECCCCCCccc
Confidence 668999999999995 4678888884 34566799999999999753
No 121
>PLN03237 DNA topoisomerase 2; Provisional
Probab=95.70 E-value=0.015 Score=69.50 Aligned_cols=90 Identities=22% Similarity=0.272 Sum_probs=63.2
Q ss_pred ccCHHHHHHHHHHcccc-C----CCCeEEEEEEeCCeeeEEEEeCCCCCCHHhHH--------HHH-hhcccCCCCCccc
Q psy1955 24 IQRPANALKELLENSLD-A----KSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMD--------IVC-ERFTTSKLTQFED 89 (512)
Q Consensus 24 i~~~~~~v~eLv~Ns~d-A----~a~~i~i~~~~~~~~~i~v~DnG~Gi~~~~~~--------~~~-~~~~tsK~~~~~d 89 (512)
++-|..++-|+|.||.| + .++.|.|.|+.... .|+|.|||.|||-+..+ .+| .-|+.+|+. |
T Consensus 75 vpGL~kifdEIldNAvDe~~r~g~~~~I~V~I~~~~g-sIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFd---d 150 (1465)
T PLN03237 75 VPGLYKIFDEILVNAADNKQRDPKMDSLRVVIDVEQN-LISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYD---D 150 (1465)
T ss_pred cchhhhhHHHHhhhhHhHHhhcCCCCEEEEEEEcCCC-EEEEEecCccccCCCCCCCCCccceEEEEeeeccccCC---C
Confidence 56778999999999999 3 26889999974322 49999999999976322 222 334556653 3
Q ss_pred cccccccCCcchhhhhhhccce-EEEEEe
Q psy1955 90 LNSISTFGFRGEALASISHVAH-LTIITK 117 (512)
Q Consensus 90 ~~~~~~~G~rGeaL~si~~~s~-l~i~S~ 117 (512)
-..--+=|..|-+....-.+|. ++|.++
T Consensus 151 ~~yKvSGGlhGVGasvvNaLS~~f~Vev~ 179 (1465)
T PLN03237 151 NEKKTTGGRNGYGAKLTNIFSTEFVIETA 179 (1465)
T ss_pred CcceeeccccccCccccccccCeeEEEEE
Confidence 2223456888888887888884 777776
No 122
>KOG0787|consensus
Probab=95.45 E-value=0.037 Score=56.89 Aligned_cols=74 Identities=30% Similarity=0.420 Sum_probs=56.5
Q ss_pred cCHHHHHHHHHHccccCC----------CCeEEEEE-EeCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccc--
Q psy1955 25 QRPANALKELLENSLDAK----------STSIQVTV-KQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLN-- 91 (512)
Q Consensus 25 ~~~~~~v~eLv~Ns~dA~----------a~~i~i~~-~~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~-- 91 (512)
..+.-++-||+.||+.|. -.-|.|.+ ..+....|.|.|-|-||+.++++++|.-.||+-.....|-.
T Consensus 259 shL~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~gdeDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d~~~~ 338 (414)
T KOG0787|consen 259 SHLYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAKGDEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSSDNNRT 338 (414)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcceEEEEecCCCCcChhHHHHHHhhhcccCCCCCCCCCCc
Confidence 557789999999999983 23477777 33334579999999999999999999999988765554543
Q ss_pred -cccccCC
Q psy1955 92 -SISTFGF 98 (512)
Q Consensus 92 -~~~~~G~ 98 (512)
.+..|||
T Consensus 339 ~plaGfG~ 346 (414)
T KOG0787|consen 339 APLAGFGF 346 (414)
T ss_pred Cccccccc
Confidence 3466666
No 123
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=95.41 E-value=0.04 Score=60.12 Aligned_cols=87 Identities=18% Similarity=0.282 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHccccCCC---CeEEEEEE-eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCCcch
Q psy1955 26 RPANALKELLENSLDAKS---TSIQVTVK-QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFRGE 101 (512)
Q Consensus 26 ~~~~~v~eLv~Ns~dA~a---~~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~rGe 101 (512)
-+.++..||+.||+..+. ..|.|..+ .+..-.+.|.|||.||+++-++.+|..|- -+.+...|+--|.
T Consensus 636 ~l~qv~~NLi~Naik~~~~e~~~i~I~~~r~ed~~t~sV~dng~Gi~~a~~~riF~iFq--------Rl~s~~~y~gtG~ 707 (750)
T COG4251 636 QLGQVFQNLIANAIKFGGPENPDIEISAERQEDEWTFSVRDNGIGIDPAYFERIFVIFQ--------RLHSRDEYLGTGL 707 (750)
T ss_pred HHHHHHHHHHhhheecCCCCCCceEEeeeccCCceEEEecCCCCCcCHHHHHHHHHHHH--------hcCchhhhcCCCc
Confidence 467889999999999874 45788874 33344699999999999999999886643 2233344555788
Q ss_pred hhh---hhhccc--eEEEEEecCC
Q psy1955 102 ALA---SISHVA--HLTIITKTKT 120 (512)
Q Consensus 102 aL~---si~~~s--~l~i~S~~~~ 120 (512)
+|+ -|+.+. ++.+.|+..+
T Consensus 708 GL~I~kkI~e~H~G~i~vEs~~gE 731 (750)
T COG4251 708 GLAICKKIAERHQGRIWVESTPGE 731 (750)
T ss_pred cHHHHHHHHHHhCceEEEeecCCC
Confidence 875 444443 5888888644
No 124
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=95.35 E-value=0.024 Score=59.23 Aligned_cols=48 Identities=25% Similarity=0.393 Sum_probs=40.5
Q ss_pred cCHHHHHHHHHHcccc-CCCCeEEEEEE-eCCeeeEEEEeCCCCCCHHhH
Q psy1955 25 QRPANALKELLENSLD-AKSTSIQVTVK-QGGLKLLQIQDNGTGIRKEDM 72 (512)
Q Consensus 25 ~~~~~~v~eLv~Ns~d-A~a~~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~ 72 (512)
..+.-++.|.|-|++. |+|+.+.|.+. .++...++|.|||.|.+++..
T Consensus 278 ~~l~rivQEaltN~~rHa~A~~v~V~l~~~~~~l~l~V~DnG~Gf~~~~~ 327 (365)
T COG4585 278 DALFRIVQEALTNAIRHAQATEVRVTLERTDDELRLEVIDNGVGFDPDKE 327 (365)
T ss_pred HHHHHHHHHHHHHHHhccCCceEEEEEEEcCCEEEEEEEECCcCCCcccc
Confidence 4567789999999999 67999999994 455578999999999997763
No 125
>PRK13560 hypothetical protein; Provisional
Probab=95.09 E-value=0.026 Score=64.46 Aligned_cols=44 Identities=27% Similarity=0.480 Sum_probs=34.4
Q ss_pred HHHHHHHHHHccccCC-----CCeEEEEEEe--CCeeeEEEEeCCCCCCHH
Q psy1955 27 PANALKELLENSLDAK-----STSIQVTVKQ--GGLKLLQIQDNGTGIRKE 70 (512)
Q Consensus 27 ~~~~v~eLv~Ns~dA~-----a~~i~i~~~~--~~~~~i~v~DnG~Gi~~~ 70 (512)
+..++.||+.||+++. +..|.|.+.. ++...|.|.|||+||+++
T Consensus 712 ~~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~~~~v~i~V~D~G~GI~~~ 762 (807)
T PRK13560 712 CGLIISELLSNALKHAFPDGAAGNIKVEIREQGDGMVNLCVADDGIGLPAG 762 (807)
T ss_pred hHHHHHHHHHHHHHhhccCCCCceEEEEEEEcCCCEEEEEEEeCCCcCCcc
Confidence 4558999999999973 2467777743 456789999999999976
No 126
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=95.08 E-value=0.12 Score=46.90 Aligned_cols=94 Identities=20% Similarity=0.171 Sum_probs=61.3
Q ss_pred CcccCHHHHHHHHHHccccCC-C-----CeEEEEE-EeCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCcccccccc
Q psy1955 22 EVIQRPANALKELLENSLDAK-S-----TSIQVTV-KQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSIS 94 (512)
Q Consensus 22 ~~i~~~~~~v~eLv~Ns~dA~-a-----~~i~i~~-~~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~ 94 (512)
+.+..+..|+.|++.|++.++ + ..|.|.. ..++...+.|.|-|.|+. +++....+.+++.-. +.
T Consensus 36 ~~~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~~~~~~i~i~D~G~~~~--~~~~~~~~~~~~~~~----~~--- 106 (146)
T COG2172 36 VDIADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLDDGKLEIRIWDQGPGIE--DLEESLGPGDTTAEG----LQ--- 106 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEcCCeEEEEEEeCCCCCC--CHHHhcCCCCCCCcc----cc---
Confidence 455788999999999999964 3 4677666 244457799999998777 666666666544321 11
Q ss_pred ccCCcchhhhhhhccc-eEEEEEecCCCCceEEE
Q psy1955 95 TFGFRGEALASISHVA-HLTIITKTKTSPCAYRW 127 (512)
Q Consensus 95 ~~G~rGeaL~si~~~s-~l~i~S~~~~~~~~~~~ 127 (512)
-.|.+|+-+-.+. ++++........+++..
T Consensus 107 ---~~G~Gl~l~~~~~D~~~~~~~~~~~~~~~~~ 137 (146)
T COG2172 107 ---EGGLGLFLAKRLMDEFSYERSEDGRNRLTKI 137 (146)
T ss_pred ---cccccHHHHhhhheeEEEEeccCCceEEEEE
Confidence 2255555555555 58887655544455444
No 127
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=94.99 E-value=0.2 Score=60.25 Aligned_cols=141 Identities=18% Similarity=0.185 Sum_probs=86.1
Q ss_pred EEEEEccCceeeEeecCCCCCCCcchhh---------hhhhccccCCccccccccccccccccchhhhhHhhhcc-eEEE
Q psy1955 316 IQVTVKQGGLKLLQIQDNGTGIRKEDMD---------IVCERFTTSKLTQFEDLNSISTFGFRGEALASISHVAH-LTII 385 (512)
Q Consensus 316 i~i~~~~~~~~~i~v~Dng~gi~~~~l~---------~~~~~~~TSKi~~~~dl~~~~t~GfRGeALaSi~~~s~-l~I~ 385 (512)
|.|.+... ...++|.|||.||+-+--. ..+.-|+.+|++.-. ---|-|-.|--....-.+|+ ++|.
T Consensus 85 I~V~i~~d-~g~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGgkfdd~~---yKvSGGlhGVGasvvNalS~~f~Ve 160 (1388)
T PTZ00108 85 IKVTIDEE-NGEISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSSNYDDTE---KRVTGGRNGFGAKLTNIFSTKFTVE 160 (1388)
T ss_pred EEEEEecc-CCeEEEEecCCcccCCCCCCCCCccceEEEEEeeccccCCCCc---eeeecccccCCccccccccceEEEE
Confidence 55555532 0159999999999863211 135557888886421 11245556666655556674 8888
Q ss_pred EecCCCCCceEEEEecCc--cccc-ccccCC-CCCceEEehhhcccchhhhccc-CCChHHH-HHHHHHHHHHhhcCCCe
Q psy1955 386 TKTKTSPCAYRASYIDSK--LKDP-IKPCAG-NQGTQIIAEDLFYNIPTRRKAL-KQPSEEY-NKIADVVSRYAVHNPHV 459 (512)
Q Consensus 386 T~~~~~~~~~~~~~~~~~--~~~~-~~~~~~-~~GTtV~V~~lF~n~PvRrk~~-~~~~~e~-~~i~~~l~~yaL~~p~v 459 (512)
++......-|...|.+|. ...+ +..+.. ..||+|+- +|--..|= .....++ .-|.+.+..+|-.+|.|
T Consensus 161 v~r~~~gk~y~q~f~~Gm~~~~~p~i~~~~~~~~GT~VtF------~PD~~iF~~~~fd~d~~~ll~~Rl~dlA~ln~GL 234 (1388)
T PTZ00108 161 CVDSKSGKKFKMTWTDNMSKKSEPRITSYDGKKDYTKVTF------YPDYAKFGMTEFDDDMLRLLKKRVYDLAGCFGKL 234 (1388)
T ss_pred EEECCCCCEEEEEecCCCcCCCCCccCCCCCCCCceEEEE------EeCHHHcCCCccChHHHHHHHHHHHHHhcCCCCc
Confidence 888744456778887762 2222 222223 68999986 34333331 1122222 33778999999999999
Q ss_pred EEEEEEC
Q psy1955 460 GFTLKKQ 466 (512)
Q Consensus 460 ~f~l~~~ 466 (512)
++.|...
T Consensus 235 kI~lnde 241 (1388)
T PTZ00108 235 KVYLNGE 241 (1388)
T ss_pred EEEEeCc
Confidence 9999753
No 128
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=94.83 E-value=0.047 Score=59.02 Aligned_cols=53 Identities=30% Similarity=0.515 Sum_probs=42.3
Q ss_pred ccCHHHHHHHHHHccccCCCC------eEEEEE-EeCCeeeEEEEeCCCCCCHHhHHHHH
Q psy1955 24 IQRPANALKELLENSLDAKST------SIQVTV-KQGGLKLLQIQDNGTGIRKEDMDIVC 76 (512)
Q Consensus 24 i~~~~~~v~eLv~Ns~dA~a~------~i~i~~-~~~~~~~i~v~DnG~Gi~~~~~~~~~ 76 (512)
...|.-++.-|||||+.||-. .|.|.. +.++...+.|.|||+||+++....+-
T Consensus 348 l~~p~l~lqpLvENAi~hgi~~~~~~~~I~i~~~~~~~~i~i~i~Dng~g~~~~~~~~~~ 407 (456)
T COG2972 348 LIDPKLVLQPLVENAIEHGIEPKRPGGSIAISAKKQDDVIQISISDNGPGIDEEKLEGLS 407 (456)
T ss_pred ccCchHHHhHHHHHHHHHhcccCCCCCEEEEEEEEcCCEEEEEEeeCCCCCChhHHHHHH
Confidence 467888999999999999843 456666 34577889999999999988876555
No 129
>PLN03237 DNA topoisomerase 2; Provisional
Probab=94.21 E-value=0.4 Score=57.86 Aligned_cols=141 Identities=18% Similarity=0.232 Sum_probs=80.5
Q ss_pred EEEEEccCceeeEeecCCCCCCCcchhh---------hhhhccccCCccccccccccccccccchhhhhHhhhcc-eEEE
Q psy1955 316 IQVTVKQGGLKLLQIQDNGTGIRKEDMD---------IVCERFTTSKLTQFEDLNSISTFGFRGEALASISHVAH-LTII 385 (512)
Q Consensus 316 i~i~~~~~~~~~i~v~Dng~gi~~~~l~---------~~~~~~~TSKi~~~~dl~~~~t~GfRGeALaSi~~~s~-l~I~ 385 (512)
|.|++... ...|+|.|||.||+-+--. .++.-|+.||+++-. + --|-|-.|--....-.+|+ ++|.
