Query psy1955
Match_columns 512
No_of_seqs 346 out of 2762
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 20:33:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1955.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1955hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3na3_A DNA mismatch repair pro 100.0 7.5E-69 2.5E-73 548.4 25.3 305 1-313 2-348 (348)
2 3h4l_A DNA mismatch repair pro 100.0 7.1E-63 2.4E-67 508.6 21.5 292 2-304 2-362 (367)
3 1h7s_A PMS1 protein homolog 2; 100.0 2.1E-58 7.3E-63 476.9 22.5 290 3-301 11-364 (365)
4 1b63_A MUTL; DNA mismatch repa 100.0 1.4E-56 4.6E-61 459.3 26.9 283 7-300 5-332 (333)
5 3na3_A DNA mismatch repair pro 100.0 7.2E-39 2.5E-43 327.1 19.3 209 288-505 29-237 (348)
6 3h4l_A DNA mismatch repair pro 100.0 5.2E-37 1.8E-41 316.0 17.2 204 288-502 26-234 (367)
7 1h7s_A PMS1 protein homolog 2; 100.0 2.3E-32 7.9E-37 282.3 17.4 208 287-504 34-246 (365)
8 1b63_A MUTL; DNA mismatch repa 100.0 3.1E-31 1.1E-35 271.3 17.9 209 287-504 24-233 (333)
9 3fv5_A DNA topoisomerase 4 sub 99.9 2E-23 6.9E-28 198.2 11.4 157 289-468 19-193 (201)
10 1s16_A Topoisomerase IV subuni 99.9 1.9E-21 6.5E-26 202.1 18.5 277 4-301 7-359 (390)
11 1ei1_A DNA gyrase B, GYRB; ATP 99.9 1.5E-21 5E-26 202.9 15.6 253 5-279 7-338 (391)
12 3fv5_A DNA topoisomerase 4 sub 99.8 2E-21 6.9E-26 184.4 6.9 145 19-177 8-191 (201)
13 3cwv_A DNA gyrase, B subunit, 99.8 1.2E-19 4.2E-24 187.1 17.9 252 25-302 29-346 (369)
14 1y4s_A Chaperone protein HTPG; 99.8 1.8E-19 6.2E-24 194.0 10.5 254 23-298 24-354 (559)
15 1s16_A Topoisomerase IV subuni 99.8 7.7E-19 2.6E-23 182.5 14.5 190 289-503 33-243 (390)
16 2ioq_A Chaperone protein HTPG; 99.8 5.5E-20 1.9E-24 200.4 3.6 267 7-298 13-354 (624)
17 1ei1_A DNA gyrase B, GYRB; ATP 99.8 2.5E-18 8.4E-23 178.7 14.8 192 287-503 34-245 (391)
18 3cwv_A DNA gyrase, B subunit, 99.7 1.1E-17 3.6E-22 172.6 14.3 190 286-504 29-234 (369)
19 3t0h_A Heat shock protein HSP 99.7 9.7E-18 3.3E-22 161.7 6.1 153 291-457 36-209 (228)
20 1kij_A DNA gyrase subunit B; t 99.7 6.2E-17 2.1E-21 168.4 10.6 253 5-279 6-337 (390)
21 2o1u_A Endoplasmin; GRP94, HSP 99.7 1.4E-17 4.6E-22 182.2 4.5 253 23-298 42-378 (666)
22 3t0h_A Heat shock protein HSP 99.7 5.4E-18 1.8E-22 163.5 0.3 118 7-131 18-157 (228)
23 4duh_A DNA gyrase subunit B; s 99.7 4E-16 1.4E-20 149.7 12.8 160 286-467 34-209 (220)
24 3o0i_A HSP90AA1 protein; HSP90 99.7 7.7E-17 2.6E-21 157.1 6.7 157 291-458 64-238 (256)
25 3o0i_A HSP90AA1 protein; HSP90 99.6 2.4E-17 8.3E-22 160.7 1.9 117 7-131 46-185 (256)
26 1zxm_A TOPO IIA ATPase, DNA to 99.6 1.6E-15 5.5E-20 157.6 13.8 103 24-131 50-167 (400)
27 2ior_A Chaperone protein HTPG; 99.6 1.7E-16 5.7E-21 154.3 3.5 117 5-127 31-174 (235)
28 1zxm_A TOPO IIA ATPase, DNA to 99.6 3.6E-15 1.2E-19 155.0 12.3 166 285-465 50-231 (400)
29 1kij_A DNA gyrase subunit B; t 99.6 8.2E-15 2.8E-19 152.4 14.0 196 287-503 32-244 (390)
30 4duh_A DNA gyrase subunit B; s 99.6 9.4E-16 3.2E-20 147.0 6.3 159 6-177 9-208 (220)
31 4emv_A DNA topoisomerase IV, B 99.6 1.3E-14 4.6E-19 139.4 12.6 159 286-467 39-215 (226)
32 2gqp_A Endoplasmin; GRP94, HSP 99.6 2.1E-15 7.3E-20 146.5 5.5 113 6-127 17-159 (236)
33 1y4s_A Chaperone protein HTPG; 99.5 1.3E-14 4.6E-19 156.3 12.1 202 290-505 30-269 (559)
34 2ioq_A Chaperone protein HTPG; 99.5 9.1E-15 3.1E-19 159.4 10.2 201 290-504 30-268 (624)
35 3ttz_A DNA gyrase subunit B; p 99.5 2E-13 6.7E-18 128.9 11.6 147 286-467 30-182 (198)
36 1yc1_A HSP 86, heat shock prot 99.5 1.4E-14 4.7E-19 142.8 3.3 105 22-127 64-190 (264)
37 2ior_A Chaperone protein HTPG; 99.5 1.4E-13 4.6E-18 133.8 9.4 158 290-457 50-227 (235)
38 3lnu_A Topoisomerase IV subuni 99.4 2E-12 6.8E-17 134.1 17.0 274 6-301 28-377 (408)
39 2wer_A ATP-dependent molecular 99.4 8.6E-14 2.9E-18 133.9 5.2 100 23-127 23-148 (220)
40 2o1u_A Endoplasmin; GRP94, HSP 99.4 9.5E-13 3.3E-17 144.0 10.9 193 291-504 49-289 (666)
41 4emv_A DNA topoisomerase IV, B 99.4 5.5E-13 1.9E-17 128.2 7.4 117 7-131 16-150 (226)
42 3ttz_A DNA gyrase subunit B; p 99.3 9.2E-13 3.1E-17 124.4 5.2 126 25-177 30-181 (198)
43 3lnu_A Topoisomerase IV subuni 99.3 1.5E-11 5E-16 127.7 13.3 176 289-489 52-246 (408)
44 1qy5_A Endoplasmin; GRP94, NEC 99.2 1.7E-12 6E-17 127.9 3.2 112 6-127 13-155 (269)
45 2gqp_A Endoplasmin; GRP94, HSP 99.2 1.1E-11 3.8E-16 120.3 8.7 153 290-455 35-210 (236)
46 2zbk_B Type 2 DNA topoisomeras 99.2 1.6E-11 5.6E-16 132.0 10.4 201 281-501 24-246 (530)
47 2q2e_B Type 2 DNA topoisomeras 99.2 6.4E-12 2.2E-16 137.1 6.1 199 283-501 33-251 (621)
48 1mu5_A Type II DNA topoisomera 99.2 2.2E-10 7.4E-15 121.8 15.8 166 285-473 30-216 (471)
49 2wer_A ATP-dependent molecular 99.1 1.2E-10 4.2E-15 111.8 10.4 158 290-461 29-207 (220)
50 1yc1_A HSP 86, heat shock prot 99.1 1E-10 3.5E-15 115.1 9.2 154 291-455 72-241 (264)
51 1mu5_A Type II DNA topoisomera 99.1 1.3E-10 4.6E-15 123.4 10.3 97 25-127 31-143 (471)
52 3peh_A Endoplasmin homolog; st 99.1 4.7E-11 1.6E-15 117.6 5.4 103 23-127 43-169 (281)
53 2cg9_A ATP-dependent molecular 99.1 1.2E-10 4E-15 127.7 8.9 108 14-127 15-148 (677)
54 2zbk_B Type 2 DNA topoisomeras 99.1 1.9E-10 6.4E-15 123.8 9.5 97 25-127 30-142 (530)
55 3nmq_A Heat shock protein HSP 99.1 5.7E-11 2E-15 114.6 4.1 111 14-127 28-161 (239)
56 2q2e_B Type 2 DNA topoisomeras 99.0 2.2E-10 7.7E-15 125.0 7.9 100 25-130 36-149 (621)
57 1qy5_A Endoplasmin; GRP94, NEC 98.9 1E-09 3.5E-14 108.1 6.8 160 291-464 32-216 (269)
58 2cg9_A ATP-dependent molecular 98.8 1.5E-08 5.1E-13 111.1 11.3 154 291-461 30-207 (677)
59 3ied_A Heat shock protein; HSP 98.6 3.3E-08 1.1E-12 95.5 4.9 80 45-127 120-205 (272)
60 3peh_A Endoplasmin homolog; st 98.6 1.3E-07 4.5E-12 93.0 8.8 160 292-465 51-232 (281)
61 1pvg_A DNA topoisomerase II; G 98.5 8.7E-08 3E-12 100.0 6.6 102 25-131 63-179 (418)
62 3nmq_A Heat shock protein HSP 98.4 1.8E-07 6E-12 90.2 5.8 151 291-455 43-212 (239)
63 1id0_A PHOQ histidine kinase; 98.4 3.8E-07 1.3E-11 80.7 7.3 84 25-118 43-132 (152)
64 1th8_A Anti-sigma F factor; SP 98.4 8.9E-07 3E-11 78.2 8.2 82 25-118 38-126 (145)
65 1bxd_A ENVZ(290-450), protein 98.3 4.6E-07 1.6E-11 81.3 6.1 85 26-118 47-137 (161)
66 2c2a_A Sensor histidine kinase 98.3 6.8E-07 2.3E-11 86.5 7.1 88 26-119 138-236 (258)
67 1pvg_A DNA topoisomerase II; G 98.3 6E-06 2E-10 86.1 14.1 166 286-465 63-244 (418)
68 1ysr_A Sensor-type histidine k 98.3 1.8E-06 6.1E-11 76.3 8.3 85 25-118 45-136 (150)
69 1r62_A Nitrogen regulation pro 98.3 1.1E-06 3.7E-11 78.1 6.4 81 26-118 48-147 (160)
70 1i58_A Chemotaxis protein CHEA 98.2 5.9E-07 2E-11 82.9 4.6 86 26-118 47-176 (189)
71 2q8g_A [pyruvate dehydrogenase 98.2 1.2E-06 4E-11 91.4 6.9 94 25-118 242-350 (407)
72 2e0a_A Pyruvate dehydrogenase 98.2 1.3E-06 4.5E-11 90.6 7.1 93 26-118 230-337 (394)
73 4ew8_A Sensor protein DIVL; si 98.2 2.6E-06 8.8E-11 82.5 8.0 81 26-118 155-243 (268)
74 3d36_A Sporulation kinase B; G 98.2 2.7E-06 9.2E-11 80.9 8.0 88 26-127 123-218 (244)
75 1y8o_A [pyruvate dehydrogenase 98.2 1.3E-06 4.6E-11 91.4 5.4 93 26-118 253-361 (419)
76 3jz3_A Sensor protein QSEC; he 98.2 1.3E-06 4.4E-11 81.9 4.8 86 27-127 118-210 (222)
77 3a0y_A Sensor protein; ATP-LID 98.2 1.2E-06 4.2E-11 77.1 4.3 59 25-83 46-107 (152)
78 1gkz_A [3-methyl-2-oxobutanoat 98.1 1.1E-06 3.6E-11 91.1 4.2 94 25-118 237-360 (388)
79 1b3q_A Protein (chemotaxis pro 98.1 1.5E-06 5.2E-11 89.9 5.1 86 26-118 106-235 (379)
80 2btz_A Pyruvate dehydrogenase 98.1 2.2E-06 7.5E-11 88.9 6.4 93 25-118 230-337 (394)
81 3sl2_A Sensor histidine kinase 98.1 4.3E-06 1.5E-10 76.1 6.1 89 25-119 42-140 (177)
82 3ehg_A Sensor kinase (YOCF pro 98.0 1.2E-05 4.2E-10 69.3 7.4 47 26-72 40-88 (128)
83 3a0r_A Sensor protein; four he 98.0 3.5E-06 1.2E-10 84.6 4.3 58 26-83 244-304 (349)
84 3zxo_A Redox sensor histidine 97.9 6.1E-05 2.1E-09 64.5 10.3 46 26-71 43-89 (129)
85 3ehh_A Sensor kinase (YOCF pro 97.8 6E-05 2.1E-09 70.5 8.8 46 27-72 131-178 (218)
86 3ied_A Heat shock protein; HSP 97.7 5.6E-05 1.9E-09 73.1 7.3 125 315-454 120-261 (272)
87 3zxq_A Hypoxia sensor histidin 97.7 8.6E-05 2.9E-09 63.1 7.6 46 25-71 38-85 (124)
88 4fpp_A Phosphotransferase; fou 97.6 9.7E-05 3.3E-09 71.3 7.7 80 26-117 146-235 (247)
89 4gfh_A DNA topoisomerase 2; to 96.6 0.0048 1.6E-07 71.9 9.6 86 26-116 59-160 (1177)
90 1ixm_A SPO0B, protein (sporula 95.6 0.0056 1.9E-07 57.0 3.0 54 28-81 107-171 (192)
91 3ke6_A Protein RV1364C/MT1410; 95.5 0.017 5.9E-07 59.7 6.4 72 23-117 294-373 (399)
92 1id0_A PHOQ histidine kinase; 94.6 0.098 3.3E-06 45.2 7.9 62 283-353 40-102 (152)
93 1ysr_A Sensor-type histidine k 94.5 0.1 3.4E-06 45.1 7.8 65 280-352 39-104 (150)
94 3a0y_A Sensor protein; ATP-LID 94.5 0.096 3.3E-06 45.1 7.6 64 283-353 43-107 (152)
95 3jz3_A Sensor protein QSEC; he 94.4 0.08 2.7E-06 48.6 7.4 61 283-353 113-173 (222)
96 3sl2_A Sensor histidine kinase 94.4 0.4 1.4E-05 42.6 11.8 66 283-353 39-105 (177)
97 1bxd_A ENVZ(290-450), protein 94.0 0.11 3.8E-06 45.5 6.9 94 238-354 12-106 (161)
98 1r62_A Nitrogen regulation pro 93.6 0.13 4.6E-06 44.5 6.9 64 283-353 44-119 (160)
99 3d36_A Sporulation kinase B; G 93.4 0.2 6.8E-06 46.6 8.1 64 283-353 119-183 (244)
100 2c2a_A Sensor histidine kinase 93.2 0.27 9.3E-06 46.5 8.8 67 283-353 134-201 (258)
101 4ew8_A Sensor protein DIVL; si 93.1 0.2 6.7E-06 47.6 7.7 64 283-353 151-215 (268)
102 3a0r_A Sensor protein; four he 92.7 0.15 5.2E-06 50.3 6.4 64 283-353 240-304 (349)
103 2q8g_A [pyruvate dehydrogenase 92.4 0.44 1.5E-05 48.9 9.7 74 281-354 237-311 (407)
104 1i58_A Chemotaxis protein CHEA 92.4 0.18 6E-06 45.5 5.9 57 286-342 46-108 (189)
105 2e0a_A Pyruvate dehydrogenase 92.2 0.23 8E-06 50.8 7.2 73 282-354 225-298 (394)
106 3ehg_A Sensor kinase (YOCF pro 91.5 0.2 6.7E-06 42.3 4.8 52 283-342 36-88 (128)
107 1gkz_A [3-methyl-2-oxobutanoat 91.4 0.16 5.5E-06 51.8 4.9 72 283-354 234-307 (388)
108 2btz_A Pyruvate dehydrogenase 91.0 0.34 1.2E-05 49.5 6.9 72 283-354 227-299 (394)
109 3zxq_A Hypoxia sensor histidin 90.9 0.6 2E-05 38.7 7.3 64 270-341 22-85 (124)
110 4gfh_A DNA topoisomerase 2; to 90.4 1.4 4.8E-05 51.5 11.9 123 287-421 59-199 (1177)
111 1y8o_A [pyruvate dehydrogenase 89.6 0.39 1.3E-05 49.6 6.0 73 282-354 248-322 (419)
112 1b3q_A Protein (chemotaxis pro 88.6 1.1 3.7E-05 45.7 8.3 57 286-342 105-167 (379)
113 3zxo_A Redox sensor histidine 87.8 0.94 3.2E-05 37.6 6.2 83 238-341 7-89 (129)
114 3ehh_A Sensor kinase (YOCF pro 86.8 0.68 2.3E-05 42.3 5.1 52 283-342 126-178 (218)
115 1th8_A Anti-sigma F factor; SP 83.8 1.5 5.1E-05 37.4 5.5 64 284-353 36-100 (145)
116 4fpp_A Phosphotransferase; fou 67.2 11 0.00039 35.2 7.1 60 287-353 146-208 (247)
117 2w0p_A Filamin-A; alternative 29.2 54 0.0018 25.7 4.1 30 38-67 28-57 (94)
118 2bp3_A Filamin A; structural p 24.9 65 0.0022 25.3 3.9 31 37-67 30-60 (97)
119 2ee6_A Filamin-B; beta-sandwic 24.3 59 0.002 26.1 3.5 31 37-67 35-65 (105)
120 3rgh_A Filamin-A; cell adhesio 21.9 60 0.002 25.9 3.0 30 37-66 32-63 (100)
121 2k9u_A Gamma filamin; cytoskel 21.5 67 0.0023 26.4 3.4 30 37-66 42-71 (119)
No 1
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=100.00 E-value=7.5e-69 Score=548.42 Aligned_cols=305 Identities=57% Similarity=0.868 Sum_probs=240.6
Q ss_pred CC-CCccccccChHHHHHHhcCCcccCHHHHHHHHHHccccCCCCeEEEEEEeCCeeeEEEEeCCCCCCHHhHHHHHhhc
Q psy1955 1 MD-QPPKIKKLDETVVNRIAAGEVIQRPANALKELLENSLDAKSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERF 79 (512)
Q Consensus 1 ~~-~~~~i~~l~~~~~~~i~s~~~i~~~~~~v~eLv~Ns~dA~a~~i~i~~~~~~~~~i~v~DnG~Gi~~~~~~~~~~~~ 79 (512)
|+ |+++|++||++++++|+||++|++|.++|+|||+||+||+|+.|.|.++.++...|+|.|||+||++++++.+|++|
T Consensus 2 ~~~m~~~I~~L~~~~~~~Iaagevi~~~~~vv~eLv~NAidA~a~~I~I~i~~~~~~~I~V~DnG~GI~~~~l~~~~~~~ 81 (348)
T 3na3_A 2 MSFVAGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTGIRKEDLDIVCERF 81 (348)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTCSEEEEEEEGGGTSEEEEEECSCCCCGGGGGTTTSTT
T ss_pred CCccccccccCCHHHHHhhcccCcccCHHHHHHHHHHHHHHcCCCEEEEEEEeCCEEEEEEEECCcCcChHHhhhhhccc
Confidence 66 88889999999999999999999999999999999999999999999987777779999999999999999999999
Q ss_pred ccCCCCCccccccccccCCcchhhhhhhccceEEEEEecCCCCceEEEEeee---------------------hhhhhhh
Q psy1955 80 TTSKLTQFEDLNSISTFGFRGEALASISHVAHLTIITKTKTSPCAYRWCTYL---------------------ADLMALA 138 (512)
Q Consensus 80 ~tsK~~~~~d~~~~~~~G~rGeaL~si~~~s~l~i~S~~~~~~~~~~~~~~~---------------------~dl~~~~ 138 (512)
+|||+.+++|+..+.++|||||||+||+++|+|+|+||++++..+|++ .|. +||
T Consensus 82 ~tsK~~~~~dl~~i~s~GfrGeaL~Si~avs~l~v~sr~~~~~~~~~~-~~~~G~~~~~~~~~~~~~GTtV~v~~L---- 156 (348)
T 3na3_A 82 TTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYRA-SYSDGKLKAPPKPCAGNQGTQITVEDL---- 156 (348)
T ss_dssp CCSSCCCC---------CCTTCHHHHHHHSSEEEEEEECTTCSSEEEE-EEETTEESSCCEEECCCSEEEEEEEST----
T ss_pred cccccCcchhhhccccCCcCChHHHHhhcccEEEEEEEECCCCceEEE-EEeCCEEeeeeeEecCCCCcEEEECcc----
Confidence 999999999999999999999999999999999999999998889988 554 778
Q ss_pred hcccchhhhHhhhcCCcHHHHHhhhhhc------ccCeEEEe--cCCc-ceeecC-ccChHHHHH----HHHhhcceEee
Q psy1955 139 LMEMSQYLQRDKEQIGDKEEKQWYRTVE------HTLVPLMK--SQYQ-PSEKIV-ERACLLEIA----SLNNLELLSVE 204 (512)
Q Consensus 139 F~n~Pv~~~Rrk~lks~~~E~~ki~~lv------~p~Vs~~~--~~~~-~~~~t~-~~s~~~~i~----~~~~~~l~~i~ 204 (512)
|+|+|+ |||+|++.+.|+.+|.+++ +|+|+|.. +++. ..++++ .+++.++|. ..++++|++++
T Consensus 157 F~n~P~---R~k~lk~~~~e~~~i~~~l~~~Al~~p~v~f~l~~~g~~~~~~~~~~~~~~~~~i~~i~G~~~~~~l~~v~ 233 (348)
T 3na3_A 157 FYNIAT---RRKALKNPSEEYGKILEVVGRYSVHNAGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIG 233 (348)
T ss_dssp TTTCHH---HHHTSCCHHHHHHHHHHHHHHHHHHCTTCEEEEEETTCSSCSEECCTTCCHHHHHHHHHCHHHHTTEEEEE
T ss_pred cccCch---hhhhccccHHHHHHHHHHHHHHHhhCCCeEEEEEECCEEEEEeecCCCCCHHHHHHHHhChHhHhhcEEEE
Confidence 999999 9999999999999999998 99996654 4443 457777 778999888 77889999999
Q ss_pred ecCCcccEEEEEEEecCcccCCCceEEEEEeCc------hHHHHHHHHhhcCCCCCCeEEEEEeeCCCceEEEeecCCCc
Q psy1955 205 GTDDAFQLKVTGWITNVNFSTKKMTFLLFINNP------IKRMIEQVYSIYLPKGSFPFVYLSLCMDPKNVDVNVHPTKH 278 (512)
Q Consensus 205 ~~~~~~~~~v~G~is~p~~~~~r~~q~lfVNgR------i~k~I~~~Y~~~l~~~~~P~~~L~i~ipp~~iDVNvhP~K~ 278 (512)
.+.+...++++||+|.|.++.++..||+||||| |.++|+++|+.++|+++||+++|+|+|||+.|||||||+|+
T Consensus 234 ~~~~~~~~~i~G~is~p~~~~~~~~q~~fVNgR~v~~~~l~~ai~~~y~~~l~~~~~P~~~L~l~~~p~~vDVNvhP~K~ 313 (348)
T 3na3_A 234 CEDKTLAFKMNGYISNANYSVKKCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKH 313 (348)
T ss_dssp EEEGGGTEEEEEEEECSSCCBSSCEEEEEETTEECCCTTHHHHHHHHHHTTSCTTCBCEEEEEEECC-------------
T ss_pred eecCCccEEEEEEEeCCccCCCcccEEEEECCeEecCHHHHHHHHHHHHHhCcCCCceEEEEEEEeChhheeeeeCCCcC
Confidence 876644699999999999887788999999999 99999999999999999999999999999999999999999
Q ss_pred ceeecchhhHHHHHHHHHHHHhcCCCCcceeecce
Q psy1955 279 EVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQS 313 (512)
Q Consensus 279 eV~f~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~ 313 (512)
||+|.+|++|++.|+++|+++|...+++|+|+.|+
T Consensus 314 eV~f~~e~~i~~~i~~~v~~~l~~~~~sr~f~~~~ 348 (348)
T 3na3_A 314 EVHFLHEESILERVQQHIESKLLGSNSSRMYFTQT 348 (348)
T ss_dssp ---------CTHHHHHHHHHHHC------------
T ss_pred EEEEcCHHHHHHHHHHHHHHHHhcCCCcceeeccC
Confidence 99999999999999999999999999999998774
No 2
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-63 Score=508.59 Aligned_cols=292 Identities=27% Similarity=0.422 Sum_probs=244.0
Q ss_pred CCCccccccChHHHHHHhcCCcccCHHHHHHHHHHccccCCCCeEEEEEEeCCeeeEEEEeCCCCCCHHhHHHHHhhccc
Q psy1955 2 DQPPKIKKLDETVVNRIAAGEVIQRPANALKELLENSLDAKSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTT 81 (512)
Q Consensus 2 ~~~~~i~~l~~~~~~~i~s~~~i~~~~~~v~eLv~Ns~dA~a~~i~i~~~~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~t 81 (512)
+|+. |++||++++++|+||++|++|.++|+|||+||+||+|+.|.|.+..++...|+|.|||+||++++++.+|++|+|
T Consensus 2 ~M~~-I~~L~~~~~~~I~agevi~~~~~vv~eLv~NaiDA~a~~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~t 80 (367)
T 3h4l_A 2 SMTQ-IHQINDIDVHRITSGQVITDLTTAVKELVDNSIDANANQIEIIFKDYGLESIECSDNGDGIDPSNYEFLALKHYT 80 (367)
T ss_dssp ------------CTHHHHHHHHCCSHHHHHHHHHHHHHHTTCSEEEEEEETTTTSEEEEEECSCCCCGGGTTTTTCCEEC
T ss_pred CCCc-ceeCCHHHHHHhcCCCcccCHHHHHHHHHHHHHHCCCCEEEEEEEeCCEEEEEEEECCCCcChhHhccceecccc
Confidence 3544 999999999999999999999999999999999999999999998777778999999999999999999999999
Q ss_pred CCCCCccccccccccCCcchhhhhhhccceEEEEEecCCCCceEEEEeee---------------------hhhhhhhhc
Q psy1955 82 SKLTQFEDLNSISTFGFRGEALASISHVAHLTIITKTKTSPCAYRWCTYL---------------------ADLMALALM 140 (512)
Q Consensus 82 sK~~~~~d~~~~~~~G~rGeaL~si~~~s~l~i~S~~~~~~~~~~~~~~~---------------------~dl~~~~F~ 140 (512)
||+.+++|+..+.++|||||||+||+++|+|+|+||+++ +.||++ .|. +|| |+
T Consensus 81 sK~~~~~Dl~~i~t~GfrGeaL~Si~avS~l~V~sr~~~-~~~~~~-~~~~~G~~~~~~~~~~~~GTtV~v~~L----F~ 154 (367)
T 3h4l_A 81 SKIAKFQDVAKVQTLGFRGEALSSLCGIAKLSVITTTSP-PKADKL-EYDMVGHITSKTTTSRNKGTTVLVSQL----FH 154 (367)
T ss_dssp ---------CCCCEEEETTHHHHHHHHSSEEEEEEESST-TCEEEE-EECTTCCEEEEEEECCSSEEEEEEEST----TT
T ss_pred CcCCchhhhhhhhccCccchHHHHhhccCEEEEEEEECC-CCEEEE-EEcCCCcEEeeccccCCCCeEEEEchh----hc
Confidence 999999999999999999999999999999999999988 788888 653 778 99
Q ss_pred ccchhhhHhh-hcCCcHHHHHhhhhhc------ccCeEEEec-----CCc-ceeecC-ccChHHHHH----HHHhhcceE
Q psy1955 141 EMSQYLQRDK-EQIGDKEEKQWYRTVE------HTLVPLMKS-----QYQ-PSEKIV-ERACLLEIA----SLNNLELLS 202 (512)
Q Consensus 141 n~Pv~~~Rrk-~lks~~~E~~ki~~lv------~p~Vs~~~~-----~~~-~~~~t~-~~s~~~~i~----~~~~~~l~~ 202 (512)
|+|+ ||| ++++.+.|+.+|.+++ +|+|+|... ++. ..++++ .+++.++|. ..++.+|++
T Consensus 155 n~P~---R~k~flk~~~~e~~~i~~~l~~~Al~~p~v~~~l~~~~~~~~~~~~~~t~~~~~~~~~i~~i~G~~~~~~l~~ 231 (367)
T 3h4l_A 155 NLPV---RQKEFSKTFKRQFTKCLTVIQGYAIINAAIKFSVWNITPKGKKNLILSTMRNSSMRKNISSVFGAGGMRGLEE 231 (367)
T ss_dssp TCHH---HHHHHHTTHHHHHHHHHHHHHHHHHHCTTCEEEEEEECTTSCEEEEEECCSSCCHHHHHHHHHCTTTTTTEEE
T ss_pred cCch---hhhhhccchHHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCcceEEEECCCCCCHHHHHHHHhCHHHHhccEE
Confidence 9999 999 8899999999999998 999976653 222 667777 788999988 566788988
Q ss_pred eeec---------------------CCcccEEEEEEEecCccc---CCCceEEEEEeCc------hHHHHHHHHhhcCCC
Q psy1955 203 VEGT---------------------DDAFQLKVTGWITNVNFS---TKKMTFLLFINNP------IKRMIEQVYSIYLPK 252 (512)
Q Consensus 203 i~~~---------------------~~~~~~~v~G~is~p~~~---~~r~~q~lfVNgR------i~k~I~~~Y~~~l~~ 252 (512)
++.+ .....++++||+|+|.+. .+++.||+||||| |.++|+++|+.++ .
T Consensus 232 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~is~p~~~~~r~~~~~q~~fVNgR~v~~~~l~~ai~~~y~~~~-~ 310 (367)
T 3h4l_A 232 VDLVLDLNPFKNRMLGKYTDDPDFLDLDYKIRVKGYISQNSFGCGRNSKDRQFIYVNKRPVEYSTLLKCCNEVYKTFN-N 310 (367)
T ss_dssp EEEEEECGGGCCCCC------------CCEEEEEEEEECCSTTCSBSSSSSEEEEETTEEECCHHHHHHHHHHHHTTC-S
T ss_pred EecccccccccccccccccccccccccCCcEEEEEEEeCCcccccCCCCCcEEEEECCCEecCHHHHHHHHHHHHhcC-C
Confidence 8861 012369999999999863 3567899999999 9999999999986 5
Q ss_pred CCCeEEEEEeeCCCceEEEeecCCCcceeecchhhHHHHHHHHHHHHhcCCC
Q psy1955 253 GSFPFVYLSLCMDPKNVDVNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSN 304 (512)
Q Consensus 253 ~~~P~~~L~i~ipp~~iDVNvhP~K~eV~f~~~~~I~~~I~~~l~~~l~~~~ 304 (512)
++||+++|+|+|||+.|||||||+|+||+|.+|+.|++.|+++|.++|...+
T Consensus 311 ~~~P~~~L~l~~~p~~vDVNVhP~K~eV~f~~e~~i~~~i~~~l~~~~~~~~ 362 (367)
T 3h4l_A 311 VQFPAVFLNLELPMSLIDVNVTPDKRVILLHNERAVIDIFKTTLSDYYNRQE 362 (367)
T ss_dssp SCBCCEEEEEECCGGGEECCCSSSTTCCEETTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEEEcChHHcceeECCCCCEEEEcCHHHHHHHHHHHHHHHHhhcC
Confidence 8999999999999999999999999999999999999999999999997643
No 3
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=100.00 E-value=2.1e-58 Score=476.88 Aligned_cols=290 Identities=28% Similarity=0.429 Sum_probs=227.6
Q ss_pred CCccccccChHHHHHHhcCCcccCHHHHHHHHHHccccCCCCeEEEEEEeCCeeeEEEEeCCCCCCHHhHHHHHhhcccC
Q psy1955 3 QPPKIKKLDETVVNRIAAGEVIQRPANALKELLENSLDAKSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTS 82 (512)
Q Consensus 3 ~~~~i~~l~~~~~~~i~s~~~i~~~~~~v~eLv~Ns~dA~a~~i~i~~~~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~ts 82 (512)
|++.|++||+.++++|+||++|.+|.++|+|||+||+||+|+.|.|.+..++...|+|.|||+||++++++.+|++|+||
T Consensus 11 ~~~~I~~L~~~~~~~i~agevi~~~~~vl~eLv~NAiDA~a~~I~I~i~~~~~~~I~V~DnG~Gi~~~~l~~~f~~~~ts 90 (365)
T 1h7s_A 11 PAKAIKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCGVEEENFEGLTLKHHTS 90 (365)
T ss_dssp ------------------CEEECCHHHHHHHHHHHHHHTTCSEEEEEEEGGGTSEEEEEECSCCCCGGGSGGGGC-----
T ss_pred cchhhccCCHHHHHHhcCCCchhhHHHHHHHHHHHHHHCCCCEEEEEEEeCCcEEEEEEECCCCcCHHHHHHHhhhcccc
Confidence 45569999999999999999999999999999999999999999999976666679999999999999999999999999
Q ss_pred CCCCccccccccccCCcchhhhhhhccceEEEEEecCCCCceEEEEeee---------------------hhhhhhhhcc
Q psy1955 83 KLTQFEDLNSISTFGFRGEALASISHVAHLTIITKTKTSPCAYRWCTYL---------------------ADLMALALME 141 (512)
Q Consensus 83 K~~~~~d~~~~~~~G~rGeaL~si~~~s~l~i~S~~~~~~~~~~~~~~~---------------------~dl~~~~F~n 141 (512)
|....+|+..+.++||||+||+|++++|+|+|.||+.++..+|++ .|. .|| |+|
T Consensus 91 K~~~~~dl~~i~s~G~rG~gl~si~~vs~v~v~t~~~~~~~~~~~-~~~~~G~~~~~~~~~~~~GT~V~v~~L----F~n 165 (365)
T 1h7s_A 91 KIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHASAKVGTRL-MFDHNGKIIQKTPYPRPRGTTVSVQQL----FST 165 (365)
T ss_dssp -----CCTTCSEEESSSSSHHHHHHHHSEEEEEEECTTCSSCEEE-EECTTSCEEEEEECCCCSEEEEEEEST----TTT
T ss_pred ccccccchhcccccCCCCchhhhhhhhccEEEEEccCCCcceEEE-EEcCCCceEeecccCCCCCcEEEEeec----ccc
Confidence 999888999999999999999999999999999999888778887 553 667 999
Q ss_pred cchhhhHhh-hcCCcHHHHHhhhhhc------ccCeEEEec--C---C-cceeecC-ccChHHHHH----HHHhhcceEe
Q psy1955 142 MSQYLQRDK-EQIGDKEEKQWYRTVE------HTLVPLMKS--Q---Y-QPSEKIV-ERACLLEIA----SLNNLELLSV 203 (512)
Q Consensus 142 ~Pv~~~Rrk-~lks~~~E~~ki~~lv------~p~Vs~~~~--~---~-~~~~~t~-~~s~~~~i~----~~~~~~l~~i 203 (512)
+|+ ||| ++++.+.|+.+|.+++ +|+|+|... + + ...++++ .+++.+++. ..++++|+++
T Consensus 166 ~P~---R~k~flk~~~~e~~~i~~~v~~~al~~p~v~f~l~~~~~~~~~~~~~~~~~~~~~~~~i~~i~G~~~~~~l~~i 242 (365)
T 1h7s_A 166 LPV---RHKEFQRNIKKEYAKMVQVLHAYCIISAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQLQSLIPF 242 (365)
T ss_dssp SHH---HHHHHHHTHHHHHHHHHHHHHHHHHHCTTCEEEEEEECTTSCEEEEEECCCCSSHHHHHHHHHCHHHHHTEEEC
T ss_pred cch---hhhhhccchHHHHHHHHHhhhhhhhcCCceEEEEEecCCCCcEEEEEEcCCCchHHHHHHHhcChHhHhceEEE
Confidence 999 999 7799999999999988 999966543 3 1 2567777 678888887 7778899998
Q ss_pred eecCC----------------cccEEEEEEEecCccc---CCCceEEEEEeCc------hHHHHHHHHhhcCCCCCCeEE
Q psy1955 204 EGTDD----------------AFQLKVTGWITNVNFS---TKKMTFLLFINNP------IKRMIEQVYSIYLPKGSFPFV 258 (512)
Q Consensus 204 ~~~~~----------------~~~~~v~G~is~p~~~---~~r~~q~lfVNgR------i~k~I~~~Y~~~l~~~~~P~~ 258 (512)
+...+ ...++++||++.|.++ .+++.||+||||| |.++|+++|+.+++. +||++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~i~~p~~~~~r~~~~~q~~fvNgR~v~~~~l~~ai~~~y~~~~~~-~~P~~ 321 (365)
T 1h7s_A 243 VQLPPSDSVCEEYGLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFFINRRPCDPAKVCRLVNEVYHMYNRH-QYPFV 321 (365)
T ss_dssp CCCCCCHHHHHHHTCCTTTTTSCCCEEEEEEECCSTTTSBSSSTTEEEEETTEEECCHHHHHHHHHHHHTTCTT-CBCCE
T ss_pred eccCCcccccccccccccccccccEEEEEEEeCcccccccCCCcceEEEECCeEecCHHHHHHHHHHHHhhCcc-CCcEE
Confidence 65431 1269999999999875 3567899999999 999999999999876 89999
Q ss_pred EEEeeCCCceEEEeecCCCcceeecchhhHHHHHHHHHHHHhc
Q psy1955 259 YLSLCMDPKNVDVNVHPTKHEVHFLHEDTIIERVQSMLEKTLL 301 (512)
Q Consensus 259 ~L~i~ipp~~iDVNvhP~K~eV~f~~~~~I~~~I~~~l~~~l~ 301 (512)
+|+|+|||..|||||||+|+||+|.+|+.|++.|+++|+++|.
T Consensus 322 ~L~l~~~p~~vDvNVhP~K~eV~f~~e~~i~~~i~~~~~~~~~ 364 (365)
T 1h7s_A 322 VLNISVDSECVDINVTPDKRQILLQEEKLLLAVLKTSLIGMFD 364 (365)
T ss_dssp EEEEECCGGGEEEC------CEEETTHHHHHHHHHHHHHHHHC
T ss_pred EEEEEeChHHcceEECCCcCEEEEcCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999985
No 4
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=100.00 E-value=1.4e-56 Score=459.28 Aligned_cols=283 Identities=33% Similarity=0.473 Sum_probs=254.0
Q ss_pred ccccChHHHHHHhcCCcccCHHHHHHHHHHccccCCCCeEEEEEEeCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCC
Q psy1955 7 IKKLDETVVNRIAAGEVIQRPANALKELLENSLDAKSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQ 86 (512)
Q Consensus 7 i~~l~~~~~~~i~s~~~i~~~~~~v~eLv~Ns~dA~a~~i~i~~~~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~ 86 (512)
|++||++++++|+||++|.+|.++|+|||+||+||+|+.|.|.++.++...|+|.|||+||++++++.+|++|+|||+.+
T Consensus 5 I~~L~~~~~~~I~agevi~~~~~~v~ELi~NaidA~a~~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~ 84 (333)
T 1b63_A 5 IQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCGIKKDELALALARHATSKIAS 84 (333)
T ss_dssp CCCCCHHHHHHHHHHHHCSSHHHHHHHHHHHHHHTTCSEEEEEEEGGGTSEEEEEECSCCCCGGGHHHHHSTTCCSSCCS
T ss_pred ceECCHHHHHHHhcCCchhCHHHHHHHHHHHHHHCCCCeEEEEEEeCCceEEEEEEcCCCcCHHHHHHhhhcccccCccc
Confidence 99999999999999999999999999999999999999999999877666799999999999999999999999999988
Q ss_pred ccccccccccCCcchhhhhhhccceEEEEEecCCCCceEEEEeee---------------------hhhhhhhhcccchh
Q psy1955 87 FEDLNSISTFGFRGEALASISHVAHLTIITKTKTSPCAYRWCTYL---------------------ADLMALALMEMSQY 145 (512)
Q Consensus 87 ~~d~~~~~~~G~rGeaL~si~~~s~l~i~S~~~~~~~~~~~~~~~---------------------~dl~~~~F~n~Pv~ 145 (512)
++|+..+.++||+|+||+|++++|+|+|.||+.++..+|++ ... .|| |+|+|+
T Consensus 85 ~~d~~~~~~~G~~G~gl~si~~vs~l~v~s~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~GT~V~v~~L----f~n~P~- 158 (333)
T 1b63_A 85 LDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEAWQA-YAEGRDMNVTVKPAAHPVGTTLEVLDL----FYNTPA- 158 (333)
T ss_dssp HHHHHTCCSSCCSSCHHHHHHTTSEEEEEEECTTCSSEEEE-EEETTTTEEEEEEECCCSEEEEEEEST----TTTCHH-
T ss_pred cchhhhccccCccccchhhhhcCCcEEEEEecCCCceEEEE-EEcCCcceEeeecccCCCCCEEEEecc----cccchh-
Confidence 88999899999999999999999999999999887777775 211 677 999999
Q ss_pred hhHhhhcCCcHHHHHhhhhhc------ccCeEEEe--cCCcceeecC----ccChHHHHH----HHHhhcceEeeecCCc
Q psy1955 146 LQRDKEQIGDKEEKQWYRTVE------HTLVPLMK--SQYQPSEKIV----ERACLLEIA----SLNNLELLSVEGTDDA 209 (512)
Q Consensus 146 ~~Rrk~lks~~~E~~ki~~lv------~p~Vs~~~--~~~~~~~~t~----~~s~~~~i~----~~~~~~l~~i~~~~~~ 209 (512)
|++++++.+.|+.+|.+++ +|+|+|.. +|+ ..+.+. .+++.+++. ..+..++++++.+.+
T Consensus 159 --r~kflk~~~~e~~~i~~~~~~~al~~p~v~~~l~~ng~-~~~~~~~~~~~~~~~~~i~~i~G~~~~~~li~i~~~~~- 234 (333)
T 1b63_A 159 --RRKFLRTEKTEFNHIDEIIRRIALARFDVTINLSHNGK-IVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHG- 234 (333)
T ss_dssp --HHHTCCCHHHHHHHHHHHHHHHHHHCTTCEEEEEETTE-EEEEECCCCTTCCTHHHHHHHHCHHHHHHEEEEEEEET-
T ss_pred --hhhhhccHHHHHHHHHHHHHHHhccCCCcEEEEEECCE-EEEecCCCCCCchHHHHHHHHhChhhHhheEEEEecCC-
Confidence 9999999999999998888 89986554 443 233332 346667776 566788999998776
Q ss_pred ccEEEEEEEecCcccC-C-CceEEEEEeCc------hHHHHHHHHhhcCCCCCCeEEEEEeeCCCceEEEeecCCCccee
Q psy1955 210 FQLKVTGWITNVNFST-K-KMTFLLFINNP------IKRMIEQVYSIYLPKGSFPFVYLSLCMDPKNVDVNVHPTKHEVH 281 (512)
Q Consensus 210 ~~~~v~G~is~p~~~~-~-r~~q~lfVNgR------i~k~I~~~Y~~~l~~~~~P~~~L~i~ipp~~iDVNvhP~K~eV~ 281 (512)
.++++||++.|.++. + +..||+||||| |.++|.++|+.++++++||+++|+|+|||+.|||||||+|+||+
T Consensus 235 -~~~v~G~i~~p~~~~~~~~~~~~~fvNgR~V~~~~l~~ai~~~y~~~l~~~~~P~~~l~l~~~p~~vDvNvhP~K~ev~ 313 (333)
T 1b63_A 235 -DLTLRGWVADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVDVNVHPAKHEVR 313 (333)
T ss_dssp -TEEEEEEEECGGGCCTTGGGCEEEEETTEECCCHHHHHHHHHHHHHHSSSCCCCCEEEEEECCGGGEECTTSTTCCCCE
T ss_pred -CEEEEEEEEcCccccCCCCCcEEEEECCEEecCHHHHHHHHHHHHhhccCCCCcEEEEEEEeCchhccceECCCcCEEE
Confidence 699999999998764 3 57899999999 99999999999999999999999999999999999999999999
Q ss_pred ecchhhHHHHHHHHHHHHh
Q psy1955 282 FLHEDTIIERVQSMLEKTL 300 (512)
Q Consensus 282 f~~~~~I~~~I~~~l~~~l 300 (512)
|.+++.|++.|+++|+++|
T Consensus 314 f~~~~~v~~~i~~~i~~~l 332 (333)
T 1b63_A 314 FHQSRLVHDFIYQGVLSVL 332 (333)
T ss_dssp ETTHHHHHHHHHHHHHHHT
T ss_pred eCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999987
No 5
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=100.00 E-value=7.2e-39 Score=327.10 Aligned_cols=209 Identities=65% Similarity=0.973 Sum_probs=182.0
Q ss_pred HHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCceeeEeecCCCCCCCcchhhhhhhccccCCcccccccccccccc
Q psy1955 288 IIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFG 367 (512)
Q Consensus 288 I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~~~~~~~TSKi~~~~dl~~~~t~G 367 (512)
+...|.++|+|++++..+. |+|.+...|...++|.|||+||+++++..++.+|+|||+.+++|+..+.|+|
T Consensus 29 ~~~vv~eLv~NAidA~a~~---------I~I~i~~~~~~~I~V~DnG~GI~~~~l~~~~~~~~tsK~~~~~dl~~i~s~G 99 (348)
T 3na3_A 29 PANAIKEMIENCLDAKSTS---------IQVIVKEGGLKLIQIQDNGTGIRKEDLDIVCERFTTSKLQSFEDLASISTYG 99 (348)
T ss_dssp HHHHHHHHHHHHHHTTCSE---------EEEEEEGGGTSEEEEEECSCCCCGGGGGTTTSTTCCSSCCCC---------C
T ss_pred HHHHHHHHHHHHHHcCCCE---------EEEEEEeCCEEEEEEEECCcCcChHHhhhhhccccccccCcchhhhccccCC
Confidence 3467999999999997643 6677766666679999999999999999999999999999999999999999
Q ss_pred ccchhhhhHhhhcceEEEEecCCCCCceEEEEecCcccccccccCCCCCceEEehhhcccchhhhcccCCChHHHHHHHH
Q psy1955 368 FRGEALASISHVAHLTIITKTKTSPCAYRASYIDSKLKDPIKPCAGNQGTQIIAEDLFYNIPTRRKALKQPSEEYNKIAD 447 (512)
Q Consensus 368 fRGeALaSi~~~s~l~I~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTtV~V~~lF~n~PvRrk~~~~~~~e~~~i~~ 447 (512)
||||||+||+++|.|+|+||++++..+|++.+.+|+......++++++||+|+|+|||+|+|+|||++++.+.|+.+|.+
T Consensus 100 frGeaL~Si~avs~l~v~sr~~~~~~~~~~~~~~G~~~~~~~~~~~~~GTtV~v~~LF~n~P~R~k~lk~~~~e~~~i~~ 179 (348)
T 3na3_A 100 FRGEALASISHVAHVTITTKTADGKCAYRASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILE 179 (348)
T ss_dssp CTTCHHHHHHHSSEEEEEEECTTCSSEEEEEEETTEESSCCEEECCCSEEEEEEESTTTTCHHHHHTSCCHHHHHHHHHH
T ss_pred cCChHHHHhhcccEEEEEEEECCCCceEEEEEeCCEEeeeeeEecCCCCcEEEECcccccCchhhhhccccHHHHHHHHH
Confidence 99999999999999999999999889999999888765445677889999999999999999999999998999999999
Q ss_pred HHHHHhhcCCCeEEEEEECCccceeeecCCCCCHHHHHHhhcChhhhccceeeecccc
Q psy1955 448 VVSRYAVHNPHVGFTLKKQNENLADIRTNVNSSHSEVIGNIYGNNISRRVRRFSSASQ 505 (512)
Q Consensus 448 ~l~~yaL~~p~v~f~l~~~~~~~~~~~~~~~~s~~~~i~~ifG~~~~~~l~~~~~~~~ 505 (512)
+|++||++||+|+|+|+++++....+++.++.++.+++.++||..+++.|++++.+..
