RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1955
(512 letters)
>d1b63a2 d.122.1.2 (A:-2-216) DNA mismatch repair protein MutL
{Escherichia coli [TaxId: 562]}
Length = 218
Score = 142 bits (358), Expect = 6e-40
Identities = 60/168 (35%), Positives = 94/168 (55%)
Query: 313 STSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFRGEA 372
+T I + +++GG KL++I+DNG GI+K+++ + R TSK+ +DL +I + GFRGEA
Sbjct: 41 ATRIDIDIERGGAKLIRIRDNGCGIKKDELALALARHATSKIASLDDLEAIISLGFRGEA 100
Query: 373 LASISHVAHLTIITKTKTSPCAYRASYIDSKLKDPIKPCAGNQGTQIIAEDLFYNIPTRR 432
LASIS V+ LT+ ++T A++A + +KP A GT + DLFYN P RR
Sbjct: 101 LASISSVSRLTLTSRTAEQQEAWQAYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARR 160
Query: 433 KALKQPSEEYNKIADVVSRYAVHNPHVGFTLKKQNENLADIRTNVNSS 480
K L+ E+N I +++ R A+ V L + + R
Sbjct: 161 KFLRTEKTEFNHIDEIIRRIALARFDVTINLSHNGKIVRQYRAVPEGG 208
Score = 137 bits (347), Expect = 2e-38
Identities = 57/120 (47%), Positives = 88/120 (73%)
Query: 7 IKKLDETVVNRIAAGEVIQRPANALKELLENSLDAKSTSIQVTVKQGGLKLLQIQDNGTG 66
I+ L + N+IAAGEV++RPA+ +KEL+ENSLDA +T I + +++GG KL++I+DNG G
Sbjct: 5 IQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCG 64
Query: 67 IRKEDMDIVCERFTTSKLTQFEDLNSISTFGFRGEALASISHVAHLTIITKTKTSPCAYR 126
I+K+++ + R TSK+ +DL +I + GFRGEALASIS V+ LT+ ++T A++
Sbjct: 65 IKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEAWQ 124
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 203
Score = 134 bits (337), Expect = 2e-37
Identities = 49/181 (27%), Positives = 93/181 (51%), Gaps = 4/181 (2%)
Query: 313 STSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFRGEA 372
+T+I + +K G+ L+++ DNG G+ +E+ + + + TSK+ +F DL + TFGFRGEA
Sbjct: 23 ATNIDLKLKDYGVDLIEVSDNGCGVEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEA 82
Query: 373 LASISHVAHLTIITKTKTSPCAYRASYIDSKLKDPIKPCAGNQGTQIIAEDLFYNIPTRR 432
L+S+ ++ +TI T ++ R + + P +GT + + LF +P R
Sbjct: 83 LSSLCALSDVTISTCHASAKVGTRLMFDHNGKIIQKTPYPRPRGTTVSVQQLFSTLPVRH 142
Query: 433 KA-LKQPSEEYNKIADVVSRYAVHNPHVGFTLK---KQNENLADIRTNVNSSHSEVIGNI 488
K + +EY K+ V+ Y + + + + Q + + T + S E IG++
Sbjct: 143 KEFQRNIKKEYAKMVQVLHAYCIISAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSV 202
Query: 489 Y 489
+
Sbjct: 203 F 203
Score = 111 bits (277), Expect = 8e-29
Identities = 42/107 (39%), Positives = 71/107 (66%)
Query: 21 GEVIQRPANALKELLENSLDAKSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFT 80
G+V+ + A+KEL+ENSLDA +T+I + +K G+ L+++ DNG G+ +E+ + + +
Sbjct: 1 GQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCGVEEENFEGLTLKHH 60
Query: 81 TSKLTQFEDLNSISTFGFRGEALASISHVAHLTIITKTKTSPCAYRW 127
TSK+ +F DL + TFGFRGEAL+S+ ++ +TI T ++ R
Sbjct: 61 TSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHASAKVGTRL 107
>d1b63a1 d.14.1.3 (A:217-331) DNA mismatch repair protein MutL
{Escherichia coli [TaxId: 562]}
Length = 115
Score = 83.5 bits (206), Expect = 4e-20
Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 10/110 (9%)
Query: 199 ELLSVEGTDDAFQLKVTGWITNVNFSTKKMTFL--LFINNP------IKRMIEQVYSIYL 250
+ L++E + GW+ + N +T + + ++N I I Q L
Sbjct: 7 QALAIEWQHGDL--TLRGWVADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKL 64
Query: 251 PKGSFPFVYLSLCMDPKNVDVNVHPTKHEVHFLHEDTIIERVQSMLEKTL 300
P L L +DP VDVNVHP KHEV F + + + + L
Sbjct: 65 GADQQPAFVLYLEIDPHQVDVNVHPAKHEVRFHQSRLVHDFIYQGVLSVL 114
>d1h7sa1 d.14.1.3 (A:232-365) DNA mismatch repair protein PMS2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 134
Score = 78.5 bits (193), Expect = 4e-18
Identities = 32/142 (22%), Positives = 63/142 (44%), Gaps = 25/142 (17%)
Query: 168 TLVPLMKSQYQPSEKIVERACLLEIASLNNLELLSVEGTDDAFQLKVTGWITNVNFSTKK 227
+L+P Q PS+ + E L +L+NL ++G+I+ +
Sbjct: 7 SLIPF--VQLPPSDSVCEEYGLSCSDALHNL-------------FYISGFISQCTHGVGR 51
Query: 228 MT---FLLFINNP------IKRMIEQVYSIYLPKGSFPFVYLSLCMDPKNVDVNVHPTKH 278
+ FIN + R++ +VY +Y + +PFV L++ +D + VD+NV P K
Sbjct: 52 SSTDRQFFFINRRPCDPAKVCRLVNEVYHMY-NRHQYPFVVLNISVDSECVDINVTPDKR 110