T Consensus 102 I~V~I~~~-~gsIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFdd~~--y-KvSGGlhGVGasvvNaLS~~f~Ve 177 (1465)
T PLN03237 102 LRVVIDVE-QNLISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYDDNE--K-KTTGGRNGYGAKLTNIFSTEFVIE 177 (1465)
T ss_pred EEEEEEcC-CCEEEEEecCccccCCCCCCCCCccceEEEEeeeccccCCCCc--c-eeeccccccCccccccccCeeEEE
Confidence 45555421 1269999999999864211 134557888886421 1 1355666666655666774 8888
Q ss_pred EecCCCCCceEEEEec--Ccccccc-ccc-CCCCCceEEehhhcccchhhhccc-CCChH-HHHHHHHHHHHHh-hcCCC
Q psy1955 386 TKTKTSPCAYRASYID--SKLKDPI-KPC-AGNQGTQIIAEDLFYNIPTRRKAL-KQPSE-EYNKIADVVSRYA-VHNPH 458 (512)
Q Consensus 386 T~~~~~~~~~~~~~~~--~~~~~~~-~~~-~~~~GTtV~V~~lF~n~PvRrk~~-~~~~~-e~~~i~~~l~~ya-L~~p~ 458 (512)
++......-|+..|.+ |....+. ... ....||+|+- +|--..|= ..... .+..+.+.+...| ..+|.
T Consensus 178 v~Dg~~gk~y~Q~f~~nmG~~~~p~i~~~~~~~~GT~VtF------~PD~eiF~~~~fd~D~l~~~~rRlrdLAa~LnkG 251 (1465)
T PLN03237 178 TADGKRQKKYKQVFSNNMGKKSEPVITKCKKSENWTKVTF------KPDLAKFNMTHLEDDVVALMKKRVVDIAGCLGKT 251 (1465)
T ss_pred EEECCCCeEEEEEEeCCCCccCCceeccCCCCCCceEEEE------EECHHHhCCceEcHHHHHHHHHHHHHHHhccCCC
Confidence 8744333557777876 4433221 122 2368999986 34333331 11112 2233345566666 66789
Q ss_pred eEEEEEEC
Q psy1955 459 VGFTLKKQ 466 (512)
Q Consensus 459 v~f~l~~~ 466 (512)
|++.|...
T Consensus 252 lkI~Lnde 259 (1465)
T PLN03237 252 VKVELNGK 259 (1465)
T ss_pred cEEEEEec
Confidence 99999864
No 130
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=93.65 E-value=0.096 Score=51.03 Aligned_cols=47 Identities=28% Similarity=0.323 Sum_probs=35.6
Q ss_pred cCHHHHHHHHHHccccCCCC-----eEEEEEE--eCC-eeeEEEEeCCCCCCHHh
Q psy1955 25 QRPANALKELLENSLDAKST-----SIQVTVK--QGG-LKLLQIQDNGTGIRKED 71 (512)
Q Consensus 25 ~~~~~~v~eLv~Ns~dA~a~-----~i~i~~~--~~~-~~~i~v~DnG~Gi~~~~ 71 (512)
..+.-++.||+.||+.+|+. .|.|.+. .++ ...+.|+|||.|++.+.
T Consensus 121 ~~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~~~ 175 (221)
T COG3920 121 VPLGLIVHELVTNALKHAFLSRPGGEIRITLSREGDGGRFLLTVWDEGGGPPVEA 175 (221)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCCCCeEEEEEEECCCCCCCCC
Confidence 34667899999999998865 4566663 333 35799999999999653
No 131
>PLN03128 DNA topoisomerase 2; Provisional
Probab=93.58 E-value=0.61 Score=55.53 Aligned_cols=166 Identities=16% Similarity=0.190 Sum_probs=92.2
Q ss_pred hHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCceeeEeecCCCCCCCcchhh---------hhhhccccCCcccc
Q psy1955 287 TIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMD---------IVCERFTTSKLTQF 357 (512)
Q Consensus 287 ~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~---------~~~~~~~TSKi~~~ 357 (512)
-++..+.+.|.|+.+.....- +. .. |.|.+... ...++|.|||.||+-+--. .++.-|+.+|+++-
T Consensus 52 GL~ki~dEIldNAvDe~~~~g-~~-~~--I~V~i~~~-dgsIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGgkFdd~ 126 (1135)
T PLN03128 52 GLYKIFDEILVNAADNKQRDP-SM-DS--LKVDIDVE-QNTISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSSNFDDN 126 (1135)
T ss_pred hHHHHHHHHHHHHHHHhhhcC-CC-cE--EEEEEEcC-CCeEEEEecCccccCCCCCCCCCccceEEEEeeccccccCCc
Confidence 344455555555555431110 11 11 44555431 1269999999999864211 13445888888642
Q ss_pred ccccccccccccchhhhhHhhhcc-eEEEEecCCCCCceEEEEecCcccc---cccccC-CCCCceEEehhhcccchhhh
Q psy1955 358 EDLNSISTFGFRGEALASISHVAH-LTIITKTKTSPCAYRASYIDSKLKD---PIKPCA-GNQGTQIIAEDLFYNIPTRR 432 (512)
Q Consensus 358 ~dl~~~~t~GfRGeALaSi~~~s~-l~I~T~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~GTtV~V~~lF~n~PvRr 432 (512)
. .. -|=|-.|--....-.+|+ ++|.++...+..-|...|.+|.... ....+. ...||+|+- +|--.
T Consensus 127 ~--yk-vSGGlhGvGasvvNaLS~~f~Vev~d~r~gk~y~q~f~~G~~~~~~p~i~~~~~~~~GT~ItF------~PD~~ 197 (1135)
T PLN03128 127 E--KK-TTGGRNGYGAKLANIFSTEFTVETADGNRGKKYKQVFTNNMSVKSEPKITSCKASENWTKITF------KPDLA 197 (1135)
T ss_pred c--ce-eeccccCCCCeEEEeecCeEEEEEEECCCCeEEEEEeCCCcccCCCceeccCCCCCCceEEEE------EECHH
Confidence 1 11 245556666655566774 8888885545456778887774321 112222 358999986 33322
Q ss_pred cc-cCCCh-HHHHHHHHHHHHHh-hcCCCeEEEEEEC
Q psy1955 433 KA-LKQPS-EEYNKIADVVSRYA-VHNPHVGFTLKKQ 466 (512)
Q Consensus 433 k~-~~~~~-~e~~~i~~~l~~ya-L~~p~v~f~l~~~ 466 (512)
.| ..... ..+..+.+.+...| ..+|.|++.|...
T Consensus 198 iF~~~~fd~d~~~~l~kRl~elAa~Ln~GlkI~Lnde 234 (1135)
T PLN03128 198 KFNMTRLDEDVVALMSKRVYDIAGCLGKKLKVELNGK 234 (1135)
T ss_pred HcCCCccChHHHHHHHHHHHHHHHhCCCCcEEEEecC
Confidence 22 11112 22344666666666 6679999999754
No 132
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=93.01 E-value=0.14 Score=56.19 Aligned_cols=44 Identities=23% Similarity=0.370 Sum_probs=34.8
Q ss_pred HHHHHHHHHHccccCC-CCeEEEEEEe--CCeeeEEEEeCCCCCCHH
Q psy1955 27 PANALKELLENSLDAK-STSIQVTVKQ--GGLKLLQIQDNGTGIRKE 70 (512)
Q Consensus 27 ~~~~v~eLv~Ns~dA~-a~~i~i~~~~--~~~~~i~v~DnG~Gi~~~ 70 (512)
+.+++.||+.||+.+. +..|.|.+.. ++...+.|.|||+||+++
T Consensus 472 l~qv~~nll~NA~k~~~~~~i~i~~~~~~~~~~~i~V~D~G~Gi~~~ 518 (565)
T PRK10935 472 LLQIIREATLNAIKHANASEIAVSCVTNPDGEHTVSIRDDGIGIGEL 518 (565)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEEEcCCCEEEEEEEECCcCcCCC
Confidence 5678999999999954 4567777743 456679999999999963
No 133
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=92.51 E-value=0.18 Score=51.84 Aligned_cols=71 Identities=24% Similarity=0.397 Sum_probs=53.2
Q ss_pred cCHHHHHHHHHHcccc-CCCCeEEEEEEeCCe-eeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCCcchh
Q psy1955 25 QRPANALKELLENSLD-AKSTSIQVTVKQGGL-KLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFRGEA 102 (512)
Q Consensus 25 ~~~~~~v~eLv~Ns~d-A~a~~i~i~~~~~~~-~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~rGea 102 (512)
-++.-++.|++.|=.. |.|+.|.|.+..++. ..++|.|||.|+++.. + +..+|.+|+-
T Consensus 409 vTLyRl~QE~LNNI~KHA~AS~V~i~l~~~~e~l~Lei~DdG~Gl~~~~-----------~---------v~G~Gl~Gmr 468 (497)
T COG3851 409 VTLYRLCQELLNNICKHADASAVTIQLWQQDERLMLEIEDDGSGLPPGS-----------G---------VQGFGLTGMR 468 (497)
T ss_pred EeHHHHHHHHHHHHHhccccceEEEEEeeCCcEEEEEEecCCcCCCCCC-----------C---------ccCcCcchHH
Confidence 4678899999999776 899999999965544 7899999999999542 2 2456777754
Q ss_pred hhhhhccc-eEEEEE
Q psy1955 103 LASISHVA-HLTIIT 116 (512)
Q Consensus 103 L~si~~~s-~l~i~S 116 (512)
= ..++++ +++++|
T Consensus 469 E-RVsaLGG~ltlss 482 (497)
T COG3851 469 E-RVSALGGTLTLSS 482 (497)
T ss_pred H-HHHHhCCceEEEe
Confidence 2 345555 688888
No 134
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=92.47 E-value=0.34 Score=52.90 Aligned_cols=102 Identities=21% Similarity=0.244 Sum_probs=61.9
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEEEeeCCCceEEEeecCCCcceeecchhhHHHHHHHHHHHHhcCCCCcceeecceeeEE
Q psy1955 238 IKRMIEQVYSIYLPKGSFPFVYLSLCMDPKNVDVNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQ 317 (512)
Q Consensus 238 i~k~I~~~Y~~~l~~~~~P~~~L~i~ipp~~iDVNvhP~K~eV~f~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~ 317 (512)
+..+|..+-.-..++-+.--.-+.+..|+..+=|- -++-.+-+.+-++|.|+|++...... .-|+
T Consensus 458 l~~ai~~Al~ll~~R~~~~~~~l~~~~~~~~~~V~----------~~~iRLeQVLvNLl~NALDA~~~~~~-----~~i~ 522 (603)
T COG4191 458 LREAIEGALELLRGRLRAAGVELELDLPDAPLWVM----------ANEIRLEQVLVNLLQNALDAMAGQED-----RRLS 522 (603)
T ss_pred HHHHHHHHHHHHHHhhhccCceeeccCCCCCceee----------cchhhHHHHHHHHHHHHHHHhcCCCC-----CeeE
Confidence 56666665444432221111234455543333332 33444556678888888887543211 1145
Q ss_pred EEEccCc-eeeEeecCCCCCCCcchhhhhhhccccCCc
Q psy1955 318 VTVKQGG-LKLLQIQDNGTGIRKEDMDIVCERFTTSKL 354 (512)
Q Consensus 318 i~~~~~~-~~~i~v~Dng~gi~~~~l~~~~~~~~TSKi 354 (512)
|.....+ .-.++|.|||+||.++-+..++.++.|+|=
T Consensus 523 i~~~~~~~~v~l~VrDnGpGi~~e~~~~lFePF~TtK~ 560 (603)
T COG4191 523 IRAQREGGQVVLTVRDNGPGIAPEALPHLFEPFFTTKP 560 (603)
T ss_pred EEEEecCCeEEEEEccCCCCCCHHHHHhhcCCccccCc
Confidence 5555433 336899999999999999999999999993
No 135
>PRK13559 hypothetical protein; Provisional
Probab=92.26 E-value=0.18 Score=52.05 Aligned_cols=45 Identities=18% Similarity=0.193 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHccccCCC-----CeEEEEE--E-eCCeeeEEEEeCCCCCCHH
Q psy1955 26 RPANALKELLENSLDAKS-----TSIQVTV--K-QGGLKLLQIQDNGTGIRKE 70 (512)
Q Consensus 26 ~~~~~v~eLv~Ns~dA~a-----~~i~i~~--~-~~~~~~i~v~DnG~Gi~~~ 70 (512)
.+..++.||+.||+++|+ ..|.|.+ . .++...+.|.|||.|++++
T Consensus 267 ~l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~~ 319 (361)
T PRK13559 267 PLGLVLHELAVNAIKHGALSADQGRISISWKPSPEGAGFRIDWQEQGGPTPPK 319 (361)
T ss_pred HHHHHHHHHHHhHHHhccccCCCcEEEEEEEecCCCCeEEEEEECCCCCCCCC
Confidence 367899999999999964 3677777 2 3556679999999997754
No 136
>PRK10364 sensor protein ZraS; Provisional
Probab=92.10 E-value=0.43 Score=51.14 Aligned_cols=64 Identities=19% Similarity=0.359 Sum_probs=46.7
Q ss_pred cchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCc-eeeEeecCCCCCCCcchhhhhhhccccCC
Q psy1955 283 LHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGG-LKLLQIQDNGTGIRKEDMDIVCERFTTSK 353 (512)
Q Consensus 283 ~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~-~~~i~v~Dng~gi~~~~l~~~~~~~~TSK 353 (512)
.+...+...+.+++.|++........ |.|.....+ .-.+.|.|||+||+++++.+++.++.++|
T Consensus 344 ~d~~~l~~il~NLl~NA~k~~~~~~~-------I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~k 408 (457)
T PRK10364 344 ADPDRLTQVLLNLYLNAIQAIGQHGV-------ISVTASESGAGVKISVTDSGKGIAADQLEAIFTPYFTTK 408 (457)
T ss_pred ECHHHHHHHHHHHHHHHHHhcCCCCe-------EEEEEEEeCCeEEEEEEECCCCCCHHHHHHHhCccccCC
Confidence 45667888899999999987432211 334443322 23689999999999999999999988776
No 137
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=91.57 E-value=0.45 Score=51.50 Aligned_cols=80 Identities=20% Similarity=0.349 Sum_probs=59.6
Q ss_pred hhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCcee-eEeecCCCCCCCcchhhhhhhccccCCcccccccccc
Q psy1955 285 EDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGGLK-LLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSI 363 (512)
Q Consensus 285 ~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~~~-~i~v~Dng~gi~~~~l~~~~~~~~TSKi~~~~dl~~~ 363 (512)
..+++..+.+++.|+|++..+ ..+...|.+.+...|.. -+.|.|+||||+++....+..+..++|-+
T Consensus 425 ~~~litIlGNLidNA~eA~~~----~~~~k~I~l~i~~~~~~lvieV~D~G~GI~~~~~~~iFe~G~Stk~~-------- 492 (537)
T COG3290 425 PHDLVTILGNLIDNALEALLA----PEENKEIELSLSDRGDELVIEVADTGPGIPPEVRDKIFEKGVSTKNT-------- 492 (537)
T ss_pred hHHHHHHHHHHHHHHHHHhhc----cCCCcEEEEEEEecCCEEEEEEeCCCCCCChHHHHHHHhcCccccCC--------
Confidence 467888899999999988653 11222255666665544 67999999999999999999998888742
Q ss_pred ccccccchhhhhHhhh
Q psy1955 364 STFGFRGEALASISHV 379 (512)
Q Consensus 364 ~t~GfRGeALaSi~~~ 379 (512)
|-||--|+-+.+.