T Consensus 180 ~l~~~Al~~p~v~f~l~~~g~~~~~~~~~~~~~~~~~i~~i~G~~~~~~l~~v~~~~~ 237 (348)
T 3na3_A 180 VVGRYSVHNAGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGCEDK 237 (348)
T ss_dssp HHHHHHHHCTTCEEEEEETTCSSCSEECCTTCCHHHHHHHHHCHHHHTTEEEEEEEEG
T ss_pred HHHHHHhhCCCeEEEEEECCEEEEEeecCCCCCHHHHHHHHhChHhHhhcEEEEeecC
Confidence 9999999999999999999988766788888899999999999999999999997654
No 6
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-37 Score=316.01 Aligned_cols=204 Identities=27% Similarity=0.464 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCceeeEeecCCCCCCCcchhhhhhhccccCCcccccccccccccc
Q psy1955 288 IIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFG 367 (512)
Q Consensus 288 I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~~~~~~~TSKi~~~~dl~~~~t~G 367 (512)
+...|+++|+|++++.++. |+|.+...|...++|.|||+||+++++..++.+|+|||+.+++|+..+.|+|
T Consensus 26 ~~~vv~eLv~NaiDA~a~~---------I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~~Dl~~i~t~G 96 (367)
T 3h4l_A 26 LTTAVKELVDNSIDANANQ---------IEIIFKDYGLESIECSDNGDGIDPSNYEFLALKHYTSKIAKFQDVAKVQTLG 96 (367)
T ss_dssp HHHHHHHHHHHHHHTTCSE---------EEEEEETTTTSEEEEEECSCCCCGGGTTTTTCCEEC---------CCCCEEE
T ss_pred HHHHHHHHHHHHHHCCCCE---------EEEEEEeCCEEEEEEEECCCCcChhHhccceeccccCcCCchhhhhhhhccC
Confidence 3467999999999997653 6777766777789999999999999999999999999999999999999999
Q ss_pred ccchhhhhHhhhcceEEEEecCCCCCceEEEEe-cCcccccccccCCCCCceEEehhhcccchhhhc-ccCCChHHHHHH
Q psy1955 368 FRGEALASISHVAHLTIITKTKTSPCAYRASYI-DSKLKDPIKPCAGNQGTQIIAEDLFYNIPTRRK-ALKQPSEEYNKI 445 (512)
Q Consensus 368 fRGeALaSi~~~s~l~I~T~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~GTtV~V~~lF~n~PvRrk-~~~~~~~e~~~i 445 (512)
||||||+||+++|.|+|+||+++ +.+|++.+. +|+.. ...++++++||+|+|+|||+|+|+||| ++++.+.|+.+|
T Consensus 97 frGeaL~Si~avS~l~V~sr~~~-~~~~~~~~~~~G~~~-~~~~~~~~~GTtV~v~~LF~n~P~R~k~flk~~~~e~~~i 174 (367)
T 3h4l_A 97 FRGEALSSLCGIAKLSVITTTSP-PKADKLEYDMVGHIT-SKTTTSRNKGTTVLVSQLFHNLPVRQKEFSKTFKRQFTKC 174 (367)
T ss_dssp ETTHHHHHHHHSSEEEEEEESST-TCEEEEEECTTCCEE-EEEEECCSSEEEEEEESTTTTCHHHHHHHHTTHHHHHHHH
T ss_pred ccchHHHHhhccCEEEEEEEECC-CCEEEEEEcCCCcEE-eeccccCCCCeEEEEchhhccCchhhhhhccchHHHHHHH
Confidence 99999999999999999999988 789999997 55543 234678899999999999999999999 778889999999
Q ss_pred HHHHHHHhhcCCCeEEEEEEC---CccceeeecCCCCCHHHHHHhhcChhhhccceeeec
Q psy1955 446 ADVVSRYAVHNPHVGFTLKKQ---NENLADIRTNVNSSHSEVIGNIYGNNISRRVRRFSS 502 (512)
Q Consensus 446 ~~~l~~yaL~~p~v~f~l~~~---~~~~~~~~~~~~~s~~~~i~~ifG~~~~~~l~~~~~ 502 (512)
.++|++||++||+|+|+|.++ ++....+.+.+++++.+++.++||...++.|++++.
T Consensus 175 ~~~l~~~Al~~p~v~~~l~~~~~~~~~~~~~~t~~~~~~~~~i~~i~G~~~~~~l~~v~~ 234 (367)
T 3h4l_A 175 LTVIQGYAIINAAIKFSVWNITPKGKKNLILSTMRNSSMRKNISSVFGAGGMRGLEEVDL 234 (367)
T ss_dssp HHHHHHHHHHCTTCEEEEEEECTTSCEEEEEECCSSCCHHHHHHHHHCTTTTTTEEEEEE
T ss_pred HHHHHHHHhhCCCeEEEEEEcCCCCcceEEEECCCCCCHHHHHHHHhCHHHHhccEEEec
Confidence 999999999999999999984 333445777888899999999999999999999887
No 7
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.98 E-value=2.3e-32 Score=282.28 Aligned_cols=208 Identities=26% Similarity=0.467 Sum_probs=172.2
Q ss_pred hHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCceeeEeecCCCCCCCcchhhhhhhccccCCccccccccccccc
Q psy1955 287 TIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTF 366 (512)
Q Consensus 287 ~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~~~~~~~TSKi~~~~dl~~~~t~ 366 (512)
.+...|+++|+|++++.... |+|.+...+...++|.|||+||+++++..++.+|+|||+.+++|+..+.++
T Consensus 34 ~~~~vl~eLv~NAiDA~a~~---------I~I~i~~~~~~~I~V~DnG~Gi~~~~l~~~f~~~~tsK~~~~~dl~~i~s~ 104 (365)
T 1h7s_A 34 SLSTAVKELVENSLDAGATN---------IDLKLKDYGVDLIEVSDNGCGVEEENFEGLTLKHHTSKIQEFADLTQVETF 104 (365)
T ss_dssp CHHHHHHHHHHHHHHTTCSE---------EEEEEEGGGTSEEEEEECSCCCCGGGSGGGGC----------CCTTCSEEE
T ss_pred hHHHHHHHHHHHHHHCCCCE---------EEEEEEeCCcEEEEEEECCCCcCHHHHHHHhhhccccccccccchhccccc
Confidence 45688999999999987543 666666556668999999999999999999999999999999999999999
Q ss_pred cccchhhhhHhhhcceEEEEecCCCCCceEEEEe-cCcccccccccCCCCCceEEehhhcccchhhhc-ccCCChHHHHH
Q psy1955 367 GFRGEALASISHVAHLTIITKTKTSPCAYRASYI-DSKLKDPIKPCAGNQGTQIIAEDLFYNIPTRRK-ALKQPSEEYNK 444 (512)
Q Consensus 367 GfRGeALaSi~~~s~l~I~T~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~GTtV~V~~lF~n~PvRrk-~~~~~~~e~~~ 444 (512)
||||+||+|++.+|.++|+||+.++..+|++.+. +|+.. ...+.+.++||+|+|+|||+|+|+||| ++++.+.|+.+
T Consensus 105 G~rG~gl~si~~vs~v~v~t~~~~~~~~~~~~~~~~G~~~-~~~~~~~~~GT~V~v~~LF~n~P~R~k~flk~~~~e~~~ 183 (365)
T 1h7s_A 105 GFRGEALSSLCALSDVTISTCHASAKVGTRLMFDHNGKII-QKTPYPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAK 183 (365)
T ss_dssp SSSSSHHHHHHHHSEEEEEEECTTCSSCEEEEECTTSCEE-EEEECCCCSEEEEEEESTTTTSHHHHHHHHHTHHHHHHH
T ss_pred CCCCchhhhhhhhccEEEEEccCCCcceEEEEEcCCCceE-eecccCCCCCcEEEEeecccccchhhhhhccchHHHHHH
Confidence 9999999999999999999999988889999987 45543 234567889999999999999999999 66888899999
Q ss_pred HHHHHHHHhhcCCCeEEEEEECCc---cceeeecCCCCCHHHHHHhhcChhhhccceeeeccc
Q psy1955 445 IADVVSRYAVHNPHVGFTLKKQNE---NLADIRTNVNSSHSEVIGNIYGNNISRRVRRFSSAS 504 (512)
Q Consensus 445 i~~~l~~yaL~~p~v~f~l~~~~~---~~~~~~~~~~~s~~~~i~~ifG~~~~~~l~~~~~~~ 504 (512)
|.+++++||+.||+|+|+|.++++ ....+.+.+++++.+++.++||...++.|++++...
T Consensus 184 i~~~v~~~al~~p~v~f~l~~~~~~~~~~~~~~~~~~~~~~~~i~~i~G~~~~~~l~~i~~~~ 246 (365)
T 1h7s_A 184 MVQVLHAYCIISAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQLQSLIPFVQLP 246 (365)
T ss_dssp HHHHHHHHHHHCTTCEEEEEEECTTSCEEEEEECCCCSSHHHHHHHHHCHHHHHTEEECCCCC
T ss_pred HHHhhhhhhhcCCceEEEEEecCCCCcEEEEEEcCCCchHHHHHHHhcChHhHhceEEEeccC
Confidence 999999999999999999998772 234577777789999999999999999999996543
No 8
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.97 E-value=3.1e-31 Score=271.33 Aligned_cols=209 Identities=32% Similarity=0.524 Sum_probs=179.2
Q ss_pred hHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCceeeEeecCCCCCCCcchhhhhhhccccCCccccccccccccc
Q psy1955 287 TIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTF 366 (512)
Q Consensus 287 ~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~~~~~~~TSKi~~~~dl~~~~t~ 366 (512)
.+...|+++|+|++++.++. |+|.+...|...++|.|||+||+++++..++.+|+|||+.+++|+..+.++
T Consensus 24 ~~~~~v~ELi~NaidA~a~~---------I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~~d~~~~~~~ 94 (333)
T 1b63_A 24 RPASVVKELVENSLDAGATR---------IDIDIERGGAKLIRIRDNGCGIKKDELALALARHATSKIASLDDLEAIISL 94 (333)
T ss_dssp SHHHHHHHHHHHHHHTTCSE---------EEEEEEGGGTSEEEEEECSCCCCGGGHHHHHSTTCCSSCCSHHHHHTCCSS
T ss_pred CHHHHHHHHHHHHHHCCCCe---------EEEEEEeCCceEEEEEEcCCCcCHHHHHHhhhcccccCccccchhhhcccc
Confidence 34577999999999998643 667776666678999999999999999999999999999998899888999
Q ss_pred cccchhhhhHhhhcceEEEEecCCCCCceEEEEecCcccccccccCCCCCceEEehhhcccchhhhcccCCChHHHHHHH
Q psy1955 367 GFRGEALASISHVAHLTIITKTKTSPCAYRASYIDSKLKDPIKPCAGNQGTQIIAEDLFYNIPTRRKALKQPSEEYNKIA 446 (512)
Q Consensus 367 GfRGeALaSi~~~s~l~I~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTtV~V~~lF~n~PvRrk~~~~~~~e~~~i~ 446 (512)
||||++|+|++.+|.++|+||+.++..+|++...++.......+...++||+|+|+|||+|+|+||+++++...|+.+|.
T Consensus 95 G~~G~gl~si~~vs~l~v~s~~~~~~~~~~~~~~g~~~~~~~~~~~~~~GT~V~v~~Lf~n~P~r~kflk~~~~e~~~i~ 174 (333)
T 1b63_A 95 GFRGEALASISSVSRLTLTSRTAEQQEAWQAYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHID 174 (333)
T ss_dssp CCSSCHHHHHHTTSEEEEEEECTTCSSEEEEEEETTTTEEEEEEECCCSEEEEEEESTTTTCHHHHHTCCCHHHHHHHHH
T ss_pred CccccchhhhhcCCcEEEEEecCCCceEEEEEEcCCcceEeeecccCCCCCEEEEecccccchhhhhhhccHHHHHHHHH
Confidence 99999999999999999999999877888774333331223345677899999999999999999999998889999999
Q ss_pred HHHHHHhhcCCCeEEEEEECCccceeeecC-CCCCHHHHHHhhcChhhhccceeeeccc
Q psy1955 447 DVVSRYAVHNPHVGFTLKKQNENLADIRTN-VNSSHSEVIGNIYGNNISRRVRRFSSAS 504 (512)
Q Consensus 447 ~~l~~yaL~~p~v~f~l~~~~~~~~~~~~~-~~~s~~~~i~~ifG~~~~~~l~~~~~~~ 504 (512)
+++++||++||+|+|+|.++++.+..+.+. .+.++.+++..+||....+.+++++.+.
T Consensus 175 ~~~~~~al~~p~v~~~l~~ng~~~~~~~~~~~~~~~~~~i~~i~G~~~~~~li~i~~~~ 233 (333)
T 1b63_A 175 EIIRRIALARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQH 233 (333)
T ss_dssp HHHHHHHHHCTTCEEEEEETTEEEEEECCCCTTCCTHHHHHHHHCHHHHHHEEEEEEEE
T ss_pred HHHHHHhccCCCcEEEEEECCEEEEecCCCCCCchHHHHHHHHhChhhHhheEEEEecC
Confidence 999999999999999999999876555432 2457899999999999999999998654
No 9
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=99.89 E-value=2e-23 Score=198.23 Aligned_cols=157 Identities=15% Similarity=0.311 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHhcC---C-CCcceeecceeeEEEEEccCceeeEeecCCCCCCCcchh--------hh-hhhccccCCcc
Q psy1955 289 IERVQSMLEKTLLG---S-NTSRVFYTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDM--------DI-VCERFTTSKLT 355 (512)
Q Consensus 289 ~~~I~~~l~~~l~~---~-~~~r~~~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l--------~~-~~~~~~TSKi~ 355 (512)
...|++.|+|++++ + .+. |+|.+...| .++|.|||+||+.++. .. ++.+|+|||++
T Consensus 19 ~~~v~Elv~NsiDa~~~g~a~~---------I~V~i~~~g--~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~hatsK~~ 87 (201)
T 3fv5_A 19 NHLGQEVIDNSVDEALAGHAKR---------VDVILHADQ--SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFS 87 (201)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSE---------EEEEECTTS--CEEEEECSSCCCCSBCTTCSSBHHHHHHHCC-------
T ss_pred hhhhHHHHHHHHHHHhcCCCcE---------EEEEEeCCC--EEEEEECCCCcCcccccccCcchhheeeeeeccccCcC
Confidence 66788888888888 3 332 777777555 7999999999999884 34 68999999998
Q ss_pred ccccccccccccccchhhhhHhhhc-ceEEEEecCCCCCceEEEEecCccccccc---cc-CCCCCceEEehhhcccchh
Q psy1955 356 QFEDLNSISTFGFRGEALASISHVA-HLTIITKTKTSPCAYRASYIDSKLKDPIK---PC-AGNQGTQIIAEDLFYNIPT 430 (512)
Q Consensus 356 ~~~dl~~~~t~GfRGeALaSi~~~s-~l~I~T~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~GTtV~V~~lF~n~Pv 430 (512)
+ |+..+ |+|||||||+|++++| .++|+|++.+ ..|+..|.+|....+.. ++ +.+.||+|++ .|+
T Consensus 88 ~--~~~~~-s~GfrGeglssinalS~~l~v~t~~~g--~~~~~~~~~G~~~~~~~~~g~~~~~~~GT~V~f------~Pd 156 (201)
T 3fv5_A 88 N--KNYQF-SGGLHGVGISVVNALSKRVEVNVRRDG--QVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHF------WPD 156 (201)
T ss_dssp -----------------CHHHHHTEEEEEEEEEETT--EEEEEEEETTEEEEEEEEEEECCTTCCEEEEEE------EEC
T ss_pred C--Ccccc-cCcccceecchhhcccceEEEEEEecC--ceEEEEEeCCEEcccceecccCCCCCCCeEEEE------EEC
Confidence 6 66665 8999999999999999 7999999865 36888898886543222 22 2679999999 599
Q ss_pred hhcccCCChHHHHHHHHHHHHHhhcCCCeEEEEEECCc
Q psy1955 431 RRKALKQPSEEYNKIADVVSRYAVHNPHVGFTLKKQNE 468 (512)
Q Consensus 431 Rrk~~~~~~~e~~~i~~~l~~yaL~~p~v~f~l~~~~~ 468 (512)
|++| ++...|+..|.+.|++||+.||.|+|+|.++..
T Consensus 157 r~~F-~~~~~e~~~i~~~l~~lA~l~pgv~~~l~~~r~ 193 (201)
T 3fv5_A 157 ETFF-DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEIN 193 (201)
T ss_dssp GGGS-SCCCCCHHHHHHHHHHHHHHSTTCEEEEEETTT
T ss_pred HHHc-CCCccCHHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 9888 888889999999999999999999999998753
No 10
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=99.87 E-value=1.9e-21 Score=202.14 Aligned_cols=277 Identities=12% Similarity=0.067 Sum_probs=188.2
Q ss_pred CccccccChHHHHHHhcCCcccCH--HHHHHHHHHccccC---C-CCeEEEEEEeCCeeeEEEEeCCCCCCHHh------
Q psy1955 4 PPKIKKLDETVVNRIAAGEVIQRP--ANALKELLENSLDA---K-STSIQVTVKQGGLKLLQIQDNGTGIRKED------ 71 (512)
Q Consensus 4 ~~~i~~l~~~~~~~i~s~~~i~~~--~~~v~eLv~Ns~dA---~-a~~i~i~~~~~~~~~i~v~DnG~Gi~~~~------ 71 (512)
+..|+.|..--.=+.+-|..|.+. .++|+|||+||+|+ | |+.|.|.++.++ .|+|.|||+|||.++
T Consensus 7 ~~~i~~L~gle~vr~RPgmYiGs~~~~~lv~ElvdNsiD~a~~g~a~~I~V~i~~~g--~I~V~DnG~GIp~~~~~~~~~ 84 (390)
T 1s16_A 7 ADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHADQ--SLEVIDDGRGMPVDIHPEEGV 84 (390)
T ss_dssp GGGCEECCTTHHHHHCGGGTSCTTSTHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS--CEEEEECSSCCCCSBCTTTCS
T ss_pred HHHcEEcchhHHHhhCCceeecCCcHHHHHHHHHHHHHHHHhcCCCCEEEEEEecCC--EEEEEECCCCcCcccccccCc
Confidence 456888887666677788998666 99999999999998 5 999999998776 599999999999998
Q ss_pred --HHHHHhh-cccCCCCCccccccccccCCcchhhhhhhccc-eEEEEEecCCCCceEEEEeeehh-----h--------
Q psy1955 72 --MDIVCER-FTTSKLTQFEDLNSISTFGFRGEALASISHVA-HLTIITKTKTSPCAYRWCTYLAD-----L-------- 134 (512)
Q Consensus 72 --~~~~~~~-~~tsK~~~~~d~~~~~~~G~rGeaL~si~~~s-~l~i~S~~~~~~~~~~~~~~~~d-----l-------- 134 (512)
++.++.+ |++||+.+ |...+ +.||+|+||++++++| .++|+|+..+ .+|+. .|... +
T Consensus 85 ~~~e~v~~~lhagsKf~~--~~~~~-sgGl~GvGls~vnalS~~l~v~~~r~g--~~~~~-~~~~G~~~~~~~~~g~~~~ 158 (390)
T 1s16_A 85 PAVELILCRLHAGGKFSN--KNYQF-SGGLHGVGISVVNALSKRVEVNVRRDG--QVYNI-AFENGEKVQDLQVVGTCGK 158 (390)
T ss_dssp BHHHHHHHCTTEESCSSS--SSCSS-CSCCSSCHHHHHHHTEEEEEEEEEETT--EEEEE-EEETTEEEEEEEEEEECCT
T ss_pred chhhheeeeecccCCcCC--Ccccc-cCCccccchHHHHHhhcccEEEEEECC--cEEEE-EEeCCcccccceecccccC
Confidence 7887877 89999864 55554 8999999999999999 5999999643 56776 55510 1
Q ss_pred ----hhhhhcccchhhhHhhhcCCcHHHHHhhhhhc------ccCeEEEecCCc----ceeecCccChHHHHHHHH----
Q psy1955 135 ----MALALMEMSQYLQRDKEQIGDKEEKQWYRTVE------HTLVPLMKSQYQ----PSEKIVERACLLEIASLN---- 196 (512)
Q Consensus 135 ----~~~~F~n~Pv~~~Rrk~lks~~~E~~ki~~lv------~p~Vs~~~~~~~----~~~~t~~~s~~~~i~~~~---- 196 (512)
...-|. |. |++| ++...++..|.+.+ +|+|.|...++. ..|..+ +.+.+.+....
T Consensus 159 ~~~GT~V~f~--Pd---~~~F-~~~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~~~~~~~f~~~-gGl~~~v~~l~~~~~ 231 (390)
T 1s16_A 159 RNTGTSVHFW--PD---ETFF-DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQ-DGLNDYLAEAVNGLP 231 (390)
T ss_dssp TCCEEEEEEE--EC---GGGS-SCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTTTEEEEECCS-SCHHHHHHHHHTTSC
T ss_pred CCCceEEEEE--EC---cccc-CcccccHHHHHHHHHHHHhcCCCcEEEEEeCCCceeEEEEcC-CcHHHHHHHHhCCCc
Confidence 111344 66 8887 66666666666666 999977765543 345544 34777766222
Q ss_pred --hhcceEeeecCCcccEEEEEEEecCcccCCCceEEEEEeCc-----------hHHHHHHHHhhcCC-----CC-----
Q psy1955 197 --NLELLSVEGTDDAFQLKVTGWITNVNFSTKKMTFLLFINNP-----------IKRMIEQVYSIYLP-----KG----- 253 (512)
Q Consensus 197 --~~~l~~i~~~~~~~~~~v~G~is~p~~~~~r~~q~lfVNgR-----------i~k~I~~~Y~~~l~-----~~----- 253 (512)
..+++.++.+.+ .+.+++.+..|+ ...+..|+.|||+| ++.++.++.+.|.. +.
T Consensus 232 ~~~~~~i~~~~~~~--~~~ve~a~~~~~-~~~~~~~~sFvN~i~t~~GGTH~~gfr~alt~~i~~~~~~~~~~k~~~~l~ 308 (390)
T 1s16_A 232 TLPEKPFIGNFAGD--TEAVDWALLWLP-EGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLS 308 (390)
T ss_dssp CEEEEEEEEEEECS--SEEEEEEEEECT-TCCCCCEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCSCTTCCCC
T ss_pred ccCCCcEEEEEeeC--CEEEEEEEEecc-CCCCceEEEEECCEecCCCCCHHHHHHHHHHHHHHHHHHHhCcCccCCccC
Confidence 224556665555 588999998762 12246799999999 55555555444432 11
Q ss_pred -----CCeEEEEEeeCCCceEEEeecCCCcceeecc-hhhHHHHHHHHHHHHhc
Q psy1955 254 -----SFPFVYLSLCMDPKNVDVNVHPTKHEVHFLH-EDTIIERVQSMLEKTLL 301 (512)
Q Consensus 254 -----~~P~~~L~i~ipp~~iDVNvhP~K~eV~f~~-~~~I~~~I~~~l~~~l~ 301 (512)
..=++++++.+|.-.++ -.+|...-=.. ...+-..+.+.+...|.
T Consensus 309 ~~dvregl~avisvki~~P~Fe---gQTK~kL~~~e~~~~v~~~v~~~l~~~l~ 359 (390)
T 1s16_A 309 AEDIWDRCAYVLSVKMQDPQFA---GQTKERLSSRQCAAFVSGVVKDAFILWLN 359 (390)
T ss_dssp HHHHHTTEEEEEEEEESSCCBS---STTCCCBCCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccEEEEEeecCCCCcc---ccccchhcChhHHHHHHHHHHHHHHHHHH
Confidence 12267888888755444 34565432111 12222344455554443
No 11
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=99.86 E-value=1.5e-21 Score=202.91 Aligned_cols=253 Identities=15% Similarity=0.163 Sum_probs=176.8
Q ss_pred ccccccChHHHHHHhcCCccc------CHHHHHHHHHHccccC---C-CCeEEEEEEeCCeeeEEEEeCCCCCCHHh---
Q psy1955 5 PKIKKLDETVVNRIAAGEVIQ------RPANALKELLENSLDA---K-STSIQVTVKQGGLKLLQIQDNGTGIRKED--- 71 (512)
Q Consensus 5 ~~i~~l~~~~~~~i~s~~~i~------~~~~~v~eLv~Ns~dA---~-a~~i~i~~~~~~~~~i~v~DnG~Gi~~~~--- 71 (512)
..|+.|..--.-+.+.|..|. .|.++|+|||+||+|| | |+.|.|.++.++ .|+|.|||+|||.++
T Consensus 7 ~~i~~L~gle~vrkRPgmYiGst~~~~gl~~lv~ElvdNsiDea~~g~a~~I~V~i~~~g--~I~V~DnG~GIp~~~~~~ 84 (391)
T 1ei1_A 7 SSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADN--SVSVQDDGRGIPTGIHPE 84 (391)
T ss_dssp GGCEECCTTHHHHHCTHHHHCCSSSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTS--CEEEEECSSCCCCSBCTT
T ss_pred HHCEECchhHHHHcCCCeEECCCCCCcCHHHHHHHHHHhHHHHHhcCCCCEEEEEEeCCC--EEEEEECCCCcccCcccc
Confidence 457777766666667777773 7899999999999999 6 999999998776 699999999999988
Q ss_pred -----HHHHHh-hcccCCCCCccccccccccCCcchhhhhhhccc-eEEEEEecCCCCceEEEEeeehh-----h-----
Q psy1955 72 -----MDIVCE-RFTTSKLTQFEDLNSISTFGFRGEALASISHVA-HLTIITKTKTSPCAYRWCTYLAD-----L----- 134 (512)
Q Consensus 72 -----~~~~~~-~~~tsK~~~~~d~~~~~~~G~rGeaL~si~~~s-~l~i~S~~~~~~~~~~~~~~~~d-----l----- 134 (512)
++.++. .|++||+.+ |...+ +.||||+||++++++| .++|+|+..+ .+|+. .|... +
T Consensus 85 ~~~~~~elv~~~lhagsKf~~--~~~~v-SgGl~GvGls~vnalS~~l~v~~~r~g--~~~~~-~~~~G~~~~~l~~~~~ 158 (391)
T 1ei1_A 85 EGVSAAEVIMTVLHAGGKFDD--NSYKV-SGGLHGVGVSVVNALSQKLELVIQREG--KIHRQ-IYEHGVPQAPLAVTGE 158 (391)
T ss_dssp TSSBHHHHHHHSTTEESCSSS--SSCSS-CSCCSSCHHHHHHHTEEEEEEEEEETT--EEEEE-EEETTEESSCCEEEEE
T ss_pred cCcchHHHhheeccccCCcCC--Ccccc-cCCccccchHHHHHhcCeEEEEEEeCC--cEEEE-EEcCCcccccceeccC
Confidence 666665 899999864 55554 9999999999999999 5999998643 57777 66511 1
Q ss_pred -----hhhhhcccchhhhHhhhcCC-cHHHHHhhhhhc------ccCeEEEecCCc----ceeecCccChHHHHHHH---
Q psy1955 135 -----MALALMEMSQYLQRDKEQIG-DKEEKQWYRTVE------HTLVPLMKSQYQ----PSEKIVERACLLEIASL--- 195 (512)
Q Consensus 135 -----~~~~F~n~Pv~~~Rrk~lks-~~~E~~ki~~lv------~p~Vs~~~~~~~----~~~~t~~~s~~~~i~~~--- 195 (512)
...-|. |. |++| ++ ...++..|.+.+ +|+|.|...++. ..|..++ .+.+.+...
T Consensus 159 ~~~~GT~V~f~--Pd---~~~F-~~~~~~e~~~l~~rlr~lA~lnpgv~i~l~d~~~~~~~~f~~~g-Gl~~~v~~l~~~ 231 (391)
T 1ei1_A 159 TEKTGTMVRFW--PS---LETF-TNVTEFEYEILAKRLRELSFLDSGVSIRLRDKRDGKEDHFHYEG-GIKAFVEYLNKN 231 (391)
T ss_dssp CSCCEEEEEEE--EC---TTTC-CSCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTTCCEEEECCCS-HHHHHHHHHHHT
T ss_pred cCCCccEEEEE--EC---hhhh-CCccccCHHHHHHHHHHhcccCCCcEEEEEcCCCcceEEEEcCc-hHHHHHHHHcCC
Confidence 112354 67 8887 66 556666666666 999977765543 3455543 366666511
Q ss_pred ---HhhcceEeeecCCcccEEEEEEEecCcccCCCceEEEEEeCc-----------hHHHHHHHHhhcCC-----CC---
Q psy1955 196 ---NNLELLSVEGTDDAFQLKVTGWITNVNFSTKKMTFLLFINNP-----------IKRMIEQVYSIYLP-----KG--- 253 (512)
Q Consensus 196 ---~~~~l~~i~~~~~~~~~~v~G~is~p~~~~~r~~q~lfVNgR-----------i~k~I~~~Y~~~l~-----~~--- 253 (512)
+..+++.++.+.+ .+.+++.+..|. ..+..++.|||+| ++.++.++.+.|.. +.
T Consensus 232 ~~~~~~~~i~~~~~~~--~i~veva~~~~~--~~~e~~~sFvN~i~t~~GGTH~~gfr~alt~~i~~~~~~~~l~k~~~~ 307 (391)
T 1ei1_A 232 KTPIHPNIFYFSTEKD--GIGVEVALQWND--GFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKV 307 (391)
T ss_dssp SCBSSSCCEEEEEEET--TEEEEEEEEEBS--SCCEEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTHHHHHCC
T ss_pred CcccccccEEEEEecC--CEEEEEEEEccC--CCCeeEEEEEcceecCCCCcHHHHHHHHHHHHHHHHHHHhCcccccCC
Confidence 2335666666555 588999988653 2345689999999 44444444333321 10
Q ss_pred --------CCeEEEEEeeCCCceEEEeecCCCcc
Q psy1955 254 --------SFPFVYLSLCMDPKNVDVNVHPTKHE 279 (512)
Q Consensus 254 --------~~P~~~L~i~ipp~~iDVNvhP~K~e 279 (512)
..=++++++.+|.-.++ -.+|..
T Consensus 308 ~~~~~dvregl~avisvki~~P~Fe---gQTK~k 338 (391)
T 1ei1_A 308 SATGDDAREGLIAVVSVKVPDPKFS---SQTKDK 338 (391)
T ss_dssp CCCHHHHTTTEEEEEEEECSSCCBS---STTCCS
T ss_pred ccCHHHHhhccEEEEEEecCCCCcC---Cccccc
Confidence 23378899998755544 345554
No 12
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=99.83 E-value=2e-21 Score=184.45 Aligned_cols=145 Identities=14% Similarity=0.252 Sum_probs=97.0
Q ss_pred hcCCccc--CHHHHHHHHHHccccC---C-CCeEEEEEEeCCeeeEEEEeCCCCCCHHh--------HHH-HHhhcccCC
Q psy1955 19 AAGEVIQ--RPANALKELLENSLDA---K-STSIQVTVKQGGLKLLQIQDNGTGIRKED--------MDI-VCERFTTSK 83 (512)
Q Consensus 19 ~s~~~i~--~~~~~v~eLv~Ns~dA---~-a~~i~i~~~~~~~~~i~v~DnG~Gi~~~~--------~~~-~~~~~~tsK 83 (512)
+.|..|. ++.++|+|||+||+|| | |+.|.|.++.++ .|+|.|||+||+.++ ++. ++.+|+|||
T Consensus 8 rpgmyig~~~~~~~v~Elv~NsiDa~~~g~a~~I~V~i~~~g--~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~hatsK 85 (201)
T 3fv5_A 8 RPGMYTDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHADQ--SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGK 85 (201)
T ss_dssp CGGGTSCTTSTHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS--CEEEEECSSCCCCSBCTTCSSBHHHHHHHCC-----
T ss_pred CCccEECCCChhhhhHHHHHHHHHHHhcCCCcEEEEEEeCCC--EEEEEECCCCcCcccccccCcchhheeeeeeccccC
Confidence 3455553 3589999999999999 5 999999998665 599999999999998 556 689999999
Q ss_pred CCCccccccccccCCcchhhhhhhccc-eEEEEEecCCCCceEEEEeeehh-----h------------hhhhhcccchh
Q psy1955 84 LTQFEDLNSISTFGFRGEALASISHVA-HLTIITKTKTSPCAYRWCTYLAD-----L------------MALALMEMSQY 145 (512)
Q Consensus 84 ~~~~~d~~~~~~~G~rGeaL~si~~~s-~l~i~S~~~~~~~~~~~~~~~~d-----l------------~~~~F~n~Pv~ 145 (512)
+.+ |+..+ ++||||+||+|++++| .++|+|+..+ .+|+. .|... + ....| .|.
T Consensus 86 ~~~--~~~~~-s~GfrGeglssinalS~~l~v~t~~~g--~~~~~-~~~~G~~~~~~~~~g~~~~~~~GT~V~f--~Pd- 156 (201)
T 3fv5_A 86 FSN--KNYQF-SGGLHGVGISVVNALSKRVEVNVRRDG--QVYNI-AFENGEKVQDLQVVGTCGKRNTGTSVHF--WPD- 156 (201)
T ss_dssp -------------------CHHHHHTEEEEEEEEEETT--EEEEE-EEETTEEEEEEEEEEECCTTCCEEEEEE--EEC-
T ss_pred cCC--Ccccc-cCcccceecchhhcccceEEEEEEecC--ceEEE-EEeCCEEcccceecccCCCCCCCeEEEE--EEC-
Confidence 875 66665 8999999999999999 7999999754 35766 55510 0 11235 588
Q ss_pred hhHhhhcCCcHHHHHhhhhhc------ccCeEEEecCC
Q psy1955 146 LQRDKEQIGDKEEKQWYRTVE------HTLVPLMKSQY 177 (512)
Q Consensus 146 ~~Rrk~lks~~~E~~ki~~lv------~p~Vs~~~~~~ 177 (512)
|++| ++.+.|+..|.+.+ +|+|+|...++
T Consensus 157 --r~~F-~~~~~e~~~i~~~l~~lA~l~pgv~~~l~~~ 191 (201)
T 3fv5_A 157 --ETFF-DSPRFSVSRLTHVLKAKAVLCPGVEITFKDE 191 (201)
T ss_dssp --GGGS-SCCCCCHHHHHHHHHHHHHHSTTCEEEEEET
T ss_pred --HHHc-CCCccCHHHHHHHHHHHHHhCCCCEEEEEec
Confidence 9888 88888888888887 99998876554
No 13
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=99.82 E-value=1.2e-19 Score=187.13 Aligned_cols=252 Identities=10% Similarity=0.027 Sum_probs=177.2
Q ss_pred cCHHHHHHHHHHccccC----CCCeEEEEEEeCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCCcc
Q psy1955 25 QRPANALKELLENSLDA----KSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFRG 100 (512)
Q Consensus 25 ~~~~~~v~eLv~Ns~dA----~a~~i~i~~~~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~rG 100 (512)
..|.++|+||||||+|| +|+.|.|.++.+| .|+|.|||+|||. +.++.+|+|||+.+.+ ....|+++|
T Consensus 29 ~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i~~~g--~I~V~DnGrGIp~---e~v~~lhagsKf~~~~---~~~~y~vsG 100 (369)
T 3cwv_A 29 YGLHHLVYFLLDVAYEEARRGECRDVVLEVGGDG--SIALFCTSRTVTA---ENLVRVATGAGFLGRP---PGDGWGWDS 100 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS--CEEEEEEESSCCH---HHHHHHHTTTTGGGSS---CCCSTTTTS
T ss_pred chHHHHHHHHHhhhHhHHhhCCCCEEEEEEeCCC--EEEEEECCCCcCH---hHeeeeecCCCcCCCc---ccccccccC
Confidence 57899999999999998 8999999998776 5999999999999 4445999999986543 114677777
Q ss_pred hhhhhhhccc-eEEEEEecCCCCceEEEEeeehh-----------hh----------hhhhcccchhhhHhhhcCCcHHH
Q psy1955 101 EALASISHVA-HLTIITKTKTSPCAYRWCTYLAD-----------LM----------ALALMEMSQYLQRDKEQIGDKEE 158 (512)
Q Consensus 101 eaL~si~~~s-~l~i~S~~~~~~~~~~~~~~~~d-----------l~----------~~~F~n~Pv~~~Rrk~lks~~~E 158 (512)
+|++++++| .++|+|+..+ .+|+. .|... +. ..-|. |. |++| ++.+.|
T Consensus 101 -Gls~vnalSs~l~v~t~r~g--~~~~~-~~~~G~~~~~~~~~~~l~~~g~~~~~GT~V~f~--Pd---~~~F-~~~~~e 170 (369)
T 3cwv_A 101 -MLVVSLALSSRYQVDIWADG--RQWRV-MGEHGHPQGEGAAVTPMEPMPVSAERGVRVHFV--PD---ATIF-EVLAFD 170 (369)
T ss_dssp -SHHHHHHTEEEEEEEEEETT--EEEEE-EEETTEECTTCEEESSCCCCSSCCSEEEEEEEE--EC---TTTC-SCCCCC
T ss_pred -HHHHHHHhhceEEEEEEECC--CEEEE-EEeCCcccccccccCCceEecccCCCCCEEEEE--EC---HHHh-CCcccc
Confidence 899999997 6999999753 47777 66522 10 01243 66 8888 777777
Q ss_pred HHhhhhhc------ccCeEEEecCCc----ceeecCccChHHHHHHH------HhhcceEeeecCCcccEEEEEEEecCc
Q psy1955 159 KQWYRTVE------HTLVPLMKSQYQ----PSEKIVERACLLEIASL------NNLELLSVEGTDDAFQLKVTGWITNVN 222 (512)
Q Consensus 159 ~~ki~~lv------~p~Vs~~~~~~~----~~~~t~~~s~~~~i~~~------~~~~l~~i~~~~~~~~~~v~G~is~p~ 222 (512)
+..|.+.+ +|+|.|...++. ..|..+. .+.+.+... +..+++.++.+.+ .+.++|+++.|.
T Consensus 171 ~~~l~~rl~~lA~lnpgv~i~l~d~~~~~~~~f~~~g-Gl~~~v~~l~~~~~~~~~~~i~~~~~~~--~i~ve~a~~~~~ 247 (369)
T 3cwv_A 171 RARLSRRCNELAALAPGLRVSFADLQRGERTLWHLPG-GVAQWAHVLTEARPQLHPEPVVFDFTWD--GLRVQCALQWCE 247 (369)
T ss_dssp HHHHHHHHHHHHHHSTTCEEEEEETTTTEEEEEECTT-HHHHHHHHHHTTSCBSSSSCEEEEEEET--TEEEEEEEEEBS
T ss_pred HHHHHHHHHHHcCcCCCcEEEEEeCCCCeeEEEEeCc-hHHHHHHHHhcCCcccCCCcEEEEEecC--CEEEEEEEEecC
Confidence 77777777 999977765432 4455543 366666622 2335667776655 588999998763
Q ss_pred ccCCCceEEEEEeCc-----------hHHHHHHHHhhcCCCC----------CCeEEEEEeeCCCce--EEEeecCCCcc
Q psy1955 223 FSTKKMTFLLFINNP-----------IKRMIEQVYSIYLPKG----------SFPFVYLSLCMDPKN--VDVNVHPTKHE 279 (512)
Q Consensus 223 ~~~~r~~q~lfVNgR-----------i~k~I~~~Y~~~l~~~----------~~P~~~L~i~ipp~~--iDVNvhP~K~e 279 (512)
..+..|+.|||+| ++.+|.++|++|+.+. ..=.+++++.+|.-. ++ -.+|..
T Consensus 248 --~~~~~~~sFVN~i~t~~GGTH~~g~~~al~~a~~~~~k~~~~~l~~~dvregl~avisvk~~~P~~~Fe---gQTK~k 322 (369)
T 3cwv_A 248 --DEDSTLLSFANAVRTVRHGAHVKGVTQALRGALAKLSGETRGAFPWARVAQGLTAIVAVSGPRRQMAFA---GPTKEL 322 (369)
T ss_dssp --SSCCEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHTCCGGGSCHHHHTTTEEEEEEEECCGGGCCBS---STTCCS
T ss_pred --CCCeeEEEEECCEEeCCCCCHHHHHHHHHHHHHHHHHhhcCCCcCHHHHhhccEEEEEeccCCcchhcc---ccccch
Confidence 3356799999999 8899999999998322 122678898886544 33 355655
Q ss_pred eeecc-hhhHHHHHHHHHHHHhcC
Q psy1955 280 VHFLH-EDTIIERVQSMLEKTLLG 302 (512)
Q Consensus 280 V~f~~-~~~I~~~I~~~l~~~l~~ 302 (512)
.-=.. ...|-..+.+.+...|..