Query: 279 EVHFLHEDTIIERVQSMLEKTL 300
++ E ++ +++ L
Sbjct: 111 QILLQEEKLLLAVLKTSLIGMF 132
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon
Sulfolobus shibatae [TaxId: 2286]}
Length = 219
Score = 80.6 bits (198), Expect = 5e-18
Identities = 24/159 (15%), Positives = 47/159 (29%), Gaps = 4/159 (2%)
Query: 313 STSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFRGEA 372
+I + + + + DNG GI +++ R S + G +
Sbjct: 48 KITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAV 107
Query: 373 LASISH-VAHLTIITKTKTSPCAYRASYIDSKLKDPIKPCAGNQGTQIIAEDLFYNIPTR 431
L S H + I T S Y K+ + + F+
Sbjct: 108 LYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNE---PIIVERGSVENTRGFHGTSVA 164
Query: 432 RKALKQPSEEYNKIADVVSRYAVHNPHVGFTLKKQNENL 470
+ ++I + + R + P+ F K N+
Sbjct: 165 ISIPGDWPKAKSRIYEYIKRTYIITPYAEFIFKDPEGNV 203
Score = 49.4 bits (117), Expect = 2e-07
Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 10/109 (9%)
Query: 30 ALKELLENSLDA---------KSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFT 80
++EL+ENSLDA +I + + + + DNG GI +++ R
Sbjct: 26 TVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVL 85
Query: 81 TSKLTQFEDLNSISTFGFRGEALASISH-VAHLTIITKTKTSPCAYRWC 128
S + G + L S H + I T S Y +
Sbjct: 86 YSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFK 134
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor
EnvZ {Escherichia coli [TaxId: 562]}
Length = 161
Score = 38.3 bits (89), Expect = 6e-04
Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 30 ALKELLENSLDAKSTSIQVTVKQGGLKL-LQIQDNGTGIRKEDMDIVCERFTTSK 83
A+ ++ N+ + I+V+ + Q++D+G GI E + + F
Sbjct: 51 AVANMVVNAARYGNGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGD 105
Score = 32.2 bits (73), Expect = 0.073
Identities = 8/44 (18%), Positives = 15/44 (34%)
Query: 310 YTQSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSK 353
Y + + Q++D+G GI E + + F
Sbjct: 62 YGNGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGD 105
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat
(Rattus norvegicus), isozyme 2 [TaxId: 10116]}
Length = 190
Score = 36.2 bits (83), Expect = 0.004
Identities = 10/57 (17%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 29 NALKELLEN-SLDAKSTSIQVTVKQGGLKL-LQIQDNGTGIRKEDMDIVCERFTTSK 83
NA++ +E+ I++ V G L +++ D G G+ ++ + ++
Sbjct: 71 NAMRATVESHESSLTLPPIKIMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTA 127
Score = 32.4 bits (73), Expect = 0.071
Identities = 7/39 (17%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 316 IQVTVKQGGLKL-LQIQDNGTGIRKEDMDIVCERFTTSK 353
I++ V G L +++ D G G+ ++ + ++
Sbjct: 89 IKIMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTA 127
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 148
Score = 34.5 bits (79), Expect = 0.011
Identities = 13/61 (21%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 30 ALKELLENSLDA-KSTSIQVTVKQGGLKL-LQIQDNGTGIRKEDMDIVCERFTTSKLTQF 87
A+ + N++ +T +Q++ + + I DNG+G+ + + +V ERF+
Sbjct: 48 AVDNAIANAVKHGGATLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASH 107
Query: 88 E 88
Sbjct: 108 S 108
Score = 31.0 bits (70), Expect = 0.16
Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 308 VFYTQSTSIQVTVKQGGLKL-LQIQDNGTGIRKEDMDIVCERFTTSKLTQFE 358
V + +T +Q++ + + I DNG+G+ + + +V ERF+
Sbjct: 57 VKHGGATLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHS 108
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853
{Thermotoga maritima [TaxId: 2336]}
Length = 161
Score = 32.6 bits (74), Expect = 0.048
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 6/60 (10%)
Query: 30 ALKELLENSLDA------KSTSIQVTVKQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSK 83
L LL N + + ++ G L+ ++DNG GI D + E+F
Sbjct: 53 VLLNLLNNGVKYSKKDAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVD 112
Score = 30.6 bits (69), Expect = 0.23
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 321 KQGGLKLLQIQDNGTGIRKEDMDIVCERFTTSK 353