T Consensus 493 ---~~rGiGL~Lvkq~ 505 (537)
T COG3290 493 ---GGRGIGLYLVKQL 505 (537)
T ss_pred ---CCCchhHHHHHHH
Confidence 5677777766654
No 138
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=91.33 E-value=0.5 Score=50.28 Aligned_cols=86 Identities=19% Similarity=0.198 Sum_probs=57.5
Q ss_pred ceEEEeecCCCcce-eecchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccC-ceeeEeecCCCCCCCcchhhh
Q psy1955 267 KNVDVNVHPTKHEV-HFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQG-GLKLLQIQDNGTGIRKEDMDI 344 (512)
Q Consensus 267 ~~iDVNvhP~K~eV-~f~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~-~~~~i~v~Dng~gi~~~~l~~ 344 (512)
..+.++++|+..-. ...+...+...+.+++.|++......... ...|.|..... +.-.+.|.|||.||+++...+
T Consensus 366 ~~i~~~~~~~~~~~~v~~d~~~l~~vl~Nl~~NAik~~~~~~~~---~~~i~i~~~~~~~~~~~~V~D~G~Gi~~~~~~~ 442 (494)
T TIGR02938 366 AGIVVDWQPAATLPAILGRELQLRSLFKALVDNAIEAMNIKGWK---RRELSITTALNGDLIVVSILDSGPGIPQDLRYK 442 (494)
T ss_pred CCCEEEEecCCCCCeeecCHHHHHHHHHHHHHHHHHHhhccCCC---cceEEEEEEecCCEEEEEEEeCCCCCCHHHHHH
Confidence 45667776665432 23567778888999999999875332100 01133433322 233689999999999999999
Q ss_pred hhhccccCCcc
Q psy1955 345 VCERFTTSKLT 355 (512)
Q Consensus 345 ~~~~~~TSKi~ 355 (512)
++.++.|+|-.
T Consensus 443 iF~~f~~~~~~ 453 (494)
T TIGR02938 443 VFEPFFTTKGG 453 (494)
T ss_pred hcCCCcccCCC
Confidence 99999888754
No 139
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=91.22 E-value=0.66 Score=49.33 Aligned_cols=65 Identities=22% Similarity=0.311 Sum_probs=46.9
Q ss_pred ecchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccC-ceeeEeecCCCCCCCcchhhhhhhccccCC
Q psy1955 282 FLHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQG-GLKLLQIQDNGTGIRKEDMDIVCERFTTSK 353 (512)
Q Consensus 282 f~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~-~~~~i~v~Dng~gi~~~~l~~~~~~~~TSK 353 (512)
..+...+...+.+++.|++........ |.|..... +.-.+.|.|||+||+++++.+++.++.+.+
T Consensus 312 ~~d~~~l~~vl~NLl~NAik~~~~~~~-------I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~ 377 (430)
T PRK11006 312 FGNEDQLRSAISNLVYNAVNHTPEGTH-------ITVRWQRVPQGAEFSVEDNGPGIAPEHIPRLTERFYRVD 377 (430)
T ss_pred EECHHHHHHHHHHHHHHHHhcCCCCCe-------EEEEEEEcCCEEEEEEEEcCCCCCHHHHHHhccCccccc
Confidence 356778888899999999987543211 33333322 223689999999999999999999887654
No 140
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=90.70 E-value=1.3 Score=47.20 Aligned_cols=86 Identities=20% Similarity=0.302 Sum_probs=55.5
Q ss_pred cchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccC-ceeeEeecCCCCCCCcchhhhhhhccccCCcccccccc
Q psy1955 283 LHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQG-GLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLN 361 (512)
Q Consensus 283 ~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~-~~~~i~v~Dng~gi~~~~l~~~~~~~~TSKi~~~~dl~ 361 (512)
.+...+...+.++|.|++....... . |.|..... +.-.+.|.|||.||+++++..+..++++.+-..-
T Consensus 348 ~d~~~l~qvl~nll~NAi~~~~~~~-----~--I~i~~~~~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~~~---- 416 (466)
T PRK10549 348 GDPDRLMQLFNNLLENSLRYTDSGG-----S--LHISAEQRDKTLRLTFADSAPGVSDEQLQKLFERFYRTEGSRN---- 416 (466)
T ss_pred eCHHHHHHHHHHHHHHHHHhCCCCC-----E--EEEEEEEcCCEEEEEEEecCCCcCHHHHHHhccCcccCCCCcC----
Confidence 5677788889999999988754321 1 33333322 2236789999999999999999999876653210
Q ss_pred ccccccccchhhhhHhhhcc
Q psy1955 362 SISTFGFRGEALASISHVAH 381 (512)
Q Consensus 362 ~~~t~GfRGeALaSi~~~s~ 381 (512)
...|-.|--|+-...+.+
T Consensus 417 --~~~~g~GlGL~iv~~i~~ 434 (466)
T PRK10549 417 --RASGGSGLGLAICLNIVE 434 (466)
T ss_pred --CCCCCCcHHHHHHHHHHH
Confidence 122334666655444443
No 141
>PRK09303 adaptive-response sensory kinase; Validated
Probab=90.41 E-value=0.86 Score=47.85 Aligned_cols=64 Identities=16% Similarity=0.256 Sum_probs=46.4
Q ss_pred cchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEE--ccCceeeEeecCCCCCCCcchhhhhhhccccCC
Q psy1955 283 LHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTV--KQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSK 353 (512)
Q Consensus 283 ~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~--~~~~~~~i~v~Dng~gi~~~~l~~~~~~~~TSK 353 (512)
.+...+...+.+.|.|++........ |.|.. ...+.-.+.|.|||.||+++++.+++.++.+.+
T Consensus 268 ~d~~~l~qvl~NLl~NAik~~~~~~~-------I~i~~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~pf~~~~ 333 (380)
T PRK09303 268 ADQERIRQVLLNLLDNAIKYTPEGGT-------ITLSMLHRTTQKVQVSICDTGPGIPEEEQERIFEDRVRLP 333 (380)
T ss_pred eCHHHHHHHHHHHHHHHHhcCCCCce-------EEEEEEecCCCEEEEEEEEcCCCCCHHHHHHHccCceeCC
Confidence 56777888899999999976543211 33333 223334688999999999999999999887665
No 142
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=90.28 E-value=1.6 Score=51.15 Aligned_cols=101 Identities=18% Similarity=0.180 Sum_probs=64.1
Q ss_pred EEeecCCCcceeecchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccC-ceeeEeecCCCCCCCcchhhhhhhc
Q psy1955 270 DVNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQG-GLKLLQIQDNGTGIRKEDMDIVCER 348 (512)
Q Consensus 270 DVNvhP~K~eV~f~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~-~~~~i~v~Dng~gi~~~~l~~~~~~ 348 (512)
++++.|+-......+...+...+.++|.|++....... |.|..... +.-.+.|.|||+||+++++.+++.+
T Consensus 496 ~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~g~--------I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~ 567 (921)
T PRK15347 496 RTFVGAHVPLYLHLDSLRLRQILVNLLGNAVKFTETGG--------IRLRVKRHEQQLCFTVEDTGCGIDIQQQQQIFTP 567 (921)
T ss_pred EEEECCCCCceEEECHHHHHHHHHHHHHHHhhcCCCCC--------EEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhcC
Confidence 34445544333445777888889999999997654322 33333322 2336899999999999999999999
Q ss_pred cccCCccccccccccccccccchhhhhHhhhc-----ceEEEEec
Q psy1955 349 FTTSKLTQFEDLNSISTFGFRGEALASISHVA-----HLTIITKT 388 (512)
Q Consensus 349 ~~TSKi~~~~dl~~~~t~GfRGeALaSi~~~s-----~l~I~T~~ 388 (512)
+.+.+-. .|-.|-.|+-...+. .+++.|..
T Consensus 568 f~~~~~~----------~~g~GLGL~i~~~~~~~~gG~i~i~s~~ 602 (921)
T PRK15347 568 FYQADTH----------SQGTGLGLTIASSLAKMMGGELTLFSTP 602 (921)
T ss_pred cccCCCC----------CCCCchHHHHHHHHHHHcCCEEEEEecC
Confidence 8776522 133455554443333 47776654
No 143
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=90.05 E-value=1.9 Score=45.81 Aligned_cols=65 Identities=17% Similarity=0.208 Sum_probs=45.4
Q ss_pred cchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccC-ceeeEeecCCCCCCCcchhhhhhhccccCCc
Q psy1955 283 LHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQG-GLKLLQIQDNGTGIRKEDMDIVCERFTTSKL 354 (512)
Q Consensus 283 ~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~-~~~~i~v~Dng~gi~~~~l~~~~~~~~TSKi 354 (512)
.+...+...+.+.+.|++........ |.|..... +.-.+.|.|||.|++++++..+..++.+.+.
T Consensus 364 ~~~~~l~~vl~nli~Na~~~~~~~~~-------i~i~~~~~~~~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~ 429 (475)
T PRK11100 364 GDPFLLRQALGNLLDNAIDFSPEGGT-------ITLSAEVDGEQVALSVEDQGPGIPDYALPRIFERFYSLPR 429 (475)
T ss_pred ECHHHHHHHHHHHHHHHHHhCCCCCE-------EEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHHHHccCCC
Confidence 34556777888899998876432211 34444422 3346899999999999999999998876643
No 144
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=89.12 E-value=3.2 Score=42.70 Aligned_cols=62 Identities=18% Similarity=0.274 Sum_probs=42.9
Q ss_pred cchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccC-ceeeEeecCCCCCCCcchhhhhhhcccc
Q psy1955 283 LHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQG-GLKLLQIQDNGTGIRKEDMDIVCERFTT 351 (512)
Q Consensus 283 ~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~-~~~~i~v~Dng~gi~~~~l~~~~~~~~T 351 (512)
.+...+...+.+.+.|++..+..... |.|..... +.-.+.|.|||+||+++++.++..++.+
T Consensus 243 ~d~~~l~~il~nLi~NA~k~~~~~~~-------I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~ 305 (356)
T PRK10755 243 GDATLLRLLLRNLVENAHRYSPEGST-------ITIKLSQEDGGAVLAVEDEGPGIDESKCGELSKAFVR 305 (356)
T ss_pred ECHHHHHHHHHHHHHHHHhhCCCCCc-------EEEEEEEcCCEEEEEEEECCCCCCHHHHHHhCCCeEe
Confidence 45666667888999999876532211 33333322 2236899999999999999999888663
No 145
>PRK10604 sensor protein RstB; Provisional
Probab=89.07 E-value=2.3 Score=45.35 Aligned_cols=61 Identities=23% Similarity=0.375 Sum_probs=44.2
Q ss_pred cchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCc-eeeEeecCCCCCCCcchhhhhhhccccC
Q psy1955 283 LHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGG-LKLLQIQDNGTGIRKEDMDIVCERFTTS 352 (512)
Q Consensus 283 ~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~-~~~i~v~Dng~gi~~~~l~~~~~~~~TS 352 (512)
.+...+...+.+.+.|++..+... |.|.....+ .-.+.|.|||.||+++++.++..++++.
T Consensus 315 ~d~~~l~~vl~NLl~NAik~~~~~---------I~I~~~~~~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~ 376 (433)
T PRK10604 315 LDMRLMERVLDNLLNNALRYAHSR---------VRVSLLLDGNQACLIVEDDGPGIPPEERERVFEPFVRL 376 (433)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCe---------EEEEEEEECCEEEEEEEEcCCCCCHHHHhhcCCCCccC
Confidence 466677788999999998765321 333333222 2368999999999999999999987754
No 146
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=88.95 E-value=1.4 Score=46.70 Aligned_cols=84 Identities=15% Similarity=0.244 Sum_probs=54.4
Q ss_pred chhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCcee-eEeecCCCCCCCcchhhhhhhccccCCccccccccc
Q psy1955 284 HEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGGLK-LLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNS 362 (512)
Q Consensus 284 ~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~~~-~i~v~Dng~gi~~~~l~~~~~~~~TSKi~~~~dl~~ 362 (512)
+...+...+.+++.|++..+..... |.|.....+.. .+.|.|||+|++++.+.....++.+++-....
T Consensus 350 ~~~~l~~~~~nll~Nai~~~~~~~~-------I~i~~~~~~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~~~~---- 418 (457)
T TIGR01386 350 DPQMFRRAISNLLSNALRHTPDGGT-------ITVRIERRSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDPARSN---- 418 (457)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCce-------EEEEEEecCCEEEEEEEeCCCCCCHHHHHHhccccccCCcccCC----
Confidence 3455667788999998876533211 44545444333 68999999999999999999998877654311
Q ss_pred cccccccchhhhhHhhhc
Q psy1955 363 ISTFGFRGEALASISHVA 380 (512)
Q Consensus 363 ~~t~GfRGeALaSi~~~s 380 (512)
..+-+|--|+-+..+.
