BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1957
(149 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P40692|MLH1_HUMAN DNA mismatch repair protein Mlh1 OS=Homo sapiens GN=MLH1 PE=1 SV=1
Length = 756
Score = 143 bits (360), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 95/146 (65%)
Query: 4 RREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLE 63
RR I L+SV L+ EI +Q L E+ SFVGC P L QH+TKLY++N T + E
Sbjct: 498 RRIINLTSVLSLQEEINEQGHEVLREMLHNHSFVGCVNPQWALAQHQTKLYLLNTTKLSE 557
Query: 64 ELFYQLMLHDFGNFGVFRFENPVSIKELLLISLDLPDSGWDPSNGSKSEVAESASQFLLS 123
ELFYQ++++DF NFGV R P + +L +++LD P+SGW +G K +AE +FL
Sbjct: 558 ELFYQILIYDFANFGVLRLSEPAPLFDLAMLALDSPESGWTEEDGPKEGLAEYIVEFLKK 617
Query: 124 RADMLTDYFSMEIDTQARLRTLPLLV 149
+A+ML DYFS+EID + L LPLL+
Sbjct: 618 KAEMLADYFSLEIDEEGNLIGLPLLI 643
>sp|Q9JK91|MLH1_MOUSE DNA mismatch repair protein Mlh1 OS=Mus musculus GN=Mlh1 PE=2 SV=2
Length = 760
Score = 142 bits (358), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 96/146 (65%)
Query: 4 RREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLE 63
RR I L+SV L+ EI ++ L E+ R SFVGC P L QH+TKLY++N T + E
Sbjct: 502 RRIINLTSVLSLQEEISERCHETLREMLRNHSFVGCVNPQWALAQHQTKLYLLNTTKLSE 561
Query: 64 ELFYQLMLHDFGNFGVFRFENPVSIKELLLISLDLPDSGWDPSNGSKSEVAESASQFLLS 123
ELFYQ++++DF NFGV R P + +L +++LD P+SGW +G K +AE +FL
Sbjct: 562 ELFYQILIYDFANFGVLRLSEPAPLFDLAMLALDSPESGWTEDDGPKEGLAEYIVEFLKK 621
Query: 124 RADMLTDYFSMEIDTQARLRTLPLLV 149
+A+ML DYFS+EID + L LPLL+
Sbjct: 622 KAEMLADYFSVEIDEEGNLIGLPLLI 647
>sp|P97679|MLH1_RAT DNA mismatch repair protein Mlh1 OS=Rattus norvegicus GN=Mlh1 PE=2
SV=1
Length = 757
Score = 139 bits (351), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 67/146 (45%), Positives = 93/146 (63%)
Query: 4 RREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLE 63
RR I L+SV L+ EI + L E+ R +FVGC P L QH+TKLY++N T + E
Sbjct: 500 RRIINLTSVLSLQEEINDRGHETLREMLRNHTFVGCVNPQWALAQHQTKLYLLNTTKLSE 559
Query: 64 ELFYQLMLHDFGNFGVFRFENPVSIKELLLISLDLPDSGWDPSNGSKSEVAESASQFLLS 123
ELFYQ++++DF NFGV R P + + +++LD P+SGW +G K +AE +FL
Sbjct: 560 ELFYQILIYDFANFGVLRLPEPAPLFDFAMLALDSPESGWTEEDGPKEGLAEYIVEFLKK 619
Query: 124 RADMLTDYFSMEIDTQARLRTLPLLV 149
+A ML DYFS+EID + L LPLL+
Sbjct: 620 KAKMLADYFSVEIDEEGNLIGLPLLI 645
>sp|Q54KD8|MLH1_DICDI DNA mismatch repair protein Mlh1 OS=Dictyostelium discoideum
GN=mlh1 PE=3 SV=1
Length = 884
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 85/142 (59%)
Query: 5 REIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLEE 64
++++L+S++ L E + L E F FVGC L+Q KLY++N+ + +E
Sbjct: 619 KQVELTSIKTLISEFQSNVHDGLKEFFNDCVFVGCLDHSYALVQFGKKLYLINLENITKE 678
Query: 65 LFYQLMLHDFGNFGVFRFENPVSIKELLLISLDLPDSGWDPSNGSKSEVAESASQFLLSR 124
LFYQL L F +F +F +SI LLL+SLD P SGW S+G K ++A+ ++ L+S+
Sbjct: 679 LFYQLSLLRFSDFDSIKFSQSLSIYSLLLVSLDSPLSGWMESDGPKDKIADYLTKLLISK 738
Query: 125 ADMLTDYFSMEIDTQARLRTLP 146
++L +YFS+EI+ L +P
Sbjct: 739 KELLNEYFSIEINEDGELVGIP 760