T Consensus 323 L~~~e~~~~v~~~v~~~l~~~l~~ 346 (369)
T 3cwv_A 323 LAIPGLEEAIRKQLQPLFIELLRE 346 (369)
T ss_dssp BCCTTHHHHHHHHHHHHHHHHHHT
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHH
Confidence 33221 133345566666666654
No 14
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=99.78 E-value=1.8e-19 Score=194.03 Aligned_cols=254 Identities=18% Similarity=0.186 Sum_probs=161.8
Q ss_pred cccCHHHHHHHHHHccccCC----------------CC--eEEEEEEeCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCC
Q psy1955 23 VIQRPANALKELLENSLDAK----------------ST--SIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKL 84 (512)
Q Consensus 23 ~i~~~~~~v~eLv~Ns~dA~----------------a~--~i~i~~~~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~ 84 (512)
...++..+|+|||+||+||+ ++ .|.|.++.++ ..|+|.|||+||+++++...+.++++|+.
T Consensus 24 lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~-~~I~I~DnGiGMt~edl~~~l~tiA~Sg~ 102 (559)
T 1y4s_A 24 LYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDK-RTLTISDNGVGMTRDEVIDHLGTIAKSGT 102 (559)
T ss_dssp TGGGTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTT-TEEEEEECSSCCCHHHHHHHHSCCSCCCC
T ss_pred cCCChHHHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeCCC-cEEEEEECCCCCCHHHHHHHHhhhccccc
Confidence 55788999999999999998 54 6777776665 56999999999999999999999999985
Q ss_pred CCc-cc-----cccccccCCcchhhhhhhccc-eEEEEEecCCC--CceEEEEeee-hhhhhhhhcccch-hhhH----h
Q psy1955 85 TQF-ED-----LNSISTFGFRGEALASISHVA-HLTIITKTKTS--PCAYRWCTYL-ADLMALALMEMSQ-YLQR----D 149 (512)
Q Consensus 85 ~~~-~d-----~~~~~~~G~rGeaL~si~~~s-~l~i~S~~~~~--~~~~~~~~~~-~dl~~~~F~n~Pv-~~~R----r 149 (512)
..| ++ ......+|++|+|++|+..++ +|+|.||+.+. ..+|.| ... ... |.-.|+ =..| .
T Consensus 103 ~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w-~s~g~~~----~~i~~~~~~~~GT~I~ 177 (559)
T 1y4s_A 103 KSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFW-ESAGEGE----YTVADITKEDRGTEIT 177 (559)
T ss_dssp CCTTCC--------CCCCSSCCCSGGGHHHHEEEEEEEEECSSSCGGGEEEE-EECSSSE----EEEEEECCCSCEEEEE
T ss_pred HHHHHHhhccccccccccCCCCcchhhhhhccCeEEEEEcCCCCCCCeeEEE-EEeCCCe----eEEeECCCCCCCeEEE
Confidence 543 11 235678999999999999997 59999999873 667877 333 111 111110 0000 0
Q ss_pred hhcCCcHHH---HHhhhhhc--------ccCeEEE--------------ecCC-cceeecCccChHH-HHH---HH----
Q psy1955 150 KEQIGDKEE---KQWYRTVE--------HTLVPLM--------------KSQY-QPSEKIVERACLL-EIA---SL---- 195 (512)
Q Consensus 150 k~lks~~~E---~~ki~~lv--------~p~Vs~~--------------~~~~-~~~~~t~~~s~~~-~i~---~~---- 195 (512)
=.|+....| ..+|.++| +| |.|. ..++ ...|..+...+.+ .+. ..
T Consensus 178 L~Lk~d~~Efle~~~I~~iv~kys~fi~~P-I~~~~~e~~~~~~~~~~~~in~~~~lw~~~~~~i~~e~y~~fy~~~~~d 256 (559)
T 1y4s_A 178 LHLREGEDEFLDDWRVRSIISKYSDHIALP-VEIEKREEKDGETVISWEKINKAQALWTRNKSEITDEEYKEFYKHIAHD 256 (559)
T ss_dssp EEECTTCGGGSCHHHHHHHHHHHHTTCSSC-EEEEEEECSTTSCEEEEEECCCCCCGGGSCGGGCCHHHHHHHHHHHHTC
T ss_pred EEEcchhhhcchHHHHHHHHHHHhccCCCc-eEEeeccccccccccceEEEeCCccceecCcccccHHHHHHHHHhhhhh
Confidence 002222222 34455544 78 8882 2222 2444443222222 222 32
Q ss_pred HhhcceEeeecCCcccEEEEEEEecCcc------c-CCCceEEEEEeCc-hHHHHHHHHhhcCCCCCCeEEEEEee--CC
Q psy1955 196 NNLELLSVEGTDDAFQLKVTGWITNVNF------S-TKKMTFLLFINNP-IKRMIEQVYSIYLPKGSFPFVYLSLC--MD 265 (512)
Q Consensus 196 ~~~~l~~i~~~~~~~~~~v~G~is~p~~------~-~~r~~q~lfVNgR-i~k~I~~~Y~~~l~~~~~P~~~L~i~--ip 265 (512)
+...|..+....++ .+.+.|++..|.. . ..+..+++|||+| |..- +++++|. +++++. ||
T Consensus 257 ~~~~l~~ih~~~eg-~~~~~gll~~P~~~p~~~~~r~~~~~i~lyvn~v~I~d~----~~~llP~-----~l~fv~gvVD 326 (559)
T 1y4s_A 257 FNDPLTWSHNRVEG-KQEYTSLLYIPSQAPWDMWNRDHKHGLKLYVQRVFIMDD----AEQFMPN-----YLRFVRGLID 326 (559)
T ss_dssp SSCEEEEEEECCCS-SSCEEEEEEEESSCCTTCSSSSCCCCEEEEETTEEEEEE----EGGGSCG-----GGTTCEEEEE
T ss_pred hhcCeEEEEeccCC-ceEEEEEEEcCCcCcchhhhhcccCCeEEEEcCEEeecc----hhhhChH-----hHhheeEeeC
Confidence 23567777776553 4789999988862 2 3466799999999 4433 2666654 233444 99
Q ss_pred CceEEEeecCCCcceeecchhhHHHHHHHHHHH
Q psy1955 266 PKNVDVNVHPTKHEVHFLHEDTIIERVQSMLEK 298 (512)
Q Consensus 266 p~~iDVNvhP~K~eV~f~~~~~I~~~I~~~l~~ 298 (512)
|..+|+||. ||.. .++.++..|++.|.+
T Consensus 327 s~dlplNVS---RE~l--q~~~~l~~I~~~l~k 354 (559)
T 1y4s_A 327 SSDLPLNVS---REIL--QDSTVTRNLRNALTK 354 (559)
T ss_dssp ESSSCTTCC---TTGG--GGCHHHHHHHHHHHH
T ss_pred hhhCCCeeC---chhh--hhhHHHHHHHHHHHH
Confidence 999999996 6654 345555555555444
No 15
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=99.78 E-value=7.7e-19 Score=182.53 Aligned_cols=190 Identities=13% Similarity=0.201 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHhcC---C-CCcceeecceeeEEEEEccCceeeEeecCCCCCCCcch--------hhhhhhc-cccCCcc
Q psy1955 289 IERVQSMLEKTLLG---S-NTSRVFYTQSTSIQVTVKQGGLKLLQIQDNGTGIRKED--------MDIVCER-FTTSKLT 355 (512)
Q Consensus 289 ~~~I~~~l~~~l~~---~-~~~r~~~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~--------l~~~~~~-~~TSKi~ 355 (512)
...|++.|.|++++ + .+. |+|.+...| .++|.|||+||+.++ +..+..+ |++||++
T Consensus 33 ~~lv~ElvdNsiD~a~~g~a~~---------I~V~i~~~g--~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhagsKf~ 101 (390)
T 1s16_A 33 NHLGQEVIDNSVDEALAGHAKR---------VDVILHADQ--SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFS 101 (390)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSE---------EEEEECTTS--CEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEESCSS
T ss_pred HHHHHHHHHHHHHHHhcCCCCE---------EEEEEecCC--EEEEEECCCCcCcccccccCcchhhheeeeecccCCcC
Confidence 45667777777766 3 322 777887665 799999999999988 5554444 9999997
Q ss_pred ccccccccccccccchhhhhHhhhc-ceEEEEecCCCCCceEEEEecCcccccccccC----CCCCceEEehhhcccchh
Q psy1955 356 QFEDLNSISTFGFRGEALASISHVA-HLTIITKTKTSPCAYRASYIDSKLKDPIKPCA----GNQGTQIIAEDLFYNIPT 430 (512)
Q Consensus 356 ~~~dl~~~~t~GfRGeALaSi~~~s-~l~I~T~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~GTtV~V~~lF~n~Pv 430 (512)
+ |...+ |.||||++|++++++| .++|+|+..+ .+|+..|.+|....+..+.. .+.||+|+++ |.
T Consensus 102 ~--~~~~~-sgGl~GvGls~vnalS~~l~v~~~r~g--~~~~~~~~~G~~~~~~~~~g~~~~~~~GT~V~f~------Pd 170 (390)
T 1s16_A 102 N--KNYQF-SGGLHGVGISVVNALSKRVEVNVRRDG--QVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFW------PD 170 (390)
T ss_dssp S--SSCSS-CSCCSSCHHHHHHHTEEEEEEEEEETT--EEEEEEEETTEEEEEEEEEEECCTTCCEEEEEEE------EC
T ss_pred C--Ccccc-cCCccccchHHHHHhhcccEEEEEECC--cEEEEEEeCCcccccceecccccCCCCceEEEEE------EC
Confidence 5 55555 9999999999999999 5999999754 57888898886543222221 2789999986 99
Q ss_pred hhcccCCChHHHHHHHHHHHHHhhcCCCeEEEEEECCcc-ceeeecCCCCCHHHHHHhhcChh--hhccceeeecc
Q psy1955 431 RRKALKQPSEEYNKIADVVSRYAVHNPHVGFTLKKQNEN-LADIRTNVNSSHSEVIGNIYGNN--ISRRVRRFSSA 503 (512)
Q Consensus 431 Rrk~~~~~~~e~~~i~~~l~~yaL~~p~v~f~l~~~~~~-~~~~~~~~~~s~~~~i~~ifG~~--~~~~l~~~~~~ 503 (512)
|++| ++...++..|.+.|+++|+.+|+|+|+|.++... ...|...+ .+.+.+..++|.. +...++.++.+
T Consensus 171 ~~~F-~~~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~~~~~~~f~~~g--Gl~~~v~~l~~~~~~~~~~~i~~~~~ 243 (390)
T 1s16_A 171 ETFF-DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQD--GLNDYLAEAVNGLPTLPEKPFIGNFA 243 (390)
T ss_dssp GGGS-SCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTTTEEEEECCSS--CHHHHHHHHHTTSCCEEEEEEEEEEE
T ss_pred cccc-CcccccHHHHHHHHHHHHhcCCCcEEEEEeCCCceeEEEEcCC--cHHHHHHHHhCCCcccCCCcEEEEEe
Confidence 9888 6666788899999999999999999999998732 12354443 4999999998753 33455555544
No 16
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=99.77 E-value=5.5e-20 Score=200.40 Aligned_cols=267 Identities=17% Similarity=0.192 Sum_probs=162.1
Q ss_pred ccccChHHHHHHhcCCcccCHHHHHHHHHHccccCC----------------CC--eEEEEEEeCCeeeEEEEeCCCCCC
Q psy1955 7 IKKLDETVVNRIAAGEVIQRPANALKELLENSLDAK----------------ST--SIQVTVKQGGLKLLQIQDNGTGIR 68 (512)
Q Consensus 7 i~~l~~~~~~~i~s~~~i~~~~~~v~eLv~Ns~dA~----------------a~--~i~i~~~~~~~~~i~v~DnG~Gi~ 68 (512)
+++|-+-.++. ...++..+|+|||+||+||+ |+ .|.|.++.++ ..|+|.|||+||+
T Consensus 13 i~~Ll~ll~~~-----lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~~~-~~I~I~DnGiGMt 86 (624)
T 2ioq_A 13 VKQLLHLMIHS-----LYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDK-RTLTISDNGVGMT 86 (624)
T ss_dssp --CCHHHHHHH-----HSSCTTHHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTT-TEEEEEECSCCCC
T ss_pred HHHHHHHHHHh-----cCCChHHHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeCCC-cEEEEEECCCCCC
Confidence 44444444443 44578899999999999998 54 5677766655 5699999999999
Q ss_pred HHhHHHHHhhcccCCCCCc----c--ccccccccCCcchhhhhhhccc-eEEEEEecCC--CCceEEEEeee-hhhhhhh
Q psy1955 69 KEDMDIVCERFTTSKLTQF----E--DLNSISTFGFRGEALASISHVA-HLTIITKTKT--SPCAYRWCTYL-ADLMALA 138 (512)
Q Consensus 69 ~~~~~~~~~~~~tsK~~~~----~--d~~~~~~~G~rGeaL~si~~~s-~l~i~S~~~~--~~~~~~~~~~~-~dl~~~~ 138 (512)
++++...+.++++|+...| . +......+|++|+|++|+..+| +|+|.||+.+ +..||.| ... ...
T Consensus 87 ~edl~~~l~tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w-~s~g~~~---- 161 (624)
T 2ioq_A 87 RDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFW-ESAGEGE---- 161 (624)
T ss_dssp HHHHHHHHHHHCC---------------CCTTHHHHHHHHHHHHHHHEEEEEEEEECTTSCGGGEEEE-EECSSSC----
T ss_pred HHHHHHHHHhhcccccHHHHHHhcccccccccccCCCCccHHHHHhcCCeEEEEECCCCCCCCeeEEE-EEeCCCe----
Confidence 9999998889999975443 1 1345678999999999999999 6999999987 4678887 333 111
Q ss_pred hcccch-hhhH----hhhcCCcHHH---HHhhhhhc--------ccCeEEE--------------ecCC-cceeecCccC
Q psy1955 139 LMEMSQ-YLQR----DKEQIGDKEE---KQWYRTVE--------HTLVPLM--------------KSQY-QPSEKIVERA 187 (512)
Q Consensus 139 F~n~Pv-~~~R----rk~lks~~~E---~~ki~~lv--------~p~Vs~~--------------~~~~-~~~~~t~~~s 187 (512)
|.-.|+ =..| .=.|+....| ..+|.++| +| |.|. ..++ ...|..+...
T Consensus 162 ~~i~~~~~~~~GT~I~L~Lk~d~~Efl~~~~i~~ivkkys~fi~~P-I~~~~~e~~~~~~~~~~~~in~~~~lw~~~~~~ 240 (624)
T 2ioq_A 162 YTVADITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALP-VEIEKREEKDGETVISWEKINKAQALWTRNKSE 240 (624)
T ss_dssp CEEEEECCSSSEEEEEEEECTTCGGGGCHHHHHHHHHHHHTTCSSC-EEEEEEEECSSCEEEEEEECCCCSCTTTSCTTT
T ss_pred EEEEECCCCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCc-eEEeeccccccccccceEEEeCCccceEecCcc
Confidence 211111 0000 0012322222 34455554 77 8882 2222 2344433223
Q ss_pred hHH-HH---HHH----HhhcceEeeecCCcccEEEEEEEecCcc------c-CCCceEEEEEeCc-hHHHHHHHHhhcCC
Q psy1955 188 CLL-EI---ASL----NNLELLSVEGTDDAFQLKVTGWITNVNF------S-TKKMTFLLFINNP-IKRMIEQVYSIYLP 251 (512)
Q Consensus 188 ~~~-~i---~~~----~~~~l~~i~~~~~~~~~~v~G~is~p~~------~-~~r~~q~lfVNgR-i~k~I~~~Y~~~l~ 251 (512)
+.+ .+ ... +...|..+....++ .+.+.|++..|.. . ..+..+++|||+| |..-. ++++|
T Consensus 241 i~~e~y~~fy~~~~~d~~~~l~~ih~~~eg-~~~~~gll~~P~~~p~~~~~r~~~~~i~lyvn~v~I~d~~----~~llP 315 (624)
T 2ioq_A 241 ITDEEYKEFYKHIAHDFNDPLTWSHNRVEG-KQEYTSLLYIPSQAPWDMWNRDHKHGLKLYVQRVFIMDDA----EQFMP 315 (624)
T ss_dssp CCHHHHHHHHHHHHTCCSCCSCCEEEEEES-SSCEEEEEECCSSCCGGGSSSSCCCCEEEEESSCEEEEEE----CSSSC
T ss_pred chHHHHHHHHHhhccchhcCeEEEEecccc-eEEEEEEEEeCCcCccchhhhcccCCeEEEECCEEeecch----hccch
Confidence 332 22 232 23557666665442 4789999998872 2 3466799999999 44322 66776
Q ss_pred CCCCeEEEEEeeCCCceEEEeecCCCcceeecchhhHHHHHHHHHHH
Q psy1955 252 KGSFPFVYLSLCMDPKNVDVNVHPTKHEVHFLHEDTIIERVQSMLEK 298 (512)
Q Consensus 252 ~~~~P~~~L~i~ipp~~iDVNvhP~K~eV~f~~~~~I~~~I~~~l~~ 298 (512)
.. +.++..-|||..+|+||. ||.. .++.++..|++.|.+
T Consensus 316 ~~---l~fv~gvVDs~dl~lNVS---RE~L--Q~~~~l~~I~~~l~k 354 (624)
T 2ioq_A 316 NY---LRFVRGLIDSSDLPLNVS---REIL--QDSTVTRNLRNALTK 354 (624)
T ss_dssp TT---STTCEEEEEESSSCTTCC---HHHH--HHSSHHHHHHHHHHH
T ss_pred hh---hhhEEEEECHhhCCCccC---chhh--hhhHHHHHHHHHHHH
Confidence 52 112333399999999995 6654 344555555554444
No 17
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=99.77 E-value=2.5e-18 Score=178.67 Aligned_cols=192 Identities=15% Similarity=0.235 Sum_probs=146.5
Q ss_pred hHHHHHHHHHHHHhcC---C-CCcceeecceeeEEEEEccCceeeEeecCCCCCCCcchh--------h-hhhhccccCC
Q psy1955 287 TIIERVQSMLEKTLLG---S-NTSRVFYTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDM--------D-IVCERFTTSK 353 (512)
Q Consensus 287 ~I~~~I~~~l~~~l~~---~-~~~r~~~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l--------~-~~~~~~~TSK 353 (512)
-+...|++.|.|++++ + .+. |+|.+...| .++|.|||+||+.++. . .++..|++||
T Consensus 34 gl~~lv~ElvdNsiDea~~g~a~~---------I~V~i~~~g--~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lhagsK 102 (391)
T 1ei1_A 34 GLHHMVFEVVDNAIDEALAGHCKE---------IIVTIHADN--SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGK 102 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCE---------EEEEECTTS--CEEEEECSSCCCCSBCTTTSSBHHHHHHHSTTEESC
T ss_pred CHHHHHHHHHHhHHHHHhcCCCCE---------EEEEEeCCC--EEEEEECCCCcccCcccccCcchHHHhheeccccCC
Confidence 5677888888888887 3 322 778887665 7999999999999884 2 2456899999
Q ss_pred ccccccccccccccccchhhhhHhhhc-ceEEEEecCCCCCceEEEEecCccccccc--ccCCCCCceEEehhhcccchh
Q psy1955 354 LTQFEDLNSISTFGFRGEALASISHVA-HLTIITKTKTSPCAYRASYIDSKLKDPIK--PCAGNQGTQIIAEDLFYNIPT 430 (512)
Q Consensus 354 i~~~~dl~~~~t~GfRGeALaSi~~~s-~l~I~T~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~GTtV~V~~lF~n~Pv 430 (512)
+++ |...+ |.||||++|++++++| .++|+|+..+ .+|+..|.+|....+.. ....+.||+|+++ |.
T Consensus 103 f~~--~~~~v-SgGl~GvGls~vnalS~~l~v~~~r~g--~~~~~~~~~G~~~~~l~~~~~~~~~GT~V~f~------Pd 171 (391)
T 1ei1_A 103 FDD--NSYKV-SGGLHGVGVSVVNALSQKLELVIQREG--KIHRQIYEHGVPQAPLAVTGETEKTGTMVRFW------PS 171 (391)
T ss_dssp SSS--SSCSS-CSCCSSCHHHHHHHTEEEEEEEEEETT--EEEEEEEETTEESSCCEEEEECSCCEEEEEEE------EC
T ss_pred cCC--Ccccc-cCCccccchHHHHHhcCeEEEEEEeCC--cEEEEEEcCCcccccceeccCcCCCccEEEEE------EC
Confidence 975 55555 9999999999999999 5999998754 57888898886543221 1236899999986 99
Q ss_pred hhcccCC-ChHHHHHHHHHHHHHhhcCCCeEEEEEECCcc-ceeeecCCCCCHHHHHHhhcChh--hhccceeeecc
Q psy1955 431 RRKALKQ-PSEEYNKIADVVSRYAVHNPHVGFTLKKQNEN-LADIRTNVNSSHSEVIGNIYGNN--ISRRVRRFSSA 503 (512)
Q Consensus 431 Rrk~~~~-~~~e~~~i~~~l~~yaL~~p~v~f~l~~~~~~-~~~~~~~~~~s~~~~i~~ifG~~--~~~~l~~~~~~ 503 (512)
|++| +. ..-++..|.+.|+++|+.+|.|+|.|.++... ...|...+ .+.+.+..+.|.. +...++.++.+
T Consensus 172 ~~~F-~~~~~~e~~~l~~rlr~lA~lnpgv~i~l~d~~~~~~~~f~~~g--Gl~~~v~~l~~~~~~~~~~~i~~~~~ 245 (391)
T 1ei1_A 172 LETF-TNVTEFEYEILAKRLRELSFLDSGVSIRLRDKRDGKEDHFHYEG--GIKAFVEYLNKNKTPIHPNIFYFSTE 245 (391)
T ss_dssp TTTC-CSCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTTCCEEEECCCS--HHHHHHHHHHHTSCBSSSCCEEEEEE
T ss_pred hhhh-CCccccCHHHHHHHHHHhcccCCCcEEEEEcCCCcceEEEEcCc--hHHHHHHHHcCCCcccccccEEEEEe
Confidence 9888 66 66678899999999999999999999998732 12354443 3888888887655 44455665543
No 18
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=99.74 E-value=1.1e-17 Score=172.64 Aligned_cols=190 Identities=8% Similarity=0.040 Sum_probs=146.4
Q ss_pred hhHHHHHHHHHHHHhcC----CCCcceeecceeeEEEEEccCceeeEeecCCCCCCCcchhhhhhhccccCCcccccccc
Q psy1955 286 DTIIERVQSMLEKTLLG----SNTSRVFYTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLN 361 (512)
Q Consensus 286 ~~I~~~I~~~l~~~l~~----~~~~r~~~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~~~~~~~TSKi~~~~dl~ 361 (512)
.-+...|++.|+|++++ ..+. |+|.+...| .++|.|||+||+. +++. ..|+|||+++.+ +
T Consensus 29 ~gl~~~v~ElvdNsiDe~~~g~a~~---------I~V~i~~~g--~I~V~DnGrGIp~-e~v~--~lhagsKf~~~~-~- 92 (369)
T 3cwv_A 29 YGLHHLVYFLLDVAYEEARRGECRD---------VVLEVGGDG--SIALFCTSRTVTA-ENLV--RVATGAGFLGRP-P- 92 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSE---------EEEEECTTS--CEEEEEEESSCCH-HHHH--HHHTTTTGGGSS-C-
T ss_pred chHHHHHHHHHhhhHhHHhhCCCCE---------EEEEEeCCC--EEEEEECCCCcCH-hHee--eeecCCCcCCCc-c-
Confidence 56678899999999987 3332 778888766 7999999999999 5554 899999998765 1
Q ss_pred ccccccccchhhhhHhhhc-ceEEEEecCCCCCceEEEEecCcc------ccccccc--CCCCCceEEehhhcccchhhh
Q psy1955 362 SISTFGFRGEALASISHVA-HLTIITKTKTSPCAYRASYIDSKL------KDPIKPC--AGNQGTQIIAEDLFYNIPTRR 432 (512)
Q Consensus 362 ~~~t~GfRGeALaSi~~~s-~l~I~T~~~~~~~~~~~~~~~~~~------~~~~~~~--~~~~GTtV~V~~lF~n~PvRr 432 (512)
..+|+++| .|+|++++| .++|+|+..+ .+|+..|.+|.. ..+..+. ..+.||+|+++ |.|+
T Consensus 93 -~~~y~vsG-Gls~vnalSs~l~v~t~r~g--~~~~~~~~~G~~~~~~~~~~~l~~~g~~~~~GT~V~f~------Pd~~ 162 (369)
T 3cwv_A 93 -GDGWGWDS-MLVVSLALSSRYQVDIWADG--RQWRVMGEHGHPQGEGAAVTPMEPMPVSAERGVRVHFV------PDAT 162 (369)
T ss_dssp -CCSTTTTS-SHHHHHHTEEEEEEEEEETT--EEEEEEEETTEECTTCEEESSCCCCSSCCSEEEEEEEE------ECTT
T ss_pred -cccccccC-HHHHHHHhhceEEEEEEECC--CEEEEEEeCCcccccccccCCceEecccCCCCCEEEEE------ECHH
Confidence 14567777 799999997 6999999765 378888988865 3322332 26899999997 9999
Q ss_pred cccCCChHHHHHHHHHHHHHhhcCCCeEEEEEECCcc-ceeeecCCCCCHHHHHHhhcChh--hhccceeeeccc
Q psy1955 433 KALKQPSEEYNKIADVVSRYAVHNPHVGFTLKKQNEN-LADIRTNVNSSHSEVIGNIYGNN--ISRRVRRFSSAS 504 (512)
Q Consensus 433 k~~~~~~~e~~~i~~~l~~yaL~~p~v~f~l~~~~~~-~~~~~~~~~~s~~~~i~~ifG~~--~~~~l~~~~~~~ 504 (512)
+| ++...++..|.+.|+++|+.+|.|+|+|.++... ...|...+ .+.+.+..++|.. +...++.++.+.
T Consensus 163 ~F-~~~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~~~~~~~f~~~g--Gl~~~v~~l~~~~~~~~~~~i~~~~~~ 234 (369)
T 3cwv_A 163 IF-EVLAFDRARLSRRCNELAALAPGLRVSFADLQRGERTLWHLPG--GVAQWAHVLTEARPQLHPEPVVFDFTW 234 (369)
T ss_dssp TC-SCCCCCHHHHHHHHHHHHHHSTTCEEEEEETTTTEEEEEECTT--HHHHHHHHHHTTSCBSSSSCEEEEEEE
T ss_pred Hh-CCccccHHHHHHHHHHHcCcCCCcEEEEEeCCCCeeEEEEeCc--hHHHHHHHHhcCCcccCCCcEEEEEec
Confidence 88 7777788999999999999999999999998721 12355543 3999999999865 555666666543
No 19
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=99.69 E-value=9.7e-18 Score=161.70 Aligned_cols=153 Identities=22% Similarity=0.255 Sum_probs=117.8
Q ss_pred HHHHHHHHHhcCCCCccee---------ecceeeEEEEEccCceeeEeecCCCCCCCcchhhhhhhccccCCcccccc-c
Q psy1955 291 RVQSMLEKTLLGSNTSRVF---------YTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFED-L 360 (512)
Q Consensus 291 ~I~~~l~~~l~~~~~~r~~---------~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~~~~~~~TSKi~~~~d-l 360 (512)
.|+++|+|+++|.+..+.. ....+.|.|.+.. +...+.|.|||+||+++++.....+|++||..+|.| +
T Consensus 36 ~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d~-~~~~i~V~DnG~GMs~edl~~~l~~ia~S~~~~f~~~l 114 (228)
T 3t0h_A 36 FLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNK-QDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEAL 114 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEET-TTTEEEEEECSCCCCHHHHHTGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEeC-CeeEEEEEeCCCCCCHHHHHHHHHhhccccchhhhhhh
Confidence 4899999999987542210 0012235666543 456799999999999999999999999999988755 4
Q ss_pred ---cccccccccchhhhhHhhhc-ceEEEEecCCCCCceEEEEecCccc--ccccccCCCCCceEEehhhcccchhhhcc
Q psy1955 361 ---NSISTFGFRGEALASISHVA-HLTIITKTKTSPCAYRASYIDSKLK--DPIKPCAGNQGTQIIAEDLFYNIPTRRKA 434 (512)
Q Consensus 361 ---~~~~t~GfRGeALaSi~~~s-~l~I~T~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~GTtV~V~~lF~n~PvRrk~ 434 (512)
....++||||++|+|++.+| .++|+||+.+ ..+|+|...+++.. .+..+.+.++||+|+|+
T Consensus 115 ~~~~~~~~iG~fG~G~~S~~~vad~v~V~Sr~~~-~~~~~w~~~g~~~~~v~~~~~~~~~~GT~I~v~------------ 181 (228)
T 3t0h_A 115 QAGADISMIGQFGVGFYSAYLVAEKVTVITKHND-DEQYAWESSAGGSFTVRTDTGEPMGRGTKVILH------------ 181 (228)
T ss_dssp HTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTT-SCEEEEEECSTTEEEEEECCSSCCSSEEEEEEE------------
T ss_pred cccCCcccCCCCChhHHHHhccCCEEEEEEecCC-CCcEEEEEcCCceEEEeecCCCCCCCCcEEEEE------------
Confidence 46789999999999999999 7999999986 46888877766432 11123467899999997
Q ss_pred cCCChHHH---HHHHHHHHHHh--hcCC
Q psy1955 435 LKQPSEEY---NKIADVVSRYA--VHNP 457 (512)
Q Consensus 435 ~~~~~~e~---~~i~~~l~~ya--L~~p 457 (512)
+|....|+ .+|+++|.+|| |.||
T Consensus 182 Lk~~~~E~~e~~~i~~iv~~~a~~l~~P 209 (228)
T 3t0h_A 182 LKEDQTEYLEERRIKEIVKKHSQFIGYP 209 (228)
T ss_dssp ECGGGGGGGSHHHHHHHHHHHSTTCSSC
T ss_pred ECCchhhhhhHHHHHHHHHHHHhhCCCC
Confidence 66555555 78999999999 8886
No 20
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=99.68 E-value=6.2e-17 Score=168.40 Aligned_cols=253 Identities=16% Similarity=0.138 Sum_probs=169.0
Q ss_pred ccccccChHHHHHHhcCCcc-----cCHHHHHHHHHHccccCC----CCeEEEEEEeCCeeeEEEEeCCCCCCHHhHHH-
Q psy1955 5 PKIKKLDETVVNRIAAGEVI-----QRPANALKELLENSLDAK----STSIQVTVKQGGLKLLQIQDNGTGIRKEDMDI- 74 (512)
Q Consensus 5 ~~i~~l~~~~~~~i~s~~~i-----~~~~~~v~eLv~Ns~dA~----a~~i~i~~~~~~~~~i~v~DnG~Gi~~~~~~~- 74 (512)
..|+.|..--.-+.+.|..| ..+..+|.|||+||+|+. ++.|.|.++.++ .|+|.|||+||++++++.
T Consensus 6 ~~i~~l~~le~vr~rpgmyiGs~~~~g~~~~v~Elv~N~iD~a~~~~~~~I~V~i~~~~--~i~V~DnG~GIp~~~~~~~ 83 (390)
T 1kij_A 6 SAIRVLKGLEGVRHRPAMYIGGTGVEGYHHLFKEILDNAVDEALAGYATEILVRLNEDG--SLTVEDNGRGIPVDLMPEE 83 (390)
T ss_dssp -CCEECCTTHHHHHCTHHHHSCSSHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEECTTS--CEEEEECSSCCCCSEETTT
T ss_pred HHCEEcchhHHHhcCCCcEEccCCcchHHHHHHHHHHHHHHHhhhCCCCEEEEEEEcCC--EEEEEEcCCCCCHHHhhhc
Confidence 34788887666677777777 667889999999999986 999999997665 699999999999998754
Q ss_pred -------HHhh-cccCCCCCccccccccccCCcchhhhhhhccce-EEEEEecCCCCceEEEEeeehh-----h------
Q psy1955 75 -------VCER-FTTSKLTQFEDLNSISTFGFRGEALASISHVAH-LTIITKTKTSPCAYRWCTYLAD-----L------ 134 (512)
Q Consensus 75 -------~~~~-~~tsK~~~~~d~~~~~~~G~rGeaL~si~~~s~-l~i~S~~~~~~~~~~~~~~~~d-----l------ 134 (512)
+|.+ |.++|+.. +... .+.|++|++|+++.++|+ ++|.|+..+ .+|++ .|... +
T Consensus 84 ~~~~~e~if~~~~~~~kf~~--~~~~-~s~G~~G~Gls~v~als~~~~v~t~~~g--~~~~~-~~~~G~~~~~~~~~~~~ 157 (390)
T 1kij_A 84 GKPAVEVIYNTLHSGGKFEQ--GAYK-VSGGLHGVGASVVNALSEWTVVEVFREG--KHHRI-AFSRGEVTEPLRVVGEA 157 (390)
T ss_dssp TEEHHHHHHHSSCEESGGGG--SSCC-CCSCSSTTSHHHHHHTEEEEEEEEEETT--EEEEE-EEETTEEEEEEEEEEEC
T ss_pred cccchhhheeeeeecccccC--cccc-ccCCCCCcceeeecccccceEEEEecCC--cEEEE-EEcCCcccccceeeccc
Confidence 7764 56677532 2222 378999999999999995 999999643 46666 55411 1
Q ss_pred ------hhhhhcccchhhhHhhhcCCcHHHHHhhhhhc------ccCeEEEecCCc----ceeecCccChHHHHHHH---
Q psy1955 135 ------MALALMEMSQYLQRDKEQIGDKEEKQWYRTVE------HTLVPLMKSQYQ----PSEKIVERACLLEIASL--- 195 (512)
Q Consensus 135 ------~~~~F~n~Pv~~~Rrk~lks~~~E~~ki~~lv------~p~Vs~~~~~~~----~~~~t~~~s~~~~i~~~--- 195 (512)
....|. |. |++| ++...++..|.+.+ +|+|.|...++. ..|..+ +.+.+.+...
T Consensus 158 ~~~~~GT~V~f~--Pd---~~~F-~~~~~~~~~l~~rl~~~A~lnpgv~i~l~d~~~~~~~~f~~~-~Gl~~~v~~l~~~ 230 (390)
T 1kij_A 158 PRGKTGTRVTFK--PD---PEIF-GNLRFDPSKIRARLREVAYLVAGLKLVFQDRQHGKEEVFLDK-GGVASFAKALAEG 230 (390)
T ss_dssp GGGCCEEEEEEE--EC---HHHH-TTCCCCHHHHHHHHHHHHHHTTTCEEEEEEGGGTEEEEECCT-THHHHHHHHHTTT
T ss_pred cCCCCCcEEEEE--EC---hHHh-CCccccHHHHHHHHHHhcCcCCCcEEEEEeCCCcceEEEEcC-CcHHHHHHHHhCC
Confidence 111243 66 7776 55544555555555 999987776543 345444 3466666521
Q ss_pred ---HhhcceEeeecCCcccEEEEEEEecCcccCCCceEEEEEeCc-----------hHHHHHHHHhhcC------CCC--
Q psy1955 196 ---NNLELLSVEGTDDAFQLKVTGWITNVNFSTKKMTFLLFINNP-----------IKRMIEQVYSIYL------PKG-- 253 (512)
Q Consensus 196 ---~~~~l~~i~~~~~~~~~~v~G~is~p~~~~~r~~q~lfVNgR-----------i~k~I~~~Y~~~l------~~~-- 253 (512)
+..+++.++.+.+ ++.+++.+.... ..+..|+.|||+| ++.++.++.+.|. ++.
T Consensus 231 ~~~~~~~~i~~~~~~~--~i~ve~a~~~~~--~~~~~~~sFvN~i~t~~GGTH~~g~~~alt~~i~~~~~~~~l~k~~~~ 306 (390)
T 1kij_A 231 EDLLYEKPFLIRGTHG--EVEVEVGFLHTQ--GYNAEILTYANMIPTRDGGTHLTAFKSAYSRALNQYAKKAGLNKEKGP 306 (390)
T ss_dssp SCBSCSSCEEEEEEET--TEEEEEEEEEBS--SSCCEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCCCSSSC
T ss_pred CCcCCCCcEEEEeecC--CeEEEEEEEecC--CCCceEEEEEcCeeeCCCCchhHHHHHHHHHHHHHHHHHhCccccccC
Confidence 2335666666555 588999887532 2356799999999 5555555554443 111
Q ss_pred --------CCeEEEEEeeCCCceEEEeecCCCcc
Q psy1955 254 --------SFPFVYLSLCMDPKNVDVNVHPTKHE 279 (512)
Q Consensus 254 --------~~P~~~L~i~ipp~~iDVNvhP~K~e 279 (512)
..=.+++++.+|.-.++ -.+|..
T Consensus 307 ~l~~~dvregl~avisvki~~P~Fe---gQTK~k 337 (390)
T 1kij_A 307 QPTGDDLLEGLYAVVSVKLPNPQFE---GQTKGK 337 (390)
T ss_dssp CCCTTTTTTTEEEEEEEECSSCCBC---STTCCS
T ss_pred CcCHHHHhhhcEEEEEeecCCCccc---cccccc
Confidence 12367888888655443 345554
No 21
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=99.67 E-value=1.4e-17 Score=182.19 Aligned_cols=253 Identities=14% Similarity=0.225 Sum_probs=139.0
Q ss_pred cccCHHHHHHHHHHccccCC----------------CC--eEEEEEEeCCeeeEEEEeCCCCCCHHhHHHHHhhcccC--
Q psy1955 23 VIQRPANALKELLENSLDAK----------------ST--SIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTS-- 82 (512)
Q Consensus 23 ~i~~~~~~v~eLv~Ns~dA~----------------a~--~i~i~~~~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~ts-- 82 (512)
...++..+|+|||+||+||+ |+ .|.|.++.++ ..|+|.|||+||+++++...+.++++|
T Consensus 42 LYsn~eifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~~~-~~I~I~DnGiGMt~edl~~~l~tIA~SGt 120 (666)
T 2o1u_A 42 LYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEK-NLLHVTDTGVGMTREELVKNLGTIAKSGT 120 (666)
T ss_dssp TSSSCTTHHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETTT-TEEEEEECSCCCCHHHHHHHTTC------
T ss_pred ccCCchHHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeCCC-CEEEEEECCCCCCHHHHHHHHhhhccccc
Confidence 44677889999999999998 54 5666666555 569999999999999999988888888
Q ss_pred -----CCCCc-----cccccccccCCcchhhhhhhccceEEEEEecCCCCceEEEEeeehhhhhhhhcccchh----hhH
Q psy1955 83 -----KLTQF-----EDLNSISTFGFRGEALASISHVAHLTIITKTKTSPCAYRWCTYLADLMALALMEMSQY----LQR 148 (512)
Q Consensus 83 -----K~~~~-----~d~~~~~~~G~rGeaL~si~~~s~l~i~S~~~~~~~~~~~~~~~~dl~~~~F~n~Pv~----~~R 148 (512)
|+... .|...++.||+++.+++++| .+|+|.||+.++ .+|.| .....- |.-.|.- ..|
T Consensus 121 k~f~~kl~~~~~~~~~d~~~IGqFGvGfySaf~vA--dkV~V~Sr~~~~-~~~~W-~s~gg~----~ti~~~~~~~~~~~ 192 (666)
T 2o1u_A 121 SEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVA--DKVIVTSKHNND-TQHIW-ESDSNE----FSVIADPRGNTLGR 192 (666)
T ss_dssp -------------------------CTTGGGGGTE--EEEEEEEECTTS-CCEEE-EESSSC----CEEEECTTCCSSSS
T ss_pred HHHHHHhhhcccccccchhhccCCCcHHHhHHHhc--CEEEEEEeeCCC-ceEEE-EEeCCe----EEEEecccCCCCCC
Confidence 65543 46666677777665555544 479999999864 57777 332111 2111110 000
Q ss_pred ----hhhcCCcHHH---HHhhhhhc--------ccCeEEEe---------------cCC-cceeecCccChHH-HHH---
Q psy1955 149 ----DKEQIGDKEE---KQWYRTVE--------HTLVPLMK---------------SQY-QPSEKIVERACLL-EIA--- 193 (512)
Q Consensus 149 ----rk~lks~~~E---~~ki~~lv--------~p~Vs~~~---------------~~~-~~~~~t~~~s~~~-~i~--- 193 (512)
.=.|+....| ..+|.++| +| |.|.. .++ ...|..+...+.+ .+.
T Consensus 193 GT~I~L~Lk~d~~Efle~~~I~~ivkkys~fi~~P-I~~~~~~~~~~~~~~~~~~~iN~~~~lw~~~~~~i~~eey~~fy 271 (666)
T 2o1u_A 193 GTTITLVLKEEASDYLELDTIKNLVKKYSQFINFP-IYVWSSKTGGGGKTVWDWELMNDIKPIWQRPSKEVEDDEYKAFY 271 (666)
T ss_dssp EEEEEEEECTTTTTSSSTTHHHHHHHHHSTTCCSC-EEEEECC-------CCEEEECSCCSCTTTSCTTTCCHHHHHHHH
T ss_pred CeEEEEEEccchhhhccHHHHHHHHHHHHhhCCCc-eEEeccccccccccccceEEEecCccccccCcccccHHHHHHHH
Confidence 0012322222 34444444 67 77732 121 2333332112222 222
Q ss_pred H----HHhhcceEeeecCCcccEEEEEEEecCc------ccC----CCceEEEEEeCc-hHHHHHHHHhhcCCCCCCeEE
Q psy1955 194 S----LNNLELLSVEGTDDAFQLKVTGWITNVN------FST----KKMTFLLFINNP-IKRMIEQVYSIYLPKGSFPFV 258 (512)
Q Consensus 194 ~----~~~~~l~~i~~~~~~~~~~v~G~is~p~------~~~----~r~~q~lfVNgR-i~k~I~~~Y~~~l~~~~~P~~ 258 (512)
. .+...|..+....++ .+.+.|++..|. +.. .+..+++|||+| |..-. ++++|. | +.
T Consensus 272 ~~~~~d~~~pl~~ih~~~eg-~~~~~gll~iP~~~p~d~~~~~~~~~~~~i~LYVn~vfI~d~~----~~llP~--~-l~ 343 (666)
T 2o1u_A 272 KSFSKESDDPMAYIHFTAEG-EVTFKSILFVPTSAPRGLFDEYGSKKSDYIKLYVRRVFITDDF----HDMMPK--Y-LN 343 (666)
T ss_dssp HHTTCTTSCCSEEEEEEECS-SSCEEEEEEECSSCCC------------CEEEEETTEEEESCC----CTTSCG--G-GT
T ss_pred hhhccccccCeeEEEecccC-cEEEEEEEEcCCCCchhhhhhccccccCCeEEEEcCeEeeCch----hhhhHH--H-HH
Confidence 2 234567777765543 588999998886 332 356789999999 44432 566654 1 21
Q ss_pred EEEeeCCCceEEEeecCCCcceeecchhhHHHHHHHHHHH
Q psy1955 259 YLSLCMDPKNVDVNVHPTKHEVHFLHEDTIIERVQSMLEK 298 (512)
Q Consensus 259 ~L~i~ipp~~iDVNvhP~K~eV~f~~~~~I~~~I~~~l~~ 298 (512)
++.-.|||..+|+||. ||.. .++.++..|++.|.+
T Consensus 344 FvkGvVDs~dLplNVS---RE~L--Q~~~~l~~I~~~l~k 378 (666)
T 2o1u_A 344 FVKGVVDSDDLPLNVS---RETL--QQHKLLKVIRKKLVR 378 (666)
T ss_dssp TCEEEEEESSSCSSSC---HHHH--HTCHHHHHHHHHHHH
T ss_pred HeeeeeCHhhCCCccc---chhh--ccCHHHHHHHHHHHH
Confidence 3444899999999996 6654 344455555544433
No 22
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=99.67 E-value=5.4e-18 Score=163.48 Aligned_cols=118 Identities=28% Similarity=0.358 Sum_probs=92.7
Q ss_pred ccccChHHHHHHhcCCcccCHHHHHHHHHHccccCCCC----------------eEEEEEE-eCCeeeEEEEeCCCCCCH
Q psy1955 7 IKKLDETVVNRIAAGEVIQRPANALKELLENSLDAKST----------------SIQVTVK-QGGLKLLQIQDNGTGIRK 69 (512)
Q Consensus 7 i~~l~~~~~~~i~s~~~i~~~~~~v~eLv~Ns~dA~a~----------------~i~i~~~-~~~~~~i~v~DnG~Gi~~ 69 (512)
|++|.+-.++.|-+ ++..+|+|||+||+||+++ .+.|.+. ..+...|+|.|||+||++
T Consensus 18 i~~ll~ll~~~lYs-----~~~~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d~~~~~i~V~DnG~GMs~ 92 (228)
T 3t0h_A 18 IAQLMSLIINTFYS-----NKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTK 92 (228)
T ss_dssp HHHHHHHHHHSCCS-----CTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCH
T ss_pred HHHHHHHHHHhhcC-----CcHHHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEeCCeeEEEEEeCCCCCCH
Confidence 44555555554444 4578999999999999875 3445542 234557999999999999
Q ss_pred HhHHHHHhhcccCCCCCccc-c---ccccccCCcchhhhhhhccc-eEEEEEecCCCCceEEEEeee
Q psy1955 70 EDMDIVCERFTTSKLTQFED-L---NSISTFGFRGEALASISHVA-HLTIITKTKTSPCAYRWCTYL 131 (512)
Q Consensus 70 ~~~~~~~~~~~tsK~~~~~d-~---~~~~~~G~rGeaL~si~~~s-~l~i~S~~~~~~~~~~~~~~~ 131 (512)
+++...+.++++||...+.| + ....++||||+||+|++.+| +|+|.||+.+ ..||+| ...