T Consensus 419 --~~~g~GlGL~i~~~~~ 434 (457)
T TIGR01386 419 --SGEGTGLGLAIVRSIM 434 (457)
T ss_pred --CCCCccccHHHHHHHH
Confidence 1123555565555444
No 147
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=88.82 E-value=1.7 Score=47.49 Aligned_cols=66 Identities=20% Similarity=0.279 Sum_probs=44.7
Q ss_pred cchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCceeeEeecCCCCCCCcchhhhhhhccccCC
Q psy1955 283 LHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSK 353 (512)
Q Consensus 283 ~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~~~~~~~TSK 353 (512)
.+...+...+.+++.+++...... ..+.|.+.....+.-.+.|.|||+||+++.+..+..++.++|
T Consensus 496 ~~~~~l~~~~~nli~na~~~~~~~-----~~i~v~~~~~~~~~~~i~v~D~G~G~~~~~~~~~f~~~~~~~ 561 (607)
T PRK11360 496 ADPELLKQVLLNILINAVQAISAR-----GKIRIRTWQYSDGQVAVSIEDNGCGIDPELLKKIFDPFFTTK 561 (607)
T ss_pred ECHHHHHHHHHHHHHHHHHHhcCC-----CeEEEEEEEcCCCEEEEEEEeCCCCCCHHHHhhhcCCceeCC
Confidence 355667788888888888764321 112233333333224689999999999999999988877665
No 148
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=88.81 E-value=0.5 Score=50.34 Aligned_cols=45 Identities=22% Similarity=0.412 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHccccCCCC------eEEEEEE-eCCeeeEEEEeCCCCCCHH
Q psy1955 26 RPANALKELLENSLDAKST------SIQVTVK-QGGLKLLQIQDNGTGIRKE 70 (512)
Q Consensus 26 ~~~~~v~eLv~Ns~dA~a~------~i~i~~~-~~~~~~i~v~DnG~Gi~~~ 70 (512)
=|.=.+.=|||||+.+|-+ .+.|.+. .+....|.|+|||.|++++
T Consensus 456 iP~filQPLVENAIKHG~~~~~~~g~V~I~V~~~d~~l~i~VeDng~li~p~ 507 (557)
T COG3275 456 IPSFILQPLVENAIKHGISQLKDTGRVTISVEKEDADLRIEVEDNGGLIQPD 507 (557)
T ss_pred CchhhhhHHHHHHHHhcccchhcCCceEEEEEEeCCeEEEEEecCCCCcCCC
Confidence 3445688899999998743 4566662 3445679999999999996
No 149
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=88.66 E-value=1.1 Score=50.80 Aligned_cols=64 Identities=16% Similarity=0.319 Sum_probs=45.2
Q ss_pred cchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccC-ceeeEeecCCCCCCCcch-hhhhhhccccCC
Q psy1955 283 LHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQG-GLKLLQIQDNGTGIRKED-MDIVCERFTTSK 353 (512)
Q Consensus 283 ~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~-~~~~i~v~Dng~gi~~~~-l~~~~~~~~TSK 353 (512)
-+...+...+.+.+.|+++....... |.|..... +.-.+.|.|||+||+++. ..++..++.++|
T Consensus 575 ~d~~~l~~vl~nLl~NAik~~~~~~~-------I~I~~~~~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~ 640 (679)
T TIGR02916 575 ADRERLERVLGHLVQNALEATPGEGR-------VAIRVERECGAARIEIEDSGCGMSPAFIRERLFKPFDTTK 640 (679)
T ss_pred ECHHHHHHHHHHHHHHHHHhCCCCCc-------EEEEEEEcCCEEEEEEEEcCCCcChHHHHHhcCCCCCCCC
Confidence 45667778889999999987543211 34444432 333689999999999998 788887776665
No 150
>PRK10815 sensor protein PhoQ; Provisional
Probab=87.90 E-value=1.4 Score=47.87 Aligned_cols=60 Identities=13% Similarity=0.273 Sum_probs=43.1
Q ss_pred cchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccC-ceeeEeecCCCCCCCcchhhhhhhcccc
Q psy1955 283 LHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQG-GLKLLQIQDNGTGIRKEDMDIVCERFTT 351 (512)
Q Consensus 283 ~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~-~~~~i~v~Dng~gi~~~~l~~~~~~~~T 351 (512)
.+...+...+.+++.|++...... ++|..... +.-.+.|.|+|.||+++++.+++.++.+
T Consensus 374 ~d~~~l~~vl~NLi~NAik~~~~~---------i~I~~~~~~~~v~I~V~D~G~GI~~e~~~~iF~~f~~ 434 (485)
T PRK10815 374 GEKNDFMEVMGNVLDNACKYCLEF---------VEISARQTDEHLHIVVEDDGPGIPESKRELIFDRGQR 434 (485)
T ss_pred eCHHHHHHHHHHHHHHHHHhcCCc---------EEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhCCccc
Confidence 556677788999999998765432 33433322 2236889999999999999999887654
No 151
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=87.80 E-value=3.4 Score=48.64 Aligned_cols=104 Identities=15% Similarity=0.241 Sum_probs=65.9
Q ss_pred EeecCCCcceeecchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCceeeEeecCCCCCCCcchhhhhhhccc
Q psy1955 271 VNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFT 350 (512)
Q Consensus 271 VNvhP~K~eV~f~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~~~~~~~ 350 (512)
+++.|+...+...+...+...+.++|.|++..+.... +.|.|.......-.+.|.|+|+||+++++..++.++.
T Consensus 563 ~~~~~~~~~~~~~d~~~l~~il~nLi~NAik~~~~g~------i~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~ 636 (968)
T TIGR02956 563 LNIPEQLPNWWQGDGPRIRQVLINLVGNAIKFTDRGS------VVLRVSLNDDSSLLFEVEDTGCGIAEEEQATLFDAFT 636 (968)
T ss_pred EEeCCCCCceEeeCHHHHHHHHHHHHHHHHhhCCCCe------EEEEEEEcCCCeEEEEEEeCCCCCCHHHHHHHHhhhh
Confidence 3444444445557888888999999999997754321 1233433333324589999999999999999999988
Q ss_pred cCCccccccccccccccccchhhhhHhhhc-----ceEEEEec
Q psy1955 351 TSKLTQFEDLNSISTFGFRGEALASISHVA-----HLTIITKT 388 (512)
Q Consensus 351 TSKi~~~~dl~~~~t~GfRGeALaSi~~~s-----~l~I~T~~ 388 (512)
+.+ .. ...|-.|--|+-...+. ++.+.|..
T Consensus 637 ~~~-~~-------~~~~g~GLGL~i~~~l~~~~gG~i~~~s~~ 671 (968)
T TIGR02956 637 QAD-GR-------RRSGGTGLGLAISQRLVEAMDGELGVESEL 671 (968)
T ss_pred ccC-CC-------CCCCCccHHHHHHHHHHHHcCCEEEEEecC
Confidence 766 21 22344555555333332 46666543
No 152
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=87.37 E-value=1.8 Score=45.99 Aligned_cols=61 Identities=16% Similarity=0.315 Sum_probs=43.5
Q ss_pred cchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccC-ceeeEeecCCCCCCCcchhhhhhhccccC
Q psy1955 283 LHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQG-GLKLLQIQDNGTGIRKEDMDIVCERFTTS 352 (512)
Q Consensus 283 ~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~-~~~~i~v~Dng~gi~~~~l~~~~~~~~TS 352 (512)
.+...+...+.+.+.|++..+... |.|..... +.-.+.|.|||+||+++++..+..++.+.
T Consensus 349 ~~~~~l~~~l~nli~NA~~~~~~~---------i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~ 410 (461)
T PRK09470 349 GNPNALASALENIVRNALRYSHTK---------IEVAFSVDKDGLTITVDDDGPGVPEEEREQIFRPFYRV 410 (461)
T ss_pred ECHHHHHHHHHHHHHHHHHhCCCc---------EEEEEEEECCEEEEEEEECCCCCCHHHHHHhcCCCccC
Confidence 456667788999999999765321 33333322 22368999999999999999998886653
No 153
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=87.14 E-value=2.4 Score=48.77 Aligned_cols=96 Identities=13% Similarity=0.242 Sum_probs=60.5
Q ss_pred ecchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCceeeEeecCCCCCCCcchhhhhhhccccCCcccccccc
Q psy1955 282 FLHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLN 361 (512)
Q Consensus 282 f~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~~~~~~~TSKi~~~~dl~ 361 (512)
.-+...+...+.+.+.|++....... +.|.+.....+.-.+.|.|+|.||+++++.+++.++.+.|-.+-
T Consensus 393 ~~d~~~l~qvl~NLl~NAik~~~~g~------v~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~---- 462 (779)
T PRK11091 393 ITDGTRLRQILWNLISNAVKFTQQGG------VTVRVRYEEGDMLTFEVEDSGIGIPEDELDKIFAMYYQVKDSHG---- 462 (779)
T ss_pred EeCHHHHHHHHHHHHHHHHHhCCCCc------EEEEEEEccCCEEEEEEEecCCCCCHHHHHHHHHHhhcccCCCC----
Confidence 35667788888888999887653222 12333333233346899999999999999999999888763211
Q ss_pred ccccccccchhhhhHhhh-----cceEEEEec
Q psy1955 362 SISTFGFRGEALASISHV-----AHLTIITKT 388 (512)
Q Consensus 362 ~~~t~GfRGeALaSi~~~-----s~l~I~T~~ 388 (512)
-...|-.|--|+-...+ +++.+.|..
T Consensus 463 -~~~~~GtGLGL~i~~~iv~~~gG~i~v~s~~ 493 (779)
T PRK11091 463 -GKPATGTGIGLAVSKRLAQAMGGDITVTSEE 493 (779)
T ss_pred -CCCCCCcchHHHHHHHHHHHcCCEEEEEecC
Confidence 01233345555544433 357776654
No 154
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=86.92 E-value=1.9 Score=50.60 Aligned_cols=78 Identities=13% Similarity=0.254 Sum_probs=53.6
Q ss_pred EeecCCCcceeecchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccC--ceeeEeecCCCCCCCcchhhhhhhc
Q psy1955 271 VNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQG--GLKLLQIQDNGTGIRKEDMDIVCER 348 (512)
Q Consensus 271 VNvhP~K~eV~f~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~--~~~~i~v~Dng~gi~~~~l~~~~~~ 348 (512)
+.+.|+......-+...+...+.+++.|++....... +.|.+..... +.-.+.|.|+|+||+++++.+++.+
T Consensus 549 ~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~G~------I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l~~IFeP 622 (894)
T PRK10618 549 IHNHLKAEQLRIGDRDALRKILLLLLNYAITTTAYGK------ITLEVDQDESSPDRLTIRILDTGAGVSIKELDNLHFP 622 (894)
T ss_pred EEeCCCCCcEEEecHHHHHHHHHHHHHHHHHhCCCCe------EEEEEEEccCCCcEEEEEEEECCCCCCHHHHHHhcCc
Confidence 3344444444557888888999999999997654322 1233333222 2346899999999999999999999
Q ss_pred cccCCc
Q psy1955 349 FTTSKL 354 (512)
Q Consensus 349 ~~TSKi 354 (512)
+.+.|-
T Consensus 623 F~t~~~ 628 (894)
T PRK10618 623 FLNQTQ 628 (894)
T ss_pred cccCCC
Confidence 887653
No 155
>KOG0019|consensus
Probab=86.84 E-value=1.2 Score=48.86 Aligned_cols=126 Identities=21% Similarity=0.261 Sum_probs=83.0
Q ss_pred EEEEEccCceeeEeecCCCCCCCcchhhhhhhccccCCcccccc-----ccccccccccchhhhhHhhhcc-eEEEEecC
Q psy1955 316 IQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFED-----LNSISTFGFRGEALASISHVAH-LTIITKTK 389 (512)
Q Consensus 316 i~i~~~~~~~~~i~v~Dng~gi~~~~l~~~~~~~~TSKi~~~~d-----l~~~~t~GfRGeALaSi~~~s~-l~I~T~~~ 389 (512)
|.|.+... ...+++.|.|.||..+||+..-..-|.|=-..|.+ -...+-.|.-|-..+|---++. |+|+||+.
T Consensus 93 I~i~~nk~-~~tlti~DtGIGMTk~dLvnnLGTIAkSGtK~Fmealkea~ad~~~IGQFGvGFYSaylVAdkV~V~tk~~ 171 (656)
T KOG0019|consen 93 IRIITNKD-KRTITIQDTGIGMTKEDLVNNLGTIAKSGSKAFLEALKEAEAESNLIGQFGVGFYSAFMVADRVVVTTRHP 171 (656)
T ss_pred EEeccCCC-cceEEEEecCCCcCHHHHHhhhhhhhhcccHHHHHHHHhcccchhhhhhcccchhhhhhhhheeEEeeccC
Confidence 44554432 23578899999999999998655544443334432 2235678888889999888995 99999998
Q ss_pred CCCCceEEEEecCcccccccccCCCCCceEEehhhcccchhhhcccCC---ChHHHHHHHHHHHHHhhc
Q psy1955 390 TSPCAYRASYIDSKLKDPIKPCAGNQGTQIIAEDLFYNIPTRRKALKQ---PSEEYNKIADVVSRYAVH 455 (512)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~GTtV~V~~lF~n~PvRrk~~~~---~~~e~~~i~~~l~~yaL~ 455 (512)
++. +|.|....++.-....-....+||.|.. +++. .-.+-.+|++++..|+.-
T Consensus 172 ~~e-~y~Wes~~~gs~~v~~~~~~~rGTki~l------------~lKe~~~ey~ee~rikeiVKK~S~F 227 (656)
T KOG0019|consen 172 ADE-GLQWTSNGRGSYEIAEASGLRTGTKIVI------------HLKEGDCEFLEEKRIKEVVKKYSNF 227 (656)
T ss_pred CCc-ceeeecCCCCceEEeeccCccccceEEe------------eehhhhhhhccHhHHHHHHhhcccc
Confidence 765 7777666543221111123778999887 3332 223556788999988763
No 156
>PRK10337 sensor protein QseC; Provisional
Probab=86.76 E-value=1.7 Score=46.19 Aligned_cols=61 Identities=23% Similarity=0.350 Sum_probs=44.9
Q ss_pred ecchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCceeeEeecCCCCCCCcchhhhhhhccccC
Q psy1955 282 FLHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTS 352 (512)
Q Consensus 282 f~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~~~~~~~TS 352 (512)
..+...+...+.+.+.|++..+..... |.|.... ..+.|.|||.||+++++.++..++.+.
T Consensus 347 ~~~~~~l~~vl~Nli~NA~k~~~~~~~-------i~i~~~~---~~i~i~D~G~Gi~~~~~~~if~~f~~~ 407 (449)
T PRK10337 347 TGQPLLLSLLVRNLLDNAIRYSPQGSV-------VDVTLNA---RNFTVRDNGPGVTPEALARIGERFYRP 407 (449)
T ss_pred ecCHHHHHHHHHHHHHHHHhhCCCCCe-------EEEEEEe---eEEEEEECCCCCCHHHHHHhcccccCC
Confidence 356667778889999999987543221 4444432 268999999999999999999887754
No 157
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=86.66 E-value=2.7 Score=41.27 Aligned_cols=63 Identities=17% Similarity=0.385 Sum_probs=46.6
Q ss_pred hhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCc-eeeEeecCCCCCCCcchhhhhhhccccCCcc
Q psy1955 285 EDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGG-LKLLQIQDNGTGIRKEDMDIVCERFTTSKLT 355 (512)
Q Consensus 285 ~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~-~~~i~v~Dng~gi~~~~l~~~~~~~~TSKi~ 355 (512)
...+-..+.+.+.|++.+.. .. .|.|.....+ .-.++|.|||.||+++...+++.++.|+|-.
T Consensus 226 ~~~l~~vl~nLi~NAi~~~~-~~-------~i~i~~~~~~~~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~ 289 (336)
T COG0642 226 PERLRQVLVNLLSNAIKYTP-GG-------EITISVRQDDEQVTISVEDTGPGIPEEELERIFEPFFRTDKS 289 (336)
T ss_pred HHHHHHHHHHHHHHHhccCC-CC-------eEEEEEEecCCeEEEEEEcCCCCCCHHHHHHhccCeeccCCC
Confidence 55566689999999998875 11 1444444332 3468999999999999999999998888755
No 158
>PRK10490 sensor protein KdpD; Provisional
Probab=86.47 E-value=1.9 Score=50.78 Aligned_cols=64 Identities=16% Similarity=0.261 Sum_probs=46.2
Q ss_pred cchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccC-ceeeEeecCCCCCCCcchhhhhhhccccCC
Q psy1955 283 LHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQG-GLKLLQIQDNGTGIRKEDMDIVCERFTTSK 353 (512)
Q Consensus 283 ~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~-~~~~i~v~Dng~gi~~~~l~~~~~~~~TSK 353 (512)
-+...+...+.+.+.|++........ |.|..... +.-.+.|.|||+||+++++.+++.++.+.+
T Consensus 774 ~D~~~L~qVL~NLL~NAik~s~~g~~-------I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~ 838 (895)
T PRK10490 774 VDGPLFERVLINLLENAVKYAGAQAE-------IGIDAHVEGERLQLDVWDNGPGIPPGQEQLIFDKFARGN 838 (895)
T ss_pred ECHHHHHHHHHHHHHHHHHhCCCCCe-------EEEEEEEeCCEEEEEEEECCCCCCHHHHHHhcCCCccCC
Confidence 56777888899999999876533211 33333322 233689999999999999999999988755
No 159
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=86.41 E-value=0.81 Score=46.61 Aligned_cols=81 Identities=19% Similarity=0.304 Sum_probs=52.3
Q ss_pred cCHHHHHHHHHHccc-cCCCCeEEEEEE-eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCCcchh
Q psy1955 25 QRPANALKELLENSL-DAKSTSIQVTVK-QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFRGEA 102 (512)
Q Consensus 25 ~~~~~~v~eLv~Ns~-dA~a~~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~rGea 102 (512)
+.+.-++.|-+.|== .||||.|.|.++ .++...+.|.|||.|.+...... + ...+|.|-+-
T Consensus 358 talyRv~QEaltNIErHa~Atrv~ill~~~~d~vql~vrDnG~GF~~~~~~~--------------~---~~GiGLRNMr 420 (459)
T COG4564 358 TALYRVVQEALTNIERHAGATRVTILLQQMGDMVQLMVRDNGVGFSVKEALQ--------------K---RHGIGLRNMR 420 (459)
T ss_pred HHHHHHHHHHHHHHHhhcCCeEEEEEeccCCcceEEEEecCCCCccchhhcc--------------C---ccccccccHH
Confidence 445666777776643 389999999995 45567899999999999665421 1 0223443321
Q ss_pred hhhhhccc-eEEEEEecCCCCc
Q psy1955 103 LASISHVA-HLTIITKTKTSPC 123 (512)
Q Consensus 103 L~si~~~s-~l~i~S~~~~~~~ 123 (512)
-.+++.+ .++|.|.+++...