++ G L+ ++DNG GI D + E+F
Sbjct: 80 EKDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVD 112
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia
coli [TaxId: 562]}
Length = 146
Score = 32.1 bits (73), Expect = 0.059
Identities = 9/55 (16%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 30 ALKELLENSLDAKSTSIQVTVKQGGLKL-LQIQDNGTGIRKEDMDIVCERFTTSK 83
+ +L+N+ ++++ +Q L + ++D+G GI +++ +R
Sbjct: 48 VMGNVLDNACKYCLEFVEISARQTDEHLYIVVEDDGPGIPLSKREVIFDRGQRVD 102
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid
dehydrogenase kinase (BCK) {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 193
Score = 31.0 bits (69), Expect = 0.23
Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 11/94 (11%)
Query: 31 LKELLENSLDA----------KSTSIQVTVKQGGLKL-LQIQDNGTGIRKEDMDIVCERF 79
L ELL+N++ A + +T+ + L ++I D G GI +D+D V +
Sbjct: 58 LPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYH 117
Query: 80 TTSKLTQFEDLNSISTFGFRGEALASISHVAHLT 113
T+ +D FG S H
Sbjct: 118 FTTAEASTQDPRISPLFGHLDMHSGGQSGPMHGF 151
Score = 29.1 bits (64), Expect = 0.98
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 315 SIQVTVKQGGLKL-LQIQDNGTGIRKEDMDIVCERFTTSKLTQFEDLNSISTFGFRGEAL 373
+ +T+ + L ++I D G GI +D+D V + T+ +D FG
Sbjct: 82 DVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHS 141
Query: 374 ASISHVAHLT 383
S H
Sbjct: 142 GGQSGPMHGF 151
>d2j3wb1 d.278.1.2 (B:21-188) TRAPPC5, similar to trafficking
protein particle complex 5 {Zebrafish (Brachydanio
rerio) [TaxId: 7955]}
Length = 168
Score = 27.5 bits (61), Expect = 2.4
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 134 LMALALMEMSQYLQRDKEQIGDKEEK 159
AL EM QY Q + + + +
Sbjct: 8 AFALLFSEMVQYCQSRVYSVSELQAR 33
>d1ugja_ b.41.1.3 (A:) RIKEN cDNA 2310057j16 protein (KIAA1543)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 141
Score = 26.6 bits (59), Expect = 4.1
Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 5/86 (5%)
Query: 369 RGEALASISHVAHLTIITKTKTSPCAYRASYIDSKLKDPIKPCAGNQGTQIIAE---DLF 425
+ L I + + S C +RA Y S + + AG G + + +
Sbjct: 41 KNRILEEIEKSKANHFLILFRDSSCQFRALYTLSGETEELSRLAGY-GPRTVTPAMVEGI 99
Query: 426 YNIPTRRKALKQ-PSEEYNKIADVVS 450
Y + RK Q P++ + D +
Sbjct: 100 YKYNSDRKRFTQIPAKTMSMSVDAFT 125
>d2g5ca1 a.100.1.12 (A:201-310) Prephenate dehydrogenase TyrA
{Aquifex aeolicus [TaxId: 63363]}
Length = 110
Score = 25.8 bits (56), Expect = 7.3
Identities = 6/51 (11%), Positives = 12/51 (23%)
Query: 101 EALASISHVAHLTIITKTKTSPCAYRWCTYLADLMALALMEMSQYLQRDKE 151
+SH+ H T L + ++ + D
Sbjct: 7 YVFGVVSHLPHAVAFALVDTLIHMSTPEVDLFKYPGGGFKDFTRIAKSDPI 57
>d1t62a_ b.122.1.4 (A:) Hypothetical protein EF3133 {Enterococcus
faecalis [TaxId: 1351]}
Length = 166
Score = 25.9 bits (57), Expect = 7.4
Identities = 5/10 (50%), Positives = 7/10 (70%)
Query: 70 EDMDIVCERF 79
DM +VC+ F
Sbjct: 137 PDMLLVCQSF 146
Score = 25.9 bits (57), Expect = 7.4
Identities = 5/10 (50%), Positives = 7/10 (70%)
Query: 340 EDMDIVCERF 349
DM +VC+ F
Sbjct: 137 PDMLLVCQSF 146
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 125
Score = 25.7 bits (55), Expect = 8.4
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 11/55 (20%)
Query: 30 ALKELLENSLDAKST----------SIQVTVKQGGLKL-LQIQDNGTGIRKEDMD 73
L EL +NS+ A +++ V G L ++I D G G+ +D
Sbjct: 68 MLFELFKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKID 122
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.372
Gapped
Lambda K H
0.267 0.0550 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,784,364
Number of extensions: 80048
Number of successful extensions: 217
Number of sequences better than 10.0: 1
Number of HSP's gapped: 212
Number of HSP's successfully gapped: 33
Length of query: 512
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 423
Effective length of database: 1,185,626
Effective search space: 501519798
Effective search space used: 501519798
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.4 bits)