T Consensus 93 edl~~~l~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~vad~v~V~Sr~~~-~~~~~w-~~~ 157 (228)
T 3t0h_A 93 ADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHND-DEQYAW-ESS 157 (228)
T ss_dssp HHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTT-SCEEEE-EEC
T ss_pred HHHHHHHHhhccccchhhhhhhcccCCcccCCCCChhHHHHhccCCEEEEEEecCC-CCcEEE-EEc
Confidence 99999999999998766544 4 46789999999999999999 6999999976 568888 554
No 23
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=99.66 E-value=4e-16 Score=149.65 Aligned_cols=160 Identities=16% Similarity=0.228 Sum_probs=119.6
Q ss_pred hhHHHHHHHHHHHHhcC----CCCcceeecceeeEEEEEccCceeeEeecCCCCCCCcchh---------hhhhhccccC
Q psy1955 286 DTIIERVQSMLEKTLLG----SNTSRVFYTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDM---------DIVCERFTTS 352 (512)
Q Consensus 286 ~~I~~~I~~~l~~~l~~----~~~~r~~~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l---------~~~~~~~~TS 352 (512)
.-+...+++.|.|++++ .... |+|.+...| .++|.|||+||+.+.. +.++..|++|
T Consensus 34 ~gl~~lv~ElvdNsiDea~~g~~~~---------I~V~i~~~g--~i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lhag~ 102 (220)
T 4duh_A 34 TGLHHMVFEVVDNAIDEALAGHCKE---------IIVTIHADN--SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG 102 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCE---------EEEEECTTS--CEEEEECSSCCCCSEETTTTEEHHHHHHHSTTCSS
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCE---------EEEEEeCCC--cEEEEECCcCcccccccccCcchhhheeeecccCC
Confidence 45677888888888877 3332 677777654 6999999999999874 2356899999
Q ss_pred CccccccccccccccccchhhhhHhhhc-ceEEEEecCCCCCceEEEEecCccccccc--ccCCCCCceEEehhhcccch
Q psy1955 353 KLTQFEDLNSISTFGFRGEALASISHVA-HLTIITKTKTSPCAYRASYIDSKLKDPIK--PCAGNQGTQIIAEDLFYNIP 429 (512)
Q Consensus 353 Ki~~~~dl~~~~t~GfRGeALaSi~~~s-~l~I~T~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~GTtV~V~~lF~n~P 429 (512)
|+++ +. -..|.||||++|++++++| .++|+++..+ ..|+..|.+|....+.. +...+.||+|++ .|
T Consensus 103 Kfd~--~~-yk~SgGlhGvG~svvNAlS~~l~v~v~r~g--~~~~~~f~~G~~~~~l~~~g~~~~~GT~V~F------~P 171 (220)
T 4duh_A 103 KFDD--NS-YKVSGGLHGVGVSVVNALSQKLELVIQREG--KIHRQIYEHGVPQAPLAVTGETEKTGTMVRF------WP 171 (220)
T ss_dssp CCCT--TC---------CCCHHHHHHTEEEEEEEEEETT--EEEEEEEETTEESSSCEEEEECSCCEEEEEE------EE
T ss_pred CcCC--Cc-cccccCccceecchhcccccceEEEEEECC--EEEEEEecCCcCcCCceeccccCCCCcEEEE------EE
Confidence 9875 22 2369999999999999999 6999998765 45888898886553322 345789999997 49
Q ss_pred hhhcccCCChHHHHHHHHHHHHHhhcCCCeEEEEEECC
Q psy1955 430 TRRKALKQPSEEYNKIADVVSRYAVHNPHVGFTLKKQN 467 (512)
Q Consensus 430 vRrk~~~~~~~e~~~i~~~l~~yaL~~p~v~f~l~~~~ 467 (512)
.+++|.+...-++..+.+.|+.+|+.+|.|+|.|.+..
T Consensus 172 d~~~F~~~~~~~~~~l~~rlrelA~ln~gv~i~l~der 209 (220)
T 4duh_A 172 SLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKR 209 (220)
T ss_dssp CTTTCCSSCSCCHHHHHHHHHHHHHHCTTSEEEEEETT
T ss_pred CHHHhCCcccCCHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 88888765456788899999999999999999998865
No 24
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=99.65 E-value=7.7e-17 Score=157.14 Aligned_cols=157 Identities=20% Similarity=0.190 Sum_probs=117.6
Q ss_pred HHHHHHHHHhcCCCCccee---------ecceeeEEEEEccCceeeEeecCCCCCCCcchhhhhhhccccCCcccccc-c
Q psy1955 291 RVQSMLEKTLLGSNTSRVF---------YTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFED-L 360 (512)
Q Consensus 291 ~I~~~l~~~l~~~~~~r~~---------~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~~~~~~~TSKi~~~~d-l 360 (512)
.|+++|+|+++|.+..|.. ....+.|.|.+.. +...+.|.|||+||+++++.....+|++||..+|.| |
T Consensus 64 flRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~-~~~~I~I~DnG~GMt~edl~~~l~~ia~S~~~~f~~~L 142 (256)
T 3o0i_A 64 FLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNK-QDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEAL 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEET-TTTEEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEcC-CceEEEEecCCCCcCHHHHHHHHHhhccccccchhhhh
Confidence 4899999999987642210 0112336666653 456799999999999999999999999999988755 4
Q ss_pred ---cccccccccchhhhhHhhhc-ceEEEEecCCCCCceEEEEecCccc--ccccccCCCCCceEEehhhcccchhhhcc
Q psy1955 361 ---NSISTFGFRGEALASISHVA-HLTIITKTKTSPCAYRASYIDSKLK--DPIKPCAGNQGTQIIAEDLFYNIPTRRKA 434 (512)
Q Consensus 361 ---~~~~t~GfRGeALaSi~~~s-~l~I~T~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~GTtV~V~~lF~n~PvRrk~ 434 (512)
....++||||++|+|++.+| .|+|+||+.+ ..+|.|...+++.. .+..+.+.++||+|+|+ .|.
T Consensus 143 ~~~~~~~~iG~fG~Gf~S~f~Vadkv~V~Sr~~~-~~g~~w~s~gg~~~~v~~~~~~~~~~GT~I~l~---------LK~ 212 (256)
T 3o0i_A 143 QAGADISMIGQFGVGFYSAYLVAEKVTVITKHND-DEQYAWESSAGGSFTVRTDTGEPMGRGTKVILH---------LKE 212 (256)
T ss_dssp HTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTT-SCEEEEEECSTTEEEEEECCSSCCSSEEEEEEE---------ECG
T ss_pred cccCCccccCCCcchHHHhhccCCeEEEEEcCCC-CceEEEEEeccceEEEeeCCCCCCCCCcEEEEE---------EcC
Confidence 46789999999999999999 7999999986 46888877766432 11223467899999997 233
Q ss_pred cCCChHHHHHHHHHHHHHh--hcCCC
Q psy1955 435 LKQPSEEYNKIADVVSRYA--VHNPH 458 (512)
Q Consensus 435 ~~~~~~e~~~i~~~l~~ya--L~~p~ 458 (512)
.+..-.|..+|+++|++|| |.||-
T Consensus 213 ~~~e~~e~~~I~~iv~k~s~~l~~PI 238 (256)
T 3o0i_A 213 DQTEYLEERRIKEIVKKHSQFIGYPI 238 (256)
T ss_dssp GGGGGGCHHHHHHHHHHHCTTCSSCE
T ss_pred cchhhccHHHHHHHHHHHHhhCCCCe
Confidence 2222234478999999999 98873
No 25
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=99.64 E-value=2.4e-17 Score=160.69 Aligned_cols=117 Identities=29% Similarity=0.356 Sum_probs=91.6
Q ss_pred ccccChHHHHHHhcCCcccCHHHHHHHHHHccccCCCC------------------eEEEEEEeCCeeeEEEEeCCCCCC
Q psy1955 7 IKKLDETVVNRIAAGEVIQRPANALKELLENSLDAKST------------------SIQVTVKQGGLKLLQIQDNGTGIR 68 (512)
Q Consensus 7 i~~l~~~~~~~i~s~~~i~~~~~~v~eLv~Ns~dA~a~------------------~i~i~~~~~~~~~i~v~DnG~Gi~ 68 (512)
|++|.+-.++.|- .+...+|+|||+||+||+++ .|.|..+. +...|+|.|||+||+
T Consensus 46 i~~Ll~ll~~~lY-----s~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~-~~~~I~I~DnG~GMt 119 (256)
T 3o0i_A 46 IAQLMSLIINTFY-----SNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNK-QDRTLTIVDTGIGMT 119 (256)
T ss_dssp HHHHHHHHHHSCC-----SCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEET-TTTEEEEEECSCCCC
T ss_pred HHHHHHHHHHhcc-----CCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEcC-CceEEEEecCCCCcC
Confidence 4444444444443 44578999999999999875 34444444 455799999999999
Q ss_pred HHhHHHHHhhcccCCCCCccc-c---ccccccCCcchhhhhhhccc-eEEEEEecCCCCceEEEEeee
Q psy1955 69 KEDMDIVCERFTTSKLTQFED-L---NSISTFGFRGEALASISHVA-HLTIITKTKTSPCAYRWCTYL 131 (512)
Q Consensus 69 ~~~~~~~~~~~~tsK~~~~~d-~---~~~~~~G~rGeaL~si~~~s-~l~i~S~~~~~~~~~~~~~~~ 131 (512)
++++...+.++++||...+.| + ....++||||+||+|++.+| +|+|.||+.+ ..||.| ...
T Consensus 120 ~edl~~~l~~ia~S~~~~f~~~L~~~~~~~~iG~fG~Gf~S~f~Vadkv~V~Sr~~~-~~g~~w-~s~ 185 (256)
T 3o0i_A 120 KADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHND-DEQYAW-ESS 185 (256)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTT-SCEEEE-EEC
T ss_pred HHHHHHHHHhhccccccchhhhhcccCCccccCCCcchHHHhhccCCeEEEEEcCCC-CceEEE-EEe
Confidence 999999999999998776544 4 46789999999999999999 7999999875 578888 444
No 26
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=99.63 E-value=1.6e-15 Score=157.64 Aligned_cols=103 Identities=22% Similarity=0.328 Sum_probs=87.5
Q ss_pred ccCHHHHHHHHHHccccCC-----CCeEEEEEEeCCeeeEEEEeCCCCCCHHh--------HHHHHh-hcccCCCCCccc
Q psy1955 24 IQRPANALKELLENSLDAK-----STSIQVTVKQGGLKLLQIQDNGTGIRKED--------MDIVCE-RFTTSKLTQFED 89 (512)
Q Consensus 24 i~~~~~~v~eLv~Ns~dA~-----a~~i~i~~~~~~~~~i~v~DnG~Gi~~~~--------~~~~~~-~~~tsK~~~~~d 89 (512)
+..|..+|+|||+||+|++ |+.|.|.++.++ ..|+|.|||.|||.++ ++.++. .|++||+.+ |
T Consensus 50 ~~GL~~lv~EivdNsiDe~~~~g~~~~I~V~i~~~~-~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsKf~~--~ 126 (400)
T 1zxm_A 50 VPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPEN-NLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDD--D 126 (400)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTT-TEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCCCG--G
T ss_pred cchHHHHHHHHHhhHHhHHhhcCCCceEEEEEECCC-CEEEEEECCCcccCccccccCccchhheeeeecccCCCCC--C
Confidence 4678999999999999997 999999998753 3599999999999887 676666 899999864 6
Q ss_pred cccccccCCcchhhhhhhccc-eEEEEEecCCCCceEEEEeee
Q psy1955 90 LNSISTFGFRGEALASISHVA-HLTIITKTKTSPCAYRWCTYL 131 (512)
Q Consensus 90 ~~~~~~~G~rGeaL~si~~~s-~l~i~S~~~~~~~~~~~~~~~ 131 (512)
...+ +.||+|+|++++.++| .++|.++...+..+|+. .|.
T Consensus 127 ~ykv-SgGlhGvGlsvVnAlS~~l~v~v~~~~~g~~~~~-~~~ 167 (400)
T 1zxm_A 127 EKKV-TGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQ-TWM 167 (400)
T ss_dssp GCCC-CSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEE-EEE
T ss_pred cccc-cCCccccceeeeEEeccceEEEEecCCCCcEEEE-EEc
Confidence 6666 9999999999999997 59999988656677777 665
No 27
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=99.61 E-value=1.7e-16 Score=154.32 Aligned_cols=117 Identities=22% Similarity=0.321 Sum_probs=93.3
Q ss_pred ccccccChHHHHHHhcCCcccCHHHHHHHHHHccccCC----------------CCe--EEEEEEeCCeeeEEEEeCCCC
Q psy1955 5 PKIKKLDETVVNRIAAGEVIQRPANALKELLENSLDAK----------------STS--IQVTVKQGGLKLLQIQDNGTG 66 (512)
Q Consensus 5 ~~i~~l~~~~~~~i~s~~~i~~~~~~v~eLv~Ns~dA~----------------a~~--i~i~~~~~~~~~i~v~DnG~G 66 (512)
..|++|++.++++|.+ ++..+|+|||+||+||+ |+. |.|.++.++. .|+|.|||+|
T Consensus 31 ~~i~~L~~~l~~~lys-----~~~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~~~~~-~i~I~DnG~G 104 (235)
T 2ior_A 31 SEVKQLLHLMIHSLYS-----NKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKR-TLTISDNGVG 104 (235)
T ss_dssp HHHHHHHHHHHHHTGG-----GTTHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEETTTT-EEEEEECSSC
T ss_pred hhHHHHHHHHHHhhcC-----CHHHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEcCCce-EEEEEECCCC
Confidence 3477888888888877 67899999999999998 444 5555555543 5999999999
Q ss_pred CCHHhHHHHHhhcccCCCCCccc-c-----ccccccCCcchhhhhhhccc-eEEEEEecCCC--CceEEE
Q psy1955 67 IRKEDMDIVCERFTTSKLTQFED-L-----NSISTFGFRGEALASISHVA-HLTIITKTKTS--PCAYRW 127 (512)
Q Consensus 67 i~~~~~~~~~~~~~tsK~~~~~d-~-----~~~~~~G~rGeaL~si~~~s-~l~i~S~~~~~--~~~~~~ 127 (512)
|+++++...+.++++|+...+.+ + .....+|++|++++|...++ +|+|.||+.+. ..+|.|
T Consensus 105 Ms~edl~~~~~~ia~S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~~~~~~~v~V~Sr~~~~~~~~~~~w 174 (235)
T 2ior_A 105 MTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFW 174 (235)
T ss_dssp CCHHHHHHHHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGGGGTEEEEEEEEECTTSCGGGEEEE
T ss_pred CCHHHHHHHHHHHccccccchhhhhccccccccccCCCCChhHHHHHhCcCeEEEEEecCCCCCceeEEE
Confidence 99999999999999998654421 1 23467899999998876666 69999999877 678887
No 28
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=99.59 E-value=3.6e-15 Score=154.99 Aligned_cols=166 Identities=17% Similarity=0.199 Sum_probs=122.2
Q ss_pred hhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCceeeEeecCCCCCCCcch--------hhh-hhhccccCCcc
Q psy1955 285 EDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGGLKLLQIQDNGTGIRKED--------MDI-VCERFTTSKLT 355 (512)
Q Consensus 285 ~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~--------l~~-~~~~~~TSKi~ 355 (512)
..-++..+.+.|.|++++.-..- +.. .|.|.+...+ ..++|.|||+||+.++ +.. ++..|++||++
T Consensus 50 ~~GL~~lv~EivdNsiDe~~~~g-~~~---~I~V~i~~~~-~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsKf~ 124 (400)
T 1zxm_A 50 VPGLYKIFDEILVNAADNKQRDP-KMS---CIRVTIDPEN-NLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYD 124 (400)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCT-TCC---EEEEEEETTT-TEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCCC
T ss_pred cchHHHHHHHHHhhHHhHHhhcC-CCc---eEEEEEECCC-CEEEEEECCCcccCccccccCccchhheeeeecccCCCC
Confidence 45778889999999998851000 000 1666666543 3799999999999887 233 45589999998
Q ss_pred ccccccccccccccchhhhhHhhhc-ceEEEEecCCCCCceEEEEecCccccccc---ccCCCCCceEEehhhcccchhh
Q psy1955 356 QFEDLNSISTFGFRGEALASISHVA-HLTIITKTKTSPCAYRASYIDSKLKDPIK---PCAGNQGTQIIAEDLFYNIPTR 431 (512)
Q Consensus 356 ~~~dl~~~~t~GfRGeALaSi~~~s-~l~I~T~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~GTtV~V~~lF~n~PvR 431 (512)
+ |...+ |.||||++|++++++| .++|+++...+...|+..|.+|....... ++..+.||+|+++ |.|
T Consensus 125 ~--~~ykv-SgGlhGvGlsvVnAlS~~l~v~v~~~~~g~~~~~~~~~G~~~~~~~~ig~~~~~~GT~V~F~------Pd~ 195 (400)
T 1zxm_A 125 D--DEKKV-TGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGEMELKPFNGEDYTCITFQ------PDL 195 (400)
T ss_dssp G--GGCCC-CSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEECCSCCEEEEEEE------ECG
T ss_pred C--Ccccc-cCCccccceeeeEEeccceEEEEecCCCCcEEEEEEccCccccCcceeccCCCCCccEEEEE------ECh
Confidence 6 66666 9999999999999997 58899988666678888898774332212 2235689999987 888
Q ss_pred hcccCCC--hHHHHH-HHHHHHHHhhcCCCeEEEEEE
Q psy1955 432 RKALKQP--SEEYNK-IADVVSRYAVHNPHVGFTLKK 465 (512)
Q Consensus 432 rk~~~~~--~~e~~~-i~~~l~~yaL~~p~v~f~l~~ 465 (512)
++| +.. ..+..+ |.+.++++|+.+|.|+|.|.+
T Consensus 196 ~iF-~~~ef~~~~~~~l~~rlrelA~lnpgv~i~l~d 231 (400)
T 1zxm_A 196 SKF-KMQSLDKDIVALMVRRAYDIAGSTKDVKVFLNG 231 (400)
T ss_dssp GGG-TCSSCCHHHHHHHHHHHHHHHHHSSSCEEEETT
T ss_pred HHh-CceeecHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 887 432 233333 889999999999999999965
No 29
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=99.58 E-value=8.2e-15 Score=152.42 Aligned_cols=196 Identities=13% Similarity=0.185 Sum_probs=139.8
Q ss_pred hHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCceeeEeecCCCCCCCcchhhh---------hhhccccCCcccc
Q psy1955 287 TIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDI---------VCERFTTSKLTQF 357 (512)
Q Consensus 287 ~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~---------~~~~~~TSKi~~~ 357 (512)
-....|++.|.|++++.-.. . ...|.|.+...+ .++|.|||+||+++++.. .+..|+++|+++
T Consensus 32 g~~~~v~Elv~N~iD~a~~~---~--~~~I~V~i~~~~--~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~~~~~kf~~- 103 (390)
T 1kij_A 32 GYHHLFKEILDNAVDEALAG---Y--ATEILVRLNEDG--SLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFEQ- 103 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHTT---S--CCEEEEEECTTS--CEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEESGGGG-
T ss_pred hHHHHHHHHHHHHHHHhhhC---C--CCEEEEEEEcCC--EEEEEEcCCCCCHHHhhhccccchhhheeeeeecccccC-
Confidence 34556677777777664110 0 011667776544 799999999999999864 445689999863
Q ss_pred ccccccccccccchhhhhHhhhcc-eEEEEecCCCCCceEEEEecCcccccccc---cC-CCCCceEEehhhcccchhhh
Q psy1955 358 EDLNSISTFGFRGEALASISHVAH-LTIITKTKTSPCAYRASYIDSKLKDPIKP---CA-GNQGTQIIAEDLFYNIPTRR 432 (512)
Q Consensus 358 ~dl~~~~t~GfRGeALaSi~~~s~-l~I~T~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~GTtV~V~~lF~n~PvRr 432 (512)
+... .+.|++|++|+++..+|+ ++|+|+..+ .+|...|.+|....+..+ +. .+.||+|+++ |.|+
T Consensus 104 -~~~~-~s~G~~G~Gls~v~als~~~~v~t~~~g--~~~~~~~~~G~~~~~~~~~~~~~~~~~GT~V~f~------Pd~~ 173 (390)
T 1kij_A 104 -GAYK-VSGGLHGVGASVVNALSEWTVVEVFREG--KHHRIAFSRGEVTEPLRVVGEAPRGKTGTRVTFK------PDPE 173 (390)
T ss_dssp -SSCC-CCSCSSTTSHHHHHHTEEEEEEEEEETT--EEEEEEEETTEEEEEEEEEEECGGGCCEEEEEEE------ECHH
T ss_pred -cccc-ccCCCCCcceeeecccccceEEEEecCC--cEEEEEEcCCcccccceeeccccCCCCCcEEEEE------EChH
Confidence 3323 378999999999999995 999999654 578888888764422222 22 6799999995 8888
Q ss_pred cccCCChHHHHHHHHHHHHHhhcCCCeEEEEEECCccc-eeeecCCCCCHHHHHHhhcChh--hhccceeeecc
Q psy1955 433 KALKQPSEEYNKIADVVSRYAVHNPHVGFTLKKQNENL-ADIRTNVNSSHSEVIGNIYGNN--ISRRVRRFSSA 503 (512)
Q Consensus 433 k~~~~~~~e~~~i~~~l~~yaL~~p~v~f~l~~~~~~~-~~~~~~~~~s~~~~i~~ifG~~--~~~~l~~~~~~ 503 (512)
+| ++...++..|.+.|+++|+.+|+|+|+|.++.... ..|...+ .+.+.+..++|.. +...+++++.+
T Consensus 174 ~F-~~~~~~~~~l~~rl~~~A~lnpgv~i~l~d~~~~~~~~f~~~~--Gl~~~v~~l~~~~~~~~~~~i~~~~~ 244 (390)
T 1kij_A 174 IF-GNLRFDPSKIRARLREVAYLVAGLKLVFQDRQHGKEEVFLDKG--GVASFAKALAEGEDLLYEKPFLIRGT 244 (390)
T ss_dssp HH-TTCCCCHHHHHHHHHHHHHHTTTCEEEEEEGGGTEEEEECCTT--HHHHHHHHHTTTSCBSCSSCEEEEEE
T ss_pred Hh-CCccccHHHHHHHHHHhcCcCCCcEEEEEeCCCcceEEEEcCC--cHHHHHHHHhCCCCcCCCCcEEEEee
Confidence 77 65556788899999999999999999999987421 2354443 4899999998865 44456666543
No 30
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=99.58 E-value=9.4e-16 Score=147.02 Aligned_cols=159 Identities=16% Similarity=0.186 Sum_probs=102.0
Q ss_pred cccccChHHHHHHhcCCcc------cCHHHHHHHHHHccccC----CCCeEEEEEEeCCeeeEEEEeCCCCCCHHhH---
Q psy1955 6 KIKKLDETVVNRIAAGEVI------QRPANALKELLENSLDA----KSTSIQVTVKQGGLKLLQIQDNGTGIRKEDM--- 72 (512)
Q Consensus 6 ~i~~l~~~~~~~i~s~~~i------~~~~~~v~eLv~Ns~dA----~a~~i~i~~~~~~~~~i~v~DnG~Gi~~~~~--- 72 (512)
.|+.|..--.=+.+-|..| ..|..+|+|||+||+|+ +|+.|.|.++.++ .|+|.|||.|||.++.
T Consensus 9 ~i~~l~~le~vr~rPgmYiG~~~~~~gl~~lv~ElvdNsiDea~~g~~~~I~V~i~~~g--~i~V~DnGrGIp~~~~~~~ 86 (220)
T 4duh_A 9 SIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADN--SVSVQDDGRGIPTGIHPEE 86 (220)
T ss_dssp ------CHHHHHHSTHHHHCCSSSSHHHHHHHHHHHHHHHHHHHHSCCCEEEEEECTTS--CEEEEECSSCCCCSEETTT
T ss_pred HcEEechhHHHHhCCceEECCCCCcccHHHHHHHHHHHHHHHHhcCCCCEEEEEEeCCC--cEEEEECCcCccccccccc
Confidence 3666664322233334343 46899999999999999 8999999998765 5999999999999873
Q ss_pred -----HHH-HhhcccCCCCCccccccccccCCcchhhhhhhccc-eEEEEEecCCCCceEEEEeeehh-----h------
Q psy1955 73 -----DIV-CERFTTSKLTQFEDLNSISTFGFRGEALASISHVA-HLTIITKTKTSPCAYRWCTYLAD-----L------ 134 (512)
Q Consensus 73 -----~~~-~~~~~tsK~~~~~d~~~~~~~G~rGeaL~si~~~s-~l~i~S~~~~~~~~~~~~~~~~d-----l------ 134 (512)
+.+ ...|+++|+.+ .....+.||+|+|++++.++| .++|.++..+ ..|+. .|... +
T Consensus 87 ~~~~~e~i~t~lhag~Kfd~---~~yk~SgGlhGvG~svvNAlS~~l~v~v~r~g--~~~~~-~f~~G~~~~~l~~~g~~ 160 (220)
T 4duh_A 87 GVSAAEVIMTVLHAGGKFDD---NSYKVSGGLHGVGVSVVNALSQKLELVIQREG--KIHRQ-IYEHGVPQAPLAVTGET 160 (220)
T ss_dssp TEEHHHHHHHSTTCSSCCCT---TC--------CCCHHHHHHTEEEEEEEEEETT--EEEEE-EEETTEESSSCEEEEEC
T ss_pred CcchhhheeeecccCCCcCC---CccccccCccceecchhcccccceEEEEEECC--EEEEE-EecCCcCcCCceecccc
Confidence 554 47999999854 233479999999999999999 6999998654 45666 56511 1
Q ss_pred ----hhhhhcccchhhhHhhhcCCcHHHHHhhhhhc------ccCeEEEecCC
Q psy1955 135 ----MALALMEMSQYLQRDKEQIGDKEEKQWYRTVE------HTLVPLMKSQY 177 (512)
Q Consensus 135 ----~~~~F~n~Pv~~~Rrk~lks~~~E~~ki~~lv------~p~Vs~~~~~~ 177 (512)
...-|. |- +++|.+....++..+.+.+ +|.|.+...++
T Consensus 161 ~~~GT~V~F~--Pd---~~~F~~~~~~~~~~l~~rlrelA~ln~gv~i~l~de 208 (220)
T 4duh_A 161 EKTGTMVRFW--PS---LETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDK 208 (220)
T ss_dssp SCCEEEEEEE--EC---TTTCCSSCSCCHHHHHHHHHHHHHHCTTSEEEEEET
T ss_pred CCCCcEEEEE--EC---HHHhCCcccCCHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 111353 66 7777654334444444444 89998777654
No 31
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=99.57 E-value=1.3e-14 Score=139.37 Aligned_cols=159 Identities=17% Similarity=0.279 Sum_probs=112.2
Q ss_pred hhHHHHHHHHHHHHhcC----CCCcceeecceeeEEEEEccCceeeEeecCCCCCCCcch-------hhh-hhhccccCC
Q psy1955 286 DTIIERVQSMLEKTLLG----SNTSRVFYTQSTSIQVTVKQGGLKLLQIQDNGTGIRKED-------MDI-VCERFTTSK 353 (512)
Q Consensus 286 ~~I~~~I~~~l~~~l~~----~~~~r~~~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~-------l~~-~~~~~~TSK 353 (512)
.-+...+.+.|.|++++ .... |.|.+...| .++|.|||.||+.++ ++. ++..|++||
T Consensus 39 ~gl~~~v~Eiv~NaiD~~~~g~~~~---------I~V~i~~~g--~i~V~DnG~GIp~~~h~~~~~~~e~v~t~lhag~K 107 (226)
T 4emv_A 39 AGLHHLVWEIVDNAVDEALSGFGDR---------IDVTINKDG--SLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGK 107 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSE---------EEEEECTTS--CEEEEECSSCCCCSBCGGGCBHHHHHHHCBC----
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCcE---------EEEEEeCCC--eEEEEEcCCCccccccccCceehheeEEeecccCc
Confidence 35667788888888877 2222 677776544 699999999999988 555 567899999
Q ss_pred ccccccccccccccccchhhhhHhhhc-ceEEEEecCCCCCceEEEEecC-ccccccc---ccC-CCCCceEEehhhccc
Q psy1955 354 LTQFEDLNSISTFGFRGEALASISHVA-HLTIITKTKTSPCAYRASYIDS-KLKDPIK---PCA-GNQGTQIIAEDLFYN 427 (512)
Q Consensus 354 i~~~~dl~~~~t~GfRGeALaSi~~~s-~l~I~T~~~~~~~~~~~~~~~~-~~~~~~~---~~~-~~~GTtV~V~~lF~n 427 (512)
+++ ..-..|.||||+++++++++| .++|+++..+ ..|+..|.+| ....+.. +++ .+.||+|++
T Consensus 108 fd~---~~yk~SgGlhGvG~svvNALS~~l~v~v~r~g--~~~~q~f~~Gg~~~~~l~~ig~~~~~~~GT~V~F------ 176 (226)
T 4emv_A 108 FGQ---GGYKTSGGLHGVGSSVVNALSSWLEVEITRDG--AVYKQRFENGGKPVTTLKKIGTALKSKTGTKVTF------ 176 (226)
T ss_dssp -------------CGGGCCHHHHHHTEEEEEEEEEETT--EEEEEEEETTTEESSCSEEEEECCTTCCEEEEEE------
T ss_pred cCc---cceEeccccccccchhhhhcccceEEEEEeCC--cEEEEEECCCCEEcCCceEecccCCCCCCeEEEE------
Confidence 764 334579999999999999999 6999998765 4588889888 5443221 232 679999998
Q ss_pred chhhhcccCCChHHHHHHHHHHHHHhhcCCCeEEEEEECC
Q psy1955 428 IPTRRKALKQPSEEYNKIADVVSRYAVHNPHVGFTLKKQN 467 (512)
Q Consensus 428 ~PvRrk~~~~~~~e~~~i~~~l~~yaL~~p~v~f~l~~~~ 467 (512)
.|.+..| +...-++..+.+.|+.+|..+|.|+|.|.+..
T Consensus 177 ~PD~~iF-~~~~~~~~~l~~rlrelA~ln~gv~i~l~der 215 (226)
T 4emv_A 177 MPDATIF-STTDFKYNTISERLNESAFLLKNVTLSLTDKR 215 (226)
T ss_dssp EECTTTC-SCCCCCHHHHHHHHHHHHHHHCSCEEEEEETT
T ss_pred EECHHHc-CCCCcCHHHHHHHHHHHhhcCCCCEEEEEecC
Confidence 4777766 54445678899999999999999999998864
No 32
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=99.55 E-value=2.1e-15 Score=146.49 Aligned_cols=113 Identities=19% Similarity=0.351 Sum_probs=83.9
Q ss_pred cccccChHHHHHHhcCCcccCHHHHHHHHHHccccCCC------------------CeEEEEEEeCCeeeEEEEeCCCCC
Q psy1955 6 KIKKLDETVVNRIAAGEVIQRPANALKELLENSLDAKS------------------TSIQVTVKQGGLKLLQIQDNGTGI 67 (512)
Q Consensus 6 ~i~~l~~~~~~~i~s~~~i~~~~~~v~eLv~Ns~dA~a------------------~~i~i~~~~~~~~~i~v~DnG~Gi 67 (512)
.|++|.+-+++.|.++ +..+|+|||+||+||+| ..|.|.++.++ ..|.|.|||+||
T Consensus 17 ei~~L~~ll~~~lys~-----~~~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d~~~-~~i~I~DnG~GM 90 (236)
T 2gqp_A 17 EVNRMMKLIINSLYKN-----KEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEK-NLLHVTDTGVGM 90 (236)
T ss_dssp HHHHHHHHHHHHTTTC-----TTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTT-TEEEEEECSCCC
T ss_pred hHHHHHHHHHHhhcCC-----chHHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEcCCC-CEEEEEECCcCC
Confidence 3677888888877766 67999999999999987 45666666554 469999999999
Q ss_pred CHHhHHHHHhhcccC-------CCCCc-----cccccccccCCcchhhhhhhccceEEEEEecCCCCceEEE
Q psy1955 68 RKEDMDIVCERFTTS-------KLTQF-----EDLNSISTFGFRGEALASISHVAHLTIITKTKTSPCAYRW 127 (512)
Q Consensus 68 ~~~~~~~~~~~~~ts-------K~~~~-----~d~~~~~~~G~rGeaL~si~~~s~l~i~S~~~~~~~~~~~ 127 (512)
+++|+...+.++++| |+... .|+..++.||+++.+++++| .+|+|.||+.++ .+|.|
T Consensus 91 t~edl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~va--~~v~V~Sr~~~~-~~~~w 159 (236)
T 2gqp_A 91 TREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVA--DKVIVTSKHNND-TQHIW 159 (236)
T ss_dssp CHHHHHHHHHCC---------------------CHHHHHHTTCGGGGGGGTE--EEEEEEEECTTS-CCEEE
T ss_pred CHHHHHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhhcC--CEEEEEEeCCCC-ceEEE
Confidence 999999888888887 54432 46667777888877777666 579999999874 57776
No 33
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=99.55 E-value=1.3e-14 Score=156.25 Aligned_cols=202 Identities=15% Similarity=0.182 Sum_probs=136.8
Q ss_pred HHHHHHHHHHhcCCCCccee--------e-cceeeEEEEEccCceeeEeecCCCCCCCcchhhhhhhccccCCcccccc-
Q psy1955 290 ERVQSMLEKTLLGSNTSRVF--------Y-TQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFED- 359 (512)
Q Consensus 290 ~~I~~~l~~~l~~~~~~r~~--------~-~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~~~~~~~TSKi~~~~d- 359 (512)
..|+++|+|+++|.+.-|.. . .....|.|.+...+ ..+.|.|||+||..+++.....+|++|+-..|.+
T Consensus 30 ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~-~~I~I~DnGiGMt~edl~~~l~tiA~Sg~~~f~e~ 108 (559)
T 1y4s_A 30 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDK-RTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLES 108 (559)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTT-TEEEEEECSSCCCHHHHHHHHSCCSCCCCCCTTCC
T ss_pred HHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeCCC-cEEEEEECCCCCCHHHHHHHHhhhcccccHHHHHH
Confidence 34899999999997321110 0 01123677776555 5799999999999999999999999999776621
Q ss_pred -----ccccccccccchhhhhHhhhc-ceEEEEecCCC--CCceEEEEecCccccccccc-CCCCCceEEehhhcccchh
Q psy1955 360 -----LNSISTFGFRGEALASISHVA-HLTIITKTKTS--PCAYRASYIDSKLKDPIKPC-AGNQGTQIIAEDLFYNIPT 430 (512)
Q Consensus 360 -----l~~~~t~GfRGeALaSi~~~s-~l~I~T~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~GTtV~V~~lF~n~Pv 430 (512)
.....++||+|++++|+..+| .++|+||+.+. ..++.|...+++... ..+. ..++||+|++. | -+.
T Consensus 109 l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~~~-i~~~~~~~~GT~I~L~-L---k~d 183 (559)
T 1y4s_A 109 LGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYT-VADITKEDRGTEITLH-L---REG 183 (559)
T ss_dssp --------CCCCSSCCCSGGGHHHHEEEEEEEEECSSSCGGGEEEEEECSSSEEE-EEEECCCSCEEEEEEE-E---CTT
T ss_pred hhccccccccccCCCCcchhhhhhccCeEEEEEcCCCCCCCeeEEEEEeCCCeeE-EeECCCCCCCeEEEEE-E---cch
Confidence 235679999999999999997 69999999873 567777765544321 2233 56899999996 1 122
Q ss_pred hhcccCCChHHHHHHHHHHHHHh--hcCCCeEE--------------EEEECCccceeeecCCCCCHHHHHHhhcC---h
Q psy1955 431 RRKALKQPSEEYNKIADVVSRYA--VHNPHVGF--------------TLKKQNENLADIRTNVNSSHSEVIGNIYG---N 491 (512)
Q Consensus 431 Rrk~~~~~~~e~~~i~~~l~~ya--L~~p~v~f--------------~l~~~~~~~~~~~~~~~~s~~~~i~~ifG---~ 491 (512)
+..++. ..+|+++|++|| +.+| |.| ++.++++.+ |..+++.-..+.+..+|+ .
T Consensus 184 ~~Efle-----~~~I~~iv~kys~fi~~P-I~~~~~e~~~~~~~~~~~~in~~~~l--w~~~~~~i~~e~y~~fy~~~~~ 255 (559)
T 1y4s_A 184 EDEFLD-----DWRVRSIISKYSDHIALP-VEIEKREEKDGETVISWEKINKAQAL--WTRNKSEITDEEYKEFYKHIAH 255 (559)
T ss_dssp CGGGSC-----HHHHHHHHHHHHTTCSSC-EEEEEEECSTTSCEEEEEECCCCCCG--GGSCGGGCCHHHHHHHHHHHHT
T ss_pred hhhcch-----HHHHHHHHHHHhccCCCc-eEEeeccccccccccceEEEeCCccc--eecCcccccHHHHHHHHHhhhh
Confidence 333332 568999999999 9999 999 456666555 333322222346777775 3
Q ss_pred hhhccceeeecccc
Q psy1955 492 NISRRVRRFSSASQ 505 (512)
Q Consensus 492 ~~~~~l~~~~~~~~ 505 (512)
+....|..+.....
T Consensus 256 d~~~~l~~ih~~~e 269 (559)
T 1y4s_A 256 DFNDPLTWSHNRVE 269 (559)
T ss_dssp CSSCEEEEEEECCC
T ss_pred hhhcCeEEEEeccC
Confidence 44566766655443
No 34
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=99.54 E-value=9.1e-15 Score=159.41 Aligned_cols=201 Identities=15% Similarity=0.177 Sum_probs=131.9
Q ss_pred HHHHHHHHHHhcCCCCccee--------e-cceeeEEEEEccCceeeEeecCCCCCCCcchhhhhhhccccCCccccc-c
Q psy1955 290 ERVQSMLEKTLLGSNTSRVF--------Y-TQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFE-D 359 (512)
Q Consensus 290 ~~I~~~l~~~l~~~~~~r~~--------~-~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~~~~~~~TSKi~~~~-d 359 (512)
..|+++|+|+++|.+.-|.. . .....|.|.+...+ ..+.|.|||+||..+++.....+|++|+-..|. .
T Consensus 30 ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~~~-~~I~I~DnGiGMt~edl~~~l~tiA~Sg~~~f~~~ 108 (624)
T 2ioq_A 30 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDK-RTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLES 108 (624)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTT-TEEEEEECSCCCCHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeCCC-cEEEEEECCCCCCHHHHHHHHHhhcccccHHHHHH
Confidence 34899999999987321110 0 01123677776554 579999999999999999988999999976652 1
Q ss_pred -----ccccccccccchhhhhHhhhc-ceEEEEecCC--CCCceEEEEecCccccccccc-CCCCCceEEehhhcccchh
Q psy1955 360 -----LNSISTFGFRGEALASISHVA-HLTIITKTKT--SPCAYRASYIDSKLKDPIKPC-AGNQGTQIIAEDLFYNIPT 430 (512)
Q Consensus 360 -----l~~~~t~GfRGeALaSi~~~s-~l~I~T~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~GTtV~V~~lF~n~Pv 430 (512)
.....++||+|++++|+..+| .++|+||+.+ +..++.|...+++.. ...+. ..++||+|++. | -+.
T Consensus 109 l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~~-~i~~~~~~~~GT~I~L~-L---k~d 183 (624)
T 2ioq_A 109 LGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEY-TVADITKEDRGTEITLH-L---REG 183 (624)
T ss_dssp ------CCTTHHHHHHHHHHHHHHHEEEEEEEEECTTSCGGGEEEEEECSSSCC-EEEEECCSSSEEEEEEE-E---CTT
T ss_pred hcccccccccccCCCCccHHHHHhcCCeEEEEECCCCCCCCeeEEEEEeCCCeE-EEEECCCCCCCeEEEEE-E---cch
Confidence 345679999999999999999 6999999987 456787776654432 12232 56899999996 1 112
Q ss_pred hhcccCCChHHHHHHHHHHHHHh--hcCCCeEE--------------EEEECCccceeeecCCCCCHHHHHHhhcCh---
Q psy1955 431 RRKALKQPSEEYNKIADVVSRYA--VHNPHVGF--------------TLKKQNENLADIRTNVNSSHSEVIGNIYGN--- 491 (512)
Q Consensus 431 Rrk~~~~~~~e~~~i~~~l~~ya--L~~p~v~f--------------~l~~~~~~~~~~~~~~~~s~~~~i~~ifG~--- 491 (512)
+..++. ..+|+++|++|| +.+| |.| ++.++++.+ |..+++.-..+.+..+|+.
T Consensus 184 ~~Efl~-----~~~i~~ivkkys~fi~~P-I~~~~~e~~~~~~~~~~~~in~~~~l--w~~~~~~i~~e~y~~fy~~~~~ 255 (624)
T 2ioq_A 184 EDEFLD-----DWRVRSIISKYSDHIALP-VEIEKREEKDGETVISWEKINKAQAL--WTRNKSEITDEEYKEFYKHIAH 255 (624)
T ss_dssp CGGGGC-----HHHHHHHHHHHHTTCSSC-EEEEEEEECSSCEEEEEEECCCCSCT--TTSCTTTCCHHHHHHHHHHHHT
T ss_pred hhhcch-----HHHHHHHHHHHhccCCCc-eEEeeccccccccccceEEEeCCccc--eEecCccchHHHHHHHHHhhcc
Confidence 222232 568999999999 9999 999 466666554 3333332224467677765
Q ss_pred hhhccceeeeccc
Q psy1955 492 NISRRVRRFSSAS 504 (512)
Q Consensus 492 ~~~~~l~~~~~~~ 504 (512)
+....|..+....
T Consensus 256 d~~~~l~~ih~~~ 268 (624)
T 2ioq_A 256 DFNDPLTWSHNRV 268 (624)
T ss_dssp CCSCCSCCEEEEE
T ss_pred chhcCeEEEEecc
Confidence 4456665555443
No 35
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=99.47 E-value=2e-13 Score=128.95 Aligned_cols=147 Identities=14% Similarity=0.236 Sum_probs=117.0
Q ss_pred hhHHHHHHHHHHHHhcC---CCCcceeecceeeEEEEEccCceeeEeecCCCCCCCcchhhhhhhccccCCccccccccc
Q psy1955 286 DTIIERVQSMLEKTLLG---SNTSRVFYTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNS 362 (512)
Q Consensus 286 ~~I~~~I~~~l~~~l~~---~~~~r~~~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~~~~~~~TSKi~~~~dl~~ 362 (512)
.-+...+++.|.|++++ .-..+ |+|.+...| .++|.|||+||+.+ .|+|+|+..++++..
T Consensus 30 ~gl~~~v~Elv~NsiD~~~ag~~~~--------I~V~i~~~g--~i~V~DnG~Gip~~-------~h~~~~~~~~e~i~t 92 (198)
T 3ttz_A 30 RGLHHLVWEIVDNSIDEALAGYANQ--------IEVVIEKDN--WIKVTDNGRGIPVD-------IQEKMGRPAVEVILT 92 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCE--------EEEEEEGGG--EEEEEECSSCCCCS-------BCTTTSSBHHHHHHH
T ss_pred cchHHHHHHHHHHHHhHHhcCCCcE--------EEEEEeCCC--eEEEEECCCCcccc-------ccCcCCCccccccce
Confidence 45677888888888885 21121 667776555 79999999999986 788999998877632
Q ss_pred cccccccchhhhhHhhhc-ceEEEEecCCCCCceEEEEecCccccccc--ccCCCCCceEEehhhcccchhhhcccCCCh
Q psy1955 363 ISTFGFRGEALASISHVA-HLTIITKTKTSPCAYRASYIDSKLKDPIK--PCAGNQGTQIIAEDLFYNIPTRRKALKQPS 439 (512)
Q Consensus 363 ~~t~GfRGeALaSi~~~s-~l~I~T~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~GTtV~V~~lF~n~PvRrk~~~~~~ 439 (512)
+++++++| .++|+++..+ ..|+..|.+|....+.. +...+.||+|+++ |.|++|+++..