T Consensus 421 -ERma~~GG~~~v~s~p~GTel 441 (459)
T COG4564 421 -ERMAHFGGELEVESSPQGTEL 441 (459)
T ss_pred -HHHHHhCceEEEEecCCCcEE
Confidence 2344554 6899998875433
No 160
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=86.33 E-value=1.9 Score=49.37 Aligned_cols=64 Identities=13% Similarity=0.222 Sum_probs=46.2
Q ss_pred cchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccC-ceeeEeecCCCCCCCcchhhhhhhccccCC
Q psy1955 283 LHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQG-GLKLLQIQDNGTGIRKEDMDIVCERFTTSK 353 (512)
Q Consensus 283 ~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~-~~~~i~v~Dng~gi~~~~l~~~~~~~~TSK 353 (512)
-+...+...+.+.+.|++........ |.|..... +.-.+.|.|||.||+++++.+++.++.+.+
T Consensus 593 ~d~~~L~~il~NLI~NAik~s~~~~~-------I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFe~F~t~~ 657 (703)
T TIGR03785 593 GSPELIAQMLDKLVDNAREFSPEDGL-------IEVGLSQNKSHALLTVSNEGPPLPEDMGEQLFDSMVSVR 657 (703)
T ss_pred ECHHHHHHHHHHHHHHHHHHCCCCCe-------EEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhCCCeecC
Confidence 56677888899999999876533211 33433322 223689999999999999999999988765
No 161
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=86.27 E-value=1.7 Score=47.66 Aligned_cols=85 Identities=16% Similarity=0.232 Sum_probs=54.4
Q ss_pred chhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCc-eeeEeecCCCCCCCcchhhhhhhccccCCccccccccc
Q psy1955 284 HEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGG-LKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNS 362 (512)
Q Consensus 284 ~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~-~~~i~v~Dng~gi~~~~l~~~~~~~~TSKi~~~~dl~~ 362 (512)
+...+...+.+.+.|++........ ....|.|.....+ .-.+.|.|||+||++++..+++.+++++|-.
T Consensus 429 ~~~~l~~vl~nLl~NAi~~~~~~~~---~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk~~------- 498 (545)
T PRK15053 429 DSTEFAAIVGNLLDNAFEASLRSDE---GNKIVELFLSDEGDDVVIEVADQGCGVPESLRDKIFEQGVSTRAD------- 498 (545)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhCCC---CCceEEEEEEECCCEEEEEEEeCCCCcCHHHHHHHhCCCCCCCCC-------
Confidence 5677888888888888876311000 0001344444332 2368999999999999999999998887632
Q ss_pred cccccccchhhhhHhhhc
Q psy1955 363 ISTFGFRGEALASISHVA 380 (512)
Q Consensus 363 ~~t~GfRGeALaSi~~~s 380 (512)
..|-+|--|+-...+.
T Consensus 499 --~~~g~GlGL~ivk~iv 514 (545)
T PRK15053 499 --EPGEHGIGLYLIASYV 514 (545)
T ss_pred --CCCCceeCHHHHHHHH
Confidence 1344566666655554
No 162
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=85.85 E-value=1.8 Score=43.88 Aligned_cols=79 Identities=19% Similarity=0.273 Sum_probs=52.1
Q ss_pred CCCcceeecchhhHHHHHHHHHHHHhcCCCC-----cceeecceeeEEEEEccCce---eeEeecCCCCCCCcchhhhhh
Q psy1955 275 PTKHEVHFLHEDTIIERVQSMLEKTLLGSNT-----SRVFYTQSTSIQVTVKQGGL---KLLQIQDNGTGIRKEDMDIVC 346 (512)
Q Consensus 275 P~K~eV~f~~~~~I~~~I~~~l~~~l~~~~~-----~r~~~~q~~~i~i~~~~~~~---~~i~v~Dng~gi~~~~l~~~~ 346 (512)
|+=-+|. .|.+.+++.+-+.++|+..+... .++...--+.+++.+...-- -.+.|.|||.|++++=...++
T Consensus 230 PSLP~v~-~d~DqliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~~~lF 308 (363)
T COG3852 230 PSLPEVL-GDRDQLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQDHLF 308 (363)
T ss_pred CCCcccc-CCHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEEEccCceeEeeeeeEEecCCCCCChHHhhhcc
Confidence 4444554 88899999999999999877431 12211111123444332211 157899999999999999999
Q ss_pred hccccCCc
Q psy1955 347 ERFTTSKL 354 (512)
Q Consensus 347 ~~~~TSKi 354 (512)
-...|+|=
T Consensus 309 ~P~Vs~r~ 316 (363)
T COG3852 309 YPMVSGRE 316 (363)
T ss_pred ccccccCC
Confidence 88888773
No 163
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=85.21 E-value=2.8 Score=42.79 Aligned_cols=75 Identities=19% Similarity=0.323 Sum_probs=47.2
Q ss_pred eecCCCcceeecchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccC------c-----eeeEeecCCCCCCCcc
Q psy1955 272 NVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQG------G-----LKLLQIQDNGTGIRKE 340 (512)
Q Consensus 272 NvhP~K~eV~f~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~------~-----~~~i~v~Dng~gi~~~ 340 (512)
+..|....|. .+...+...+.+.+.|++....... .. |.|..... + .-.+.|.|||.||+++
T Consensus 223 ~~~~~~~~i~-~d~~~l~~vl~nLl~NA~~~~~~~~----~~--i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~ 295 (348)
T PRK11073 223 DYDPSLPELA-HDPDQIEQVLLNIVRNALQALGPEG----GT--ITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPH 295 (348)
T ss_pred ecCCCCCcee-eCHHHHHHHHHHHHHHHHHHhccCC----Ce--EEEEEccccccccCCccCCceEEEEEEeCCCCCCHH
Confidence 3334433443 4667788888999999887642111 11 22222111 0 1257899999999999
Q ss_pred hhhhhhhccccCC
Q psy1955 341 DMDIVCERFTTSK 353 (512)
Q Consensus 341 ~l~~~~~~~~TSK 353 (512)
...+++.++.|+|
T Consensus 296 ~~~~iF~~~~~~~ 308 (348)
T PRK11073 296 LQDTLFYPMVSGR 308 (348)
T ss_pred HHhhccCCcccCC
Confidence 9999988877765
No 164
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=84.93 E-value=2.7 Score=48.94 Aligned_cols=66 Identities=17% Similarity=0.285 Sum_probs=45.0
Q ss_pred cchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEc--------------cCceeeEeecCCCCCCCcchhhhhhhc
Q psy1955 283 LHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVK--------------QGGLKLLQIQDNGTGIRKEDMDIVCER 348 (512)
Q Consensus 283 ~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~--------------~~~~~~i~v~Dng~gi~~~~l~~~~~~ 348 (512)
-+...+...+.+.+.|++........ +.|.+... .++.-.+.|.|||.||+++++.+++.+
T Consensus 556 ~d~~~L~qvl~NLl~NAik~~~~~g~-----I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~ 630 (828)
T PRK13837 556 GNPAELQQVLMNLCSNAAQAMDGAGR-----VDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEP 630 (828)
T ss_pred ECHHHHHHHHHHHHHHHHHHcccCCe-----EEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHhhCC
Confidence 45667788888999998876432211 11222222 122235899999999999999999999
Q ss_pred cccCC
Q psy1955 349 FTTSK 353 (512)
Q Consensus 349 ~~TSK 353 (512)
+.++|
T Consensus 631 F~~~~ 635 (828)
T PRK13837 631 FFTTR 635 (828)
T ss_pred cccCC
Confidence 88765
No 165
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=84.68 E-value=3.4 Score=41.27 Aligned_cols=64 Identities=17% Similarity=0.265 Sum_probs=43.9
Q ss_pred cchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCceeeEeecCCCCCCCcchhhhhhhccccC
Q psy1955 283 LHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTS 352 (512)
Q Consensus 283 ~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~~~~~~~TS 352 (512)
.+...+...+.+++.|++..+..... +.|.+.... +.-.+.+.|||.||+++.+.+++.++.+.
T Consensus 225 ~d~~~l~~vl~nll~Nai~~~~~~~~-----i~i~~~~~~-~~~~i~i~d~G~gi~~~~~~~if~~~~~~ 288 (333)
T TIGR02966 225 GDEDELRSAFSNLVSNAIKYTPEGGT-----ITVRWRRDG-GGAEFSVTDTGIGIAPEHLPRLTERFYRV 288 (333)
T ss_pred ECHHHHHHHHHHHHHHhheeCCCCCe-----EEEEEEEcC-CEEEEEEEecCCCCCHHHHhhhccCceec
Confidence 45667788889999998876543221 223333222 22368899999999999999998887643
No 166
>PF14501 HATPase_c_5: GHKL domain
Probab=83.37 E-value=3.7 Score=34.24 Aligned_cols=68 Identities=18% Similarity=0.314 Sum_probs=43.4
Q ss_pred cCHHHHHHHHHHccccCC-----CCeEEEEE-EeCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCC
Q psy1955 25 QRPANALKELLENSLDAK-----STSIQVTV-KQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGF 98 (512)
Q Consensus 25 ~~~~~~v~eLv~Ns~dA~-----a~~i~i~~-~~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~ 98 (512)
.++..++.+|+|||++|. ...|.|.+ ..++...|.|...-.+ +.+.+. +++ ..-+-
T Consensus 4 ~dl~~il~nlldNAiea~~~~~~~~~I~i~~~~~~~~~~i~i~N~~~~----~~~~~~----~~~----------~~~~~ 65 (100)
T PF14501_consen 4 LDLCRILGNLLDNAIEACKKYEDKRFISISIREENGFLVIIIENSCEK----EIEKLE----SSS----------SKKKG 65 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCEEEEEEEECCCC----cccccc----ccc----------cCCCC
Confidence 367889999999999974 34677777 3556667778777444 111111 221 11245
Q ss_pred cchhhhhhhccc
Q psy1955 99 RGEALASISHVA 110 (512)
Q Consensus 99 rGeaL~si~~~s 110 (512)
+|.+|.++..+.
T Consensus 66 ~G~GL~~v~~i~ 77 (100)
T PF14501_consen 66 HGIGLKNVKKIL 77 (100)
T ss_pred CCcCHHHHHHHH
Confidence 688888887763
No 167
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=82.79 E-value=18 Score=42.92 Aligned_cols=76 Identities=14% Similarity=0.217 Sum_probs=52.3
Q ss_pred EEeecCCCcceeecchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCceeeEeecCCCCCCCcchhhhhhhcc
Q psy1955 270 DVNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERF 349 (512)
Q Consensus 270 DVNvhP~K~eV~f~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~~~~~~ 349 (512)
.+++.|+......-+...+...+.+++.|++....... +.|.+... .+.-.+.|.|+|.||+++++.+++.++
T Consensus 545 ~~~i~~~~~~~v~~D~~~L~qvl~NLl~NAik~t~~G~------I~I~v~~~-~~~l~i~V~DtG~GI~~e~~~~lFepF 617 (924)
T PRK10841 545 YCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGC------IVLHVRVD-GDYLSFRVRDTGVGIPAKEVVRLFDPF 617 (924)
T ss_pred EEEeCCCCCcEEEECHHHHHHHHHHHHHHHHhhCCCCc------EEEEEEEe-CCEEEEEEEEcCcCCCHHHHHHHhccc
Confidence 34455554444456788888999999999997754322 12333332 233468899999999999999999887
Q ss_pred ccC
Q psy1955 350 TTS 352 (512)
Q Consensus 350 ~TS 352 (512)
.+.
T Consensus 618 ~~~ 620 (924)
T PRK10841 618 FQV 620 (924)
T ss_pred ccC
Confidence 654
No 168
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=82.77 E-value=2.2 Score=46.27 Aligned_cols=83 Identities=24% Similarity=0.468 Sum_probs=56.6
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEEEeeCCCceEEEeecCCCcceeecchhhHHHHHHHHHHHHhcCCCCcceeecceeeEE
Q psy1955 238 IKRMIEQVYSIYLPKGSFPFVYLSLCMDPKNVDVNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQ 317 (512)
Q Consensus 238 i~k~I~~~Y~~~l~~~~~P~~~L~i~ipp~~iDVNvhP~K~eV~f~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~ 317 (512)
+.-|+.+...+|-.....++ -|.=.+||..+ |.+..| .++..+++++.|++..+..+++ .
T Consensus 444 L~~AL~~~~~~f~~qtg~~~-~l~~qlp~~~l-----pa~qqv------HlLqIvREAlsNa~KHa~As~i--------~ 503 (574)
T COG3850 444 LPPALEQMLAEFSNQTGITV-TLDYQLPPRAL-----PAHQQV------HLLQIVREALSNAIKHAQASEI--------K 503 (574)
T ss_pred hHHHHHHHHHHHHhccCCeE-EEeccCCCCCC-----CHHHHH------HHHHHHHHHHHHHHHhcccCeE--------E
Confidence 67788888888754333322 35556676663 333333 4678899999999988777764 3
Q ss_pred EEEccC-ceeeEeecCCCCCCCcc
Q psy1955 318 VTVKQG-GLKLLQIQDNGTGIRKE 340 (512)
Q Consensus 318 i~~~~~-~~~~i~v~Dng~gi~~~ 340 (512)
|..... |--.+.|+||||||++.
T Consensus 504 V~~~~~~g~~~~~VeDnG~Gi~~~ 527 (574)
T COG3850 504 VTVSQNDGQVTLTVEDNGVGIDEA 527 (574)
T ss_pred EEEEecCCeEEEEEeeCCcCCCCc
Confidence 333333 55588999999999987
No 169
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=82.71 E-value=3.8 Score=48.04 Aligned_cols=73 Identities=15% Similarity=0.275 Sum_probs=48.8
Q ss_pred eecCCCcceeecchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCc-eeeEeecCCCCCCCcchhhhhhhccc
Q psy1955 272 NVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGG-LKLLQIQDNGTGIRKEDMDIVCERFT 350 (512)
Q Consensus 272 NvhP~K~eV~f~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~-~~~i~v~Dng~gi~~~~l~~~~~~~~ 350 (512)
++.|+-......+...+...+.+++.|++....... |.|.....+ .-.+.|.|+|+||+++++.+++.++.
