Query psy1957
Match_columns 149
No_of_seqs 106 out of 220
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 20:36:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1957.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1957hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1979|consensus 100.0 7.5E-48 1.6E-52 340.0 13.0 146 4-149 442-588 (694)
2 PF08676 MutL_C: MutL C termin 97.4 0.0013 2.7E-08 48.8 8.6 92 35-149 4-99 (144)
3 COG0323 MutL DNA mismatch repa 97.2 0.0014 3E-08 60.5 8.3 50 29-78 447-496 (638)
4 smart00853 MutL_C MutL C termi 97.2 0.0033 7.1E-08 45.9 8.2 91 34-148 2-99 (136)
5 PRK00095 mutL DNA mismatch rep 96.3 0.021 4.5E-07 52.5 8.2 93 32-148 429-527 (617)
6 PF03068 PAD: Protein-arginine 37.3 1E+02 0.0022 27.3 5.9 103 30-148 184-292 (385)
7 PF11197 DUF2835: Protein of u 36.9 26 0.00056 23.4 1.7 18 128-145 49-66 (68)
8 PF04351 PilP: Pilus assembly 31.2 50 0.0011 24.8 2.7 29 31-59 76-108 (149)
9 PF15368 BioT2: Spermatogenesi 27.6 1.1E+02 0.0024 23.9 4.0 63 76-140 47-109 (170)
10 PF14998 Ripply: Transcription 26.5 56 0.0012 23.0 2.1 33 44-78 37-69 (87)
11 PF05258 DUF721: Protein of un 21.8 2.3E+02 0.005 18.2 4.6 34 28-69 34-68 (89)
12 PF00797 Acetyltransf_2: N-ace 21.6 40 0.00087 26.6 0.7 15 125-139 224-238 (240)
13 PF13259 DUF4050: Protein of u 20.5 65 0.0014 23.5 1.6 42 57-107 78-119 (122)
14 PF07606 DUF1569: Protein of u 20.4 71 0.0015 24.1 1.8 21 1-21 1-21 (152)
No 1
>KOG1979|consensus
Probab=100.00 E-value=7.5e-48 Score=339.95 Aligned_cols=146 Identities=42% Similarity=0.766 Sum_probs=143.0
Q ss_pred eee-eeechHHHHHHHHHHhcChhHHHHhhcCeEEEEecCCeeEEEecCceEeEehHHHHHHHHHHHHHhhcCCCCeecc
Q psy1957 4 RRE-IKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFGNFGVFRF 82 (149)
Q Consensus 4 ~~~-~~L~Sv~~Lr~ev~~~~~~~L~~i~~~~~fVG~vd~~~~LiQ~~t~LyLvn~~~l~~ElfYQ~~L~~Fgnf~~i~l 82 (149)
+|+ ++|+||++||++|.+++|..||++|+||+||||||+.++||||+|+||+||+..+++|+|||+.|++|||||.+++
T Consensus 442 ~rE~~~L~Si~~Lr~eV~~~~h~~l~e~~~n~~yVG~vd~~~alvQh~t~Ly~~d~~~ls~ElfYQi~i~dF~Nfg~~~l 521 (694)
T KOG1979|consen 442 PRERFRLESIKKLRKEVIDSCHVVLTEMFRNLSYVGVVDERTALVQHGTSLYLCDTVSLSKELFYQILITDFGNFGKIRL 521 (694)
T ss_pred chhccchhhHHHHHHHHHhhccHHHHHHHHhcceeeeechhhhhhhcCceEEEechHHHHHHHHHHHHHHHhcccceeec
Confidence 344 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHhHHHhhhccceEEEccCCeeeeccccC
Q psy1957 83 ENPVSIKELLLISLDLPDSGWDPSNGSKSEVAESASQFLLSRADMLTDYFSMEIDTQARLRTLPLLV 149 (149)
Q Consensus 83 ~~p~~l~~Ll~~al~~~~~~~~~~d~~~~~la~~~~~~L~~~~eML~eYFsi~I~~~g~L~slP~ll 149 (149)
++|+|+.||+++++++++.||+++|+.|+.+|+.+++.|.+||+||.|||||+||++|.|.+||+|+
T Consensus 522 ~~p~~l~el~~l~l~~e~~~~~~~d~~ke~~~~~~~e~l~~ka~ml~dYFsi~i~e~g~l~~lP~L~ 588 (694)
T KOG1979|consen 522 SEPLPLSELLMLALESEEPGWTADDGFKEKIARFAAEKLLEKADMLHDYFSIEIDEEGLLTGLPSLL 588 (694)
T ss_pred CCCccHHHHHHHhccCccCCCCccchhHHHHHHHHHHHHhhhHHHHhhheEEEEccCCceecCchhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999985
No 2
>PF08676 MutL_C: MutL C terminal dimerisation domain; InterPro: IPR014790 MutL and MutS are key components of the DNA repair machinery that corrects replication errors []. MutS recognises mispaired or unpaired bases in a DNA duplex and in the presence of ATP, recruits MutL to form a DNA signalling complex for repair. The N-terminal region of MutL contains the ATPase domain and the C-terminal is involved in dimerisation []. ; GO: 0005524 ATP binding, 0006298 mismatch repair; PDB: 3NCV_B 1X9Z_B 3GAB_C 3KDK_A 3KDG_A.