T Consensus 93 ----------~SvVNALS~~l~v~v~r~g--~~~~~~f~~G~~~~~l~~i~~~~~~GT~V~F~------Pd~~iF~~~~~ 154 (198)
T 3ttz_A 93 ----------SSVVNALSQDLEVYVHRNE--TIYHQAYKKGVPQFDLKEVGTTDKTGTVIRFK------ADGEIFTETTV 154 (198)
T ss_dssp ----------TCHHHHTEEEEEEEEEETT--EEEEEEEETTEESSCCEEEEECSCCEEEEEEE------ECTTTCCSCCC
T ss_pred ----------eEehhhhcCeEEEEEEECC--cEEEEEEeCCEECCCceeccCCCCCCcEEEEE------ECHHHhccCCc
Confidence 88889998 6999998866 36888898886543322 3456899999985 99999878777
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEEEECC
Q psy1955 440 EEYNKIADVVSRYAVHNPHVGFTLKKQN 467 (512)
Q Consensus 440 ~e~~~i~~~l~~yaL~~p~v~f~l~~~~ 467 (512)
-++..+.+.|+.+|+.+|.|+|.|.+..
T Consensus 155 ~~~~~l~~rlrelA~ln~gv~i~l~der 182 (198)
T 3ttz_A 155 YNYETLQQRIRELAFLNKGIQITLRDER 182 (198)
T ss_dssp CCHHHHHHHHHHHHHHSTTCEEEEEECS
T ss_pred cCHHHHHHHHHHHhhcCCCCEEEEEeec
Confidence 7889999999999999999999999865
No 36
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=99.46 E-value=1.4e-14 Score=142.75 Aligned_cols=105 Identities=29% Similarity=0.349 Sum_probs=83.5
Q ss_pred CcccCHHHHHHHHHHccccCCC----------------CeEEEEEE-eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCC
Q psy1955 22 EVIQRPANALKELLENSLDAKS----------------TSIQVTVK-QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKL 84 (512)
Q Consensus 22 ~~i~~~~~~v~eLv~Ns~dA~a----------------~~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~ 84 (512)
....++..+|+|||+||+||+| +.|.|.+. .++...|+|.|||+||+++++...+.++++|+.
T Consensus 64 ~lys~~~~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~~~~~I~I~DnG~GMs~edL~~~l~~ia~S~~ 143 (264)
T 1yc1_A 64 TFYSNKEIFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGT 143 (264)
T ss_dssp CCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHHHHHSCTTSCH
T ss_pred hccCCHHHHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEECCCeeEEEEEECCcCCCHHHHHHHHHhhccccc
Confidence 3566899999999999999998 77777774 334557999999999999999999999999985
Q ss_pred CCc-cc---cccccccCCcchhhhhhhccc-eEEEEEecCCCCceEEE
Q psy1955 85 TQF-ED---LNSISTFGFRGEALASISHVA-HLTIITKTKTSPCAYRW 127 (512)
Q Consensus 85 ~~~-~d---~~~~~~~G~rGeaL~si~~~s-~l~i~S~~~~~~~~~~~ 127 (512)
..+ ++ .......|.+|.+++|...++ +|+|.||+.+ ..+|.|
T Consensus 144 ~~f~~~l~~~~d~~~iG~fGiGf~S~f~va~~v~V~Sr~~~-~~~~~w 190 (264)
T 1yc1_A 144 KAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHND-DEQYAW 190 (264)
T ss_dssp HHHHHHHHTTCCGGGGGGGTCGGGGHHHHEEEEEEEEECTT-SCCEEE
T ss_pred hhhhhhhccccchhhcCCCCCCccccccCCCEEEEEEecCC-CceEEE
Confidence 432 11 123467888899998887777 5999999986 457777
No 37
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=99.45 E-value=1.4e-13 Score=133.77 Aligned_cols=158 Identities=16% Similarity=0.191 Sum_probs=111.3
Q ss_pred HHHHHHHHHHhcCCCCccee--------e-cceeeEEEEEccCceeeEeecCCCCCCCcchhhhhhhccccCCcccccc-
Q psy1955 290 ERVQSMLEKTLLGSNTSRVF--------Y-TQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFED- 359 (512)
Q Consensus 290 ~~I~~~l~~~l~~~~~~r~~--------~-~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~~~~~~~TSKi~~~~d- 359 (512)
..|+++|+|++++.+..|.. . ...+.|.|.+...+. .+.|.|||+||+++++.....++++|+...|.+
T Consensus 50 ~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~~~~~-~i~I~DnG~GMs~edl~~~~~~ia~S~~~~f~~~ 128 (235)
T 2ior_A 50 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKR-TLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLES 128 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEETTTT-EEEEEECSSCCCHHHHHHHHTTCCCTTHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEcCCce-EEEEEECCCCCCHHHHHHHHHHHccccccchhhh
Confidence 35899999999986311100 0 011236666654443 599999999999999999999999999877632
Q ss_pred c-----cccccccccchhhhhHhhhc-ceEEEEecCCC--CCceEEEEecCcccccccccCCCCCceEEehhhcccchhh
Q psy1955 360 L-----NSISTFGFRGEALASISHVA-HLTIITKTKTS--PCAYRASYIDSKLKDPIKPCAGNQGTQIIAEDLFYNIPTR 431 (512)
Q Consensus 360 l-----~~~~t~GfRGeALaSi~~~s-~l~I~T~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~GTtV~V~~lF~n~PvR 431 (512)
+ .....+|++|.++.|...++ .++|+||+.++ ..++++.+..++........+.++||+|+|. | . |.|
T Consensus 129 l~~~~~~~~~~iG~fGiG~~S~~~~~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~~i~~~~~~~~GT~V~v~-L-k--~~~ 204 (235)
T 2ior_A 129 LGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVADITKEDRGTEITLH-L-R--EGE 204 (235)
T ss_dssp CCSCHHHHHHHHTTCCCCGGGGGGTEEEEEEEEECTTSCGGGEEEEEECSSSEEEEEEECCCSCEEEEEEE-E-C--TTC
T ss_pred hccccccccccCCCCChhHHHHHhCcCeEEEEEecCCCCCceeEEEEecCCCcEEEeeCCCCCCCEEEEEE-E-c--Cch
Confidence 2 23568999999998776665 69999999876 6788887765432211112366899999995 1 1 344
Q ss_pred hcccCCChHHHHHHHHHHHHHh--hcCC
Q psy1955 432 RKALKQPSEEYNKIADVVSRYA--VHNP 457 (512)
Q Consensus 432 rk~~~~~~~e~~~i~~~l~~ya--L~~p 457 (512)
++++ +..+|.+++++|| |.+|
T Consensus 205 ~~~~-----e~~~i~~lv~~ya~~l~~P 227 (235)
T 2ior_A 205 DEFL-----DDWRVRSIISKYSDHIALP 227 (235)
T ss_dssp GGGG-----CHHHHHHHHHHHTTSCCSC
T ss_pred hhhC-----CHHHHHHHHHHHhccCCCC
Confidence 4444 3678999999999 8886
No 38
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=99.43 E-value=2e-12 Score=134.14 Aligned_cols=274 Identities=15% Similarity=0.158 Sum_probs=141.8
Q ss_pred cccccChHHHHHHhcCCcc--cCHHHHHHHHHHccccC----CCCeEEEEEEeCCeeeEEEEeCCCCCCHHh--------
Q psy1955 6 KIKKLDETVVNRIAAGEVI--QRPANALKELLENSLDA----KSTSIQVTVKQGGLKLLQIQDNGTGIRKED-------- 71 (512)
Q Consensus 6 ~i~~l~~~~~~~i~s~~~i--~~~~~~v~eLv~Ns~dA----~a~~i~i~~~~~~~~~i~v~DnG~Gi~~~~-------- 71 (512)
.|+.|..--.=+.+-|..| .++..+|.|+|+||+|+ .|+.|.|.++.++ .|+|.|||.|||.+.
T Consensus 28 ~I~vL~glE~VRkRPgMYiGst~~~hlv~EivdNsiDea~ag~~~~I~V~i~~dg--sI~V~DnGrGIPv~~h~~~~~~~ 105 (408)
T 3lnu_A 28 DIEVLSGLDPVKRRPGMYTDTARPNHLAQEVIDNSVDEALAGHAKQIEVTLYKDG--SCEVSDDGRGMPVDIHPEEKIPG 105 (408)
T ss_dssp ------CCHHHHHCGGGTSCTTSTHHHHHHHHHHHHHHHHTTSCCEEEEEECTTS--CEEEEECSSCCCCSBCTTTCSBH
T ss_pred HceeccccHHHhcCCccEECCCCcchhhHHHHHHHHHHhhcCCCceEEEEEeCCC--eEEEEEcCCCCCcccccccCCcc
Confidence 3777765333445567788 56689999999999998 8999999997665 599999999999887
Q ss_pred HHHHH-hhcccCCCCCccccccccccCCcchhhhhhhccc-eEEEEEecCCCCceEEEEeeeh-----hh----------
Q psy1955 72 MDIVC-ERFTTSKLTQFEDLNSISTFGFRGEALASISHVA-HLTIITKTKTSPCAYRWCTYLA-----DL---------- 134 (512)
Q Consensus 72 ~~~~~-~~~~tsK~~~~~d~~~~~~~G~rGeaL~si~~~s-~l~i~S~~~~~~~~~~~~~~~~-----dl---------- 134 (512)
++.++ ..|+++|+. |..-..+.|++|+|++++.++| .++|.++..+ ..|+. .|.. .+
T Consensus 106 ~e~i~t~lhaggKfd---~~~ykvSgGlhGvG~svVNALS~~l~v~v~rdG--k~~~q-~f~~G~~~~~l~~ig~~~~~~ 179 (408)
T 3lnu_A 106 VELILTRLHAGGKFN---NRNYTFSGGLHGVGVSVVNALSTKVELFIKREG--SEHRM-EFRDGNAASKLEVVGTVGKKN 179 (408)
T ss_dssp HHHHHHCC-----------------------CHHHHHHTEEEEEEEEEETT--EEEEE-EEETTEECSCCEEEEECCTTC
T ss_pred hheEEEecccCCCcC---CCceeecCCccccccceehhccCeEEEEEEECC--EEEEE-EECCCEECCCceEeccCcCCC
Confidence 45544 889999965 3333478999999999999999 5999998644 44666 5551 11
Q ss_pred --hhhhhcccchhhhHhhhcCCcHHHHHhhhhhc------ccCeEEEecCCc----ceeecCccChHHHHHHHH-hhcce
Q psy1955 135 --MALALMEMSQYLQRDKEQIGDKEEKQWYRTVE------HTLVPLMKSQYQ----PSEKIVERACLLEIASLN-NLELL 201 (512)
Q Consensus 135 --~~~~F~n~Pv~~~Rrk~lks~~~E~~ki~~lv------~p~Vs~~~~~~~----~~~~t~~~s~~~~i~~~~-~~~l~ 201 (512)
...-|. |- +..| ++..-++..+.+.+ +|.|.+...++. ..|.. .+.+.+-+.... .+..+
T Consensus 180 ~GT~V~F~--PD---~~iF-~~~~f~~~~l~~rlrelA~Ln~Gv~I~l~der~~~~~~f~y-egGi~~yv~~l~~~k~~~ 252 (408)
T 3lnu_A 180 TGTRLRFW--AD---PKYF-DTPKFNVRALRHLLRAKAVLCPGLTVKLHDEATGEQDSWYF-ENGLRDYLKGEMAEHEML 252 (408)
T ss_dssp CEEEEEEE--EC---GGGS-SCSCCCHHHHHHHHHHHHHHSTTCEEEEEETTTCCEEEEEC-SSSHHHHHHHHTTTSCCE
T ss_pred CCcEEEEE--EC---HHHh-CCCCcCHHHHHHHHHHHHhhcCCCEEEEEeccCCceeEEEc-CchHHHHHHHHhcCCCcC
Confidence 011242 44 5555 44322333333333 999987776542 23333 345555444111 11222
Q ss_pred E---e-eecCCc-ccEEEEEEEecCcccCCCceEEEEEeCc-----------hHHHHHHHHhhc------CCCC------
Q psy1955 202 S---V-EGTDDA-FQLKVTGWITNVNFSTKKMTFLLFINNP-----------IKRMIEQVYSIY------LPKG------ 253 (512)
Q Consensus 202 ~---i-~~~~~~-~~~~v~G~is~p~~~~~r~~q~lfVNgR-----------i~k~I~~~Y~~~------l~~~------ 253 (512)
+ + ....++ ..+.+.--.. +.+ ...++.|+|+= ++.++.++.+.| ++++
T Consensus 253 ~~~~~~~~~~~~~~~ve~Al~~~-~~~---~e~~~SFvN~I~T~~GGTH~~gfr~altr~in~y~~~~~l~kk~~~l~~~ 328 (408)
T 3lnu_A 253 PADLFVGSLKKDTEIVDWAAGWV-PEG---ELVQESYVNLIPTAQHGTHVNGLRSGLTDALREFCDFRNLLPRGVKLAPE 328 (408)
T ss_dssp EEEEEEEEEECSSCEEEEEEEEC-SSS---CCCEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCCCTTCCCCHH
T ss_pred CCCCeEeeEecCceeEEEEEEEc-CCC---CeEEEEEeCCcCCCCCCcHHHHHHHHHHHHHHHHHHHhCcccCCCCCCHH
Confidence 1 1 111111 1222222111 122 34589999997 444444433332 2221
Q ss_pred ---CCeEEEEEeeCCCceEEEeecCCCcceeecc-hhhHHHHHHHHHHHHhc
Q psy1955 254 ---SFPFVYLSLCMDPKNVDVNVHPTKHEVHFLH-EDTIIERVQSMLEKTLL 301 (512)
Q Consensus 254 ---~~P~~~L~i~ipp~~iDVNvhP~K~eV~f~~-~~~I~~~I~~~l~~~l~ 301 (512)
..=+++|++.+|--.++ ..+|...-=.. ...|-..+.+.+...|.
T Consensus 329 DiregL~aviSvkv~~PqFe---gQTK~kL~n~ev~~~V~~~v~~~l~~~l~ 377 (408)
T 3lnu_A 329 DVWDRVTFVLSLKMTDPQFS---GQTKERLSSRQAAGFIEGAAHDAFSLYLN 377 (408)
T ss_dssp HHHTTEEEEEEEECSSCCEE---STTSCEECCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhCeEEEEEEEcCCCccc---CcccccccCHHHHHHHHHHHHHHHHHHHH
Confidence 23478999999866666 35565433211 12233445555555553
No 39
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=99.41 E-value=8.6e-14 Score=133.91 Aligned_cols=100 Identities=29% Similarity=0.411 Sum_probs=75.9
Q ss_pred cccCHHHHHHHHHHccccCCCC----------------e--EEEEEEeCCeeeEEEEeCCCCCCHHhHHHHHhhcccCC-
Q psy1955 23 VIQRPANALKELLENSLDAKST----------------S--IQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSK- 83 (512)
Q Consensus 23 ~i~~~~~~v~eLv~Ns~dA~a~----------------~--i~i~~~~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK- 83 (512)
...++..+|+|||+||+||+|+ . |.|..+.+ ...|.|.|||+||+++++...+.++++|.
T Consensus 23 lys~~~~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~~-~~~i~I~DnG~GMs~edl~~~l~~ia~S~~ 101 (220)
T 2wer_A 23 VYSNKEIFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPE-QKVLEIRDSGIGMTKAELINNLGTIAKSGT 101 (220)
T ss_dssp CCSSTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGG-GTEEEEEECSCCCCHHHHHHHTTTSCCTTH
T ss_pred ccCCchHHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECCC-CCEEEEEEcCCCCCHHHHHHHHHhHhcccc
Confidence 3344578999999999999983 3 44444433 45699999999999999999998888873
Q ss_pred ------CCCccccccccccCCcchhhhhhhccc-eEEEEEecCCCCceEEE
Q psy1955 84 ------LTQFEDLNSISTFGFRGEALASISHVA-HLTIITKTKTSPCAYRW 127 (512)
Q Consensus 84 ------~~~~~d~~~~~~~G~rGeaL~si~~~s-~l~i~S~~~~~~~~~~~ 127 (512)
+....| ....|.+|.+++|...++ +|+|.||+.+ ..+|.|
T Consensus 102 ~~f~~k~~~~~~---~~~iG~fGiG~~s~~~~~~~v~v~S~~~~-~~~~~~ 148 (220)
T 2wer_A 102 KAFMEALSAGAD---VSMIGQFGVGFYSLFLVADRVQVISKSND-DEQYIW 148 (220)
T ss_dssp HHHHHHHTTTCC---GGGGGGGTCGGGGGGGTEEEEEEEEECTT-SCCEEE
T ss_pred hhHHHHhhccCC---cccCCccchhHHHhhhcCCeeEEEEecCC-CceeEE
Confidence 332223 456777788888777777 5999999876 457777
No 40
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=99.38 E-value=9.5e-13 Score=144.02 Aligned_cols=193 Identities=13% Similarity=0.224 Sum_probs=116.8
Q ss_pred HHHHHHHHHhcCCCCccee--------e-cceeeEEEEEccCceeeEeecCCCCCCCcchhhhhhhccccC-------Cc
Q psy1955 291 RVQSMLEKTLLGSNTSRVF--------Y-TQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTS-------KL 354 (512)
Q Consensus 291 ~I~~~l~~~l~~~~~~r~~--------~-~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~~~~~~~TS-------Ki 354 (512)
.|+++|+|+++|.+.-|.. . .....|.|.+...+ ..+.|.|||+||..+++.....++++| |+
T Consensus 49 fLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~~~-~~I~I~DnGiGMt~edl~~~l~tIA~SGtk~f~~kl 127 (666)
T 2o1u_A 49 FLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEK-NLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKM 127 (666)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETTT-TEEEEEECSCCCCHHHHHHHTTC-------------
T ss_pred HHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeCCC-CEEEEEECCCCCCHHHHHHHHhhhcccccHHHHHHh
Confidence 5899999999886311110 0 11123677776554 579999999999999999999999999 77
Q ss_pred ccc-----ccccccccccccchhhhhHhhhcceEEEEecCCCCCceEEEEecCccccccccc----CCCCCceEEehhhc
Q psy1955 355 TQF-----EDLNSISTFGFRGEALASISHVAHLTIITKTKTSPCAYRASYIDSKLKDPIKPC----AGNQGTQIIAEDLF 425 (512)
Q Consensus 355 ~~~-----~dl~~~~t~GfRGeALaSi~~~s~l~I~T~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~GTtV~V~~lF 425 (512)
.+. .|+..+.++|+++.|++++| ..++|+||+.++ .++.|...+|... ..+. +.++||+|++.
T Consensus 128 ~~~~~~~~~d~~~IGqFGvGfySaf~vA--dkV~V~Sr~~~~-~~~~W~s~gg~~t--i~~~~~~~~~~~GT~I~L~--- 199 (666)
T 2o1u_A 128 TEAQEDGQSTSELIGQFGVGFYSAFLVA--DKVIVTSKHNND-TQHIWESDSNEFS--VIADPRGNTLGRGTTITLV--- 199 (666)
T ss_dssp ------------------CTTGGGGGTE--EEEEEEEECTTS-CCEEEEESSSCCE--EEECTTCCSSSSEEEEEEE---
T ss_pred hhcccccccchhhccCCCcHHHhHHHhc--CEEEEEEeeCCC-ceEEEEEeCCeEE--EEecccCCCCCCCeEEEEE---
Confidence 654 57778899999999888877 789999999875 5777766553321 2222 46899999995
Q ss_pred ccchhhhcccCCChHH---HHHHHHHHHHHh--hcCCCeEE---------------EEEECCccceeeecCCCCCHHHHH
Q psy1955 426 YNIPTRRKALKQPSEE---YNKIADVVSRYA--VHNPHVGF---------------TLKKQNENLADIRTNVNSSHSEVI 485 (512)
Q Consensus 426 ~n~PvRrk~~~~~~~e---~~~i~~~l~~ya--L~~p~v~f---------------~l~~~~~~~~~~~~~~~~s~~~~i 485 (512)
++....| ..+|+++|++|| +.+| |.| ++.++++.+ |..+++.-..+.+
T Consensus 200 ---------Lk~d~~Efle~~~I~~ivkkys~fi~~P-I~~~~~~~~~~~~~~~~~~~iN~~~~l--w~~~~~~i~~eey 267 (666)
T 2o1u_A 200 ---------LKEEASDYLELDTIKNLVKKYSQFINFP-IYVWSSKTGGGGKTVWDWELMNDIKPI--WQRPSKEVEDDEY 267 (666)
T ss_dssp ---------ECTTTTTSSSTTHHHHHHHHHSTTCCSC-EEEEECC-------CCEEEECSCCSCT--TTSCTTTCCHHHH
T ss_pred ---------EccchhhhccHHHHHHHHHHHHhhCCCc-eEEeccccccccccccceEEEecCccc--cccCcccccHHHH
Confidence 2222222 458999999999 9999 888 344444444 3333332224477
Q ss_pred HhhcC---hhhhccceeeeccc
Q psy1955 486 GNIYG---NNISRRVRRFSSAS 504 (512)
Q Consensus 486 ~~ifG---~~~~~~l~~~~~~~ 504 (512)
..+|+ .+....|..+....
T Consensus 268 ~~fy~~~~~d~~~pl~~ih~~~ 289 (666)
T 2o1u_A 268 KAFYKSFSKESDDPMAYIHFTA 289 (666)
T ss_dssp HHHHHHTTCTTSCCSEEEEEEE
T ss_pred HHHHhhhccccccCeeEEEecc
Confidence 77776 44556666555444
No 41
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=99.37 E-value=5.5e-13 Score=128.17 Aligned_cols=117 Identities=19% Similarity=0.299 Sum_probs=80.0
Q ss_pred ccccChHHHHHHhcCCcc-----cCHHHHHHHHHHccccC----CCCeEEEEEEeCCeeeEEEEeCCCCCCHHh------
Q psy1955 7 IKKLDETVVNRIAAGEVI-----QRPANALKELLENSLDA----KSTSIQVTVKQGGLKLLQIQDNGTGIRKED------ 71 (512)
Q Consensus 7 i~~l~~~~~~~i~s~~~i-----~~~~~~v~eLv~Ns~dA----~a~~i~i~~~~~~~~~i~v~DnG~Gi~~~~------ 71 (512)
|+.|..--.=+.+-|..| ..+..+|.|+|+||+|+ .|+.|.|.++.++ .|+|.|||.|||.++
T Consensus 16 i~~l~~le~vr~RPgmYiGs~~~~gl~~~v~Eiv~NaiD~~~~g~~~~I~V~i~~~g--~i~V~DnG~GIp~~~h~~~~~ 93 (226)
T 4emv_A 16 IQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTINKDG--SLTVQDHGRGMPTGMHAMGIP 93 (226)
T ss_dssp -CCCBCTHHHHHCHHHHHSCSSHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS--CEEEEECSSCCCCSBCGGGCB
T ss_pred cEEcchhHHHhhCCceEEcCCCcccHHHHHHHHHHHHHHHHhcCCCcEEEEEEeCCC--eEEEEEcCCCccccccccCce
Confidence 666654222233334444 34789999999999999 8999999998765 599999999999998
Q ss_pred -HHHHH-hhcccCCCCCccccccccccCCcchhhhhhhccc-eEEEEEecCCCCceEEEEeee
Q psy1955 72 -MDIVC-ERFTTSKLTQFEDLNSISTFGFRGEALASISHVA-HLTIITKTKTSPCAYRWCTYL 131 (512)
Q Consensus 72 -~~~~~-~~~~tsK~~~~~d~~~~~~~G~rGeaL~si~~~s-~l~i~S~~~~~~~~~~~~~~~ 131 (512)
++.++ ..|+++|+. |.....+.|++|+|++++.++| .++|.++..+ ..|+. .|.
T Consensus 94 ~~e~v~t~lhag~Kfd---~~~yk~SgGlhGvG~svvNALS~~l~v~v~r~g--~~~~q-~f~ 150 (226)
T 4emv_A 94 TVEVIFTILHAGGKFG---QGGYKTSGGLHGVGSSVVNALSSWLEVEITRDG--AVYKQ-RFE 150 (226)
T ss_dssp HHHHHHHCBC-----------------CGGGCCHHHHHHTEEEEEEEEEETT--EEEEE-EEE
T ss_pred ehheeEEeecccCccC---ccceEeccccccccchhhhhcccceEEEEEeCC--cEEEE-EEC
Confidence 77765 789999954 4445689999999999999999 6999998743 45666 565
No 42
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=99.31 E-value=9.2e-13 Score=124.36 Aligned_cols=126 Identities=13% Similarity=0.195 Sum_probs=95.8
Q ss_pred cCHHHHHHHHHHcccc---CC-CCeEEEEEEeCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCCcc
Q psy1955 25 QRPANALKELLENSLD---AK-STSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFRG 100 (512)
Q Consensus 25 ~~~~~~v~eLv~Ns~d---A~-a~~i~i~~~~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~rG 100 (512)
..|..+|+|||+||+| || |+.|.|.++.++ .|+|.|||.||+.+ +|.|+|+...+++..
T Consensus 30 ~gl~~~v~Elv~NsiD~~~ag~~~~I~V~i~~~g--~i~V~DnG~Gip~~-------~h~~~~~~~~e~i~t-------- 92 (198)
T 3ttz_A 30 RGLHHLVWEIVDNSIDEALAGYANQIEVVIEKDN--WIKVTDNGRGIPVD-------IQEKMGRPAVEVILT-------- 92 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEGGG--EEEEEECSSCCCCS-------BCTTTSSBHHHHHHH--------
T ss_pred cchHHHHHHHHHHHHhHHhcCCCcEEEEEEeCCC--eEEEEECCCCcccc-------ccCcCCCccccccce--------
Confidence 4588999999999999 58 999999998776 69999999999986 788999887776533
Q ss_pred hhhhhhhccc-eEEEEEecCCCCceEEEEeeehh-----h----------hhhhhcccchhhhHhhhcCCcHHHHHhhhh
Q psy1955 101 EALASISHVA-HLTIITKTKTSPCAYRWCTYLAD-----L----------MALALMEMSQYLQRDKEQIGDKEEKQWYRT 164 (512)
Q Consensus 101 eaL~si~~~s-~l~i~S~~~~~~~~~~~~~~~~d-----l----------~~~~F~n~Pv~~~Rrk~lks~~~E~~ki~~ 164 (512)
++++.++| .++|.++..+ ..|+. .|... + ...-|. |. |++|+++.+.++..+.+
T Consensus 93 --~SvVNALS~~l~v~v~r~g--~~~~~-~f~~G~~~~~l~~i~~~~~~GT~V~F~--Pd---~~iF~~~~~~~~~~l~~ 162 (198)
T 3ttz_A 93 --SSVVNALSQDLEVYVHRNE--TIYHQ-AYKKGVPQFDLKEVGTTDKTGTVIRFK--AD---GEIFTETTVYNYETLQQ 162 (198)
T ss_dssp --TCHHHHTEEEEEEEEEETT--EEEEE-EEETTEESSCCEEEEECSCCEEEEEEE--EC---TTTCCSCCCCCHHHHHH
T ss_pred --eEehhhhcCeEEEEEEECC--cEEEE-EEeCCEECCCceeccCCCCCCcEEEEE--EC---HHHhccCCccCHHHHHH
Confidence 78888898 6999998754 36777 66611 1 111353 66 88887776666666666
Q ss_pred hc------ccCeEEEecCC
Q psy1955 165 VE------HTLVPLMKSQY 177 (512)
Q Consensus 165 lv------~p~Vs~~~~~~ 177 (512)
.+ +|+|.|...++
T Consensus 163 rlrelA~ln~gv~i~l~de 181 (198)
T 3ttz_A 163 RIRELAFLNKGIQITLRDE 181 (198)
T ss_dssp HHHHHHHHSTTCEEEEEEC
T ss_pred HHHHHhhcCCCCEEEEEee
Confidence 66 99997776554
No 43
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=99.29 E-value=1.5e-11 Score=127.65 Aligned_cols=176 Identities=14% Similarity=0.210 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHhcC----CCCcceeecceeeEEEEEccCceeeEeecCCCCCCCcchh---------hhhhhccccCCcc
Q psy1955 289 IERVQSMLEKTLLG----SNTSRVFYTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDM---------DIVCERFTTSKLT 355 (512)
Q Consensus 289 ~~~I~~~l~~~l~~----~~~~r~~~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l---------~~~~~~~~TSKi~ 355 (512)
...+.+.|.|++++ .... |+|.+...| .++|.|||+||+.+.. +.++..|+++|++
T Consensus 52 ~hlv~EivdNsiDea~ag~~~~---------I~V~i~~dg--sI~V~DnGrGIPv~~h~~~~~~~~e~i~t~lhaggKfd 120 (408)
T 3lnu_A 52 NHLAQEVIDNSVDEALAGHAKQ---------IEVTLYKDG--SCEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKFN 120 (408)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCE---------EEEEECTTS--CEEEEECSSCCCCSBCTTTCSBHHHHHHHCC-------
T ss_pred chhhHHHHHHHHHHhhcCCCce---------EEEEEeCCC--eEEEEEcCCCCCcccccccCCcchheEEEecccCCCcC
Confidence 44555555555555 3332 677776544 6999999999998874 2356889999976
Q ss_pred ccccccccccccccchhhhhHhhhc-ceEEEEecCCCCCceEEEEecCccccccc---ccC-CCCCceEEehhhcccchh
Q psy1955 356 QFEDLNSISTFGFRGEALASISHVA-HLTIITKTKTSPCAYRASYIDSKLKDPIK---PCA-GNQGTQIIAEDLFYNIPT 430 (512)
Q Consensus 356 ~~~dl~~~~t~GfRGeALaSi~~~s-~l~I~T~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~GTtV~V~~lF~n~Pv 430 (512)
+ ..-..|.||+|++++++.++| .++|+++..+ ..|+..|.+|....+.. ++. ...||+|++ +|.
T Consensus 121 ~---~~ykvSgGlhGvG~svVNALS~~l~v~v~rdG--k~~~q~f~~G~~~~~l~~ig~~~~~~~GT~V~F------~PD 189 (408)
T 3lnu_A 121 N---RNYTFSGGLHGVGVSVVNALSTKVELFIKREG--SEHRMEFRDGNAASKLEVVGTVGKKNTGTRLRF------WAD 189 (408)
T ss_dssp ----------------CHHHHHHTEEEEEEEEEETT--EEEEEEEETTEECSCCEEEEECCTTCCEEEEEE------EEC
T ss_pred C---CceeecCCccccccceehhccCeEEEEEEECC--EEEEEEECCCEECCCceEeccCcCCCCCcEEEE------EEC
Confidence 4 222369999999999999999 6999998765 45888898886543322 332 579999998 488
Q ss_pred hhcccCCChHHHHHHHHHHHHHhhcCCCeEEEEEECCcc-ceeeecCCCCCHHHHHHhhc
Q psy1955 431 RRKALKQPSEEYNKIADVVSRYAVHNPHVGFTLKKQNEN-LADIRTNVNSSHSEVIGNIY 489 (512)
Q Consensus 431 Rrk~~~~~~~e~~~i~~~l~~yaL~~p~v~f~l~~~~~~-~~~~~~~~~~s~~~~i~~if 489 (512)
+..| +...-++..+.+.|+++|..+|.|++.|.+.... ...|... +.+.+-+..+-
T Consensus 190 ~~iF-~~~~f~~~~l~~rlrelA~Ln~Gv~I~l~der~~~~~~f~ye--gGi~~yv~~l~ 246 (408)
T 3lnu_A 190 PKYF-DTPKFNVRALRHLLRAKAVLCPGLTVKLHDEATGEQDSWYFE--NGLRDYLKGEM 246 (408)
T ss_dssp GGGS-SCSCCCHHHHHHHHHHHHHHSTTCEEEEEETTTCCEEEEECS--SSHHHHHHHHT
T ss_pred HHHh-CCCCcCHHHHHHHHHHHHhhcCCCEEEEEeccCCceeEEEcC--chHHHHHHHHh
Confidence 8776 5545567889999999999999999999985421 1234432 34666554444
No 44
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=99.25 E-value=1.7e-12 Score=127.90 Aligned_cols=112 Identities=21% Similarity=0.359 Sum_probs=78.7
Q ss_pred cccccChHHHHHHhcCCcccCHHHHHHHHHHccccCCC----------------C--eEEEEEEeCCeeeEEEEeCCCCC
Q psy1955 6 KIKKLDETVVNRIAAGEVIQRPANALKELLENSLDAKS----------------T--SIQVTVKQGGLKLLQIQDNGTGI 67 (512)
Q Consensus 6 ~i~~l~~~~~~~i~s~~~i~~~~~~v~eLv~Ns~dA~a----------------~--~i~i~~~~~~~~~i~v~DnG~Gi 67 (512)
.|++|.+-.++.|-++ ...+|+|||+||+||+| + .|.|..+.+ ...|+|.|||+||
T Consensus 13 ei~~Ll~li~~~lYsn-----~eifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~-~~~l~I~DnGiGM 86 (269)
T 1qy5_A 13 EVNRMMKLIINSLYKN-----KEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKE-KNLLHVTDTGVGM 86 (269)
T ss_dssp HHHHHHHHHHHHHTTC-----TTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETT-TTEEEEEECSCCC
T ss_pred hHHHHHHHHHHhccCC-----chHHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcCC-ceEEEEEECCCCC
Confidence 3556666666666555 35699999999999986 3 455555543 3469999999999
Q ss_pred CHHhHHHHHhhcccC-------CCCCc-----cccccccccCCcchhhhhhhccc-eEEEEEecCCCCceEEE
Q psy1955 68 RKEDMDIVCERFTTS-------KLTQF-----EDLNSISTFGFRGEALASISHVA-HLTIITKTKTSPCAYRW 127 (512)
Q Consensus 68 ~~~~~~~~~~~~~ts-------K~~~~-----~d~~~~~~~G~rGeaL~si~~~s-~l~i~S~~~~~~~~~~~ 127 (512)
+++++...+..+++| |+... .|.. ..|..|.+++|...+| +|+|.||+.++ .+|.|
T Consensus 87 t~edl~~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~---~IG~fGvGfySaf~va~~v~V~Sk~~~~-~~~~w 155 (269)
T 1qy5_A 87 TREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSE---LIGQFGVGFYSAFLVADKVIVTSKHNND-TQHIW 155 (269)
T ss_dssp CHHHHHHHHHSCCSHHHHHHHHHHHHHHHHTCCCHH---HHHHTTCGGGGGGGTEEEEEEEEECTTS-CCEEE
T ss_pred CHHHHHHHhhhhcccccHHHHHhhhhcccccccchh---hcCCccccHHHHhhccceEEEEEEecCC-cEEEE
Confidence 999998887777666 32211 2333 3455555666666666 59999999864 67777
No 45
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=99.24 E-value=1.1e-11 Score=120.29 Aligned_cols=153 Identities=15% Similarity=0.203 Sum_probs=99.3
Q ss_pred HHHHHHHHHHhcCCCCccee---------ecceeeEEEEEccCceeeEeecCCCCCCCcchhhhhhhccccC-------C
Q psy1955 290 ERVQSMLEKTLLGSNTSRVF---------YTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTS-------K 353 (512)
Q Consensus 290 ~~I~~~l~~~l~~~~~~r~~---------~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~~~~~~~TS-------K 353 (512)
..|+++|+|+++|.+..+.. ......|.|.+...+ ..+.|.|||+||+++|+.....++++| |
T Consensus 35 ~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d~~~-~~i~I~DnG~GMt~edl~~~l~~ia~Sg~~~f~~k 113 (236)
T 2gqp_A 35 IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEK-NLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNK 113 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTT-TEEEEEECSCCCCHHHHHHHHHCC-----------
T ss_pred HHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEcCCC-CEEEEEECCcCCCHHHHHHHHhhhcccccHhHHHH
Confidence 34899999999996521110 001123666665443 478999999999999999988888888 6
Q ss_pred cccc-----ccccccccccccchhhhhHhhhcceEEEEecCCCCCceEEEEecCccccccc--ccCCCCCceEEehhhcc
Q psy1955 354 LTQF-----EDLNSISTFGFRGEALASISHVAHLTIITKTKTSPCAYRASYIDSKLKDPIK--PCAGNQGTQIIAEDLFY 426 (512)
Q Consensus 354 i~~~-----~dl~~~~t~GfRGeALaSi~~~s~l~I~T~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~GTtV~V~~lF~ 426 (512)
+... .|+..+.++|+++.|++++| ..++|+||+.++ .++.+...+|....... ..+.++||+|+|. |-
T Consensus 114 l~~~~~~~~~d~~~iG~fGiG~~S~f~va--~~v~V~Sr~~~~-~~~~w~~~gg~~~i~~~~~~~~~~~GT~I~l~-Lk- 188 (236)
T 2gqp_A 114 MTEAQEDGQSTSELIGQFGVGFYSAFLVA--DKVIVTSKHNND-TQHIWESDSNEFSVIADPRGNTLGRGTTITLV-LK- 188 (236)
T ss_dssp ----------CHHHHHHTTCGGGGGGGTE--EEEEEEEECTTS-CCEEEEESSSCEEEEECTTCSCSSSEEEEEEE-EC-
T ss_pred hhccccccccchhhcCCCCcchhhHhhcC--CEEEEEEeCCCC-ceEEEEEeCCEEEEEeccCCCCCCCCeEEEEE-EC-
Confidence 6653 56777889999999999887 789999999875 47776655432211111 1246799999996 10
Q ss_pred cchhhhcccCCChHHHHHHHHHHHHHhhc
Q psy1955 427 NIPTRRKALKQPSEEYNKIADVVSRYAVH 455 (512)
Q Consensus 427 n~PvRrk~~~~~~~e~~~i~~~l~~yaL~ 455 (512)
+.+..++ +..+|++++++||-.
T Consensus 189 --~~~~~~l-----e~~~i~~lv~~~s~~ 210 (236)
T 2gqp_A 189 --EEASDYL-----ELDTIKNLVKKYSQF 210 (236)
T ss_dssp --GGGGGGG-----CHHHHHHHHHHHHTT
T ss_pred --CcchhhC-----hHHHHHHHHHHHhhh
Confidence 1122222 357899999999943
No 46
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.24 E-value=1.6e-11 Score=132.03 Aligned_cols=201 Identities=17% Similarity=0.216 Sum_probs=132.2
Q ss_pred eecch-hhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEcc--CceeeEeecCCCCCCCcchhhhhhhcc-ccCCccc
Q psy1955 281 HFLHE-DTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQ--GGLKLLQIQDNGTGIRKEDMDIVCERF-TTSKLTQ 356 (512)
Q Consensus 281 ~f~~~-~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~--~~~~~i~v~Dng~gi~~~~l~~~~~~~-~TSKi~~ 356 (512)
.+.+. ..+...|.++|.|++++....... ..+.|.+.... .+.-.++|.|||+||+++++..++.+| +|+|..
T Consensus 24 i~~~d~~~L~qvl~NLV~NAida~~~gg~~--p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~- 100 (530)
T 2zbk_B 24 GFPNPARALYQTVRELIENSLDATDVHGIL--PNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYV- 100 (530)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHTTTTTTTCC--CCCEEEEEEEETTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCCC-
T ss_pred EEcCcHHHHHHHHHHHHHHHHHHHhccCCC--eEEEEEEEECCCcCceEEEEEEECCCCCCHHHHHHHhccccccCCcc-
Confidence 34444 788899999999999987653100 01113333322 234578999999999999999999987 888863
Q ss_pred cccccccccccccchhhhhHhhhcc------eEEEEecCCCCCceEEEE--ec---Cccccccccc---CCCCCceEEeh
Q psy1955 357 FEDLNSISTFGFRGEALASISHVAH------LTIITKTKTSPCAYRASY--ID---SKLKDPIKPC---AGNQGTQIIAE 422 (512)
Q Consensus 357 ~~dl~~~~t~GfRGeALaSi~~~s~------l~I~T~~~~~~~~~~~~~--~~---~~~~~~~~~~---~~~~GTtV~V~ 422 (512)
...+.|++|..|++...+++ ++|.|+..+...++.+.+ .- +.......+. ..++||+|.|.
T Consensus 101 -----~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~~~~~~~GT~V~v~ 175 (530)
T 2zbk_B 101 -----NRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAIS 175 (530)
T ss_dssp -----CSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEETTTTEEEEEEEEEEECCSSCCEEEEEEE
T ss_pred -----cccCCCCccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEecccccCCccccccccCCCCCCCCcEEEEE
Confidence 22578999999999999987 999998765432443332 21 1111112222 26789999997
Q ss_pred hhcccchhhhcccCCChHHH-HHHHHHHHHHhhcCCCeEEEEEECCccceeeecCCC---CCHHHHHHhhcChhhhccce
Q psy1955 423 DLFYNIPTRRKALKQPSEEY-NKIADVVSRYAVHNPHVGFTLKKQNENLADIRTNVN---SSHSEVIGNIYGNNISRRVR 498 (512)
Q Consensus 423 ~lF~n~PvRrk~~~~~~~e~-~~i~~~l~~yaL~~p~v~f~l~~~~~~~~~~~~~~~---~s~~~~i~~ifG~~~~~~l~ 498 (512)
++....+. ..+.+++++||+.||+++|.|.++++..+.+....+ ....+.+.+.+|.++...+.
T Consensus 176 ------------l~~~~~e~~~~i~~~l~~~Al~~p~v~~~l~~~~~~~~~~~~~~~~lp~~~~~~~~~~~Gi~~~~~l~ 243 (530)
T 2zbk_B 176 ------------IPGDWPKAKSRIYEYIKRTYIITPYAEFIFKDPEGNVTYYPRLTNKIPKPPQEVKPHPYGVDREEIKI 243 (530)
T ss_dssp ------------EECCHHHHHHHHHHHHHHHHHHCTTCCEEEECTTSCEEEECCCCCCCCCCCCCCCCCGGGCCHHHHHH
T ss_pred ------------eccchhhHHHHHHHHHHHHHHHCCCcEEEEEECCCeEEEecCccccccCCcceeccCCCChhHHHHHH
Confidence 22233344 789999999999999999999998776544432211 11233445556666555554
Q ss_pred eee
Q psy1955 499 RFS 501 (512)
Q Consensus 499 ~~~ 501 (512)
.++
T Consensus 244 ~~~ 246 (530)
T 2zbk_B 244 LIN 246 (530)
T ss_dssp HHT
T ss_pred HHh
Confidence 443
No 47
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=99.22 E-value=6.4e-12 Score=137.08 Aligned_cols=199 Identities=19% Similarity=0.248 Sum_probs=130.1
Q ss_pred cchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccC--ceeeEeecCCCCCCCcchhhhhhhcc-ccCCcccccc
Q psy1955 283 LHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQG--GLKLLQIQDNGTGIRKEDMDIVCERF-TTSKLTQFED 359 (512)
Q Consensus 283 ~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~--~~~~i~v~Dng~gi~~~~l~~~~~~~-~TSKi~~~~d 359 (512)
.+...+...|.++|.|++++....... . .|.|..... +.-.++|.|||+||+++++..++.+| +|+|+.+..
T Consensus 33 ~D~~~L~~Vl~ELV~NAIDa~~~~g~~--~--~I~V~i~~~~~~~~~I~V~DnG~GIp~e~l~~iF~~~~atskf~~~~- 107 (621)
T 2q2e_B 33 SAPRSLITTVKEAVDNALDACEEAGIL--P--DILVQVERTGPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALK- 107 (621)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTTSCS--C--EEEECCEEETTTEEEEEEECCSCCCCGGGHHHHHSCCCCC--CCCCC-
T ss_pred cCHHHHHHHHHHHHHHHHHHHhhcCCC--c--EEEEEEEECCCcEEEEEEEECCCCCCHHHHHHHhhhhccCCcccccc-
Confidence 357788899999999999986532100 0 144444433 33468999999999999999998886 777876521
Q ss_pred ccccccccccchhhhhHhhhcce------EEEEecCCCCCceEEEE----ecCcccc---cccccCCCCCceEEehhhcc
Q psy1955 360 LNSISTFGFRGEALASISHVAHL------TIITKTKTSPCAYRASY----IDSKLKD---PIKPCAGNQGTQIIAEDLFY 426 (512)
Q Consensus 360 l~~~~t~GfRGeALaSi~~~s~l------~I~T~~~~~~~~~~~~~----~~~~~~~---~~~~~~~~~GTtV~V~~lF~ 426 (512)
.+.|++|.+|+++..+++. +|.|+..+...++...+ .+|.... ...+...++||+|++. |..