T Consensus 546 ~~~~~~~~~v~~d~~~l~qil~NLl~NAik~~~~g~--------I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~ 617 (914)
T PRK11466 546 DIADDLPTALMGDPRRIRQVITNLLSNALRFTDEGS--------IVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFV 617 (914)
T ss_pred EeCCCCCceEEECHHHHHHHHHHHHHHHHHhCCCCe--------EEEEEEEcCCEEEEEEEECCCCCCHHHHHHHhchhh
Confidence 333333333445777888889999999997754321 333333222 23589999999999999999998876
Q ss_pred cC
Q psy1955 351 TS 352 (512)
Q Consensus 351 TS 352 (512)
+.
T Consensus 618 ~~ 619 (914)
T PRK11466 618 QV 619 (914)
T ss_pred cC
Confidence 43
No 170
>PRK09835 sensor kinase CusS; Provisional
Probab=82.39 E-value=4.2 Score=43.47 Aligned_cols=64 Identities=17% Similarity=0.214 Sum_probs=45.3
Q ss_pred cchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccC-ceeeEeecCCCCCCCcchhhhhhhccccCC
Q psy1955 283 LHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQG-GLKLLQIQDNGTGIRKEDMDIVCERFTTSK 353 (512)
Q Consensus 283 ~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~-~~~~i~v~Dng~gi~~~~l~~~~~~~~TSK 353 (512)
.+...+...+.+.+.|++..+.... . |.|..... +.-.+.|.|+|.|++++++..+..++.+..
T Consensus 371 ~d~~~l~~vl~nll~Na~~~~~~~~-----~--I~i~~~~~~~~~~i~v~d~G~gi~~~~~~~if~~f~~~~ 435 (482)
T PRK09835 371 GDPLMLRRAISNLLSNALRYTPAGE-----A--ITVRCQEVDHQVQLVVENPGTPIAPEHLPRLFDRFYRVD 435 (482)
T ss_pred ECHHHHHHHHHHHHHHHHhcCCCCC-----e--EEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhCCcccCC
Confidence 5677788889999999987653221 1 33333322 223589999999999999999999877653
No 171
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=82.24 E-value=4.3 Score=42.85 Aligned_cols=60 Identities=20% Similarity=0.296 Sum_probs=42.8
Q ss_pred cchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccC-ceeeEeecCCCCCCCcchhhhhhhcccc
Q psy1955 283 LHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQG-GLKLLQIQDNGTGIRKEDMDIVCERFTT 351 (512)
Q Consensus 283 ~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~-~~~~i~v~Dng~gi~~~~l~~~~~~~~T 351 (512)
.+...+...+.+.+.|++..+... |.|..... +.-.+.|.|||.||+++++.++..+++.
T Consensus 327 ~~~~~l~~il~NLl~NA~k~~~~~---------i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~~~f~~ 387 (435)
T PRK09467 327 MNPIAIKRALANLVVNAARYGNGW---------IKVSSGTEGKRAWFQVEDDGPGIPPEQLKHLFQPFTR 387 (435)
T ss_pred ECHHHHHHHHHHHHHHHHHhCCCe---------EEEEEEecCCEEEEEEEecCCCcCHHHHHHhcCCccc
Confidence 456667788899999998765322 33433322 2235899999999999999999888653
No 172
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=81.55 E-value=9.5 Score=44.57 Aligned_cols=76 Identities=14% Similarity=0.233 Sum_probs=50.8
Q ss_pred EEeecCCCcceeecchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccC--c--eeeEeecCCCCCCCcchhhhh
Q psy1955 270 DVNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQG--G--LKLLQIQDNGTGIRKEDMDIV 345 (512)
Q Consensus 270 DVNvhP~K~eV~f~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~--~--~~~i~v~Dng~gi~~~~l~~~ 345 (512)
.+.+.|+.......+...+...+.+.+.|++..+.... +.|.|..... + .-.+.|.|+|+||+++++.++
T Consensus 391 ~~~~~~~~~~~~~~d~~~l~~vl~NLl~NAik~~~~g~------v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~i 464 (919)
T PRK11107 391 TLNIDPDVPDNVIGDPLRLQQIITNLVGNAIKFTESGN------IDILVELRALSNTKVQLEVQIRDTGIGISERQQSQL 464 (919)
T ss_pred EEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhcCCCCc------EEEEEEEEecCCCeeEEEEEEEEeCCCcCHHHHHHH
Confidence 34444554444556788888899999999997754321 1133333221 1 125889999999999999999
Q ss_pred hhcccc
Q psy1955 346 CERFTT 351 (512)
Q Consensus 346 ~~~~~T 351 (512)
+.++..
T Consensus 465 f~~f~~ 470 (919)
T PRK11107 465 FQAFRQ 470 (919)
T ss_pred hhhhcc
Confidence 988664
No 173
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=81.11 E-value=7.6 Score=44.39 Aligned_cols=96 Identities=13% Similarity=0.219 Sum_probs=62.3
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEEEeeCCCceEEEeecCCCcceeecchhhHHHHHHHHHHHHhcCCCCcceeecceeeEE
Q psy1955 238 IKRMIEQVYSIYLPKGSFPFVYLSLCMDPKNVDVNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQ 317 (512)
Q Consensus 238 i~k~I~~~Y~~~l~~~~~P~~~L~i~ipp~~iDVNvhP~K~eV~f~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~ 317 (512)
+...+.++-...- .+++-..+.+.+|++..=++++ ...|.+.+-++|+|++.-+..... |.
T Consensus 738 veEvVg~Al~r~~--k~~~~~~i~v~~~~dl~li~~D----------~~LieQVLiNLleNA~Kyap~~s~-------I~ 798 (890)
T COG2205 738 VEEVVGEALQRLR--KRFTGHKIVVSVPVDLPLIHVD----------SPLIEQVLINLLENALKYAPPGSE-------IR 798 (890)
T ss_pred HHHHHHHHHHHhh--hhcCCceEEEecCCCCceEecC----------HHHHHHHHHHHHHHHHhhCCCCCe-------EE
Confidence 4555665555431 1223334778888887777764 456667788888888866543321 33
Q ss_pred EEEccCcee-eEeecCCCCCCCcchhhhhhhccccC
Q psy1955 318 VTVKQGGLK-LLQIQDNGTGIRKEDMDIVCERFTTS 352 (512)
Q Consensus 318 i~~~~~~~~-~i~v~Dng~gi~~~~l~~~~~~~~TS 352 (512)
|.....+.+ .+.|.|||.||++.++.+++.++++-
T Consensus 799 I~~~~~~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~ 834 (890)
T COG2205 799 INAGVERENVVFSVIDEGPGIPEGELERIFDKFYRG 834 (890)
T ss_pred EEEEEecceEEEEEEeCCCCCChhHHHHhhhhhhcC
Confidence 443333322 57899999999999999999887754
No 174
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=81.05 E-value=3.8 Score=44.51 Aligned_cols=62 Identities=19% Similarity=0.390 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccC-ceeeEeecCCCCCCCcchhhhhhhccccCC
Q psy1955 287 TIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQG-GLKLLQIQDNGTGIRKEDMDIVCERFTTSK 353 (512)
Q Consensus 287 ~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~-~~~~i~v~Dng~gi~~~~l~~~~~~~~TSK 353 (512)
.+...+.+++.|++....... ...|.|..... +.-.+.|.|||.||++++..+++.++.++|
T Consensus 433 ~l~~vl~nLl~NAi~~~~~~~-----~~~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~iF~~~~~~~ 495 (542)
T PRK11086 433 ELITILGNLIENALEAVGGEE-----GGEISVSLHYRNGWLHCEVSDDGPGIAPDEIDAIFDKGYSTK 495 (542)
T ss_pred HHHHHHHHHHHHHHHHhhcCC-----CcEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHhCCCccC
Confidence 466677888888886632110 01133444322 223689999999999999999999887776
No 175
>KOG0355|consensus
Probab=76.46 E-value=6.4 Score=44.79 Aligned_cols=49 Identities=24% Similarity=0.340 Sum_probs=39.5
Q ss_pred CcccCHHHHHHHHHHcccc----CCCCeEEEEEEeCCeeeEEEEeCCCCCCHHh
Q psy1955 22 EVIQRPANALKELLENSLD----AKSTSIQVTVKQGGLKLLQIQDNGTGIRKED 71 (512)
Q Consensus 22 ~~i~~~~~~v~eLv~Ns~d----A~a~~i~i~~~~~~~~~i~v~DnG~Gi~~~~ 71 (512)
..++-+..+.-|++.||.| ++-..|.+.++.+.. .|.|.|||.||+-+.
T Consensus 49 t~~pGl~ki~dEilvNaadk~rd~~m~~i~v~i~~e~~-~isv~nnGkGIPv~~ 101 (842)
T KOG0355|consen 49 TYVPGLYKIFDEILVNAADKQRDPKMNTIKVTIDKEKN-EISVYNNGKGIPVTI 101 (842)
T ss_pred ecCCcHHHHHHHHhhcccccccCCCcceeEEEEccCCC-EEEEEeCCCcceeee
Confidence 5678899999999999998 334567788876644 499999999999664
No 176
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=76.01 E-value=8.4 Score=39.88 Aligned_cols=76 Identities=28% Similarity=0.383 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCce-eeEeecCCCCCCCcchhhhhhhccccCCcccccccccccc
Q psy1955 287 TIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGGL-KLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSIST 365 (512)
Q Consensus 287 ~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~~-~~i~v~Dng~gi~~~~l~~~~~~~~TSKi~~~~dl~~~~t 365 (512)
.+.+.+-+.+.|++.-+..--. |+|.....+. -.+++.|+|.||+.+|+..++-||+.- ++. .-.+
T Consensus 342 K~tQVldNii~NA~KYsP~Gg~-------Itv~~~~~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRv-----dkA-RsR~ 408 (459)
T COG5002 342 KMTQVLDNIISNALKYSPDGGR-------ITVSVKQRETWVEISISDQGLGIPKEDLEKIFDRFYRV-----DKA-RSRK 408 (459)
T ss_pred HHHHHHHHHHHHHhhcCCCCCe-------EEEEEeeeCcEEEEEEccCCCCCCchhHHHHHHHHhhh-----hhh-hhhc
Confidence 3566677777787765532211 4555554433 378999999999999999999887632 111 2257
Q ss_pred ccccchhhhh
Q psy1955 366 FGFRGEALAS 375 (512)
Q Consensus 366 ~GfRGeALaS 375 (512)
.|--|--||=
T Consensus 409 ~gGTGLGLaI 418 (459)
T COG5002 409 MGGTGLGLAI 418 (459)
T ss_pred CCCCchhHHH
Confidence 7888877753
No 177
>PRK13557 histidine kinase; Provisional
Probab=75.48 E-value=10 Score=40.99 Aligned_cols=63 Identities=16% Similarity=0.222 Sum_probs=40.9
Q ss_pred chhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEc----------------cCceeeEeecCCCCCCCcchhhhhhh
Q psy1955 284 HEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVK----------------QGGLKLLQIQDNGTGIRKEDMDIVCE 347 (512)
Q Consensus 284 ~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~----------------~~~~~~i~v~Dng~gi~~~~l~~~~~ 347 (512)
+...+...+.+.+.|++........ |.|... ..+.-.+.|.|||.||+++...++..
T Consensus 274 d~~~l~~vl~nll~NA~~~~~~~~~-------i~i~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~ 346 (540)
T PRK13557 274 DPTQAEVALLNVLINARDAMPEGGR-------VTIRTRNVEIEDEDLAMYHGLPPGRYVSIAVTDTGSGMPPEILARVMD 346 (540)
T ss_pred CHHHHHHHHHHHHHHHHHhcccCCe-------EEEEEeeeccCccccccccCCCCCCEEEEEEEcCCCCCCHHHHHhccC
Confidence 4555666677788887765432211 112111 11223589999999999999999998
Q ss_pred ccccCC
Q psy1955 348 RFTTSK 353 (512)
Q Consensus 348 ~~~TSK 353 (512)
++.+.|
T Consensus 347 ~~~~~~ 352 (540)
T PRK13557 347 PFFTTK 352 (540)
T ss_pred CCcccC
Confidence 887765
No 178
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=73.05 E-value=8.8 Score=41.93 Aligned_cols=49 Identities=20% Similarity=0.272 Sum_probs=32.2
Q ss_pred hhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCc-eeeEeecCCCCCCCcch
Q psy1955 285 EDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGG-LKLLQIQDNGTGIRKED 341 (512)
Q Consensus 285 ~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~-~~~i~v~Dng~gi~~~~ 341 (512)
...+...+++++.|++......+ |.|.....+ .-.+.|.|||+|+++++
T Consensus 408 ~~~L~ril~nlL~NAiKha~~~~--------I~I~l~~~~~~i~l~V~DnG~Gi~~~~ 457 (495)
T PRK11644 408 RVTLFRVCQEGLNNIVKHADASA--------VTLQGWQQDERLMLVIEDDGSGLPPGS 457 (495)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCE--------EEEEEEEcCCEEEEEEEECCCCCCcCC
Confidence 34566778888888887654332 444443322 23689999999998753
No 179
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=71.57 E-value=9.1 Score=39.81 Aligned_cols=52 Identities=23% Similarity=0.386 Sum_probs=38.6
Q ss_pred chhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCce-eeEeecCCCCCCCcchhh
Q psy1955 284 HEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGGL-KLLQIQDNGTGIRKEDMD 343 (512)
Q Consensus 284 ~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~~-~~i~v~Dng~gi~~~~l~ 343 (512)
.+..++-.++|+|.|++..+..+. +.|.+...+. -.++|.|||.|.+++...
T Consensus 276 ~e~~l~rivQEaltN~~rHa~A~~--------v~V~l~~~~~~l~l~V~DnG~Gf~~~~~~ 328 (365)
T COG4585 276 AEDALFRIVQEALTNAIRHAQATE--------VRVTLERTDDELRLEVIDNGVGFDPDKEG 328 (365)
T ss_pred HHHHHHHHHHHHHHHHHhccCCce--------EEEEEEEcCCEEEEEEEECCcCCCccccC
Confidence 367788899999999998877664 4444544433 368999999999987643
No 180
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=69.75 E-value=28 Score=27.30 Aligned_cols=79 Identities=22% Similarity=0.330 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhcCCCCcceeecceeeEEEEEccCceeeEeecCCCCCCCcchhhhhhhccccCCcccccccccccccccc
Q psy1955 290 ERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFR 369 (512)
Q Consensus 290 ~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~~~~~~~TSKi~~~~dl~~~~t~GfR 369 (512)
..+.+.+.+++...... ...+.|.+.... +.-.+.+.|+|.|+++..+..+..++ .+.. .-..-+-.
T Consensus 3 ~~~~~ll~Na~~~~~~~----~~~v~i~~~~~~-~~~~v~i~d~g~g~~~~~~~~~~~~~--~~~~------~~~~~~~~ 69 (103)
T cd00075 3 QVLLNLLSNAIKHTPEG----GGRITISVERDG-DHLEIRVEDNGPGIPEEDLERIFERF--SDGS------RSRKGGGT 69 (103)
T ss_pred HHHHHHHHHHHHhCcCC----CCeEEEEEEecC-CEEEEEEEeCCCCCCHHHHHHHhhhh--hcCC------CCCCCCcc
Confidence 45677777877665430 111123333332 23367889999999999988877653 1111 11233455
Q ss_pred chhhhhHhhhcc
Q psy1955 370 GEALASISHVAH 381 (512)
Q Consensus 370 GeALaSi~~~s~ 381 (512)
|..|+.+..++.