Probab=97.42 E-value=0.0013 Score=48.78 Aligned_cols=92 Identities=17% Similarity=0.325 Sum_probs=67.5
Q ss_pred eEEEEecCCeeEEEecCceEeEehHHHHHHHHHHHHHhhcCCC-CeecccCCCCHHHHHHHhhcCCCCCCCCCCCChhHH
Q psy1957 35 SFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFGNF-GVFRFENPVSIKELLLISLDLPDSGWDPSNGSKSEV 113 (149)
Q Consensus 35 ~fVG~vd~~~~LiQ~~t~LyLvn~~~l~~ElfYQ~~L~~Fgnf-~~i~l~~p~~l~~Ll~~al~~~~~~~~~~d~~~~~l 113 (149)
.++|.++.++.++|.+..||++|-.+.-+-.-|.....++.+- ..-.|-.|+.+ + +
T Consensus 4 ~vlgq~~~~yil~~~~~~L~liDqHAAhERi~~E~l~~~~~~~~~~q~Ll~P~~~-~----------------------l 60 (144)
T PF08676_consen 4 KVLGQLDNKYILAESEDGLYLIDQHAAHERILYEKLLKQLEEGEQSQPLLFPIEL-E----------------------L 60 (144)
T ss_dssp EEEEEETTTEEEEEETTEEEEEEHHHHHHHHHHHHHHHHCCHCS-EEEEEEEEEE-E-----------------------
T ss_pred eeHhHhCCEEEEEEeCCCEEEEEHHHHHHHHHHHHHHHhhccCCCceecCCCccC-C----------------------C
Confidence 5899999999999999999999999999999999999998764 55555556543 1 1
Q ss_pred HHHHHHHHHhHHHhhhcc-ceEEEccCC--eeeeccccC
Q psy1957 114 AESASQFLLSRADMLTDY-FSMEIDTQA--RLRTLPLLV 149 (149)
Q Consensus 114 a~~~~~~L~~~~eML~eY-Fsi~I~~~g--~L~slP~ll 149 (149)
...-.+.+.++.+.|++. |.++.-.++ .+.++|.++
T Consensus 61 s~~e~~~l~~~~~~L~~~Gf~~~~~~~~~~~v~~vP~~l 99 (144)
T PF08676_consen 61 SPQEAELLEENKEELEKLGFEIEEFGENSIIVRSVPAIL 99 (144)
T ss_dssp -HHHHHHHHHHHHHHHHTT-EEEEESTTEEEEEEEECCC
T ss_pred CHHHHHHHHHHHHHHHhCCeEEEEecCCEEEEEEeCccc
Confidence 123346788888888875 555521233 389999764
No 3
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=97.23 E-value=0.0014 Score=60.46 Aligned_cols=50 Identities=26% Similarity=0.442 Sum_probs=47.8
Q ss_pred HHhhcCeEEEEecCCeeEEEecCceEeEehHHHHHHHHHHHHHhhcCCCC
Q psy1957 29 EVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFGNFG 78 (149)
Q Consensus 29 ~i~~~~~fVG~vd~~~~LiQ~~t~LyLvn~~~l~~ElfYQ~~L~~Fgnf~ 78 (149)
+.+....++|.++..+.|+||+..||+||..+..+.++|+.+...+|+.|
T Consensus 447 ~~~~~~~~i~q~~~~yil~e~~~~L~lvDqhaa~Eri~ye~l~~~~~~~~ 496 (638)
T COG0323 447 DVFPLGEAIGQVHGTYILAEHEDGLVLVDQHAAHERILYEKLKNELGNVG 496 (638)
T ss_pred cccccceEEEEecceEEEEEeCCCEEEEEhHHhHHHHHHHHHHHHhcccc
Confidence 56778899999999999999999999999999999999999999999997
No 4
>smart00853 MutL_C MutL C terminal dimerisation domain. MutL and MutS are key components of the DNA repair machinery that corrects replication errors. MutS recognises mispaired or unpaired bases in a DNA duplex and in the presence of ATP, recruits MutL to form a DNA signaling complex for repair. The N terminal region of MutL contains the ATPase domain and the C terminal is involved in dimerisation.