T Consensus 108 ----~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~~g~~~~~~~~~~~~~~~~GT~V~~~-f~~ 182 (621)
T 2q2e_B 108 ----QSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNEPDILVDEVRDWFRPHGTQIELE-MRA 182 (621)
T ss_dssp -----CCSSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSSCSCCCCCEEECCCSCSSCCCEEEE-CSC
T ss_pred ----ccCCCceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchhcccccccccccccCCCCCCCEEEEE-ecC
Confidence 4679999999999999865 89998876556777766 3332211 1234567799999998 222
Q ss_pred cchhhhcccCCChHHHHHHHHHHHHHhhcCCCeEEEEEECCccceeeecCCCCCHHHHHH----hhcChhhhccceeee
Q psy1955 427 NIPTRRKALKQPSEEYNKIADVVSRYAVHNPHVGFTLKKQNENLADIRTNVNSSHSEVIG----NIYGNNISRRVRRFS 501 (512)
Q Consensus 427 n~PvRrk~~~~~~~e~~~i~~~l~~yaL~~p~v~f~l~~~~~~~~~~~~~~~~s~~~~i~----~ifG~~~~~~l~~~~ 501 (512)
+.+.+| ...+.+.|++||+.+|+++|+|.++++..+.+... ...+.+... ++||......++.++
T Consensus 183 ~~~~~~---------~~~I~~~L~~lAllnpgv~I~L~d~~~~~~~~~gg-~~~L~~~~~~i~p~~~G~~~~~~eval~ 251 (621)
T 2q2e_B 183 AYVKGR---------RQSIYEYLKATAIVNPHARITLIDPDGNEEVFERA-TDKMPEPAEEILPHPEGIELGTLMKMLH 251 (621)
T ss_dssp CCCCCS---------SSSSHHHHHHHHHHCCSCEEEECCTTSCCEEEECC-CCCCCCCCCCCCCCSTTCCHHHHHHHHH
T ss_pred ccchHH---------HHHHHHHHHHHHhhCCCCEEEEEECCceEEEeCCc-ccchhcccccccCCceeeccCeEEEEEe
Confidence 221110 23577999999999999999999887655444321 122222222 556665544444443
No 48
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.18 E-value=2.2e-10 Score=121.85 Aligned_cols=166 Identities=17% Similarity=0.265 Sum_probs=117.2
Q ss_pred hhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccC----ceeeEeecCCCCCCCcchhhhhhhcc-ccCCcccccc
Q psy1955 285 EDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQG----GLKLLQIQDNGTGIRKEDMDIVCERF-TTSKLTQFED 359 (512)
Q Consensus 285 ~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~----~~~~i~v~Dng~gi~~~~l~~~~~~~-~TSKi~~~~d 359 (512)
...+...|.++|.|++++....... ..|.|..... +.-.++|.|||+||+++++..++.+| +++|..
T Consensus 30 ~~~L~qvl~nLv~NAida~~~gg~~----p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~---- 101 (471)
T 1mu5_A 30 ARALYQTVRELIENSLDATDVHGIL----PNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYV---- 101 (471)
T ss_dssp HHHHHHHHHHHHHHHHHTTGGGTCC----CEEEEEEEEEETTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CCC----
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCc----eEEEEEEEECCCcCcEEEEEEEECCCCCCHHHHHHHhcccccccccc----
Confidence 4778899999999999987543100 0144444432 34478999999999999999999886 788863
Q ss_pred ccccccccccchhhhhHhhhcc------eEEEEecCCCCCceEEEEe------cCccccccccc---CCCCCceEEehhh
Q psy1955 360 LNSISTFGFRGEALASISHVAH------LTIITKTKTSPCAYRASYI------DSKLKDPIKPC---AGNQGTQIIAEDL 424 (512)
Q Consensus 360 l~~~~t~GfRGeALaSi~~~s~------l~I~T~~~~~~~~~~~~~~------~~~~~~~~~~~---~~~~GTtV~V~~l 424 (512)
...+.|++|..|++...+++ ++|.|+..+...++.+.+. .+... ...+. ...+||+|+|.
T Consensus 102 --~~~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~~~~~g~~~-~~~~~~~~~~~~GT~V~v~-- 176 (471)
T 1mu5_A 102 --NRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIV-ERGSVENTRGFHGTSVAIS-- 176 (471)
T ss_dssp --CSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTCCEEEE-EEEEEECCTTCCEEEEEEE--
T ss_pred --cccCCCCceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEeccccccCCccc-ccccccCCCCCCCEEEEEE--
Confidence 23578999999999999987 9999987654334443332 12221 11222 56789999997
Q ss_pred cccchhhhcccCCChHHH-HHHHHHHHHHhhcCCCeEEEEEECCccceee
Q psy1955 425 FYNIPTRRKALKQPSEEY-NKIADVVSRYAVHNPHVGFTLKKQNENLADI 473 (512)
Q Consensus 425 F~n~PvRrk~~~~~~~e~-~~i~~~l~~yaL~~p~v~f~l~~~~~~~~~~ 473 (512)
++....+. ..|.++|+++|+.+|+++|.+.++++..+.+
T Consensus 177 ----------l~~~~~e~~~~I~~~l~~~al~~p~v~i~l~~~~~~~~~~ 216 (471)
T 1mu5_A 177 ----------IPGDWPKAKSRIYEYIKRTYIITPYAEFIFKDPEGNVTYY 216 (471)
T ss_dssp ----------EECCHHHHHHHHHHHHHHHHHHCTTCEEEEECTTCCEEEE
T ss_pred ----------EcCCcchHHHHHHHHHHHHHhHCCCeEEEEEECCceEEEe
Confidence 22222233 7899999999999999999999987765444
No 49
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=99.14 E-value=1.2e-10 Score=111.82 Aligned_cols=158 Identities=20% Similarity=0.161 Sum_probs=103.5
Q ss_pred HHHHHHHHHHhcCCCCccee--------e-cceeeEEEEEccCceeeEeecCCCCCCCcchhhhhhhccccCC-------
Q psy1955 290 ERVQSMLEKTLLGSNTSRVF--------Y-TQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSK------- 353 (512)
Q Consensus 290 ~~I~~~l~~~l~~~~~~r~~--------~-~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~~~~~~~TSK------- 353 (512)
..|+++|+|++++.+..+.. . ...+.|.|.+.. +...+.|.|||+||+++++.....++++|.
T Consensus 29 ~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~-~~~~i~I~DnG~GMs~edl~~~l~~ia~S~~~~f~~k 107 (220)
T 2wer_A 29 IFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKP-EQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEA 107 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEG-GGTEEEEEECSCCCCHHHHHHHTTTSCCTTHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECC-CCCEEEEEEcCCCCCHHHHHHHHHhHhcccchhHHHH
Confidence 35889999999987632110 0 011225565543 345789999999999999999888999884
Q ss_pred ccccccccccccccccchhhhhHhhhc-ceEEEEecCCCCCceEEEEecCcccc--ccc-ccCCCCCceEEehhhcccch
Q psy1955 354 LTQFEDLNSISTFGFRGEALASISHVA-HLTIITKTKTSPCAYRASYIDSKLKD--PIK-PCAGNQGTQIIAEDLFYNIP 429 (512)
Q Consensus 354 i~~~~dl~~~~t~GfRGeALaSi~~~s-~l~I~T~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~GTtV~V~~lF~n~P 429 (512)
+.+..|. ...|..|..+.|...++ .++|+||+.++ .++.+...+++... +.. +.+.++||+|+|. |. +
T Consensus 108 ~~~~~~~---~~iG~fGiG~~s~~~~~~~v~v~S~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~GT~I~l~-Lk---~ 179 (220)
T 2wer_A 108 LSAGADV---SMIGQFGVGFYSLFLVADRVQVISKSNDD-EQYIWESNAGGSFTVTLDEVNERIGRGTILRLF-LK---D 179 (220)
T ss_dssp HTTTCCG---GGGGGGTCGGGGGGGTEEEEEEEEECTTS-CCEEEEECSSSEEEEEECSSSCCCSSEEEEEEE-EC---T
T ss_pred hhccCCc---ccCCccchhHHHhhhcCCeeEEEEecCCC-ceeEEEeCCCCceEeecccCCCCCCCCeEEEEE-EC---c
Confidence 4433344 55666666666666666 69999999874 47877776554221 111 2356899999997 21 2
Q ss_pred hhhcccCCChHHHHHHHHHHHHHhhcCC-CeEE
Q psy1955 430 TRRKALKQPSEEYNKIADVVSRYAVHNP-HVGF 461 (512)
Q Consensus 430 vRrk~~~~~~~e~~~i~~~l~~yaL~~p-~v~f 461 (512)
.+++++ +..+|++++++||..-| .|.+
T Consensus 180 ~~~~~~-----e~~~i~~~v~~~a~~l~~PI~~ 207 (220)
T 2wer_A 180 DQLEYL-----EEKRIKEVIKRHSEFVAYPIQL 207 (220)
T ss_dssp TCGGGG-----CHHHHHHHHHHHCTTCCSCEEE
T ss_pred chHHhC-----CHHHHHHHHHHHHhcCCCceEE
Confidence 344444 35689999999995433 3544
No 50
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=99.12 E-value=1e-10 Score=115.06 Aligned_cols=154 Identities=20% Similarity=0.179 Sum_probs=104.4
Q ss_pred HHHHHHHHHhcCCCCccee--------e-cceeeEEEEEccCceeeEeecCCCCCCCcchhhhhhhccccCCccccc-c-
Q psy1955 291 RVQSMLEKTLLGSNTSRVF--------Y-TQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFE-D- 359 (512)
Q Consensus 291 ~I~~~l~~~l~~~~~~r~~--------~-~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~~~~~~~TSKi~~~~-d- 359 (512)
.|+++|+|++++.+..|.. . ...+.|.|.+.. +...+.|.|||+||+++++.....++++|+...|. +
T Consensus 72 ~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~-~~~~I~I~DnG~GMs~edL~~~l~~ia~S~~~~f~~~l 150 (264)
T 1yc1_A 72 FLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNK-QDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEAL 150 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEET-TTTEEEEEECSCCCCHHHHHHHHHSCTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEECC-CeeEEEEEECCcCCCHHHHHHHHHhhccccchhhhhhh
Confidence 5899999999987521110 0 011225555443 34579999999999999999999999999987651 1
Q ss_pred --ccccccccccchhhhhHhhhc-ceEEEEecCCCCCceEEEEecCcccc--cccccCCCCCceEEehhhcccchhhhcc
Q psy1955 360 --LNSISTFGFRGEALASISHVA-HLTIITKTKTSPCAYRASYIDSKLKD--PIKPCAGNQGTQIIAEDLFYNIPTRRKA 434 (512)
Q Consensus 360 --l~~~~t~GfRGeALaSi~~~s-~l~I~T~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~GTtV~V~~lF~n~PvRrk~ 434 (512)
-......|..|..+.|...++ .++|+||+.++ .++.|...+++... +....+.++||+|+|. |- +.++++
T Consensus 151 ~~~~d~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~-~~~~w~~~~~~~~~i~~~~~~~~~~GT~I~l~-Lk---~~~~e~ 225 (264)
T 1yc1_A 151 QAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDD-EQYAWESSAGGSFTVRTDTGEPMGRGTKVILH-LK---EDQTEY 225 (264)
T ss_dssp HTTCCGGGGGGGTCGGGGHHHHEEEEEEEEECTTS-CCEEEEECSTTEEEEEECCSSCCSSEEEEEEE-EC---GGGGGG
T ss_pred ccccchhhcCCCCCCccccccCCCEEEEEEecCCC-ceEEEEEcCCceEEEeecCCCCCCCCeEEEEE-EC---Cchhhh
Confidence 123467788888887777777 59999999874 47877766543221 1111256899999997 21 223344
Q ss_pred cCCChHHHHHHHHHHHHHhhc
Q psy1955 435 LKQPSEEYNKIADVVSRYAVH 455 (512)
Q Consensus 435 ~~~~~~e~~~i~~~l~~yaL~ 455 (512)
+ +..+|++++++||-.
T Consensus 226 ~-----e~~~i~~lv~k~s~f 241 (264)
T 1yc1_A 226 L-----EERRIKEIVKKHSQF 241 (264)
T ss_dssp G-----SHHHHHHHHHHHTTT
T ss_pred h-----hHHHHHHHHHHHHhh
Confidence 3 357899999999944
No 51
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.12 E-value=1.3e-10 Score=123.44 Aligned_cols=97 Identities=26% Similarity=0.357 Sum_probs=79.9
Q ss_pred cCHHHHHHHHHHccccCCCC-----eEEEEEEeC----CeeeEEEEeCCCCCCHHhHHHHHhhc-ccCCCCCcccccccc
Q psy1955 25 QRPANALKELLENSLDAKST-----SIQVTVKQG----GLKLLQIQDNGTGIRKEDMDIVCERF-TTSKLTQFEDLNSIS 94 (512)
Q Consensus 25 ~~~~~~v~eLv~Ns~dA~a~-----~i~i~~~~~----~~~~i~v~DnG~Gi~~~~~~~~~~~~-~tsK~~~~~d~~~~~ 94 (512)
..+.++|.|||+||+||+++ .|.|.+... +...|+|.|||+||++++++.+|++| .++|.. ...
T Consensus 31 ~~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~------~~~ 104 (471)
T 1mu5_A 31 RALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYV------NRQ 104 (471)
T ss_dssp HHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CCC------CSC
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECCCcCcEEEEEEEECCCCCCHHHHHHHhcccccccccc------ccc
Confidence 46899999999999999987 789888542 46789999999999999999999998 566652 235
Q ss_pred ccCCcchhhhhhhccce------EEEEEecCCCCceEEE
Q psy1955 95 TFGFRGEALASISHVAH------LTIITKTKTSPCAYRW 127 (512)
Q Consensus 95 ~~G~rGeaL~si~~~s~------l~i~S~~~~~~~~~~~ 127 (512)
+.|.+|.+|+++..+++ ++|.|+..++..++.+
T Consensus 105 ~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~ 143 (471)
T 1mu5_A 105 TRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTF 143 (471)
T ss_dssp CSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEE
T ss_pred CCCCceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEE
Confidence 67899999999988876 9999998765545555
No 52
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=99.10 E-value=4.7e-11 Score=117.55 Aligned_cols=103 Identities=26% Similarity=0.365 Sum_probs=75.8
Q ss_pred cccCHHHHHHHHHHccccCCC------------------CeEEEEEEeCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCC
Q psy1955 23 VIQRPANALKELLENSLDAKS------------------TSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKL 84 (512)
Q Consensus 23 ~i~~~~~~v~eLv~Ns~dA~a------------------~~i~i~~~~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~ 84 (512)
...+...+|+|||+||.||.+ ..|.|..+.++ ..|+|.|||+||+++++...+...++|.-
T Consensus 43 lYsn~~ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~d~~~-~tLtI~DNGiGMt~edL~~~LgtIa~Sgt 121 (281)
T 3peh_A 43 LYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEK-NILSITDTGIGMTKVDLINNLGTIAKSGT 121 (281)
T ss_dssp HTTCGGGHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTT-TEEEEEECSCCCCHHHHHHHHHHHHHSCH
T ss_pred ccCChHHHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEEcCCC-cEEEEEeCCCCCCHHHHHHHHHHHHhHhh
Confidence 344568899999999999975 24566665544 46999999999999999866555555532
Q ss_pred CCc-cc----cccccccCCcchhhhhhhccce-EEEEEecCCCCceEEE
Q psy1955 85 TQF-ED----LNSISTFGFRGEALASISHVAH-LTIITKTKTSPCAYRW 127 (512)
Q Consensus 85 ~~~-~d----~~~~~~~G~rGeaL~si~~~s~-l~i~S~~~~~~~~~~~ 127 (512)
..| +. -......|..|.+++|...+|+ |+|.||+.+ ..+|.|
T Consensus 122 k~f~e~l~~~~~d~~~IGqFGVGFySaf~vadkV~V~Sk~~~-~~~~~W 169 (281)
T 3peh_A 122 SNFLEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNND-DEQYIW 169 (281)
T ss_dssp HHHHHHHHHTTCCSTTTTTTTCGGGGGGGTEEEEEEEEECTT-SCCEEE
T ss_pred hhHHHhhhccccccccccccCccchhhccccCEEEEEEecCC-CCEEEE
Confidence 111 00 1234678999999999999985 999999876 468887
No 53
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=99.10 E-value=1.2e-10 Score=127.66 Aligned_cols=108 Identities=29% Similarity=0.393 Sum_probs=82.9
Q ss_pred HHHHHhcCCcccCHHHHHHHHHHccccCCC------------------CeEEEEEEeCCeeeEEEEeCCCCCCHHhHHHH
Q psy1955 14 VVNRIAAGEVIQRPANALKELLENSLDAKS------------------TSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIV 75 (512)
Q Consensus 14 ~~~~i~s~~~i~~~~~~v~eLv~Ns~dA~a------------------~~i~i~~~~~~~~~i~v~DnG~Gi~~~~~~~~ 75 (512)
.++.|... ...+...+|+|||+||+||++ ..|.|.++.++ ..|+|.|||+||+++++...
T Consensus 15 Ll~li~~s-LYsnkeifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~~~-~~I~I~DnGiGMt~edl~~~ 92 (677)
T 2cg9_A 15 LMSLIINT-VYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQ-KVLEIRDSGIGMTKAELINN 92 (677)
T ss_dssp HHHHHHHS-CCSCTTHHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEGGG-TEEEEEECSCCCCHHHHHGG
T ss_pred HHHHHHHh-CCCCchHHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeCCC-CEEEEEECCCCCCHHHHHHH
Confidence 44555443 567788999999999999984 35777776554 46999999999999999988
Q ss_pred HhhcccC-------CCCCccccccccccCCcchhhhhhhccc-eEEEEEecCCCCceEEE
Q psy1955 76 CERFTTS-------KLTQFEDLNSISTFGFRGEALASISHVA-HLTIITKTKTSPCAYRW 127 (512)
Q Consensus 76 ~~~~~ts-------K~~~~~d~~~~~~~G~rGeaL~si~~~s-~l~i~S~~~~~~~~~~~ 127 (512)
+.++++| |+....| ....|..|.+++|...++ +|+|.||+.++ .+|.|
T Consensus 93 l~tIA~Sgt~~f~~kl~~~~d---~~~IGqFGvGFySaf~vadkV~V~Sk~~~~-~~~~W 148 (677)
T 2cg9_A 93 LGTIAKSGTKAFMEALSAGAD---VSMIGQFGVGFYSLFLVADRVQVISKSNDD-EQYIW 148 (677)
T ss_dssp GSSSSSCTTHHHHSCCCSSCC---CCCCCCTTCTTGGGGGTEEEEEEEEECTTS-CEEEE
T ss_pred HHhHhccccHHHHHhhhcccc---hhhcCCCCchhHHHhhcCcEEEEEEccCCC-ceEEE
Confidence 8888888 5554333 356777788887776666 69999999874 57777
No 54
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.08 E-value=1.9e-10 Score=123.83 Aligned_cols=97 Identities=26% Similarity=0.357 Sum_probs=80.6
Q ss_pred cCHHHHHHHHHHccccCCCC-----eEEEEEEeC----CeeeEEEEeCCCCCCHHhHHHHHhhc-ccCCCCCcccccccc
Q psy1955 25 QRPANALKELLENSLDAKST-----SIQVTVKQG----GLKLLQIQDNGTGIRKEDMDIVCERF-TTSKLTQFEDLNSIS 94 (512)
Q Consensus 25 ~~~~~~v~eLv~Ns~dA~a~-----~i~i~~~~~----~~~~i~v~DnG~Gi~~~~~~~~~~~~-~tsK~~~~~d~~~~~ 94 (512)
..+.+++.|||+||+||+++ .|.|.+... +...|+|.|||+||++++++.+|++| .|+|.. ...
T Consensus 30 ~~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~------~~~ 103 (530)
T 2zbk_B 30 RALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYV------NRQ 103 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCCC------CSC
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECCCcCceEEEEEEECCCCCCHHHHHHHhccccccCCcc------ccc
Confidence 46899999999999999987 788888542 46789999999999999999999998 666753 235
Q ss_pred ccCCcchhhhhhhccce------EEEEEecCCCCceEEE
Q psy1955 95 TFGFRGEALASISHVAH------LTIITKTKTSPCAYRW 127 (512)
Q Consensus 95 ~~G~rGeaL~si~~~s~------l~i~S~~~~~~~~~~~ 127 (512)
+.|++|.+|+.+..+++ ++|.|+..++..++.+
T Consensus 104 ~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~ 142 (530)
T 2zbk_B 104 TRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTF 142 (530)
T ss_dssp CSCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEE
T ss_pred CCCCccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEE
Confidence 77999999999988876 9999998765545554
No 55
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=99.06 E-value=5.7e-11 Score=114.61 Aligned_cols=111 Identities=27% Similarity=0.353 Sum_probs=77.7
Q ss_pred HHHHHhcCCcccCHHHHHHHHHHccccCCCC------------------eEEEEEEeCCeeeEEEEeCCCCCCHHhHHHH
Q psy1955 14 VVNRIAAGEVIQRPANALKELLENSLDAKST------------------SIQVTVKQGGLKLLQIQDNGTGIRKEDMDIV 75 (512)
Q Consensus 14 ~~~~i~s~~~i~~~~~~v~eLv~Ns~dA~a~------------------~i~i~~~~~~~~~i~v~DnG~Gi~~~~~~~~ 75 (512)
.++.|..+ ...+...+++|||+||.||.++ .|.|..+.+ ...|+|.|||.||+++++...
T Consensus 28 ll~ll~~~-lYs~~~ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~-~~~L~I~DnGiGMt~edL~~~ 105 (239)
T 3nmq_A 28 LMSLIINT-FYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQ-ERTLTLVDTGIGMTKADLINN 105 (239)
T ss_dssp HHHHHHHS-CCCCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETT-TTEEEEEECSCCCCHHHHHTH
T ss_pred HHHHHHHh-ccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEeCC-ccEEEEEeCCCCCCHHHHHHH
Confidence 44555433 5667889999999999999753 455555544 346999999999999998644
Q ss_pred HhhcccCCCCCc-ccc---ccccccCCcchhhhhhhccce-EEEEEecCCCCceEEE
Q psy1955 76 CERFTTSKLTQF-EDL---NSISTFGFRGEALASISHVAH-LTIITKTKTSPCAYRW 127 (512)
Q Consensus 76 ~~~~~tsK~~~~-~d~---~~~~~~G~rGeaL~si~~~s~-l~i~S~~~~~~~~~~~ 127 (512)
+...+.|.-..| +.+ ......|..|.+++|...+|+ |+|.||+.+ ..+|.|
T Consensus 106 LgtIA~Sgtk~f~e~~~~~~d~~~IGqFGvGfySaf~vadkv~V~Sk~~~-~~~~~W 161 (239)
T 3nmq_A 106 LGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVVVITKHND-DEQYAW 161 (239)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTT-SCCEEE
T ss_pred HHHHhcccchhhhhhhcccCCcccccccCcccccccccCCEEEEEEeeCC-CceeEE
Confidence 433333211111 000 134678999999999999995 999999864 567777
No 56
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=99.04 E-value=2.2e-10 Score=124.95 Aligned_cols=100 Identities=25% Similarity=0.382 Sum_probs=79.9
Q ss_pred cCHHHHHHHHHHccccCCCC-----eEEEEEEeC--CeeeEEEEeCCCCCCHHhHHHHHhhcc-cCCCCCcccccccccc
Q psy1955 25 QRPANALKELLENSLDAKST-----SIQVTVKQG--GLKLLQIQDNGTGIRKEDMDIVCERFT-TSKLTQFEDLNSISTF 96 (512)
Q Consensus 25 ~~~~~~v~eLv~Ns~dA~a~-----~i~i~~~~~--~~~~i~v~DnG~Gi~~~~~~~~~~~~~-tsK~~~~~d~~~~~~~ 96 (512)
..+.+++.|||+||+||+++ .|.|.+..+ +...|+|.|||+||++++++.+|.+|+ |+|+...+ .+.
T Consensus 36 ~~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~~~~~~~I~V~DnG~GIp~e~l~~iF~~~~atskf~~~~-----~s~ 110 (621)
T 2q2e_B 36 RSLITTVKEAVDNALDACEEAGILPDILVQVERTGPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALK-----QSR 110 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEETTTEEEEEEECCSCCCCGGGHHHHHSCCCCC--CCCCC------CC
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEECCCcEEEEEEEECCCCCCHHHHHHHhhhhccCCcccccc-----ccC
Confidence 57899999999999999886 788888543 456799999999999999999999984 45654321 456
Q ss_pred CCcchhhhhhhccceE------EEEEecCCCCceEEEEee
Q psy1955 97 GFRGEALASISHVAHL------TIITKTKTSPCAYRWCTY 130 (512)
Q Consensus 97 G~rGeaL~si~~~s~l------~i~S~~~~~~~~~~~~~~ 130 (512)
|++|++|+++..+++. +|.|+..++..++++ .+
T Consensus 111 Gg~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~-~~ 149 (621)
T 2q2e_B 111 GQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYY-EL 149 (621)
T ss_dssp SSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEE-EC
T ss_pred CCceechhhhhHHHHHhCCCceeEEeeccCCccceEE-EE
Confidence 9999999999998853 999998766577877 55
No 57
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=98.92 E-value=1e-09 Score=108.09 Aligned_cols=160 Identities=14% Similarity=0.179 Sum_probs=103.7
Q ss_pred HHHHHHHHHhcCCCCccee---------ecceeeEEEEEccCceeeEeecCCCCCCCcchhhhhhhccccC-------Cc
Q psy1955 291 RVQSMLEKTLLGSNTSRVF---------YTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTS-------KL 354 (512)
Q Consensus 291 ~I~~~l~~~l~~~~~~r~~---------~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~~~~~~~TS-------Ki 354 (512)
.|+++|.|+++|.+..|.. ....+.|.|.+.. +...+.|.|||+||..+++.....++++| |+
T Consensus 32 fLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~-~~~~l~I~DnGiGMt~edl~~~l~tia~Sgtk~F~~kl 110 (269)
T 1qy5_A 32 FLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDK-EKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKM 110 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEET-TTTEEEEEECSCCCCHHHHHHHHHSCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcC-CceEEEEEECCCCCCHHHHHHHhhhhcccccHHHHHhh
Confidence 5889999999986421110 0011236666643 33468999999999999999888888877 44
Q ss_pred ccc-----ccccccccccccchhhhhHhhhcceEEEEecCCCCCceEEEEecCccccccc--ccCCCCCceEEehhhccc
Q psy1955 355 TQF-----EDLNSISTFGFRGEALASISHVAHLTIITKTKTSPCAYRASYIDSKLKDPIK--PCAGNQGTQIIAEDLFYN 427 (512)
Q Consensus 355 ~~~-----~dl~~~~t~GfRGeALaSi~~~s~l~I~T~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~GTtV~V~~lF~n 427 (512)
.+. .|...+..+|+++.+++++| ..++|+||+.++ .++.|...+|....... ..+.++||+|++.
T Consensus 111 ~~~~~~~~~d~~~IG~fGvGfySaf~va--~~v~V~Sk~~~~-~~~~w~s~gg~~~i~~~~~~~~~~~GT~I~L~----- 182 (269)
T 1qy5_A 111 TEAQEDGQSTSELIGQFGVGFYSAFLVA--DKVIVTSKHNND-TQHIWESDSNEFSVIADPRGNTLGRGTTITLV----- 182 (269)
T ss_dssp HHHHHHTCCCHHHHHHTTCGGGGGGGTE--EEEEEEEECTTS-CCEEEEECSSCEEEEECTTCSCSSSEEEEEEE-----
T ss_pred hhcccccccchhhcCCccccHHHHhhcc--ceEEEEEEecCC-cEEEEEEeCCEEEEEeccCCCcCCCCeEEEEE-----
Confidence 433 46666778888887777766 579999999875 57776655433211111 1246799999995
Q ss_pred chh-hhcccCCChHHHHHHHHHHHHHhhcCC-CeEEEEE
Q psy1955 428 IPT-RRKALKQPSEEYNKIADVVSRYAVHNP-HVGFTLK 464 (512)
Q Consensus 428 ~Pv-Rrk~~~~~~~e~~~i~~~l~~yaL~~p-~v~f~l~ 464 (512)
++. ...++ +..+|++++..|+-.-| .|.+...
T Consensus 183 Lk~d~~e~l-----e~~~i~~lvkkys~fi~~PI~l~~~ 216 (269)
T 1qy5_A 183 LKEEASDYL-----ELDTIKNLVKKYSQFINFPIYVWSS 216 (269)
T ss_dssp ECGGGGGGG-----SHHHHHHHHHTTCTTCSSCEEEEEE
T ss_pred Ecccchhhh-----hHHHHHHHHHhhhcccceeeEEeee
Confidence 221 22223 23579999999994432 3555443
No 58
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=98.80 E-value=1.5e-08 Score=111.08 Aligned_cols=154 Identities=18% Similarity=0.157 Sum_probs=101.9
Q ss_pred HHHHHHHHHhcCCCCccee---------ecceeeEEEEEccCceeeEeecCCCCCCCcchhhhhhhccccC-------Cc
Q psy1955 291 RVQSMLEKTLLGSNTSRVF---------YTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTS-------KL 354 (512)
Q Consensus 291 ~I~~~l~~~l~~~~~~r~~---------~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~~~~~~~TS-------Ki 354 (512)
.|+++|.|+++|.+.-|.. ......|.|.+...+ ..+.|.|||+||..+++...-.+|++| |+
T Consensus 30 fLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~~~-~~I~I~DnGiGMt~edl~~~l~tIA~Sgt~~f~~kl 108 (677)
T 2cg9_A 30 FLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQ-KVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEAL 108 (677)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEGGG-TEEEEEECSCCCCHHHHHGGGSSSSSCTTHHHHSCC
T ss_pred HHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeCCC-CEEEEEECCCCCCHHHHHHHHHhHhccccHHHHHhh
Confidence 5899999999986421110 001123677776544 579999999999999999999999999 77
Q ss_pred cccccccccccccccchhh-hhHhhhcceEEEEecCCCCCceEEEEecCccc--ccc-cccCCCCCceEEehhhcccchh
Q psy1955 355 TQFEDLNSISTFGFRGEAL-ASISHVAHLTIITKTKTSPCAYRASYIDSKLK--DPI-KPCAGNQGTQIIAEDLFYNIPT 430 (512)
Q Consensus 355 ~~~~dl~~~~t~GfRGeAL-aSi~~~s~l~I~T~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~GTtV~V~~lF~n~Pv 430 (512)
.+..|+. ..|..|-.. +|......|+|+||+.++ .++.|...+++.. ... ...+.++||+|++.
T Consensus 109 ~~~~d~~---~IGqFGvGFySaf~vadkV~V~Sk~~~~-~~~~W~s~g~~~~ti~~~~~~~~~~~GT~I~L~-------- 176 (677)
T 2cg9_A 109 SAGADVS---MIGQFGVGFYSLFLVADRVQVISKSNDD-EQYIWESNAGGSFTVTLDEVNERIGRGTILRLF-------- 176 (677)
T ss_dssp CSSCCCC---CCCCTTCTTGGGGGTEEEEEEEEECTTS-CEEEEEECSSSEEEEEECCSSCCCSSEEEEEEE--------
T ss_pred hcccchh---hcCCCCchhHHHhhcCcEEEEEEccCCC-ceEEEEEcCCceEEEeecCCCCCCCCCeEEEEE--------
Confidence 6544553 445444444 444444579999999875 4787776655422 111 11456899999995
Q ss_pred hhcccCCChHH---HHHHHHHHHHHhhcCC-CeEE
Q psy1955 431 RRKALKQPSEE---YNKIADVVSRYAVHNP-HVGF 461 (512)
Q Consensus 431 Rrk~~~~~~~e---~~~i~~~l~~yaL~~p-~v~f 461 (512)
++....| ..+|++++.+||-.-| .|.+
T Consensus 177 ----Lk~d~~e~l~~~~i~~lvkkys~fi~~PI~l 207 (677)
T 2cg9_A 177 ----LKDDQLEYLEEKRIKEVIKRHSEFVAYPIQL 207 (677)
T ss_dssp ----ECTTGGGGGCHHHHHHHHHHHSTTCSSCEEE
T ss_pred ----EcchhhccccHHHHHHHHHHHHhhCCCCeEE
Confidence 3333322 5689999999986543 2544
No 59
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=98.57 E-value=3.3e-08 Score=95.53 Aligned_cols=80 Identities=26% Similarity=0.391 Sum_probs=56.2
Q ss_pred eEEEEEEeCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCc-ccc----ccccccCCcchhhhhhhccce-EEEEEec
Q psy1955 45 SIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQF-EDL----NSISTFGFRGEALASISHVAH-LTIITKT 118 (512)
Q Consensus 45 ~i~i~~~~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~-~d~----~~~~~~G~rGeaL~si~~~s~-l~i~S~~ 118 (512)
.|.|.++.+. ..|+|.|||.||+++++...+...++|.-..| +.+ ......|..|.+++|...+|+ |+|.||
T Consensus 120 ~I~I~~Dk~~-~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVGFySaFmVAdkV~V~Sk- 197 (272)
T 3ied_A 120 IIKIKPDKEK-KTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSSFLVSNRVEVYTK- 197 (272)
T ss_dssp CEEEEEETTT-TEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGGGGGTEEEEEEEEE-
T ss_pred EEEEEEeCCC-CEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcccceeheeeccCCEEEEEEc-
Confidence 3555556554 35999999999999999977655554421111 011 224567888899999999985 999999
Q ss_pred CCCCceEEE
Q psy1955 119 KTSPCAYRW 127 (512)
Q Consensus 119 ~~~~~~~~~ 127 (512)
. +..+|.|
T Consensus 198 ~-dd~~~~W 205 (272)
T 3ied_A 198 K-EDQIYRW 205 (272)
T ss_dssp S-SSCEEEE
T ss_pred C-CCceEEE
Confidence 3 5677888
No 60
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=98.56 E-value=1.3e-07 Score=92.98 Aligned_cols=160 Identities=18% Similarity=0.215 Sum_probs=104.8
Q ss_pred HHHHHHHHhcCCCCccee---------ecceeeEEEEEccCceeeEeecCCCCCCCcchhhhhhhccccCCcccccc---
Q psy1955 292 VQSMLEKTLLGSNTSRVF---------YTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFED--- 359 (512)
Q Consensus 292 I~~~l~~~l~~~~~~r~~---------~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~~~~~~~TSKi~~~~d--- 359 (512)
|+++|.|+.+|.+..|.. ......|.|.+...+ ..+.|.|||+||.++++...-...++|.-.+|.+
T Consensus 51 LRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~d~~~-~tLtI~DNGiGMt~edL~~~LgtIa~Sgtk~f~e~l~ 129 (281)
T 3peh_A 51 LRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEK-NILSITDTGIGMTKVDLINNLGTIAKSGTSNFLEAIS 129 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTT-TEEEEEECSCCCCHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEEcCCC-cEEEEEeCCCCCCHHHHHHHHHHHHhHhhhhHHHhhh
Confidence 888999998886422210 011233667665433 4689999999999999987666777775443311
Q ss_pred --ccccccccccchhhhhHhhhcc-eEEEEecCCCCCceEEEEecCccc--cccc-ccCCCCCceEEehhhcccchhhhc
Q psy1955 360 --LNSISTFGFRGEALASISHVAH-LTIITKTKTSPCAYRASYIDSKLK--DPIK-PCAGNQGTQIIAEDLFYNIPTRRK 433 (512)
Q Consensus 360 --l~~~~t~GfRGeALaSi~~~s~-l~I~T~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~GTtV~V~~lF~n~PvRrk 433 (512)
-......|..|-.++|...+|. |+|+||+.++ .+|.|...+++.- .+.. ..+.++||+|++.
T Consensus 130 ~~~~d~~~IGqFGVGFySaf~vadkV~V~Sk~~~~-~~~~Wes~g~g~fti~~~~~~~~~~~GT~I~L~----------- 197 (281)
T 3peh_A 130 KSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNDD-EQYIWESTADAKFTIYKDPRGATLKRGTRISLH----------- 197 (281)
T ss_dssp HTTCCSTTTTTTTCGGGGGGGTEEEEEEEEECTTS-CCEEEEEETTSCEEEEECTTCSTTSSEEEEEEE-----------
T ss_pred ccccccccccccCccchhhccccCEEEEEEecCCC-CEEEEEECCCccEEEEEcCCCCCCCCCeEEEEE-----------
Confidence 1234678999999999888874 9999999875 5787776655321 1111 1256799999994
Q ss_pred ccCCChH---HHHHHHHHHHHHhhcCC-CeEEEEEE
Q psy1955 434 ALKQPSE---EYNKIADVVSRYAVHNP-HVGFTLKK 465 (512)
Q Consensus 434 ~~~~~~~---e~~~i~~~l~~yaL~~p-~v~f~l~~ 465 (512)
++.... +-.+|+.+|..|+-.-| .|.+...+
T Consensus 198 -Lked~~e~le~~~ik~ivkkys~fi~~pI~l~~~k 232 (281)
T 3peh_A 198 -LKEDATNLLNDKKLMDLISKYSQFIQFPIYLLHEN 232 (281)
T ss_dssp -ECGGGGGGGSHHHHHHHHHHHTTTCCSCEEEEEEE
T ss_pred -ECCchhhhcCHHHHHHHHHHhhccCCcceEEeeee
Confidence 332222 23679999999985433 36555543
No 61
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=98.52 E-value=8.7e-08 Score=99.99 Aligned_cols=102 Identities=18% Similarity=0.188 Sum_probs=76.0
Q ss_pred cCHHHHHHHHHHccccCC-----CCeEEEEEEeCCeeeEEEEeCCCCCCHHh--------HHH-HHhhcccCCCCCcccc
Q psy1955 25 QRPANALKELLENSLDAK-----STSIQVTVKQGGLKLLQIQDNGTGIRKED--------MDI-VCERFTTSKLTQFEDL 90 (512)
Q Consensus 25 ~~~~~~v~eLv~Ns~dA~-----a~~i~i~~~~~~~~~i~v~DnG~Gi~~~~--------~~~-~~~~~~tsK~~~~~d~ 90 (512)
..|..++.|+|+||+|+. |+.|.|.++.++ ..|+|.|||.|||.+. ++. +..-|+++|+.+ -
T Consensus 63 ~GL~~lv~EivdNaiDe~~~~g~~~~I~V~i~~d~-~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgKfd~---~ 138 (418)
T 1pvg_A 63 PGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEE-HTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDD---D 138 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTT-TEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCT---T
T ss_pred chHHHHHHHHHhCHHHHHHhcCCCCEEEEEEECCC-CEEEEEECCCcccCcccccCCcccceEEEEEEecccccCC---C
Confidence 456779999999999975 899999998764 2599999999999776 333 446688889753 1
Q ss_pred ccccccCCcchhhhhhhccce-EEEEEecCCCCceEEEEeee
Q psy1955 91 NSISTFGFRGEALASISHVAH-LTIITKTKTSPCAYRWCTYL 131 (512)
Q Consensus 91 ~~~~~~G~rGeaL~si~~~s~-l~i~S~~~~~~~~~~~~~~~ 131 (512)
.--.+-|..|.++...-++|. ++|.++...+...|+. .|.
T Consensus 139 ~ykvSGGLhGVG~SvVNALS~~l~V~v~r~rdGk~y~q-~f~ 179 (418)
T 1pvg_A 139 EKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQ-KWE 179 (418)
T ss_dssp SCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEE-EEE
T ss_pred ceeccCCccceeeeeeeeccceEEEEEEECCCCcEEEE-EEE
Confidence 222467999999999999994 8888885322333544 443
No 62
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=98.43 E-value=1.8e-07 Score=90.24 Aligned_cols=151 Identities=20% Similarity=0.202 Sum_probs=98.7
Q ss_pred HHHHHHHHHhcCCCCccee---------ecceeeEEEEEccCceeeEeecCCCCCCCcchhhhhhhccccCCcccccc-c
Q psy1955 291 RVQSMLEKTLLGSNTSRVF---------YTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFED-L 360 (512)
Q Consensus 291 ~I~~~l~~~l~~~~~~r~~---------~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~~~~~~~TSKi~~~~d-l 360 (512)
.++++|.|+.+|.+..|.. ......|.|.+... ...+.|.|||.||.++++...-.+.+.|.-..|.+ +
T Consensus 43 fLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~-~~~L~I~DnGiGMt~edL~~~LgtIA~Sgtk~f~e~~ 121 (239)
T 3nmq_A 43 FLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQ-ERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEAL 121 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETT-TTEEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEeCC-ccEEEEEeCCCCCCHHHHHHHHHHHhcccchhhhhhh
Confidence 3889999999886532210 01123367766543 34689999999999999966555555553333311 1
Q ss_pred ---cccccccccchhhhhHhhhc-ceEEEEecCCCCCceEEEEecCccc--ccccccCCCCCceEEehhhcccchhhhcc
Q psy1955 361 ---NSISTFGFRGEALASISHVA-HLTIITKTKTSPCAYRASYIDSKLK--DPIKPCAGNQGTQIIAEDLFYNIPTRRKA 434 (512)
Q Consensus 361 ---~~~~t~GfRGeALaSi~~~s-~l~I~T~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~GTtV~V~~lF~n~PvRrk~ 434 (512)
......|..|..++|...+| .++|+||+.++ .+|.|....++.- .+....+..+||+|++.
T Consensus 122 ~~~~d~~~IGqFGvGfySaf~vadkv~V~Sk~~~~-~~~~W~s~~~g~fti~~~~~~~~~~GT~I~L~------------ 188 (239)
T 3nmq_A 122 QAGADISMIGQFGVGFYSAYLVAEKVVVITKHNDD-EQYAWESSAGGSFTVRADHGEPIGRGTKVILH------------ 188 (239)
T ss_dssp HTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTS-CCEEEEECSTTEEEEEECCSSCCSSEEEEEEE------------
T ss_pred cccCCcccccccCcccccccccCCEEEEEEeeCCC-ceeEEEECCCCcEEEEecCCCcCCCCCEEEEE------------
Confidence 23468999999999999999 59999999754 5777766544321 11112345799999994
Q ss_pred cCCCh---HHHHHHHHHHHHHhhc
Q psy1955 435 LKQPS---EEYNKIADVVSRYAVH 455 (512)
Q Consensus 435 ~~~~~---~e~~~i~~~l~~yaL~ 455 (512)
++... -+-.+|+++|+.|+-.
T Consensus 189 lk~d~~e~l~~~~i~~lv~kys~f 212 (239)
T 3nmq_A 189 LKEDQTEYLEERRVKEVVKKHSQF 212 (239)
T ss_dssp ECGGGGGGGSHHHHHHHHHHHCTT
T ss_pred ECCChHHhcCHHHHHHHHHHHHhc
Confidence 33221 1235789999999854
No 63
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=98.42 E-value=3.8e-07 Score=80.70 Aligned_cols=84 Identities=12% Similarity=0.203 Sum_probs=64.8
Q ss_pred cCHHHHHHHHHHccccCCCCeEEEEEE-eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCCcchhh
Q psy1955 25 QRPANALKELLENSLDAKSTSIQVTVK-QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFRGEAL 103 (512)
Q Consensus 25 ~~~~~~v~eLv~Ns~dA~a~~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~rGeaL 103 (512)
..+..++.||++||+++....|.|.+. .++...|.|.|||.||++++++.+|++|++++-.. +-.|.+|
T Consensus 43 ~~l~~il~nLl~NAi~~~~~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~~----------~g~GlGL 112 (152)
T 1id0_A 43 NDFVEVMGNVLDNACKYCLEFVEISARQTDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTLR----------PGQGVGL 112 (152)
T ss_dssp HHHHHHHHHHHHHHHHHCSSEEEEEEEECSSCEEEEEEESSSCCCGGGTTGGGSCCCCTTCCC----------TTCCSCH
T ss_pred HHHHHHHHHHHHHHHHhCcCeEEEEEEecCCEEEEEEEeCCCCcCHHHHHHHhccceeccCCC----------CCcccCH
Confidence 347889999999999998888888884 44556799999999999999999999999876432 2345566
Q ss_pred hhhhcc-----ceEEEEEec
Q psy1955 104 ASISHV-----AHLTIITKT 118 (512)
Q Consensus 104 ~si~~~-----s~l~i~S~~ 118 (512)
+.+..+ +++++.+..