T Consensus 70 g~gl~~~~~~~~ 81 (103)
T cd00075 70 GLGLSIVKKLVE 81 (103)
T ss_pred ccCHHHHHHHHH
Confidence 666766666653
No 181
>PRK13560 hypothetical protein; Provisional
Probab=65.15 E-value=17 Score=41.50 Aligned_cols=72 Identities=15% Similarity=0.237 Sum_probs=38.8
Q ss_pred CCceEEEeecCCCcceeecchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEcc--CceeeEeecCCCCCCCcc
Q psy1955 265 DPKNVDVNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQ--GGLKLLQIQDNGTGIRKE 340 (512)
Q Consensus 265 pp~~iDVNvhP~K~eV~f~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~--~~~~~i~v~Dng~gi~~~ 340 (512)
+...+++.+.|+...+.......+...+.+++.|++........ ...|.|.... .+.-.+.|.|||+||+++
T Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~NLl~NAik~~~~~~~----~~~i~i~~~~~~~~~v~i~V~D~G~GI~~~ 762 (807)
T PRK13560 689 DFGRIDCKIDADDGCLDIDKAIPCGLIISELLSNALKHAFPDGA----AGNIKVEIREQGDGMVNLCVADDGIGLPAG 762 (807)
T ss_pred ccCceEEEEecCccccccccccchHHHHHHHHHHHHHhhccCCC----CceEEEEEEEcCCCEEEEEEEeCCCcCCcc
Confidence 33455666666555544433333344566777777764321100 0013333332 233468999999999975
No 182
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=64.68 E-value=20 Score=39.85 Aligned_cols=73 Identities=15% Similarity=0.252 Sum_probs=46.9
Q ss_pred cchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccC-ceeeEeecCCCCCCCcchhhhhhhccccCCcc
Q psy1955 283 LHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQG-GLKLLQIQDNGTGIRKEDMDIVCERFTTSKLT 355 (512)
Q Consensus 283 ~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~-~~~~i~v~Dng~gi~~~~l~~~~~~~~TSKi~ 355 (512)
.|...+-+.+-+.++|+-.+......-....-+|.+..... |--.+.|.|||.|.+.++.-+..++|.|.|=.
T Consensus 596 ~D~~~l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~r~r~~EPYvTtr~K 669 (712)
T COG5000 596 ADATLLGQVFGNLLKNAAEAIEAVEAEERRTALIRVSLDDADGRIVVDVIDNGKGFPRENRHRALEPYVTTREK 669 (712)
T ss_pred cCHHHHHHHHHHHHHhHHHHhhhcccccCCcceEEEEEecCCCeEEEEEecCCCCCChHHhhhhccCceecccc
Confidence 35666666666666666655432211111112344444433 33367899999999999999999999998744
No 183
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=64.18 E-value=20 Score=43.46 Aligned_cols=66 Identities=15% Similarity=0.355 Sum_probs=46.1
Q ss_pred cchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEc---cC-ceeeEeecCCCCCCCcchhhhhhhccccCCc
Q psy1955 283 LHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVK---QG-GLKLLQIQDNGTGIRKEDMDIVCERFTTSKL 354 (512)
Q Consensus 283 ~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~---~~-~~~~i~v~Dng~gi~~~~l~~~~~~~~TSKi 354 (512)
-+...+...+.+.+.|++........ .|.+... .. +.-.+.|.|||.||+++++.++..++.+.+-
T Consensus 824 ~d~~~l~qvl~NLl~NAik~~~~g~i------~i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~ 893 (1197)
T PRK09959 824 IDPQAFKQVLSNLLSNALKFTTEGAV------KITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSA 893 (1197)
T ss_pred ECHHHHHHHHHHHHHHHHHhCCCCCE------EEEEEEeeecCCceEEEEEEEEcCCCCCHHHHHHhhcccccccc
Confidence 56778888999999999987543211 1222211 11 1225789999999999999999999887653
No 184
>KOG0020|consensus
Probab=61.08 E-value=41 Score=36.40 Aligned_cols=116 Identities=23% Similarity=0.314 Sum_probs=69.3
Q ss_pred eEeecCCCCCCCcchhhhhhhccc---cC----Ccccccccccc--ccccccchhhhhHhhhcc-eEEEEecCCCCCceE
Q psy1955 327 LLQIQDNGTGIRKEDMDIVCERFT---TS----KLTQFEDLNSI--STFGFRGEALASISHVAH-LTIITKTKTSPCAYR 396 (512)
Q Consensus 327 ~i~v~Dng~gi~~~~l~~~~~~~~---TS----Ki~~~~dl~~~--~t~GfRGeALaSi~~~s~-l~I~T~~~~~~~~~~ 396 (512)
...+.|.|.||..+||..--..-| || |..+..+...+ .-.|=-|-..+|.--|+. +.|+|++.++. .|-
T Consensus 143 lLhi~DtGiGMT~edLi~NLGTIAkSGTs~Fl~Km~~~~~~~~~~~dlIGQFGVGFYsAfLVAD~vvVtsKhNdD~-Qyi 221 (785)
T KOG0020|consen 143 LLHITDTGIGMTREDLIKNLGTIAKSGTSEFLEKMQDSGDSEGLMNDLIGQFGVGFYSAFLVADRVVVTSKHNDDS-QYI 221 (785)
T ss_pred eeeEecccCCccHHHHHHhhhhhhcccHHHHHHHhhccccchhhHHHHHHhcchhhhhhhhhcceEEEEeccCCcc-cee
Confidence 567889999999999987322222 22 33333333211 245556667777777885 88899988753 333
Q ss_pred EEEecCccc--ccccccCCCCCceEEehhhcccchhhhcccCCCh---HHHHHHHHHHHHHhhc
Q psy1955 397 ASYIDSKLK--DPIKPCAGNQGTQIIAEDLFYNIPTRRKALKQPS---EEYNKIADVVSRYAVH 455 (512)
Q Consensus 397 ~~~~~~~~~--~~~~~~~~~~GTtV~V~~lF~n~PvRrk~~~~~~---~e~~~i~~~l~~yaL~ 455 (512)
|....+... .......-.+||+|+. +++... -|...+++++..|+-.
T Consensus 222 WESdan~FsvseDprg~tL~RGt~ItL------------~LkeEA~dyLE~dtlkeLvkkYSqF 273 (785)
T KOG0020|consen 222 WESDANSFSVSEDPRGNTLGRGTEITL------------YLKEEAGDYLEEDTLKELVKKYSQF 273 (785)
T ss_pred eeccCcceeeecCCCCCcccCccEEEE------------EehhhhhhhcchhHHHHHHHHHHHh
Confidence 333322221 1112234568999987 444322 3556789999999863
No 185
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=60.01 E-value=22 Score=39.38 Aligned_cols=49 Identities=27% Similarity=0.388 Sum_probs=32.5
Q ss_pred hhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccC-ceeeEeecCCCCCCCcch
Q psy1955 285 EDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQG-GLKLLQIQDNGTGIRKED 341 (512)
Q Consensus 285 ~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~-~~~~i~v~Dng~gi~~~~ 341 (512)
+..+...+++++.|++....... |.|..... +.-.+.|.|||.||+++.
T Consensus 467 ~~~l~~il~ell~NA~kha~a~~--------i~V~~~~~~~~~~l~V~D~G~Gi~~~~ 516 (569)
T PRK10600 467 AIHLLQIAREALSNALKHAQASE--------VVVTVAQNQNQVKLSVQDNGCGVPENA 516 (569)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCe--------EEEEEEEcCCEEEEEEEECCCCCCccc
Confidence 34577889999999887654322 33444332 233688999999998753
No 186
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=52.98 E-value=1.1e+02 Score=24.07 Aligned_cols=63 Identities=17% Similarity=0.351 Sum_probs=41.3
Q ss_pred hhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCceeeEeecCCCCCCCcchhhhhhhccccCC
Q psy1955 285 EDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSK 353 (512)
Q Consensus 285 ~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~~~~~~~TSK 353 (512)
...+...+.+.+.+++...... ..+.|++.... +.-.+.+.|+|.|+.++++..+..+...++
T Consensus 3 ~~~l~~~~~~l~~n~~~~~~~~-----~~v~i~~~~~~-~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~ 65 (111)
T smart00387 3 PDRLRQVLSNLLDNAIKYTPEG-----GRITVTLERDG-DHLEITVEDNGPGIPPEDLEKIFEPFFRTD 65 (111)
T ss_pred HHHHHHHHHHHHHHHHhcCCCC-----CeEEEEEEEcC-CEEEEEEEeCCCCCCHHHHHHHhcCeEECC
Confidence 3456677888888888765541 11224444332 334688899999999999988877755444
No 187
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=49.31 E-value=68 Score=29.22 Aligned_cols=60 Identities=10% Similarity=0.081 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCceeeEeecCCCCCCCcchhhhhhhc
Q psy1955 286 DTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCER 348 (512)
Q Consensus 286 ~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~~~~~ 348 (512)
..+..++.+++.|++..+.... ....+.|.+... .+.-.+.|.|+|.|+++..+......
T Consensus 41 ~~l~lav~Ea~~Nai~Hg~~~~--~~~~I~I~~~~~-~~~l~i~V~D~G~g~d~~~~~~~~~p 100 (161)
T PRK04069 41 EDMKIAVSEACTNAVQHAYKED--EVGEIHIRFEIY-EDRLEIVVADNGVSFDYETLKSKLGP 100 (161)
T ss_pred HHHHHHHHHHHHHHHHhccCCC--CCCeEEEEEEEE-CCEEEEEEEECCcCCChHHhccccCC
Confidence 3455567777777776543211 001122333333 22346899999999997766544333
No 188
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=47.22 E-value=77 Score=33.23 Aligned_cols=86 Identities=17% Similarity=0.235 Sum_probs=50.7
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEEEeeCCCceEEEeecCCCcceeecchhhHHHHHHHHHHHHhcCCCCcceeecceeeEE
Q psy1955 238 IKRMIEQVYSIYLPKGSFPFVYLSLCMDPKNVDVNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQ 317 (512)
Q Consensus 238 i~k~I~~~Y~~~l~~~~~P~~~L~i~ipp~~iDVNvhP~K~eV~f~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~ 317 (512)
+.++|.+..+++--.++.-.|=++-.+.+...|-+ +++ .++..++|.+.|.....+.+++ .|+
T Consensus 372 l~qai~~l~~Em~~~ergihcq~~~~~n~~~ldet-------~rv----TLyRl~QE~LNNI~KHA~AS~V------~i~ 434 (497)
T COG3851 372 LEQAIRSLLREMELEERGIHCQLDWRINETALDET-------QRV----TLYRLCQELLNNICKHADASAV------TIQ 434 (497)
T ss_pred HHHHHHHHHHHhhhhhcCeEEEeccccCcccCCcc-------eeE----eHHHHHHHHHHHHHhccccceE------EEE
Confidence 78888888888743444444433333333333322 222 3566677777777766666543 245
Q ss_pred EEEccCceeeEeecCCCCCCCcch
Q psy1955 318 VTVKQGGLKLLQIQDNGTGIRKED 341 (512)
Q Consensus 318 i~~~~~~~~~i~v~Dng~gi~~~~ 341 (512)
+.+.++ .--.+|+|||.|++++.
T Consensus 435 l~~~~e-~l~Lei~DdG~Gl~~~~ 457 (497)
T COG3851 435 LWQQDE-RLMLEIEDDGSGLPPGS 457 (497)
T ss_pred EeeCCc-EEEEEEecCCcCCCCCC
Confidence 554432 12368899999999763
No 189
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=44.14 E-value=59 Score=35.12 Aligned_cols=67 Identities=24% Similarity=0.231 Sum_probs=46.7
Q ss_pred cchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEE--ccCceeeEeecCCCCCCCcchhhhhhhccccCCcc
Q psy1955 283 LHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTV--KQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLT 355 (512)
Q Consensus 283 ~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~--~~~~~~~i~v~Dng~gi~~~~l~~~~~~~~TSKi~ 355 (512)
-++-.|-..+-+.+-|+++++.... .+ |.|+. ..++...+-+.|||.|-+-+=+..+..+++|||--
T Consensus 560 gd~v~ieQVlvNl~~NaldA~~h~~---p~---i~~~~~~~~~e~l~i~i~DnGqGwp~~l~dkLl~PFttsK~v 628 (673)
T COG4192 560 GDAVSIEQVLVNLIVNALDASTHFA---PW---IKLIALGTEQEMLRIAIIDNGQGWPHELVDKLLTPFTTSKEV 628 (673)
T ss_pred chhhhHHHHHHHHHHHHHhhhccCC---ce---EEEEeecCcccceEEEEecCCCCCchhHHHHhcCCccccccc
Confidence 3444555667888888888865432 11 32222 24456688999999999988888888999999954
No 190
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=42.49 E-value=72 Score=34.87 Aligned_cols=48 Identities=17% Similarity=0.344 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCceeeEeecCCCCCCCcc
Q psy1955 287 TIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGGLKLLQIQDNGTGIRKE 340 (512)
Q Consensus 287 ~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~ 340 (512)
.+...+.+++.|++......+ +.|.+.....+.-.+.|.|||+||++.
T Consensus 471 ~l~qv~~nll~NA~k~~~~~~------i~i~~~~~~~~~~~i~V~D~G~Gi~~~ 518 (565)
T PRK10935 471 HLLQIIREATLNAIKHANASE------IAVSCVTNPDGEHTVSIRDDGIGIGEL 518 (565)
T ss_pred HHHHHHHHHHHHHHhcCCCCe------EEEEEEEcCCCEEEEEEEECCcCcCCC
Confidence 466778888888887543221 112332232333468899999999874
No 191
>KOG1845|consensus
Probab=41.78 E-value=31 Score=39.53 Aligned_cols=86 Identities=22% Similarity=0.288 Sum_probs=50.9
Q ss_pred HHHHHHHHHHcccc---CCCCeEEEE---EEeCC-eeeEEE-----EeCCCCCCHHhHHHHHhhcccCCCCCcccccccc
Q psy1955 27 PANALKELLENSLD---AKSTSIQVT---VKQGG-LKLLQI-----QDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSIS 94 (512)
Q Consensus 27 ~~~~v~eLv~Ns~d---A~a~~i~i~---~~~~~-~~~i~v-----~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~ 94 (512)
-..++.||++||+| .||+-+.+- ...+. .....| .|||-||.++-+.....-.+.+|+. +..--...