>sp|Q9P7W6|MLH1_SCHPO Putative MutL protein homolog 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mlh1 PE=2 SV=1
Length = 684
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 75/146 (51%), Gaps = 16/146 (10%)
Query: 7 IKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVG--CATPCMCLIQHETKLYIVNVTYVLEE 64
I L S++ L+ ++ + + +VG C T + +QH LY+V+ +
Sbjct: 446 IDLESIKSLQKQVINSMHVLATNILTEHKYVGLVCPTRRIAAVQHNIGLYVVDYGKLSYH 505
Query: 65 LFYQLMLHDFGNFGVFRFENPVSIKELLLISLDLPDSGWDPSNG--SKSEVAESASQFLL 122
LFYQ+ L +FGN+G F E P+SI +L I NG KSE +E ++ L+
Sbjct: 506 LFYQICLTEFGNYGEFVLETPLSISDLFEI-----------VNGDEDKSE-SEKFTRLLV 553
Query: 123 SRADMLTDYFSMEIDTQARLRTLPLL 148
SR DML DYFS+ + + L +P+L
Sbjct: 554 SRRDMLKDYFSISVTSGGLLTAVPML 579
>sp|P38920|MLH1_YEAST DNA mismatch repair protein MLH1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MLH1 PE=1 SV=2
Length = 769
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 4 RREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATP--CMCLIQHETKLYIVNVTYV 61
R + L+S++ LR +++ +L ++F L++VG + IQH+ KL++++ V
Sbjct: 506 RVNVNLTSIKKLREKVDDSIHRELTDIFANLNYVGVVDEERRLAAIQHDLKLFLIDYGSV 565
Query: 62 LEELFYQLMLHDFGNFGVFRFENPVSIKELLLISLDLPDSGWDPSNGSKSEVAESASQFL 121
ELFYQ+ L DF NFG ++ +++L +L S +D N S+ E +
Sbjct: 566 CYELFYQIGLTDFANFGKINLQSTNVSDDIVLYNL---LSEFDELNDDASK--EKIISKI 620
Query: 122 LSRADMLTDYFSMEI 136
+ ML +Y+S+E+
Sbjct: 621 WDMSSMLNEYYSIEL 635
>sp|Q9Y4D8|HECD4_HUMAN Probable E3 ubiquitin-protein ligase HECTD4 OS=Homo sapiens GN=HECTD4
PE=1 SV=5
Length = 3996
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Query: 6 EIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLEEL 65
EI L + + GEI ++S C+ R+L+ V + C+ L Y N+ + EE+
Sbjct: 3585 EITLDPLEIVGGEIRASENSYFCQAARQLASVPSSQLCVKLASGGDPTYAFNIRFTGEEV 3644
Query: 66 FYQLMLHDFGNFGVFR 81
G G FR
Sbjct: 3645 --------HGTSGSFR 3652
>sp|O75417|DPOLQ_HUMAN DNA polymerase theta OS=Homo sapiens GN=POLQ PE=1 SV=2
Length = 2590
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 12/122 (9%)
Query: 25 SQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTY-VLEELFYQLMLHDFGNFGVFRFE 83
SQ C +L+ +G +T C E++ +I+ +E YQL H F F
Sbjct: 2080 SQYCLALLELNGIGFST-AEC----ESQKHIMQAKLDAIETQAYQLAGHSFS------FT 2128
Query: 84 NPVSIKELLLISLDLPDSGWDPSNGSKSEVAESASQFLLSRADMLTDYFSMEIDTQARLR 143
+ I E+L + L LP + + GSK + + R L FS D +L+
Sbjct: 2129 SSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLK 2188
Query: 144 TL 145
L
Sbjct: 2189 AL 2190
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,784,786
Number of Sequences: 539616
Number of extensions: 1657416
Number of successful extensions: 3374
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3365
Number of HSP's gapped (non-prelim): 8
length of query: 149
length of database: 191,569,459
effective HSP length: 107
effective length of query: 42
effective length of database: 133,830,547
effective search space: 5620882974
effective search space used: 5620882974
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)