T Consensus 113 ~i~~~~~~~~gG~i~~~~~~ 132 (152)
T 1id0_A 113 AVAREITEQYEGKIVAGESM 132 (152)
T ss_dssp HHHHHHHHHTTCEEEEEECT
T ss_pred HHHHHHHHHcCCEEEEEeCC
Confidence 544443 368888864
No 64
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=98.36 E-value=8.9e-07 Score=78.17 Aligned_cols=82 Identities=16% Similarity=0.296 Sum_probs=59.9
Q ss_pred cCHHHHHHHHHHccccCC-----CCeEEEEEE-eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCC
Q psy1955 25 QRPANALKELLENSLDAK-----STSIQVTVK-QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGF 98 (512)
Q Consensus 25 ~~~~~~v~eLv~Ns~dA~-----a~~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~ 98 (512)
..+..++.||++||++++ ...|.|.+. .++...|.|.|||.||+ +++.+|++|++++-. .+-
T Consensus 38 ~~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~g~~--~~~~~~~~~~~~~~~----------~~~ 105 (145)
T 1th8_A 38 TEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDGVVHLTVRDEGVGIP--DIEEARQPLFTTKPE----------LER 105 (145)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEETTEEEEEEEECSSCCS--CHHHHTCCC-----------------CC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEeCCEEEEEEEECCCCcC--hHHHhhcccccCCCC----------CCC
Confidence 467889999999999987 367888883 46667899999999999 889999999988741 123
Q ss_pred cchhhhhhhccc-eEEEEEec
Q psy1955 99 RGEALASISHVA-HLTIITKT 118 (512)
Q Consensus 99 rGeaL~si~~~s-~l~i~S~~ 118 (512)
.|.+|+-+..+. .+++.+..
T Consensus 106 ~GlGL~iv~~~~~~i~~~~~~ 126 (145)
T 1th8_A 106 SGMGFTIMENFMDEVIVESEV 126 (145)
T ss_dssp CSCHHHHHHHHSSEEEEEEET
T ss_pred CcchHHHHHHHHheEEEEeCC
Confidence 577777666665 58887764
No 65
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=98.35 E-value=4.6e-07 Score=81.29 Aligned_cols=85 Identities=19% Similarity=0.250 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHccccCCCCeEEEEEE-eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCCcchhhh
Q psy1955 26 RPANALKELLENSLDAKSTSIQVTVK-QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFRGEALA 104 (512)
Q Consensus 26 ~~~~~v~eLv~Ns~dA~a~~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~rGeaL~ 104 (512)
.+..++.||++||+++....|.|.+. .++...|.|.|||.||++++++.+|++|++++-... -+-.|.+|+
T Consensus 47 ~l~~il~nll~NAik~~~~~I~i~~~~~~~~~~i~i~D~G~gi~~~~~~~~f~~f~~~~~~~~--------~~g~GlGL~ 118 (161)
T 1bxd_A 47 SIKRAVANMVVNAARYGNGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSART--------ISGTGLGLA 118 (161)
T ss_dssp HHHHHHHHHHHHHHTTCCSCEEEEEEEETTEEEEEEEEESSCSCTTGGGCSSCCCCCCSCCCC--------CCCCSCCCC
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHhCCCceeCCCCCC--------CCCcccCHH
Confidence 47889999999999999888998884 456678999999999999999999999998874321 123355554
Q ss_pred hhhcc-----ceEEEEEec
Q psy1955 105 SISHV-----AHLTIITKT 118 (512)
Q Consensus 105 si~~~-----s~l~i~S~~ 118 (512)
-+..+ +.+++.+..
T Consensus 119 i~~~~~~~~gG~i~~~~~~ 137 (161)
T 1bxd_A 119 IVQRIVDNHNGMLELGTSE 137 (161)
T ss_dssp TTHHHHHHHTSEEEEEEET
T ss_pred HHHHHHHHcCCEEEEEECC
Confidence 33333 368888874
No 66
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=98.32 E-value=6.8e-07 Score=86.48 Aligned_cols=88 Identities=22% Similarity=0.292 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHccccCCC-----CeEEEEEE-eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCCc
Q psy1955 26 RPANALKELLENSLDAKS-----TSIQVTVK-QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFR 99 (512)
Q Consensus 26 ~~~~~v~eLv~Ns~dA~a-----~~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~r 99 (512)
.+.+++.|||+||++|.. ..|.|.+. .++...|.|.|||+||++++++.+|++|++.+-..- ...+-.
T Consensus 138 ~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~------~~~~G~ 211 (258)
T 2c2a_A 138 RIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLT------YEVPGT 211 (258)
T ss_dssp HHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEETTEEEEEEEECSSCCCGGGTTGGGSTTCCCC---------------C
T ss_pred HHHHHHHHHHHHHHhcCcCCCCceeEEEEEecCCCeEEEEEEecCCCCCHHHHHhhccccccCCCCCC------CCCCCc
Confidence 478899999999999864 34777773 455677999999999999999999999998763211 111224
Q ss_pred chhhhhhhcc-----ceEEEEEecC
Q psy1955 100 GEALASISHV-----AHLTIITKTK 119 (512)
Q Consensus 100 GeaL~si~~~-----s~l~i~S~~~ 119 (512)
|.+|+-...+ +.+.+.|...
T Consensus 212 GLGL~i~~~iv~~~gG~i~v~s~~~ 236 (258)
T 2c2a_A 212 GLGLAITKEIVELHGGRIWVESEVG 236 (258)
T ss_dssp CCTHHHHHHHHHHTTCEEEEEEETT
T ss_pred chHHHHHHHHHHHcCCEEEEEecCC
Confidence 6666543333 4799988753
No 67
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=98.30 E-value=6e-06 Score=86.11 Aligned_cols=166 Identities=14% Similarity=0.145 Sum_probs=108.6
Q ss_pred hhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCceeeEeecCCCCCCCcchhh---------hhhhccccCCccc
Q psy1955 286 DTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMD---------IVCERFTTSKLTQ 356 (512)
Q Consensus 286 ~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~---------~~~~~~~TSKi~~ 356 (512)
.-++..+.+.|.|++++....- +.. .|.|.+...+ ..++|.|||.||+.+... .++.-|+.+|+++
T Consensus 63 ~GL~~lv~EivdNaiDe~~~~g-~~~---~I~V~i~~d~-~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgKfd~ 137 (418)
T 1pvg_A 63 PGLFKIFDEILVNAADNKVRDP-SMK---RIDVNIHAEE-HTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDD 137 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT-TCC---EEEEEEETTT-TEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCT
T ss_pred chHHHHHHHHHhCHHHHHHhcC-CCC---EEEEEEECCC-CEEEEEECCCcccCcccccCCcccceEEEEEEecccccCC
Confidence 4567778888888876641100 000 1666666433 369999999999977643 2567799999874
Q ss_pred cccccccccccccchhhhhHhhhcc-eEEEEecCCCCCceEEEEecCc--cccc-ccccC-CCCCceEEehhhcccchhh
Q psy1955 357 FEDLNSISTFGFRGEALASISHVAH-LTIITKTKTSPCAYRASYIDSK--LKDP-IKPCA-GNQGTQIIAEDLFYNIPTR 431 (512)
Q Consensus 357 ~~dl~~~~t~GfRGeALaSi~~~s~-l~I~T~~~~~~~~~~~~~~~~~--~~~~-~~~~~-~~~GTtV~V~~lF~n~PvR 431 (512)
+-.. -+-|..|..++...++|+ ++|++++..+...|+..|.+|. ...+ ..++. ...||+|+.. |-.
T Consensus 138 --~~yk-vSGGLhGVG~SvVNALS~~l~V~v~r~rdGk~y~q~f~~G~~~~~~p~i~~~~~~~tGT~V~F~------PD~ 208 (418)
T 1pvg_A 138 --DEKK-VTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPPKITSYKKGPSYTKVTFK------PDL 208 (418)
T ss_dssp --TSCC-CCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEECCSSCCEEEEEEE------ECG
T ss_pred --Ccee-ccCCccceeeeeeeeccceEEEEEEECCCCcEEEEEEEcCCCccCCCeecccCCCCCceEEEEE------ECh
Confidence 2111 377999999999999994 8888886434456888888762 2222 12222 4689999962 444
Q ss_pred hcccC-CChHH-HHHHHHHHHHHhhcCCCeEEEEEE
Q psy1955 432 RKALK-QPSEE-YNKIADVVSRYAVHNPHVGFTLKK 465 (512)
Q Consensus 432 rk~~~-~~~~e-~~~i~~~l~~yaL~~p~v~f~l~~ 465 (512)
..|-. ....+ +..+.+.++.+|..+|.+++.|.+
T Consensus 209 ~iF~~~~f~~d~l~~l~~RlrelA~Ln~Gl~I~l~d 244 (418)
T 1pvg_A 209 TRFGMKELDNDILGVMRRRVYDINGSVRDINVYLNG 244 (418)
T ss_dssp GGGTCSSCCHHHHHHHHHHHHHHHHHSTTCEEEETT
T ss_pred HHcCCcccCHHHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 33311 12222 223678899999999999999964
No 68
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=98.28 E-value=1.8e-06 Score=76.29 Aligned_cols=85 Identities=19% Similarity=0.279 Sum_probs=58.2
Q ss_pred cCHHHHHHHHHHccccCCC-CeEEEEEE-eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCCcchh
Q psy1955 25 QRPANALKELLENSLDAKS-TSIQVTVK-QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFRGEA 102 (512)
Q Consensus 25 ~~~~~~v~eLv~Ns~dA~a-~~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~rGea 102 (512)
..+..++.||++||++++. ..|.|.+. .++...|.|.|||.||++++++.+|++|+++.-.. -+-.|.+
T Consensus 45 ~~l~~il~nLl~NA~~~~~~~~I~i~~~~~~~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~~~---------~~g~GlG 115 (150)
T 1ysr_A 45 AGLRLAVDNAIANAVKHGGATLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTAS---------HSGSGLG 115 (150)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEEEEEEEETTEEEEEEEESSSCCCGGGHHHHHTSCC--------------------CC
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCEEEEEEEECCCCCCHHHHHHHhcccccCCCCC---------CCCCCcC
Confidence 3477899999999999864 46777773 45567899999999999999999999999653211 1123555
Q ss_pred hhhhhcc-----ceEEEEEec
Q psy1955 103 LASISHV-----AHLTIITKT 118 (512)
Q Consensus 103 L~si~~~-----s~l~i~S~~ 118 (512)
|+-+..+ +++++.+..
T Consensus 116 L~i~~~~~~~~gG~i~~~~~~ 136 (150)
T 1ysr_A 116 LALVAQQAQLHGGTASLENSP 136 (150)
T ss_dssp CHHHHHHHHHTTCEEEEEECT
T ss_pred HHHHHHHHHHcCCEEEEeecC
Confidence 5443333 368888864
No 69
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=98.25 E-value=1.1e-06 Score=78.08 Aligned_cols=81 Identities=17% Similarity=0.247 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHccccCC---CCeEEEEEE-eCC----------eeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccc
Q psy1955 26 RPANALKELLENSLDAK---STSIQVTVK-QGG----------LKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLN 91 (512)
Q Consensus 26 ~~~~~v~eLv~Ns~dA~---a~~i~i~~~-~~~----------~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~ 91 (512)
.+..++.||+.||+++. ...|.|.+. .++ ...|.|.|||.||++++++.+|++|++++-
T Consensus 48 ~l~~il~nLl~NAik~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~~------- 120 (160)
T 1r62_A 48 QIEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGRE------- 120 (160)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC------------------------
T ss_pred HHHHHHHHHHHHHHHHhhccCCeEEEEEeccccccccccccccEEEEEEEeCCCCCCHHHHHHhhCccccCCC-------
Confidence 47889999999999975 567777773 222 457999999999999999999999998762
Q ss_pred cccccCCcchhhhhhhcc-----ceEEEEEec
Q psy1955 92 SISTFGFRGEALASISHV-----AHLTIITKT 118 (512)
Q Consensus 92 ~~~~~G~rGeaL~si~~~-----s~l~i~S~~ 118 (512)
+-.|.+|+.+..+ +.+++.|..
T Consensus 121 -----~g~GlGL~i~~~~~~~~gG~l~i~s~~ 147 (160)
T 1r62_A 121 -----GGTGLGLSIARNLIDQHSGKIEFTSWP 147 (160)
T ss_dssp --------CHHHHHHHHHHHHTTCEEEEEEET
T ss_pred -----CCCccCHHHHHHHHHHCCCeEEEEeCC
Confidence 1246777655444 368888874
No 70
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=98.25 E-value=5.9e-07 Score=82.85 Aligned_cols=86 Identities=21% Similarity=0.374 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHccccCC--------------CCeEEEEEE-eCCeeeEEEEeCCCCCCHHhH------------------
Q psy1955 26 RPANALKELLENSLDAK--------------STSIQVTVK-QGGLKLLQIQDNGTGIRKEDM------------------ 72 (512)
Q Consensus 26 ~~~~~v~eLv~Ns~dA~--------------a~~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~------------------ 72 (512)
.+..++.|||+||++++ ...|.|.+. .++...|.|.|||+||+++++
T Consensus 47 ~l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~~~~~~~~~~~~~~~ 126 (189)
T 1i58_A 47 EIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATL 126 (189)
T ss_dssp HHHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEEEEEEEEETTEEEEEEEECSSCCCHHHHHHHHHHTTSSCHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEEEEEecCCEEEEEEEeCCCCcCHHHHhhhhhhccchhhhhhccc
Confidence 34556999999999985 456777773 566778999999999999987
Q ss_pred ------HHHHhhcccCCCCCccccccccccCCcchhhhhhhcc-----ceEEEEEec
Q psy1955 73 ------DIVCERFTTSKLTQFEDLNSISTFGFRGEALASISHV-----AHLTIITKT 118 (512)
Q Consensus 73 ------~~~~~~~~tsK~~~~~d~~~~~~~G~rGeaL~si~~~-----s~l~i~S~~ 118 (512)
+.+|++|+++|-.. ...+-.|.+|+.+..+ +.+++.|..
T Consensus 127 ~~~~~~~~if~~~~~~~~~~-------~~~~g~GlGL~iv~~~~~~~~G~i~i~s~~ 176 (189)
T 1i58_A 127 SDQEILNFLFVPGFSTKEKV-------SEVSGRGVGMDVVKNVVESLNGSISIESEK 176 (189)
T ss_dssp CHHHHHGGGGSTTCSHHHHH-------HGGGTCCCHHHHHHHHHHHTTCEEEEEEET
T ss_pred chhhhHHHhcCCcccccccC-------CCCCCCccCHHHHHHHHHHcCCEEEEEeCC
Confidence 77888888765321 1122356777654444 368998874
No 71
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=98.23 E-value=1.2e-06 Score=91.42 Aligned_cols=94 Identities=16% Similarity=0.164 Sum_probs=67.0
Q ss_pred cCHHHHHHHHHHccccCCCC---------eEEEEEE-eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCcccccccc
Q psy1955 25 QRPANALKELLENSLDAKST---------SIQVTVK-QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSIS 94 (512)
Q Consensus 25 ~~~~~~v~eLv~Ns~dA~a~---------~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~ 94 (512)
..+..++.|||+||++|... .|.|.+. .++...|.|.|||.||++++++.+|++||+++-....+.....
T Consensus 242 ~~L~~il~NLl~NAik~t~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~~~~~~~~ 321 (407)
T 2q8g_A 242 SHLYHMVFELFKNAMRATMEHHANRGVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAV 321 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTTCCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEeCCCEEEEEEEecCCCCCHHHHHHHhCccccCCCCCCccccCCC
Confidence 35788999999999998543 5888884 4556789999999999999999999999998754110000112
Q ss_pred ccCCcchhhhhhhcc-----ceEEEEEec
Q psy1955 95 TFGFRGEALASISHV-----AHLTIITKT 118 (512)
Q Consensus 95 ~~G~rGeaL~si~~~-----s~l~i~S~~ 118 (512)
..+-.|.+|+-...+ +++++.|..
T Consensus 322 ~~~G~GLGL~Ivr~i~~~~gG~i~v~s~~ 350 (407)
T 2q8g_A 322 PLAGFGYGLPISRLYAQYFQGDLKLYSLE 350 (407)
T ss_dssp CSSCTTCHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCCCcCCCHHHHHHHHHHhCCEEEEEEcC
Confidence 334456677533333 479999875
No 72
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=98.22 E-value=1.3e-06 Score=90.62 Aligned_cols=93 Identities=19% Similarity=0.170 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHccccCCCC---------eEEEEEE-eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccc
Q psy1955 26 RPANALKELLENSLDAKST---------SIQVTVK-QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSIST 95 (512)
Q Consensus 26 ~~~~~v~eLv~Ns~dA~a~---------~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~ 95 (512)
.+..++.|||+||++|... .|.|.+. .++...|.|.|||.||++++++.+|++||+++-....+......
T Consensus 230 ~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~~~~~~~ 309 (394)
T 2e0a_A 230 HLHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAP 309 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSSSCCCEEEEEEECSSEEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC------CCC
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCCCEEEEEEeCCCEEEEEEEeCCCCcCHHHHHHHhCcCccCCCCCCcCcCCCCC
Confidence 4789999999999998532 4888884 45567899999999999999999999999987531000001122
Q ss_pred cCCcchhhhhhhcc-----ceEEEEEec
Q psy1955 96 FGFRGEALASISHV-----AHLTIITKT 118 (512)
Q Consensus 96 ~G~rGeaL~si~~~-----s~l~i~S~~ 118 (512)
.+-.|.+|+-...+ +++++.|..
T Consensus 310 ~~G~GLGL~i~~~i~~~~gG~i~v~s~~ 337 (394)
T 2e0a_A 310 LAGFGYGLPISRLYAKYFQGDLNLYSLS 337 (394)
T ss_dssp SSCSSCHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCCcccCHHHHHHHHHHhCCEEEEEecC
Confidence 33446666533332 479999875
No 73
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=98.19 E-value=2.6e-06 Score=82.55 Aligned_cols=81 Identities=21% Similarity=0.315 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHccccCCC--CeEEEEEE-eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCCcchh
Q psy1955 26 RPANALKELLENSLDAKS--TSIQVTVK-QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFRGEA 102 (512)
Q Consensus 26 ~~~~~v~eLv~Ns~dA~a--~~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~rGea 102 (512)
.+..++.|||.||+++.. ..|.|.+. .++...|.|.|||.||++++++.+|++|++++-. -.|.+
T Consensus 155 ~l~~il~nLl~NA~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~------------g~GlG 222 (268)
T 4ew8_A 155 RLAQTLDHLVENALRQTPPGGRVTLSARRALGEVRLDVSDTGRGVPFHVQAHIFDRFVGRDRG------------GPGLG 222 (268)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCEEEEEEEECSSEEEEEEEESSCCCCHHHHTTTTSTTCCCSSC------------CCTTH
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEEEecCCEEEEEEEcCCCCCCHHHHHHHHHHHhcCCCC------------CCccc
Confidence 378899999999999865 47888874 4556789999999999999999999999987632 24666
Q ss_pred hhhhhcc-----ceEEEEEec
Q psy1955 103 LASISHV-----AHLTIITKT 118 (512)
Q Consensus 103 L~si~~~-----s~l~i~S~~ 118 (512)
|+.+..+ +.+++.+..
T Consensus 223 L~i~~~~~~~~gG~i~i~s~~ 243 (268)
T 4ew8_A 223 LALVKALVELHGGWVALESEP 243 (268)
T ss_dssp HHHHHHHHHHTTCEEEEEECT
T ss_pred HHHHHHHHHHcCCEEEEEecC
Confidence 6544443 368888874
No 74
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=98.19 E-value=2.7e-06 Score=80.91 Aligned_cols=88 Identities=22% Similarity=0.343 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHccccCC--CCeEEEEEE-eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCCcchh
Q psy1955 26 RPANALKELLENSLDAK--STSIQVTVK-QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFRGEA 102 (512)
Q Consensus 26 ~~~~~v~eLv~Ns~dA~--a~~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~rGea 102 (512)
.+..++.||+.||+++. ...|.|.+. .++...|.|.|||.||++++++.+|++|+++|-. +-.|.+
T Consensus 123 ~l~~il~nLl~NA~~~~~~~~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~if~~~~~~~~~-----------~g~GlG 191 (244)
T 3d36_A 123 KFRQCLLNVMKNAIEAMPNGGTLQVYVSIDNGRVLIRIADTGVGMTKEQLERLGEPYFTTKGV-----------KGTGLG 191 (244)
T ss_dssp HHHHHHHHHHHHHHHTCTTCEEEEEEEEEETTEEEEEEEECSSCCCHHHHHHTTSTTCCSSGG-----------GCCSCH
T ss_pred HHHHHHHHHHHHHHHhccCCCeEEEEEEEeCCEEEEEEEecCCCCCHHHHHHHhcccccCCCC-----------CCcchh
Confidence 47889999999999986 456777773 4667789999999999999999999999987621 123666
Q ss_pred hhhhhcc-----ceEEEEEecCCCCceEEE
Q psy1955 103 LASISHV-----AHLTIITKTKTSPCAYRW 127 (512)
Q Consensus 103 L~si~~~-----s~l~i~S~~~~~~~~~~~ 127 (512)
|+.+..+ +.+++.+... .|+.+
T Consensus 192 L~i~~~i~~~~gG~i~~~~~~~---~G~~~ 218 (244)
T 3d36_A 192 MMVVYRIIESMNGTIRIESEIH---KGTTV 218 (244)
T ss_dssp HHHHHHHHHHTTCEEEEEEETT---TEEEE
T ss_pred HHHHHHHHHHcCCEEEEEecCC---CcEEE
Confidence 6544443 3688888743 35544
No 75
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=98.15 E-value=1.3e-06 Score=91.43 Aligned_cols=93 Identities=16% Similarity=0.149 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHccccCCCC----------eEEEEEE-eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCcccccccc
Q psy1955 26 RPANALKELLENSLDAKST----------SIQVTVK-QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSIS 94 (512)
Q Consensus 26 ~~~~~v~eLv~Ns~dA~a~----------~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~ 94 (512)
.+..++.|||+||++|... .|.|.+. .++...|.|.|||.||++++++.+|++||+++-....+-....
T Consensus 253 ~L~~vl~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~~~~~~ 332 (419)
T 1y8o_A 253 HLFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRAA 332 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCTTTC-------------
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEeCCCEEEEEEEECCCCCCHHHHHHHhCcccccCCCCCccccCCC
Confidence 4789999999999998643 5888884 4556689999999999999999999999998743100000111
Q ss_pred ccCCcchhhhhhhcc-----ceEEEEEec
Q psy1955 95 TFGFRGEALASISHV-----AHLTIITKT 118 (512)
Q Consensus 95 ~~G~rGeaL~si~~~-----s~l~i~S~~ 118 (512)
..+-.|.+|+-...+ ++++|.|..
T Consensus 333 ~~~G~GLGL~I~k~iv~~~gG~I~v~s~~ 361 (419)
T 1y8o_A 333 PLAGFGYGLPISRLYARYFQGDLKLYSME 361 (419)
T ss_dssp CC--CTTHHHHHHHHHHHTTCEEEEEEET
T ss_pred CcCCeecCHHHHHHHHHHhCCEEEEEecC
Confidence 223346666533333 479999985
No 76
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=98.15 E-value=1.3e-06 Score=81.87 Aligned_cols=86 Identities=17% Similarity=0.294 Sum_probs=42.0
Q ss_pred HHHHHHHHHHccccCCCC--eEEEEEEeCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCCcchhhh
Q psy1955 27 PANALKELLENSLDAKST--SIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFRGEALA 104 (512)
Q Consensus 27 ~~~~v~eLv~Ns~dA~a~--~i~i~~~~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~rGeaL~ 104 (512)
+..++.|||+||+++... .|.|.+...+ |.|.|||.||++++++.+|++|++++-.. -+-.|.+|+
T Consensus 118 l~~il~nLl~NAi~~~~~~~~i~i~~~~~~---i~V~D~G~Gi~~~~~~~if~~f~~~~~~~---------~~g~GlGL~ 185 (222)
T 3jz3_A 118 LSLLVRNLLDNAVRYSPQGSVVDVTLNADN---FIVRDNGPGVTPEALARIGERFYRPPGQT---------ATGSGLGLS 185 (222)
T ss_dssp HHHHHHHHHHHHHHTCCTTCEEEEEECSSE---EEEECSCC-----------------------------------CTHH
T ss_pred HHHHHHHHHHHHHHcCCCCCeEEEEEccCe---EEEEECCCCCCHHHHHHHHhhhccCCCCC---------CCcccccHH
Confidence 778999999999998754 4555554433 89999999999999999999999865221 123466665
Q ss_pred hhhcc-----ceEEEEEecCCCCceEEE
Q psy1955 105 SISHV-----AHLTIITKTKTSPCAYRW 127 (512)
Q Consensus 105 si~~~-----s~l~i~S~~~~~~~~~~~ 127 (512)
-...+ +.+++.|... .|+++
T Consensus 186 i~~~i~~~~gG~i~i~s~~~---~Gt~v 210 (222)
T 3jz3_A 186 IVQRIAKLHGMNVEFGNAEQ---GGFEA 210 (222)
T ss_dssp HHHHHHHHTTCEEECCBCTT---SSBEE
T ss_pred HHHHHHHHcCCEEEEEcCCC---CcEEE
Confidence 44333 3688877643 35555
No 77
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=98.15 E-value=1.2e-06 Score=77.13 Aligned_cols=59 Identities=22% Similarity=0.296 Sum_probs=50.5
Q ss_pred cCHHHHHHHHHHccccCC--CCeEEEEEE-eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCC
Q psy1955 25 QRPANALKELLENSLDAK--STSIQVTVK-QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSK 83 (512)
Q Consensus 25 ~~~~~~v~eLv~Ns~dA~--a~~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK 83 (512)
..+..++.||++||+++. ...|.|.+. .++...|.|.|||.||++++++.+|++|++++
T Consensus 46 ~~l~~il~nll~NAi~~~~~~~~I~i~~~~~~~~~~i~i~D~G~g~~~~~~~~~f~~~~~~~ 107 (152)
T 3a0y_A 46 TRIKQVLINLVQNAIEATGENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFFTTK 107 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCEEEEEEEECSSEEEEEEEEESCCCCGGGTTGGGSTTCCCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCCEEEEEEEeCCCCcCHHHHHhHhhhhccCC
Confidence 457889999999999975 567888874 45567899999999999999999999999876
No 78
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=98.14 E-value=1.1e-06 Score=91.09 Aligned_cols=94 Identities=21% Similarity=0.237 Sum_probs=65.3
Q ss_pred cCHHHHHHHHHHccccCCCC----------eEEEEEE-eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccc----
Q psy1955 25 QRPANALKELLENSLDAKST----------SIQVTVK-QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFED---- 89 (512)
Q Consensus 25 ~~~~~~v~eLv~Ns~dA~a~----------~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d---- 89 (512)
..+..++.|||.||++|... .|.|.+. .++...|.|.|||.||++++++.+|++|||++-....+
T Consensus 237 ~~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~ 316 (388)
T 1gkz_A 237 MPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRIS 316 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEECSSEEEEEEECCSCCCCTTTTTTTTSTTCCCC----------
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEEeCCCEEEEEEEEeCCCcCHHHHHHhcCcccccCCCcccccccc
Confidence 45789999999999998532 6888884 45567899999999999999999999999998532100
Q ss_pred ----------cccccccCCcchhhhhhhcc-----ceEEEEEec
Q psy1955 90 ----------LNSISTFGFRGEALASISHV-----AHLTIITKT 118 (512)
Q Consensus 90 ----------~~~~~~~G~rGeaL~si~~~-----s~l~i~S~~ 118 (512)
......++-.|.+|+-...+ +++++.|..
T Consensus 317 ~~~~~~~~~~~~~~~~~~G~GLGL~i~r~i~~~~gG~i~v~s~~ 360 (388)
T 1gkz_A 317 PLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQ 360 (388)
T ss_dssp ---------------CCSCSSCHHHHHHHHHHHTTCEEEEEEET
T ss_pred cchhhcccccccCCCCcCCccCCHHHHHHHHHHhCCEEEEEecC
Confidence 00112234456676533333 479999874
No 79
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=98.13 E-value=1.5e-06 Score=89.86 Aligned_cols=86 Identities=21% Similarity=0.356 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHccccCC--------------CCeEEEEE-EeCCeeeEEEEeCCCCCCHHhH------------------
Q psy1955 26 RPANALKELLENSLDAK--------------STSIQVTV-KQGGLKLLQIQDNGTGIRKEDM------------------ 72 (512)
Q Consensus 26 ~~~~~v~eLv~Ns~dA~--------------a~~i~i~~-~~~~~~~i~v~DnG~Gi~~~~~------------------ 72 (512)
.+.+++.|||.||+|++ ...|.|.+ ..++...|+|.|||.||+++.+
T Consensus 106 ~l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~~~~~~v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~~~~~~ 185 (379)
T 1b3q_A 106 EIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATL 185 (379)
T ss_dssp HHHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEEETTEEEEEEEECSCCCCHHHHHHHHHHSSSCCSTTTTTS
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEEEeCCEEEEEEEECCCCCCHHHHHHHHHHcCCCChhhhhcC
Confidence 45566999999999996 34677777 4566778999999999999987
Q ss_pred ------HHHHhhcccCCCCCccccccccccCCcchhhhhhhcc-----ceEEEEEec
Q psy1955 73 ------DIVCERFTTSKLTQFEDLNSISTFGFRGEALASISHV-----AHLTIITKT 118 (512)
Q Consensus 73 ------~~~~~~~~tsK~~~~~d~~~~~~~G~rGeaL~si~~~-----s~l~i~S~~ 118 (512)
+.+|++||+++-.. ...+-+|.+|+-.... +.++|.|..
T Consensus 186 ~~~~~~~~iF~p~fst~~~~-------~~~~G~GlGL~iv~~~v~~~gG~i~v~s~~ 235 (379)
T 1b3q_A 186 SDQEILNFLFVPGFSTKEKV-------SEVSGRGVGMDVVKNVVESLNGSMGIESEK 235 (379)
T ss_dssp CTHHHHSGGGSTTCC------------------CCCSHHHHHHHHHTTCEEEEEEET
T ss_pred CHHHHHHHhcCCCCccCCcc-------CCCCCccccHHHHHHHHHHCCCEEEEEEcC
Confidence 67999999887431 2234567777543333 379999985
No 80
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=98.13 E-value=2.2e-06 Score=88.93 Aligned_cols=93 Identities=16% Similarity=0.171 Sum_probs=62.6
Q ss_pred cCHHHHHHHHHHccccCCCC---------eEEEEEE-eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCcccccccc
Q psy1955 25 QRPANALKELLENSLDAKST---------SIQVTVK-QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSIS 94 (512)
Q Consensus 25 ~~~~~~v~eLv~Ns~dA~a~---------~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~ 94 (512)
..+..++.|||+||++|... .|.|.+. .++...|.|.|||.||++++++.+|++||+++-....+ ....
T Consensus 230 ~~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~-~~~~ 308 (394)
T 2btz_A 230 SHLYHMLFELFKNAMRATVESHESSLILPPIKVMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPG-TGGT 308 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTCSCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHHHHTCTTTTCCC----------
T ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCCCCEEEEEEeCCCEEEEEEEeCCCCCCHHHHHHHhcccccCCCCCCcc-cCCC
Confidence 34788999999999998532 4888884 45567899999999999999999999999987431000 0011
Q ss_pred ccCCcchhhhhhhcc-----ceEEEEEec
Q psy1955 95 TFGFRGEALASISHV-----AHLTIITKT 118 (512)
Q Consensus 95 ~~G~rGeaL~si~~~-----s~l~i~S~~ 118 (512)
..+-.|.+|+-...+ +++++.|..
T Consensus 309 ~~~G~GLGL~i~~~i~~~~gG~i~v~s~~ 337 (394)
T 2btz_A 309 PLAGFGYGLPISRLYAKYFQGDLQLFSME 337 (394)
T ss_dssp -----CCHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCCCccCCHHHHHHHHHHhCCEEEEEecC
Confidence 223346666533333 479999874
No 81
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=98.06 E-value=4.3e-06 Score=76.14 Aligned_cols=89 Identities=19% Similarity=0.339 Sum_probs=61.8
Q ss_pred cCHHHHHHHHHHccccCCC--CeEEEEE--E-eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccccCCc
Q psy1955 25 QRPANALKELLENSLDAKS--TSIQVTV--K-QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFR 99 (512)
Q Consensus 25 ~~~~~~v~eLv~Ns~dA~a--~~i~i~~--~-~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~r 99 (512)
..+..++.|||.||+++.. ..|.|.+ . .++...|.|.|||.||++++++.+|++|++.+-... ...+-.
T Consensus 42 ~~l~~il~nLl~NAi~~~~~~~~i~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~~~------~~~~g~ 115 (177)
T 3sl2_A 42 DKITQVLDNIISNALKYSPEGGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEKVFDRFYRVDKART------RKLGGT 115 (177)
T ss_dssp HHHHHHHHHHHHHHHHTCCTTCCEEEEEEEETTTTEEEEEEECCSSCCCTTTTTTTTSTTCCCC------------CCCC
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEEEEccCCCEEEEEEEECCCCCCHHHHHHHHhhhccCCCCCC------CCCCCC
Confidence 3478899999999999863 3455555 3 355667999999999999999999999997653211 122345
Q ss_pred chhhhhhhcc-----ceEEEEEecC
Q psy1955 100 GEALASISHV-----AHLTIITKTK 119 (512)
Q Consensus 100 GeaL~si~~~-----s~l~i~S~~~ 119 (512)
|.+|+.+..+ +.+++.+...
T Consensus 116 GlGL~iv~~~~~~~~G~i~i~~~~~ 140 (177)
T 3sl2_A 116 GLGLAIAKEMVQAHGGDIWADSIEG 140 (177)
T ss_dssp CCHHHHHHHHHHHTTCCEEEEEETT
T ss_pred CcCHHHHHHHHHHcCCEEEEEecCC
Confidence 6677644443 3688888753
No 82
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=97.99 E-value=1.2e-05 Score=69.29 Aligned_cols=47 Identities=19% Similarity=0.235 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHccccC-CCCeEEEEEE-eCCeeeEEEEeCCCCCCHHhH
Q psy1955 26 RPANALKELLENSLDA-KSTSIQVTVK-QGGLKLLQIQDNGTGIRKEDM 72 (512)
Q Consensus 26 ~~~~~v~eLv~Ns~dA-~a~~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~ 72 (512)
.+..++.||++||+.+ +++.|.|.+. .++...|.|.|||+||+++++
T Consensus 40 ~l~~il~nll~Na~k~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 88 (128)
T 3ehg_A 40 ILSMCLKEAVTNVVKHSQAKTCRVDIQQLWKEVVITVSDDGTFKGEENS 88 (128)
T ss_dssp HHHHHHHHHHHHHHHHTCCSEEEEEEEEETTEEEEEEEESSCCCSCSSC
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEEEEeCCEEEEEEEECCcCcCcccC
Confidence 3567899999999996 4778888883 556678999999999998765
No 83
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=97.98 E-value=3.5e-06 Score=84.62 Aligned_cols=58 Identities=22% Similarity=0.301 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHccccCC--CCeEEEEEE-eCCeeeEEEEeCCCCCCHHhHHHHHhhcccCC
Q psy1955 26 RPANALKELLENSLDAK--STSIQVTVK-QGGLKLLQIQDNGTGIRKEDMDIVCERFTTSK 83 (512)
Q Consensus 26 ~~~~~v~eLv~Ns~dA~--a~~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK 83 (512)
.+.+++.||+.||++|. +..|.|.+. .++...|.|.|||+||++++++.+|++|+|+|
T Consensus 244 ~l~~vl~nLl~NA~k~~~~~~~i~i~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~f~~~~ 304 (349)
T 3a0r_A 244 RIKQVLINLVQNAIEATGENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFFTTK 304 (349)
T ss_dssp HHHHHHHHHHTHHHHTTCTTCCEEEEEEEETTEEEEEEEEESCCCCGGGGTTTSSSCCCC-
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEEEEecCCEEEEEEEECCCCCChHHHhhcCCCCccCC
Confidence 47889999999999986 567888883 56677899999999999999999999999987
No 84
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=97.90 E-value=6.1e-05 Score=64.45 Aligned_cols=46 Identities=22% Similarity=0.391 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHccccCC-CCeEEEEEEeCCeeeEEEEeCCCCCCHHh
Q psy1955 26 RPANALKELLENSLDAK-STSIQVTVKQGGLKLLQIQDNGTGIRKED 71 (512)
Q Consensus 26 ~~~~~v~eLv~Ns~dA~-a~~i~i~~~~~~~~~i~v~DnG~Gi~~~~ 71 (512)
.+..++.||+.||++++ ++.|.|.+...+...|.|.|||.||+++.
T Consensus 43 ~l~~il~nll~NA~k~~~~~~i~i~~~~~~~~~i~v~D~G~gi~~~~ 89 (129)
T 3zxo_A 43 QAEAVVREAVSNAVRHAAASTLTVRVKVDDDLCIEVTDNGRGMPDEF 89 (129)
T ss_dssp HHHHHHHHHHHHCCCCSSCCEEEEEEEESSEEEEEEEECCCCCTTTT
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEEEEEcCCEEEEEecCCCCCCccc
Confidence 57789999999999976 77888888533227799999999999776
No 85
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=97.78 E-value=6e-05 Score=70.49 Aligned_cols=46 Identities=20% Similarity=0.258 Sum_probs=35.5
Q ss_pred HHHHHHHHHHccccC-CCCeEEEEEE-eCCeeeEEEEeCCCCCCHHhH
Q psy1955 27 PANALKELLENSLDA-KSTSIQVTVK-QGGLKLLQIQDNGTGIRKEDM 72 (512)
Q Consensus 27 ~~~~v~eLv~Ns~dA-~a~~i~i~~~-~~~~~~i~v~DnG~Gi~~~~~ 72 (512)
+..++.||+.||+.+ +++.|.|.+. .++...|.|.|||+||+++..
T Consensus 131 l~~il~nll~Na~k~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 178 (218)
T 3ehh_A 131 LSMCLKEAVTNVVKHSQAKTCRVDIQQLWKEVVITVSDDGTFKGEENS 178 (218)
T ss_dssp HHHHHHHHHHHHHHHTCCSEEEEEEEEETTEEEEEEEESSCCCC----
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEEEeCCEEEEEEEECCcCCCCCCC
Confidence 557899999999996 4678888883 566778999999999998875
No 86
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=97.71 E-value=5.6e-05 Score=73.05 Aligned_cols=125 Identities=26% Similarity=0.286 Sum_probs=83.1
Q ss_pred eEEEEEccCceeeEeecCCCCCCCcchhhhhhhccccCCcccccc-c----cccccccccchhhhhHhhhc-ceEEEEec
Q psy1955 315 SIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFED-L----NSISTFGFRGEALASISHVA-HLTIITKT 388 (512)
Q Consensus 315 ~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~~~~~~~TSKi~~~~d-l----~~~~t~GfRGeALaSi~~~s-~l~I~T~~ 388 (512)
.|.|.+.... ..+.|.|||.||..+++...-...++|.-..|.+ + ....-.|.-|-.++|.-.+| .|+|+||
T Consensus 120 ~I~I~~Dk~~-~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVGFySaFmVAdkV~V~Sk- 197 (272)
T 3ied_A 120 IIKIKPDKEK-KTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSSFLVSNRVEVYTK- 197 (272)
T ss_dssp CEEEEEETTT-TEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGGGGGTEEEEEEEEE-
T ss_pred EEEEEEeCCC-CEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcccceeheeeccCCEEEEEEc-
Confidence 3777776543 3689999999999999998777777775444311 1 12356788888888888887 5999999
Q ss_pred CCCCCceEEEEecCccc--cccc------ccCCCCCceEEehhhcccchhhhcccCCCh---HHHHHHHHHHHHHhh
Q psy1955 389 KTSPCAYRASYIDSKLK--DPIK------PCAGNQGTQIIAEDLFYNIPTRRKALKQPS---EEYNKIADVVSRYAV 454 (512)
Q Consensus 389 ~~~~~~~~~~~~~~~~~--~~~~------~~~~~~GTtV~V~~lF~n~PvRrk~~~~~~---~e~~~i~~~l~~yaL 454 (512)
. +..+|+|....++.- .+.. .....+||.|++. ++... .+-.+++++|..|+-
T Consensus 198 ~-dd~~~~WeS~g~gsfti~~~~~~~~~~g~~~~~GT~I~L~------------Lked~~e~le~~~ik~likkys~ 261 (272)
T 3ied_A 198 K-EDQIYRWSSDLKGSFSVNEIKKYDQEYDDIKGSGTKIILH------------LKEECDEYLEDYKLKELIKKYSE 261 (272)
T ss_dssp S-SSCEEEEEECSSSEEEEEECTTCTTCC--CCSSEEEEEEE------------ECGGGGGGGSHHHHHHHHHHHCT
T ss_pred C-CCceEEEEECCCCCEEEEECcccccccCCCCCCCcEEEEE------------ECCChHHhcCHHHHHHHHHHHHh
Confidence 4 456787766544321 1111 1246799999983 33211 123578999999984
No 87
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=97.69 E-value=8.6e-05 Score=63.10 Aligned_cols=46 Identities=22% Similarity=0.422 Sum_probs=37.3
Q ss_pred cCHHHHHHHHHHccccCC-CCeEEEEEE-eCCeeeEEEEeCCCCCCHHh
Q psy1955 25 QRPANALKELLENSLDAK-STSIQVTVK-QGGLKLLQIQDNGTGIRKED 71 (512)
Q Consensus 25 ~~~~~~v~eLv~Ns~dA~-a~~i~i~~~-~~~~~~i~v~DnG~Gi~~~~ 71 (512)
..+..++.||++||++++ ++.|.|.+. .++ ..+.|.|||.||+++.
T Consensus 38 ~~l~~il~nll~Na~k~~~~~~i~i~~~~~~~-~~i~v~D~G~gi~~~~ 85 (124)
T 3zxq_A 38 NHAEAVLREAVSNAVRHANATSLAINVSVEDD-VRVEVVDDGVGISGDI 85 (124)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCEEEEEEEEEEE-EEEEEEECCCSSCGGG
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEEEeCCC-EEEEEEECCCCCCccc
Confidence 356689999999999975 568888883 333 6799999999999876
No 88
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=97.61 E-value=9.7e-05 Score=71.35 Aligned_cols=80 Identities=11% Similarity=0.034 Sum_probs=58.4
Q ss_pred CHHHHHHHHHHccccCCCC--eEEEEE-EeCCeeeEEEEeCCCC--CCHHhHHHHHhhcccCCCCCccccccccccCCcc
Q psy1955 26 RPANALKELLENSLDAKST--SIQVTV-KQGGLKLLQIQDNGTG--IRKEDMDIVCERFTTSKLTQFEDLNSISTFGFRG 100 (512)
Q Consensus 26 ~~~~~v~eLv~Ns~dA~a~--~i~i~~-~~~~~~~i~v~DnG~G--i~~~~~~~~~~~~~tsK~~~~~d~~~~~~~G~rG 100 (512)
.+.+++.||+.||++|... .|.|.+ ..++...|.|.|+|.| |+++.++.+|.+++++|.. -.|
T Consensus 146 ~~~qvl~NLl~NA~~a~~~gg~I~v~~~~~~~~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~~~~------------G~G 213 (247)
T 4fpp_A 146 PSSRAVLNIAQIAASALPAGGVATVKGVAADGRFSIIADAKGPRARLRPEVLAGLKGEPLAEGLG------------GPW 213 (247)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEEEEEETTEEEEEEEEESTTCCCCHHHHHHHTTCCCCSSCH------------HHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEEEEEECCEEEEEEEEcCCCCCCCHHHHHHhcCCCCCCCCC------------Ccc
Confidence 4568999999999999653 677777 4566778999999988 6688888888888776532 236
Q ss_pred hhhhhhhcc-----ceEEEEEe
Q psy1955 101 EALASISHV-----AHLTIITK 117 (512)
Q Consensus 101 eaL~si~~~-----s~l~i~S~ 117 (512)
.+|+-...+ +++++.|.