T Consensus 147 a~~a~aeLldnalDEi~~~~tf~~vd~I~p~~d~~i~a~~v~~~~~s~~gg~~~~~~i~~~m~l~~~~k~e-~~~tv~q~ 225 (775)
T KOG1845|consen 147 AKGAIAELLDNALDEITNGATFVRVDYINPVMDIFIRALVVQLKRISDDGGGMKPEVIRKCMSLGYSSKKE-ANSTVGQY 225 (775)
T ss_pred ccChhhhhccccccccccccceEEeeeecccccccceeEEeeccceeccccccCHHHHHHHHHhhhhhhhh-hhhhhhhh
Confidence 34589999999999 566653321 11222 222334 4889999999988766667777762 22212223
Q ss_pred ccCCcchhhhhhhccc-eEEEEEe
Q psy1955 95 TFGFRGEALASISHVA-HLTIITK 117 (512)
Q Consensus 95 ~~G~rGeaL~si~~~s-~l~i~S~ 117 (512)
..||.+ |...++ .+.+.+|
T Consensus 226 ~~gfkt----st~rlGa~~i~~~R 245 (775)
T KOG1845|consen 226 GNGFKT----STMRLGADAIVFSR 245 (775)
T ss_pred cccccc----chhhhccceeEeeh
Confidence 445543 444465 4666666
No 192
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=36.29 E-value=1e+02 Score=34.63 Aligned_cols=72 Identities=13% Similarity=0.252 Sum_probs=50.1
Q ss_pred EEEeecCCCcceeecchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCcee-eEeecCCCCCCCcchhhhhhh
Q psy1955 269 VDVNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGGLK-LLQIQDNGTGIRKEDMDIVCE 347 (512)
Q Consensus 269 iDVNvhP~K~eV~f~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~~~-~i~v~Dng~gi~~~~l~~~~~ 347 (512)
+.+-+-| --|.+.+...+-+...+++.|++.-.... +..|+|.....+.. .+.|.|||.||++.-+.+.+.
T Consensus 620 aei~i~~--lp~v~~d~~~l~qv~~NLi~Naik~~~~e------~~~i~I~~~r~ed~~t~sV~dng~Gi~~a~~~riF~ 691 (750)
T COG4251 620 AEIRIAP--LPVVAADATQLGQVFQNLIANAIKFGGPE------NPDIEISAERQEDEWTFSVRDNGIGIDPAYFERIFV 691 (750)
T ss_pred ceEEecc--cceeecCHHHHHHHHHHHHhhheecCCCC------CCceEEeeeccCCceEEEecCCCCCcCHHHHHHHHH
Confidence 3344445 34556788888888889998888654322 11267776655544 679999999999998888654
Q ss_pred c
Q psy1955 348 R 348 (512)
Q Consensus 348 ~ 348 (512)
-
T Consensus 692 i 692 (750)
T COG4251 692 I 692 (750)
T ss_pred H
Confidence 4
No 193
>cd02414 jag_KH jag_K homology RNA-binding domain. The KH domain is found in proteins homologous to the Bacillus subtilis protein Jag, which is associated with SpoIIIJ and is necessary for the third stage of sporulation. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=34.08 E-value=1.5e+02 Score=23.39 Aligned_cols=44 Identities=11% Similarity=0.148 Sum_probs=38.4
Q ss_pred EEeeCCCceEEEeecCCCcceeecchhhHHHHHHHHHHHHhcCC
Q psy1955 260 LSLCMDPKNVDVNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGS 303 (512)
Q Consensus 260 L~i~ipp~~iDVNvhP~K~eV~f~~~~~I~~~I~~~l~~~l~~~ 303 (512)
+.+....+.+.+|++|+...+.+-..++.+++++-.+...+...
T Consensus 17 v~~~~~~~~i~i~i~~~~~g~LIGk~G~tL~AlQ~L~~~~~~~~ 60 (77)
T cd02414 17 VDVEEEGDTVEVNISGDDIGLLIGKRGKTLDALQYLANLVLNRN 60 (77)
T ss_pred EEEEecCCEEEEEEecCCCCeEECCCCccHHHHHHHHHHHHhhc
Confidence 45556778899999999999999999999999999999888754
No 194
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.62 E-value=1.4e+02 Score=27.19 Aligned_cols=55 Identities=16% Similarity=0.138 Sum_probs=37.5
Q ss_pred CcccCHHHHHHHHHHccccCCCC-eEEEEEEeC-CeeeEEEEeCCCCCCHHhHHHHH
Q psy1955 22 EVIQRPANALKELLENSLDAKST-SIQVTVKQG-GLKLLQIQDNGTGIRKEDMDIVC 76 (512)
Q Consensus 22 ~~i~~~~~~v~eLv~Ns~dA~a~-~i~i~~~~~-~~~~i~v~DnG~Gi~~~~~~~~~ 76 (512)
++-++..=.+.||||||....|+ .|.|..... ....+.|.+.-.+=+..+++.+.
T Consensus 59 evrhsvgYl~NELiENAVKfra~geIvieasl~s~~f~~kvsN~vd~~t~~~f~~ll 115 (184)
T COG5381 59 EVRHSVGYLANELIENAVKFRATGEIVIEASLYSHKFIFKVSNIVDLPTTIDFENLL 115 (184)
T ss_pred HHhhhHHHHHHHHHHhhhcccCCCcEEEEEEeccceEEEEecccCCCccHHHHHHHH
Confidence 34567778899999999998876 455555432 23456777766666666666554
No 195
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=29.75 E-value=1.4e+02 Score=25.77 Aligned_cols=60 Identities=15% Similarity=0.241 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCc-eeeEeecCCCCCCCcchhhhhhhccccC
Q psy1955 287 TIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGG-LKLLQIQDNGTGIRKEDMDIVCERFTTS 352 (512)
Q Consensus 287 ~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~-~~~i~v~Dng~gi~~~~l~~~~~~~~TS 352 (512)
.+...+.+++.|++...-.. ..... |.|.....+ .-.+.|.|+|.|+++ ......+..++
T Consensus 39 ~l~~~l~eli~Nai~h~~~~--~~~~~--I~v~~~~~~~~~~i~I~D~G~gi~~--~~~~~~~~~~~ 99 (137)
T TIGR01925 39 DIKTAVSEAVTNAIIHGYEE--NCEGV--VYISATIEDHEVYITVRDEGIGIEN--LEEAREPLYTS 99 (137)
T ss_pred HHHHHHHHHHHHHHHhccCC--CCCcE--EEEEEEEeCCEEEEEEEEcCCCcCc--hhHhhCCCccc
Confidence 34455777777777432110 00111 333333222 236788999999973 33444443333
No 196
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=26.65 E-value=1.5e+02 Score=26.97 Aligned_cols=56 Identities=7% Similarity=0.064 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCceeeEeecCCCCCCCcchhhhhh
Q psy1955 288 IIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVC 346 (512)
Q Consensus 288 I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~~~ 346 (512)
+.-.+.+++.|++..+.... ....+.|.+.... +.-.+.|.|+|.|+++..+....
T Consensus 43 l~lav~Ea~~Nai~ha~~~~--~~~~I~I~~~~~~-~~l~i~V~D~G~gfd~~~~~~~~ 98 (159)
T TIGR01924 43 LKIAVSEACTNAVKHAYKEG--ENGEIGISFHIYE-DRLEIIVSDQGDSFDMDTFKQSL 98 (159)
T ss_pred HHHHHHHHHHHHHHhccCCC--CCCeEEEEEEEeC-CEEEEEEEEcccccCchhhcccc
Confidence 44456677777665542110 0111223333332 23368899999999987766433
No 197
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=24.98 E-value=42 Score=34.97 Aligned_cols=62 Identities=24% Similarity=0.475 Sum_probs=46.0
Q ss_pred HHHHHHccccCCCCeEEEEEEeCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCCcchhhhhhhccc
Q psy1955 31 LKELLENSLDAKSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFRGEALASISHVA 110 (512)
Q Consensus 31 v~eLv~Ns~dA~a~~i~i~~~~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~rGeaL~si~~~s 110 (512)
..|||.-|+|+||++|.|-+-... -.|-|.||- ..+.-+|+..- -..+|+-|-.|..|+++.
T Consensus 114 tGeLI~~Ald~Ga~~IiiGiGGSA-----TnDgG~Gml----~ALG~~f~d~~---------g~~i~~gG~~L~~l~~id 175 (378)
T COG1929 114 TGELIKHALDAGAKHIIIGIGGSA-----TNDGGAGML----QALGAQFLDAD---------GNDLGFGGGSLANLASID 175 (378)
T ss_pred HHHHHHHHHhCCCcEEEEeccccc-----cCCchHHHH----HHhCchhhhcc---------CCCccccchhhhhhhhcc
Confidence 799999999999999999884332 357788885 45555555321 356889999998888773
No 198
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=24.35 E-value=64 Score=21.48 Aligned_cols=21 Identities=19% Similarity=0.593 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHhhcCCCeE
Q psy1955 440 EEYNKIADVVSRYAVHNPHVG 460 (512)
Q Consensus 440 ~e~~~i~~~l~~yaL~~p~v~ 460 (512)
+|+.+.+.+-++|..+||+++
T Consensus 1 kE~dRAR~IyeR~v~~hp~~k 21 (32)
T PF02184_consen 1 KEFDRARSIYERFVLVHPEVK 21 (32)
T ss_pred ChHHHHHHHHHHHHHhCCCch
Confidence 367888999999999999874
No 199
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=23.36 E-value=79 Score=34.30 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=13.4
Q ss_pred eeEeecCCCCCCCcc
Q psy1955 326 KLLQIQDNGTGIRKE 340 (512)
Q Consensus 326 ~~i~v~Dng~gi~~~ 340 (512)
-.+.|+|||-|++++
T Consensus 493 l~i~VeDng~li~p~ 507 (557)
T COG3275 493 LRIEVEDNGGLIQPD 507 (557)
T ss_pred EEEEEecCCCCcCCC
Confidence 378999999999997
No 200
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=23.27 E-value=2.7e+02 Score=29.97 Aligned_cols=31 Identities=29% Similarity=0.552 Sum_probs=21.4
Q ss_pred EEEEEccC-ceeeEeecCCCCCCCcchhhhhh
Q psy1955 316 IQVTVKQG-GLKLLQIQDNGTGIRKEDMDIVC 346 (512)
Q Consensus 316 i~i~~~~~-~~~~i~v~Dng~gi~~~~l~~~~ 346 (512)
|+|..... +.-.+++.|||.||++......-
T Consensus 376 I~i~~~~~~~~i~i~i~Dng~g~~~~~~~~~~ 407 (456)
T COG2972 376 IAISAKKQDDVIQISISDNGPGIDEEKLEGLS 407 (456)
T ss_pred EEEEEEEcCCEEEEEEeeCCCCCChhHHHHHH
Confidence 55555544 33467889999999987766543
No 201
>PRK10547 chemotaxis protein CheA; Provisional
Probab=21.31 E-value=2.3e+02 Score=32.45 Aligned_cols=17 Identities=24% Similarity=0.675 Sum_probs=14.8
Q ss_pred eEeecCCCCCCCcchhh
Q psy1955 327 LLQIQDNGTGIRKEDMD 343 (512)
Q Consensus 327 ~i~v~Dng~gi~~~~l~ 343 (512)
.+.|.|+|.||+++++.
T Consensus 431 ~I~V~DdG~GId~e~i~ 447 (670)
T PRK10547 431 CIEVTDDGAGLNRERIL 447 (670)
T ss_pred EEEEEeCCCCCCHHHHH
Confidence 68999999999998765
No 202
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=20.76 E-value=2.2e+02 Score=24.01 Aligned_cols=56 Identities=14% Similarity=0.223 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCceeeEeecCCCCCCCcchhhhh
Q psy1955 287 TIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIV 345 (512)
Q Consensus 287 ~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~~ 345 (512)
.+.-.+.|++.|++..+..... ...+.|.+.....+ -.+.|.|+|.|.++......
T Consensus 31 ~~~lav~E~~~Nav~H~~~~~~--~~~v~v~~~~~~~~-l~i~v~D~G~~~d~~~~~~~ 86 (125)
T PF13581_consen 31 DLELAVSEALTNAVEHGYPGDP--DGPVDVRLEVDPDR-LRISVRDNGPGFDPEQLPQP 86 (125)
T ss_pred HHHHHHHHHHHHHHHHcCCCCC--CcEEEEEEEEcCCE-EEEEEEECCCCCChhhccCc
Confidence 4556677888888766543221 11122232233222 36799999999888765544
No 203
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=20.54 E-value=1.1e+02 Score=27.63 Aligned_cols=30 Identities=20% Similarity=0.477 Sum_probs=20.6
Q ss_pred CeEEEEEeeCCCceEEEeecCCCcceeecch
Q psy1955 255 FPFVYLSLCMDPKNVDVNVHPTKHEVHFLHE 285 (512)
Q Consensus 255 ~P~~~L~i~ipp~~iDVNvhP~K~eV~f~~~ 285 (512)
-||++++=. +-..||+.+..||.+|.|.-.
T Consensus 57 LPFIlV~T~-~~a~I~ceiS~D~~~~~F~Fn 86 (142)
T PF08781_consen 57 LPFILVNTS-KKAVIECEISEDKSEYHFDFN 86 (142)
T ss_dssp SS-EEEEEE-SS--EEEEE-TTSSEEEEEES
T ss_pred cCEEEEEec-CCcEEEEEEcCCccEEEEEcC
Confidence 588775543 667999999999999999754
No 204
>KOG0787|consensus
Probab=20.54 E-value=3e+02 Score=29.08 Aligned_cols=123 Identities=19% Similarity=0.280 Sum_probs=64.0
Q ss_pred EeCc--hHHHHHHHHhhc--CCCCCCeEEEEEeeCCCceEEEeecCCCcceeecchhhHHHHHHHHHHHHhcCC----CC
Q psy1955 234 INNP--IKRMIEQVYSIY--LPKGSFPFVYLSLCMDPKNVDVNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGS----NT 305 (512)
Q Consensus 234 VNgR--i~k~I~~~Y~~~--l~~~~~P~~~L~i~ipp~~iDVNvhP~K~eV~f~~~~~I~~~I~~~l~~~l~~~----~~ 305 (512)
|+-| +++.|..+|... +....| +..| .+-++=|++++-= +.-...+.-.+-|.++|++.|+ ..
T Consensus 212 I~~~c~v~~vi~~a~e~ar~lCd~yy------~~sP--el~i~~~~a~~~~-vyvPshL~ymlfElfKNamrATve~h~~ 282 (414)
T KOG0787|consen 212 IDPRCSVKKVIKDASENARFLCDQYY------LNSP--ELIIEGHNALSFT-VYVPSHLYYMLFELFKNAMRATVEHHGD 282 (414)
T ss_pred eCCCCCHHHHHHHHHHHHHHHHHHhc------cCCC--eeEecCcccccCc-cccchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4444 888888887653 222211 3332 4445555444322 2234445555555555555542 11
Q ss_pred cceeecceeeEEEEEccCcee-eEeecCCCCCCCcchhhhhhhccccCCcccccccc---ccccccc
Q psy1955 306 SRVFYTQSTSIQVTVKQGGLK-LLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLN---SISTFGF 368 (512)
Q Consensus 306 ~r~~~~q~~~i~i~~~~~~~~-~i~v~Dng~gi~~~~l~~~~~~~~TSKi~~~~dl~---~~~t~Gf 368 (512)
.... ...|+|.+-.+.-+ .+.++|.|=||..++..++..=+.+..=..-.|-. .+.-|||
T Consensus 283 ~~~~---~ppI~V~V~~gdeDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d~~~~~plaGfG~ 346 (414)
T KOG0787|consen 283 DGDE---LPPIKVTVAKGDEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSSDNNRTAPLAGFGF 346 (414)
T ss_pred CCCC---CCCeEEEEecCCcceEEEEecCCCCcChhHHHHHHhhhcccCCCCCCCCCCcCccccccc
Confidence 1111 11255555544333 57899999999999999987664433222222222 3556666
Done!