T Consensus 214 LGLai~~~iv~~hGG~i~v~s~ 235 (247)
T 4fpp_A 214 VQAAYLNALVRAAGGQIAVEIG 235 (247)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHHHcCCEEEEEEc
Confidence 666533333 37999875
No 89
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=96.59 E-value=0.0048 Score=71.95 Aligned_cols=86 Identities=20% Similarity=0.268 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHcccc---CC--CCeEEEEEEe-CCeeeEEEEeCCCCCCHH--------hHHHHH-hhcccCCCCCcccc
Q psy1955 26 RPANALKELLENSLD---AK--STSIQVTVKQ-GGLKLLQIQDNGTGIRKE--------DMDIVC-ERFTTSKLTQFEDL 90 (512)
Q Consensus 26 ~~~~~v~eLv~Ns~d---A~--a~~i~i~~~~-~~~~~i~v~DnG~Gi~~~--------~~~~~~-~~~~tsK~~~~~d~ 90 (512)
-+..++-|+|+||+| || .+.|.|.++. ++ .|+|.|||.|||-+ -++.+| .-|+.+|+.+ +
T Consensus 59 GL~hl~~EildNsiDea~ag~~~~~I~V~i~~~d~--sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgKFd~--~- 133 (1177)
T 4gfh_A 59 GLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEH--TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDD--D- 133 (1177)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTT--EEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESCCCC--S-
T ss_pred eeeeEeeEEEEChHhHHhhCCCCCeEEEEEECCCC--EEEEEecCCcccccccCCCCCEeeeeeccccccccCcCC--C-
Confidence 577899999999999 44 4789999974 44 38999999999965 245554 4466667653 1
Q ss_pred ccccccCCcchhhhhhhccce-EEEEE
Q psy1955 91 NSISTFGFRGEALASISHVAH-LTIIT 116 (512)
Q Consensus 91 ~~~~~~G~rGeaL~si~~~s~-l~i~S 116 (512)
.---+=|..|-+..-.-++|. +++.+
T Consensus 134 ~ykvSGGLHGVG~svVNALS~~~~vev 160 (1177)
T 4gfh_A 134 EKKVTGGRNGYGAKLCNIFSTEFILET 160 (1177)
T ss_dssp SCCCCSCCSSCHHHHHHHTEEEEEEEE
T ss_pred CCeEeccCCChhhhHHhhcCCceEEEE
Confidence 112344778888877777774 55444
No 90
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=95.60 E-value=0.0056 Score=56.96 Aligned_cols=54 Identities=11% Similarity=0.122 Sum_probs=35.6
Q ss_pred HHHHHHHHHccccCC--------CCeEEEEEEe---CCeeeEEEEeCCCCCCHHhHHHHHhhccc
Q psy1955 28 ANALKELLENSLDAK--------STSIQVTVKQ---GGLKLLQIQDNGTGIRKEDMDIVCERFTT 81 (512)
Q Consensus 28 ~~~v~eLv~Ns~dA~--------a~~i~i~~~~---~~~~~i~v~DnG~Gi~~~~~~~~~~~~~t 81 (512)
...+.+|++|+++|- ...|.|.+.. ++...|.|.|+|+||+++.++.+|+.+++
T Consensus 107 ~~~lgnLi~na~~Ai~~~~~~~~~~~I~i~i~~~~~~~~l~i~V~d~G~~i~~e~~~~if~~~~~ 171 (192)
T 1ixm_A 107 DQKLAKLMRKLFHLFDQAVSRESENHLTVSLQTDHPDRQLILYLDFHGAFADPSAFDDIRQNGYE 171 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHBCTTSCCEEEEEEECCCSSSSCEEEEEEESCBSCGGGCC--------
T ss_pred cHHHHHHHHHHHHHHHhhhccCCCCeEEEEEEEecCCCEEEEEEEeCCCCCCHHHHHHHHhCCCC
Confidence 344577777777762 4678888854 45678999999999999999999986653
No 91
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=95.46 E-value=0.017 Score=59.66 Aligned_cols=72 Identities=22% Similarity=0.232 Sum_probs=48.1
Q ss_pred cccCHHHHHHHHHHccccCC-----CCeEEEEEEe--CCeeeEEEEeCCCCCCHHhHHHHHhhcccCCCCCccccccccc
Q psy1955 23 VIQRPANALKELLENSLDAK-----STSIQVTVKQ--GGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSIST 95 (512)
Q Consensus 23 ~i~~~~~~v~eLv~Ns~dA~-----a~~i~i~~~~--~~~~~i~v~DnG~Gi~~~~~~~~~~~~~tsK~~~~~d~~~~~~ 95 (512)
....+.-+|.||+.||+.++ ...|.|.+.. ++...|+|.|+|.|+++. +.
T Consensus 294 ~~~~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~~~~~l~i~V~D~G~g~~~~----------~~------------- 350 (399)
T 3ke6_A 294 DIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVIDRGQWKDHR----------DG------------- 350 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEECTTSEEEEEEEESCBC-----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEcCCCEEEEEEEECCCCCCCC----------CC-------------
Confidence 45678889999999999986 6788888854 457789999999999875 00
Q ss_pred cCCcchhhhhhhccce-EEEEEe
Q psy1955 96 FGFRGEALASISHVAH-LTIITK 117 (512)
Q Consensus 96 ~G~rGeaL~si~~~s~-l~i~S~ 117 (512)
-+-.|.+|+-+.++++ +.+.+.
T Consensus 351 ~~~~G~GL~lv~~l~~~~~~~~~ 373 (399)
T 3ke6_A 351 ARGRGRGLAMAEALVSEARIMHG 373 (399)
T ss_dssp ------CHHHHHTTSSEEEEEEE
T ss_pred CCCCCcHHHHHHHHHHheeeEEC
Confidence 0234667777888874 776544
No 92
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=94.56 E-value=0.098 Score=45.16 Aligned_cols=62 Identities=13% Similarity=0.259 Sum_probs=46.1
Q ss_pred cchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccC-ceeeEeecCCCCCCCcchhhhhhhccccCC
Q psy1955 283 LHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQG-GLKLLQIQDNGTGIRKEDMDIVCERFTTSK 353 (512)
Q Consensus 283 ~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~-~~~~i~v~Dng~gi~~~~l~~~~~~~~TSK 353 (512)
.+...+...+.+++.|++..+.. . |.|..... +.-.+.+.|||.|++++++..+..++.+.+
T Consensus 40 ~d~~~l~~il~nLl~NAi~~~~~-~--------i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~~f~~~~~~~ 102 (152)
T 1id0_A 40 GEQNDFVEVMGNVLDNACKYCLE-F--------VEISARQTDEHLYIVVEDDGPGIPLSKREVIFDRGQRVD 102 (152)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCSS-E--------EEEEEEECSSCEEEEEEESSSCCCGGGTTGGGSCCCCTT
T ss_pred eCHHHHHHHHHHHHHHHHHhCcC-e--------EEEEEEecCCEEEEEEEeCCCCcCHHHHHHHhccceecc
Confidence 56777888999999999987643 1 33444322 223689999999999999999888876654
No 93
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=94.52 E-value=0.1 Score=45.13 Aligned_cols=65 Identities=17% Similarity=0.284 Sum_probs=46.2
Q ss_pred eeecchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccC-ceeeEeecCCCCCCCcchhhhhhhccccC
Q psy1955 280 VHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQG-GLKLLQIQDNGTGIRKEDMDIVCERFTTS 352 (512)
Q Consensus 280 V~f~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~-~~~~i~v~Dng~gi~~~~l~~~~~~~~TS 352 (512)
....+...+...+.+++.|++..+.... |.|..... +.-.+.|.|+|.|++++++..+..++.++
T Consensus 39 ~~~~d~~~l~~il~nLl~NA~~~~~~~~--------I~i~~~~~~~~~~i~v~D~G~gi~~~~~~~if~~f~~~ 104 (150)
T 1ysr_A 39 IIVGLPAGLRLAVDNAIANAVKHGGATL--------VQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRG 104 (150)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHTTCCSE--------EEEEEEEETTEEEEEEEESSSCCCGGGHHHHHTSCC--
T ss_pred eEecCHHHHHHHHHHHHHHHHhcCCCcE--------EEEEEEecCCEEEEEEEECCCCCCHHHHHHHhcccccC
Confidence 3446677888899999999998754321 33333322 22368999999999999999998887754
No 94
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=94.47 E-value=0.096 Score=45.06 Aligned_cols=64 Identities=14% Similarity=0.204 Sum_probs=46.0
Q ss_pred cchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccC-ceeeEeecCCCCCCCcchhhhhhhccccCC
Q psy1955 283 LHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQG-GLKLLQIQDNGTGIRKEDMDIVCERFTTSK 353 (512)
Q Consensus 283 ~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~-~~~~i~v~Dng~gi~~~~l~~~~~~~~TSK 353 (512)
.+...+...+.+++.|++..+..... |.|..... +.-.+.|.|||.|++++++..+..++.+++
T Consensus 43 ~d~~~l~~il~nll~NAi~~~~~~~~-------I~i~~~~~~~~~~i~i~D~G~g~~~~~~~~~f~~~~~~~ 107 (152)
T 3a0y_A 43 ADRTRIKQVLINLVQNAIEATGENGK-------IKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFFTTK 107 (152)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHCTTCE-------EEEEEEECSSEEEEEEEEESCCCCGGGTTGGGSTTCCCC
T ss_pred ECHHHHHHHHHHHHHHHHHhcCCCCE-------EEEEEEecCCEEEEEEEeCCCCcCHHHHHhHhhhhccCC
Confidence 45677888899999999977532211 34444332 233689999999999999999988877665
No 95
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=94.44 E-value=0.08 Score=48.63 Aligned_cols=61 Identities=23% Similarity=0.347 Sum_probs=31.1
Q ss_pred cchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCceeeEeecCCCCCCCcchhhhhhhccccCC
Q psy1955 283 LHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSK 353 (512)
Q Consensus 283 ~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~l~~~~~~~~TSK 353 (512)
.+...+...+.++|.|++........ |.|.....+ +.|.|||.||+++++..++.++.+++
T Consensus 113 ~d~~~l~~il~nLl~NAi~~~~~~~~-------i~i~~~~~~---i~V~D~G~Gi~~~~~~~if~~f~~~~ 173 (222)
T 3jz3_A 113 GQPLLLSLLVRNLLDNAVRYSPQGSV-------VDVTLNADN---FIVRDNGPGVTPEALARIGERFYRPP 173 (222)
T ss_dssp ECHHHHHHHHHHHHHHHHHTCCTTCE-------EEEEECSSE---EEEECSCC------------------
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCCCe-------EEEEEccCe---EEEEECCCCCCHHHHHHHHhhhccCC
Confidence 56667888899999999987643322 455555433 89999999999999999988877643
No 96
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=94.40 E-value=0.4 Score=42.59 Aligned_cols=66 Identities=23% Similarity=0.437 Sum_probs=46.0
Q ss_pred cchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccC-ceeeEeecCCCCCCCcchhhhhhhccccCC
Q psy1955 283 LHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQG-GLKLLQIQDNGTGIRKEDMDIVCERFTTSK 353 (512)
Q Consensus 283 ~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~-~~~~i~v~Dng~gi~~~~l~~~~~~~~TSK 353 (512)
.+...+...+.++|.|++........ +.|.|..... +.-.+.|.|||.|++++++..+..++.+.+
T Consensus 39 ~d~~~l~~il~nLl~NAi~~~~~~~~-----i~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~~ 105 (177)
T 3sl2_A 39 IDQDKITQVLDNIISNALKYSPEGGH-----VTFSIDVNEEEELLYISVKDEGIGIPKKDVEKVFDRFYRVD 105 (177)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCTTCC-----EEEEEEEETTTTEEEEEEECCSSCCCTTTTTTTTSTTCCCC
T ss_pred eCHHHHHHHHHHHHHHHHHhCCCCCe-----EEEEEEEccCCCEEEEEEEECCCCCCHHHHHHHHhhhccCC
Confidence 35677888899999999987643211 1133332332 333689999999999999999888876543
No 97
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=93.96 E-value=0.11 Score=45.53 Aligned_cols=94 Identities=19% Similarity=0.290 Sum_probs=61.7
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEEEeeCCCceEEEeecCCCcceeecchhhHHHHHHHHHHHHhcCCCCcceeecceeeEE
Q psy1955 238 IKRMIEQVYSIYLPKGSFPFVYLSLCMDPKNVDVNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQ 317 (512)
Q Consensus 238 i~k~I~~~Y~~~l~~~~~P~~~L~i~ipp~~iDVNvhP~K~eV~f~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~ 317 (512)
+...+.++...+.+. ...+++++.+....|. .+...+...+.+++.|++..+. .. |.
T Consensus 12 l~~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~v~-~d~~~l~~il~nll~NAik~~~-~~--------I~ 68 (161)
T 1bxd_A 12 LNAVLGEVIAAESGY-------------EREIETALYPGSIEVK-MHPLSIKRAVANMVVNAARYGN-GW--------IK 68 (161)
T ss_dssp HHHHHHHHHHHHCSS-------------SCCEEEECCSSCCCEE-ECHHHHHHHHHHHHHHHHTTCC-SC--------EE
T ss_pred HHHHHHHHHHHhhhh-------------cceEEEEecCCCceEE-ECHHHHHHHHHHHHHHHHhhcC-Ce--------EE
Confidence 566677766665322 1234444444444444 5677888999999999998762 11 33
Q ss_pred EEEccC-ceeeEeecCCCCCCCcchhhhhhhccccCCc
Q psy1955 318 VTVKQG-GLKLLQIQDNGTGIRKEDMDIVCERFTTSKL 354 (512)
Q Consensus 318 i~~~~~-~~~~i~v~Dng~gi~~~~l~~~~~~~~TSKi 354 (512)
|..... +.-.+.|.|||.|++++++..+..++.+.+-
T Consensus 69 i~~~~~~~~~~i~i~D~G~gi~~~~~~~~f~~f~~~~~ 106 (161)
T 1bxd_A 69 VSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDS 106 (161)
T ss_dssp EEEEEETTEEEEEEEEESSCSCTTGGGCSSCCCCCCSC
T ss_pred EEEEEcCCEEEEEEEeCCCCCCHHHHHHhCCCceeCCC
Confidence 333322 2336899999999999999999888777653
No 98
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=93.64 E-value=0.13 Score=44.48 Aligned_cols=64 Identities=16% Similarity=0.239 Sum_probs=31.2
Q ss_pred cchhhHHHHHHHHHHHHhcCCCC-cceeecceeeEEEEEccCc-----------eeeEeecCCCCCCCcchhhhhhhccc
Q psy1955 283 LHEDTIIERVQSMLEKTLLGSNT-SRVFYTQSTSIQVTVKQGG-----------LKLLQIQDNGTGIRKEDMDIVCERFT 350 (512)
Q Consensus 283 ~~~~~I~~~I~~~l~~~l~~~~~-~r~~~~q~~~i~i~~~~~~-----------~~~i~v~Dng~gi~~~~l~~~~~~~~ 350 (512)
.+...+...+.+++.|++..... .. . |.|.....+ .-.+.|.|+|.|++++++..+..++.
T Consensus 44 ~d~~~l~~il~nLl~NAik~~~~~~~-----~--I~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~ 116 (160)
T 1r62_A 44 HDPDQIEQVLLNIVRNALQALGPEGG-----E--IILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMV 116 (160)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHGGGCE-----E--EEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC-------------
T ss_pred eCHHHHHHHHHHHHHHHHHHhhccCC-----e--EEEEEeccccccccccccccEEEEEEEeCCCCCCHHHHHHhhCccc
Confidence 56777888899999999876532 11 1 333332211 23578999999999999999988877
Q ss_pred cCC
Q psy1955 351 TSK 353 (512)
Q Consensus 351 TSK 353 (512)
+++
T Consensus 117 ~~~ 119 (160)
T 1r62_A 117 SGR 119 (160)
T ss_dssp ---
T ss_pred cCC
Confidence 664
No 99
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=93.42 E-value=0.2 Score=46.64 Aligned_cols=64 Identities=22% Similarity=0.373 Sum_probs=47.1
Q ss_pred cchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEcc-CceeeEeecCCCCCCCcchhhhhhhccccCC
Q psy1955 283 LHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQ-GGLKLLQIQDNGTGIRKEDMDIVCERFTTSK 353 (512)
Q Consensus 283 ~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~-~~~~~i~v~Dng~gi~~~~l~~~~~~~~TSK 353 (512)
.+...+...+.+++.|++........ |.|.... .+.-.+.|.|||.|++++++..++.++.++|
T Consensus 119 ~d~~~l~~il~nLl~NA~~~~~~~~~-------i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~if~~~~~~~ 183 (244)
T 3d36_A 119 GEREKFRQCLLNVMKNAIEAMPNGGT-------LQVYVSIDNGRVLIRIADTGVGMTKEQLERLGEPYFTTK 183 (244)
T ss_dssp ECHHHHHHHHHHHHHHHHHTCTTCEE-------EEEEEEEETTEEEEEEEECSSCCCHHHHHHTTSTTCCSS
T ss_pred eCHHHHHHHHHHHHHHHHHhccCCCe-------EEEEEEEeCCEEEEEEEecCCCCCHHHHHHHhcccccCC
Confidence 56777888999999999987632221 3333332 2334689999999999999999998887765
No 100
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=93.19 E-value=0.27 Score=46.52 Aligned_cols=67 Identities=21% Similarity=0.335 Sum_probs=46.9
Q ss_pred cchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEcc-CceeeEeecCCCCCCCcchhhhhhhccccCC
Q psy1955 283 LHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQ-GGLKLLQIQDNGTGIRKEDMDIVCERFTTSK 353 (512)
Q Consensus 283 ~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~-~~~~~i~v~Dng~gi~~~~l~~~~~~~~TSK 353 (512)
.+...+...+.++|.|++..+..... ...|.|.... .+.-.+.|.|||+||+++++.+++.++++.+
T Consensus 134 ~d~~~l~~il~NLl~NAik~~~~~~~----~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~ 201 (258)
T 2c2a_A 134 IDPTRIRQVLLNLLNNGVKYSKKDAP----DKYVKVILDEKDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVD 201 (258)
T ss_dssp ECHHHHHHHHHHHHHHHHHTCCTTCT----TCEEEEEEEEETTEEEEEEEECSSCCCGGGTTGGGSTTCCCC
T ss_pred eCHHHHHHHHHHHHHHHHhcCcCCCC----ceeEEEEEecCCCeEEEEEEecCCCCCHHHHHhhccccccCC
Confidence 46778889999999999987542210 0013333332 2233689999999999999999999987665
No 101
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=93.11 E-value=0.2 Score=47.63 Aligned_cols=64 Identities=14% Similarity=0.295 Sum_probs=46.9
Q ss_pred cchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccC-ceeeEeecCCCCCCCcchhhhhhhccccCC
Q psy1955 283 LHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQG-GLKLLQIQDNGTGIRKEDMDIVCERFTTSK 353 (512)
Q Consensus 283 ~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~-~~~~i~v~Dng~gi~~~~l~~~~~~~~TSK 353 (512)
.+...+...+.++|.|++........ |.|..... +.-.+.|.|||.||+++.+..++.++.++|
T Consensus 151 ~d~~~l~~il~nLl~NA~~~~~~~~~-------I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~ 215 (268)
T 4ew8_A 151 GDGKRLAQTLDHLVENALRQTPPGGR-------VTLSARRALGEVRLDVSDTGRGVPFHVQAHIFDRFVGRD 215 (268)
T ss_dssp ECHHHHHHHHHHHHHHHHHHSCTTCE-------EEEEEEECSSEEEEEEEESSCCCCHHHHTTTTSTTCCCS
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCCCE-------EEEEEEecCCEEEEEEEcCCCCCCHHHHHHHHHHHhcCC
Confidence 56777889999999999987643211 34444332 233689999999999999999988877654
No 102
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=92.67 E-value=0.15 Score=50.28 Aligned_cols=64 Identities=14% Similarity=0.204 Sum_probs=46.2
Q ss_pred cchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccC-ceeeEeecCCCCCCCcchhhhhhhccccCC
Q psy1955 283 LHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQG-GLKLLQIQDNGTGIRKEDMDIVCERFTTSK 353 (512)
Q Consensus 283 ~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~-~~~~i~v~Dng~gi~~~~l~~~~~~~~TSK 353 (512)
.+...+...+.+++.|++........ |.|..... +.-.+.|.|||.||+++++.+++.++.|+|
T Consensus 240 ~d~~~l~~vl~nLl~NA~k~~~~~~~-------i~i~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~f~~~~ 304 (349)
T 3a0r_A 240 ADRTRIKQVLINLVQNAIEATGENGK-------IKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFFTTK 304 (349)
T ss_dssp ECHHHHHHHHHHHHTHHHHTTCTTCC-------EEEEEEEETTEEEEEEEEESCCCCGGGGTTTSSSCCCC-
T ss_pred eCHHHHHHHHHHHHHHHHHhccCCCE-------EEEEEEecCCEEEEEEEECCCCCChHHHhhcCCCCccCC
Confidence 45677888899999999987632211 33433322 333689999999999999999999988776
No 103
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=92.41 E-value=0.44 Score=48.93 Aligned_cols=74 Identities=14% Similarity=0.170 Sum_probs=48.9
Q ss_pred eecchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCc-eeeEeecCCCCCCCcchhhhhhhccccCCc
Q psy1955 281 HFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGG-LKLLQIQDNGTGIRKEDMDIVCERFTTSKL 354 (512)
Q Consensus 281 ~f~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~-~~~i~v~Dng~gi~~~~l~~~~~~~~TSKi 354 (512)
...+...+...+.++|.|++........-......|.|.....+ .-.+.|.|+|.||+++++.+++.++++.+-
T Consensus 237 v~~d~~~L~~il~NLl~NAik~t~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~e~~~~if~~f~~~~~ 311 (407)
T 2q8g_A 237 VVYVPSHLYHMVFELFKNAMRATMEHHANRGVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAP 311 (407)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHHSTTTCCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCTTTTCCC
T ss_pred EEEcHHHHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEeCCCEEEEEEEecCCCCCHHHHHHHhCccccCCC
Confidence 34577888888999999998764321100000001444444332 336899999999999999999999887764
No 104
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=92.40 E-value=0.18 Score=45.54 Aligned_cols=57 Identities=16% Similarity=0.301 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHHHhcCCCCcce---e--ecceeeEEEEEccC-ceeeEeecCCCCCCCcchh
Q psy1955 286 DTIIERVQSMLEKTLLGSNTSRV---F--YTQSTSIQVTVKQG-GLKLLQIQDNGTGIRKEDM 342 (512)
Q Consensus 286 ~~I~~~I~~~l~~~l~~~~~~r~---~--~~q~~~i~i~~~~~-~~~~i~v~Dng~gi~~~~l 342 (512)
..+...+.++|.|++..+..... . ..+...|.|..... +.-.+.|.|||+||+++++
T Consensus 46 ~~l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~ 108 (189)
T 1i58_A 46 EEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKI 108 (189)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEEEEEEEEETTEEEEEEEECSSCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEEEEEecCCEEEEEEEeCCCCcCHHHH
Confidence 44555588888888876411000 0 00001133433322 2336899999999999987
No 105
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=92.18 E-value=0.23 Score=50.78 Aligned_cols=73 Identities=14% Similarity=0.136 Sum_probs=48.5
Q ss_pred ecchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCc-eeeEeecCCCCCCCcchhhhhhhccccCCc
Q psy1955 282 FLHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGG-LKLLQIQDNGTGIRKEDMDIVCERFTTSKL 354 (512)
Q Consensus 282 f~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~-~~~i~v~Dng~gi~~~~l~~~~~~~~TSKi 354 (512)
..+...+...+.++|.|++........-......|.|.....+ .-.+.|.|+|.||+++++.+++.++++.+-
T Consensus 225 ~~d~~~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~if~~f~~~~~ 298 (394)
T 2e0a_A 225 VYVPSHLHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAP 298 (394)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCEEEEEEECSSEEEEEEEECSCCCCGGGHHHHTSTTCCSSC
T ss_pred EEcHHHHHHHHHHHHHHHHHHHHhcccccCCCCCEEEEEEeCCCEEEEEEEeCCCCcCHHHHHHHhCcCccCCC
Confidence 3567888888999999998764321100000001444444332 336899999999999999999999887763
No 106
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=91.53 E-value=0.2 Score=42.32 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=35.6
Q ss_pred cchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccC-ceeeEeecCCCCCCCcchh
Q psy1955 283 LHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQG-GLKLLQIQDNGTGIRKEDM 342 (512)
Q Consensus 283 ~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~-~~~~i~v~Dng~gi~~~~l 342 (512)
.+...+...+.+++.|++..+...+ |.|..... +.-.+.|.|||.|++++++
T Consensus 36 ~~~~~l~~il~nll~Na~k~~~~~~--------i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 88 (128)
T 3ehg_A 36 LNENILSMCLKEAVTNVVKHSQAKT--------CRVDIQQLWKEVVITVSDDGTFKGEENS 88 (128)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSE--------EEEEEEEETTEEEEEEEESSCCCSCSSC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcE--------EEEEEEEeCCEEEEEEEECCcCcCcccC
Confidence 3556677789999999997754322 33333322 2336899999999998876
No 107
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=91.40 E-value=0.16 Score=51.80 Aligned_cols=72 Identities=17% Similarity=0.232 Sum_probs=46.4
Q ss_pred cchhhHHHHHHHHHHHHhcCCCCcce-eecceeeEEEEEccCc-eeeEeecCCCCCCCcchhhhhhhccccCCc
Q psy1955 283 LHEDTIIERVQSMLEKTLLGSNTSRV-FYTQSTSIQVTVKQGG-LKLLQIQDNGTGIRKEDMDIVCERFTTSKL 354 (512)
Q Consensus 283 ~~~~~I~~~I~~~l~~~l~~~~~~r~-~~~q~~~i~i~~~~~~-~~~i~v~Dng~gi~~~~l~~~~~~~~TSKi 354 (512)
.+...+...+.++|.|++.+...... .......|.|.....+ .-.+.|.|+|.||+++++.+++.+++|.+=
T Consensus 234 ~~~~~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~ 307 (388)
T 1gkz_A 234 FIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAE 307 (388)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEECSSEEEEEEECCSCCCCTTTTTTTTSTTCCCC-
T ss_pred ecHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEEeCCCEEEEEEEEeCCCcCHHHHHHhcCcccccCC
Confidence 34677778888888888876432100 0000001444444332 336899999999999999999999887764
No 108
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=90.99 E-value=0.34 Score=49.49 Aligned_cols=72 Identities=11% Similarity=0.148 Sum_probs=47.6
Q ss_pred cchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCc-eeeEeecCCCCCCCcchhhhhhhccccCCc
Q psy1955 283 LHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGG-LKLLQIQDNGTGIRKEDMDIVCERFTTSKL 354 (512)
Q Consensus 283 ~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~-~~~i~v~Dng~gi~~~~l~~~~~~~~TSKi 354 (512)
.+...+...+.++|.|++........-......|.|.....+ .-.+.|.|+|.||+++++.+++.++++.+-
T Consensus 227 ~d~~~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~ 299 (394)
T 2btz_A 227 YVPSHLYHMLFELFKNAMRATVESHESSLILPPIKVMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAP 299 (394)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHTTTTCSCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHHHHTCTTTTCCC
T ss_pred ecHHHHHHHHHHHHHHHHHHhhhccccCCCCCCEEEEEEeCCCEEEEEEEeCCCCCCHHHHHHHhcccccCCC
Confidence 567888888999999998764321100000001444444332 236899999999999999999999887653
No 109
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=90.91 E-value=0.6 Score=38.65 Aligned_cols=64 Identities=16% Similarity=0.231 Sum_probs=40.3
Q ss_pred EEeecCCCcceeecchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccCceeeEeecCCCCCCCcch
Q psy1955 270 DVNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQGGLKLLQIQDNGTGIRKED 341 (512)
Q Consensus 270 DVNvhP~K~eV~f~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~ 341 (512)
++.+.++-..+.......+...+.+++.|++..+...+ +.|.+..... -.+.|.|||.|+++++
T Consensus 22 ~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~------i~i~~~~~~~--~~i~v~D~G~gi~~~~ 85 (124)
T 3zxq_A 22 TVQYTGPLSVVDTVLANHAEAVLREAVSNAVRHANATS------LAINVSVEDD--VRVEVVDDGVGISGDI 85 (124)
T ss_dssp EEEEESCGGGCCHHHHHHHHHHHHHHHHHHHTCTTCCE------EEEEEEEEEE--EEEEEEECCCSSCGGG
T ss_pred EEEeeCccccccHHHHHHHHHHHHHHHHHHHHhCCCCE------EEEEEEeCCC--EEEEEEECCCCCCccc
Confidence 34444333334334467778889999999998765432 1133333322 5678999999999876
No 110
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=90.42 E-value=1.4 Score=51.49 Aligned_cols=123 Identities=16% Similarity=0.161 Sum_probs=70.3
Q ss_pred hHHHHHHHHHHHHhcC----CCCcceeecceeeEEEEEccCceeeEeecCCCCCCCcch---------hhhhhhccccCC
Q psy1955 287 TIIERVQSMLEKTLLG----SNTSRVFYTQSTSIQVTVKQGGLKLLQIQDNGTGIRKED---------MDIVCERFTTSK 353 (512)
Q Consensus 287 ~I~~~I~~~l~~~l~~----~~~~r~~~~q~~~i~i~~~~~~~~~i~v~Dng~gi~~~~---------l~~~~~~~~TSK 353 (512)
-++..+.+.|.|+.+. ....+ |+|++... ...++|.|||.||+-+- -+.++.-||-+|
T Consensus 59 GL~hl~~EildNsiDea~ag~~~~~--------I~V~i~~~-d~sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgK 129 (1177)
T 4gfh_A 59 GLFKIFDEILVNAADNKVRDPSMKR--------IDVNIHAE-EHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSN 129 (1177)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCE--------EEEEEETT-TTEEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESC
T ss_pred eeeeEeeEEEEChHhHHhhCCCCCe--------EEEEEECC-CCEEEEEecCCcccccccCCCCCEeeeeeccccccccC
Confidence 4455555555555543 22222 55665421 12699999999998542 122455689999
Q ss_pred ccccccccccccccccchhhhhHhhhcc-eEEEEecCCCCCceEEEEecCccccc---cccc-CCCCCceEEe
Q psy1955 354 LTQFEDLNSISTFGFRGEALASISHVAH-LTIITKTKTSPCAYRASYIDSKLKDP---IKPC-AGNQGTQIIA 421 (512)
Q Consensus 354 i~~~~dl~~~~t~GfRGeALaSi~~~s~-l~I~T~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~GTtV~V 421 (512)
+++ +-+. -+=|-.|--.+..-++|+ +.+.+....+-..|...|.+|..... ...+ ..+.||+|+.
T Consensus 130 Fd~--~~yk-vSGGLHGVG~svVNALS~~~~vev~~~r~Gk~y~q~f~~g~~~~~~~~i~~~~~~~tGT~V~F 199 (1177)
T 4gfh_A 130 YDD--DEKK-VTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPPKITSYKKGPSYTKVTF 199 (1177)
T ss_dssp CCC--SSCC-CCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEECCSSCCCEEEEE
T ss_pred cCC--CCCe-EeccCCChhhhHHhhcCCceEEEEEEEcCCEEEEEEEECCcccCCCCeeecCCCCCCceEEEE
Confidence 874 2222 234667766666666774 66665543333457778887754321 1122 3467999986
No 111
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=89.58 E-value=0.39 Score=49.58 Aligned_cols=73 Identities=10% Similarity=0.115 Sum_probs=46.7
Q ss_pred ecchhhHHHHHHHHHHHHhcCCCCccee-ecceeeEEEEEccCc-eeeEeecCCCCCCCcchhhhhhhccccCCc
Q psy1955 282 FLHEDTIIERVQSMLEKTLLGSNTSRVF-YTQSTSIQVTVKQGG-LKLLQIQDNGTGIRKEDMDIVCERFTTSKL 354 (512)
Q Consensus 282 f~~~~~I~~~I~~~l~~~l~~~~~~r~~-~~q~~~i~i~~~~~~-~~~i~v~Dng~gi~~~~l~~~~~~~~TSKi 354 (512)
..+...+...+.++|.|++........- ......|.|.....+ .-.+.|.|+|.||+++++.+++.++++.+-
T Consensus 248 ~~d~~~L~~vl~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~ 322 (419)
T 1y8o_A 248 VYVPSHLFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLFNYMYSTAP 322 (419)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCTTTC---
T ss_pred EEcHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEeCCCEEEEEEEECCCCCCHHHHHHHhCcccccCC
Confidence 3577888888999999998764321000 000001444444332 236899999999999999999999887653
No 112
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=88.56 E-value=1.1 Score=45.66 Aligned_cols=57 Identities=19% Similarity=0.385 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHHHhcCCCCc---cee--ecceeeEEEEEcc-CceeeEeecCCCCCCCcchh
Q psy1955 286 DTIIERVQSMLEKTLLGSNTS---RVF--YTQSTSIQVTVKQ-GGLKLLQIQDNGTGIRKEDM 342 (512)
Q Consensus 286 ~~I~~~I~~~l~~~l~~~~~~---r~~--~~q~~~i~i~~~~-~~~~~i~v~Dng~gi~~~~l 342 (512)
..+...+.+++.|+++.+-.. |.- ..+.-.|.|.... .+.-.+.|.|||.||+++++
T Consensus 105 ~~l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~~~~~~v~i~V~D~G~Gi~~~~~ 167 (379)
T 1b3q_A 105 EEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKI 167 (379)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEEETTEEEEEEEECSCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEEEeCCEEEEEEEECCCCCCHHHH
Confidence 445555888888888764110 000 0001113344332 23336899999999999987
No 113
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=87.80 E-value=0.94 Score=37.62 Aligned_cols=83 Identities=17% Similarity=0.178 Sum_probs=48.9
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEEEeeCCCceEEEeecCCCcceeecchhhHHHHHHHHHHHHhcCCCCcceeecceeeEE
Q psy1955 238 IKRMIEQVYSIYLPKGSFPFVYLSLCMDPKNVDVNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQ 317 (512)
Q Consensus 238 i~k~I~~~Y~~~l~~~~~P~~~L~i~ipp~~iDVNvhP~K~eV~f~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~ 317 (512)
+...+.+....+... . -.+++.+.+.-..+.-.+...+...+.+++.|++..+.... |.
T Consensus 7 l~~~l~~~~~~~~~~--~-----------~~~~~~~~~~~~~~~~~~~~~l~~il~nll~NA~k~~~~~~--------i~ 65 (129)
T 3zxo_A 7 LRQRIDAAVAQFADS--G-----------LRTSVQFVGPLSVVDSALADQAEAVVREAVSNAVRHAAAST--------LT 65 (129)
T ss_dssp HHHHHHHHHHHHSCT--T-----------SEEEEEEESCGGGSCHHHHHHHHHHHHHHHHHCCCCSSCCE--------EE
T ss_pred HHHHHHHHHHHHhhc--C-----------ceEEEEecCCcccCCHHHHHHHHHHHHHHHHHHHHhCCCce--------EE
Confidence 456666666665211 1 12334444443334434466788889999999988763322 33
Q ss_pred EEEccCceeeEeecCCCCCCCcch
Q psy1955 318 VTVKQGGLKLLQIQDNGTGIRKED 341 (512)
Q Consensus 318 i~~~~~~~~~i~v~Dng~gi~~~~ 341 (512)
|.....+.-.+.+.|||.|+++++
T Consensus 66 i~~~~~~~~~i~v~D~G~gi~~~~ 89 (129)
T 3zxo_A 66 VRVKVDDDLCIEVTDNGRGMPDEF 89 (129)
T ss_dssp EEEEESSEEEEEEEECCCCCTTTT
T ss_pred EEEEEcCCEEEEEecCCCCCCccc
Confidence 333322225678999999998765
No 114
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=86.83 E-value=0.68 Score=42.34 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=32.1
Q ss_pred cchhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEcc-CceeeEeecCCCCCCCcchh
Q psy1955 283 LHEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQ-GGLKLLQIQDNGTGIRKEDM 342 (512)
Q Consensus 283 ~~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~-~~~~~i~v~Dng~gi~~~~l 342 (512)
.+...+...+.+++.|++..+...+ |.|.... .+.-.+.|.|||+||++++.
T Consensus 126 ~~~~~l~~il~nll~Na~k~~~~~~--------i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 178 (218)
T 3ehh_A 126 LNENILSMCLKEAVTNVVKHSQAKT--------CRVDIQQLWKEVVITVSDDGTFKGEENS 178 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSE--------EEEEEEEETTEEEEEEEESSCCCC----
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCE--------EEEEEEEeCCEEEEEEEECCcCCCCCCC
Confidence 3455667789999999987764322 3333332 23346899999999998876
No 115
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=83.76 E-value=1.5 Score=37.43 Aligned_cols=64 Identities=19% Similarity=0.304 Sum_probs=38.7
Q ss_pred chhhHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEcc-CceeeEeecCCCCCCCcchhhhhhhccccCC
Q psy1955 284 HEDTIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQ-GGLKLLQIQDNGTGIRKEDMDIVCERFTTSK 353 (512)
Q Consensus 284 ~~~~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~-~~~~~i~v~Dng~gi~~~~l~~~~~~~~TSK 353 (512)
+...+...+.+++.|++..+.... .... |.|.... .+.-.+.|.|||.|++ ++..+..++.+++
T Consensus 36 ~~~~l~~il~~l~~Nai~h~~~~~--~~~~--I~i~~~~~~~~~~i~V~D~G~g~~--~~~~~~~~~~~~~ 100 (145)
T 1th8_A 36 ELTEIKTVVSEAVTNAIIHGYNND--PNGI--VSISVIIEDGVVHLTVRDEGVGIP--DIEEARQPLFTTK 100 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTC--TTSE--EEEEEEEETTEEEEEEEECSSCCS--CHHHHTCCC----
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCC--CCCE--EEEEEEEeCCEEEEEEEECCCCcC--hHHHhhcccccCC
Confidence 445677788999999987654311 0011 3333332 2334689999999999 7777777766655
No 116
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=67.15 E-value=11 Score=35.22 Aligned_cols=60 Identities=12% Similarity=0.009 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHhcCCCCcceeecceeeEEEEEccC-ceeeEeecCCCCC--CCcchhhhhhhccccCC
Q psy1955 287 TIIERVQSMLEKTLLGSNTSRVFYTQSTSIQVTVKQG-GLKLLQIQDNGTG--IRKEDMDIVCERFTTSK 353 (512)
Q Consensus 287 ~I~~~I~~~l~~~l~~~~~~r~~~~q~~~i~i~~~~~-~~~~i~v~Dng~g--i~~~~l~~~~~~~~TSK 353 (512)
.+...+.+++.|++++....-. |.|..... +.-.+.|.|+|.| ++++.+.+....+.++|
T Consensus 146 ~~~qvl~NLl~NA~~a~~~gg~-------I~v~~~~~~~~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~~ 208 (247)
T 4fpp_A 146 PSSRAVLNIAQIAASALPAGGV-------ATVKGVAADGRFSIIADAKGPRARLRPEVLAGLKGEPLAEG 208 (247)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCE-------EEEEEEEETTEEEEEEEEESTTCCCCHHHHHHHTTCCCCSS
T ss_pred HHHHHHHHHHHHHHHhcCCCCe-------EEEEEEEECCEEEEEEEEcCCCCCCCHHHHHHhcCCCCCCC
Confidence 3456677888888876533211 33333322 3335677777766 77787888877766655
No 117
>2w0p_A Filamin-A; alternative splicing, cytoskeleton/complex, phosphoprotein, disease mutation, immunoglobulin like, zinc, complex; 1.90A {Homo sapiens} SCOP: b.1.18.10 PDB: 2brq_A* 2jf1_A 3isw_A
Probab=29.22 E-value=54 Score=25.74 Aligned_cols=30 Identities=13% Similarity=0.241 Sum_probs=22.4
Q ss_pred cccCCCCeEEEEEEeCCeeeEEEEeCCCCC
Q psy1955 38 SLDAKSTSIQVTVKQGGLKLLQIQDNGTGI 67 (512)
Q Consensus 38 s~dA~a~~i~i~~~~~~~~~i~v~DnG~Gi 67 (512)
+.|||...+.|.+.......+.+.||+.|.
T Consensus 28 ~~dag~~~~~v~v~gp~~~~~~v~d~~dGt 57 (94)
T 2w0p_A 28 TREAGAGGLAIAVEGPSKAEISFEDRKDGS 57 (94)
T ss_dssp CGGGCSCCEEEEEEESSCCEEEEEECTTSC
T ss_pred EcCCCCCcEEEEEECCCCCeEEEEECCCCE
Confidence 457788888888865444568899999884
No 118
>2bp3_A Filamin A; structural protein, cytoskeleton/complex, actin binding protein, cytoskeleton, complex; 2.32A {Homo sapiens} SCOP: b.1.18.10 PDB: 2aav_A
Probab=24.88 E-value=65 Score=25.34 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=22.2
Q ss_pred ccccCCCCeEEEEEEeCCeeeEEEEeCCCCC
Q psy1955 37 NSLDAKSTSIQVTVKQGGLKLLQIQDNGTGI 67 (512)
Q Consensus 37 Ns~dA~a~~i~i~~~~~~~~~i~v~DnG~Gi 67 (512)
.+.|||...+.+.+.......+.+.||+.|.
T Consensus 30 ~t~dag~~~l~v~v~~p~~~~~~v~d~~dGt 60 (97)
T 2bp3_A 30 NTKDAGEGGLSLAIEGPSKAEISCTDNQDGT 60 (97)
T ss_dssp ECTTCCSEEEEEEEEESSCCEEEEEECSSSE
T ss_pred EECCCCCCcEEEEEECCCCCEEEEEECCCCE
Confidence 3557787788888865544567889999873
No 119
>2ee6_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.25 E-value=59 Score=26.11 Aligned_cols=31 Identities=13% Similarity=0.203 Sum_probs=23.3
Q ss_pred ccccCCCCeEEEEEEeCCeeeEEEEeCCCCC
Q psy1955 37 NSLDAKSTSIQVTVKQGGLKLLQIQDNGTGI 67 (512)
Q Consensus 37 Ns~dA~a~~i~i~~~~~~~~~i~v~DnG~Gi 67 (512)
.+.|||...+.+.+.......+.+.|++.|-
T Consensus 35 ~t~dag~~~l~v~v~~p~~~~v~v~d~~dGt 65 (105)
T 2ee6_A 35 WTREAGAGGLSIAVEGPSKAEITFDDHKNGS 65 (105)
T ss_dssp ECSSSCCCCEEEEEESSSCEEEEECCCCSSC
T ss_pred EECCCCCCcEEEEEECCCCCEEEEEECCCCE
Confidence 3567788888888865555567899999883
No 120
>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation, immun like, cytoskeleton, actin-binding, cell junction, shape; HET: CME; 2.44A {Homo sapiens} SCOP: b.1.18.0
Probab=21.92 E-value=60 Score=25.89 Aligned_cols=30 Identities=27% Similarity=0.374 Sum_probs=22.1
Q ss_pred ccccCCCCeEEEEEE--eCCeeeEEEEeCCCC
Q psy1955 37 NSLDAKSTSIQVTVK--QGGLKLLQIQDNGTG 66 (512)
Q Consensus 37 Ns~dA~a~~i~i~~~--~~~~~~i~v~DnG~G 66 (512)
.+.|||...+.|.+. .+....+.|.|||.|
T Consensus 32 ~~~~aG~~~l~v~i~~~~g~~~~~~v~d~~dG 63 (100)
T 3rgh_A 32 DCSSAGSAELTIEICSEAGLPAEVYIQDHGDG 63 (100)
T ss_dssp ECTTSCSCCEEEEEECTTSCBCEEEEEECSSS
T ss_pred EECCCCCceEEEEEECCCCCEeEEEEEeCCCC
Confidence 345788888998883 233456899999988
No 121
>2k9u_A Gamma filamin; cytoskeletal complex, alternative splicing, cell adhesion, cell junction, cell shape, cytoplasm, cytoskeleton; NMR {Homo sapiens}
Probab=21.51 E-value=67 Score=26.45 Aligned_cols=30 Identities=13% Similarity=0.221 Sum_probs=21.7
Q ss_pred ccccCCCCeEEEEEEeCCeeeEEEEeCCCC
Q psy1955 37 NSLDAKSTSIQVTVKQGGLKLLQIQDNGTG 66 (512)
Q Consensus 37 Ns~dA~a~~i~i~~~~~~~~~i~v~DnG~G 66 (512)
.+.|||...+.+.+.......+.+.||+.|
T Consensus 42 ~t~dag~~~l~v~v~~p~~~~~~v~d~~dG 71 (119)
T 2k9u_A 42 WTREAGAGGLSIAVEGPSKAEIAFEDRKDG 71 (119)
T ss_dssp ECCSSCSEEEEEEEESSSCCEEEEECCSSS
T ss_pred EECCCCCCcEEEEEeCCCCCeEEEEECCCC
Confidence 356778888888886444456788898888
Done!