Probab=97.16 E-value=0.0033 Score=45.87 Aligned_cols=91 Identities=18% Similarity=0.242 Sum_probs=62.4
Q ss_pred CeEEEEecCCeeEEEecCceEeEehHHHHHHHHHHHHHhhcCCCC---eecccCCCCHHHHHHHhhcCCCCCCCCCCCCh
Q psy1957 34 LSFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFGNFG---VFRFENPVSIKELLLISLDLPDSGWDPSNGSK 110 (149)
Q Consensus 34 ~~fVG~vd~~~~LiQ~~t~LyLvn~~~l~~ElfYQ~~L~~Fgnf~---~i~l~~p~~l~~Ll~~al~~~~~~~~~~d~~~ 110 (149)
..++|.++.++.++|.+..||++|-.+.-+-..|......+.+-+ .-.|-.|+.+ +-++
T Consensus 2 ~~~l~qv~~~yil~~~~~~l~liDqhaA~ERi~~e~l~~~~~~~~~~~~Q~Ll~P~~i------------------~l~~ 63 (136)
T smart00853 2 GRVLGQVHGTYILAESEDGLVLIDQHAAHERILYEQLKAKLQAGLLEKSQPLLIPVIL------------------ELSP 63 (136)
T ss_pred ccEEEEEcCEEEEEEcCCCEEEEEhHHHHHHHHHHHHHHHHhcCCCccccccCCCEEE------------------EcCH
Confidence 468999999999999999999999999999999998888763321 2233334332 0111
Q ss_pred hHHHHHHHHHHHhHHHhhhccceEEEccCC----eeeecccc
Q psy1957 111 SEVAESASQFLLSRADMLTDYFSMEIDTQA----RLRTLPLL 148 (149)
Q Consensus 111 ~~la~~~~~~L~~~~eML~eYFsi~I~~~g----~L~slP~l 148 (149)
.-...+.++.+.|+. +|++++..| .+.++|.+
T Consensus 64 -----~e~~~l~~~~~~l~~-~Gf~~~~~~~~~~~i~~vP~~ 99 (136)
T smart00853 64 -----EEAALLEEHQELLAR-LGFELEIFGGQSVILRSVPAL 99 (136)
T ss_pred -----HHHHHHHHHHHHHHH-cCeEEEccCCCEEEEEeECcc
Confidence 122455566666655 777776433 38999974
No 5
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=96.25 E-value=0.021 Score=52.47 Aligned_cols=93 Identities=18% Similarity=0.296 Sum_probs=66.8
Q ss_pred hcCeEEEEecCCeeEEEecCceEeEehHHHHHHHHHHHHHhhcCC--CCeecccCCCCHHHHHHHhhcCCCCCCCCCCCC
Q psy1957 32 RKLSFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFGN--FGVFRFENPVSIKELLLISLDLPDSGWDPSNGS 109 (149)
Q Consensus 32 ~~~~fVG~vd~~~~LiQ~~t~LyLvn~~~l~~ElfYQ~~L~~Fgn--f~~i~l~~p~~l~~Ll~~al~~~~~~~~~~d~~ 109 (149)
....+||.++.++.++|++..||++|-.+.-+-..|......+++ ...-.|-.|+.+. .+
T Consensus 429 ~~~~vigQv~~~YIl~e~~~~L~iIDQHAAhERI~yE~l~~~~~~~~~~~Q~LL~P~~l~------------------Ls 490 (617)
T PRK00095 429 PLGYALGQLHGTYILAENEDGLYLVDQHAAHERLLYEQLKDKLAEVGLASQPLLIPLVLE------------------LS 490 (617)
T ss_pred cCceEeEEEcCEEEEEEeCCcEEEEEHHHHHHHHHHHHHHHHhccCCCcccccccCeEEe------------------eC
Confidence 335689999999999999999999999999999999999998865 3444555555431 01
Q ss_pred hhHHHHHHHHHHHhHHHhhhccceEEEccCC----eeeecccc
Q psy1957 110 KSEVAESASQFLLSRADMLTDYFSMEIDTQA----RLRTLPLL 148 (149)
Q Consensus 110 ~~~la~~~~~~L~~~~eML~eYFsi~I~~~g----~L~slP~l 148 (149)
+ .-...+.++.+-|.+ +|++|+.-| .|.++|.+
T Consensus 491 ~-----~e~~~l~~~~~~L~~-lGf~~e~fg~~si~I~~vP~~ 527 (617)
T PRK00095 491 E-----DEADRLEEHKELLAR-LGLELEPFGPNSFAVREVPAL 527 (617)
T ss_pred H-----HHHHHHHHHHHHHHh-CCcEEEEcCCCEEEEEecChh
Confidence 1 222456666665555 777776422 38999974
No 6
>PF03068 PAD: Protein-arginine deiminase (PAD); InterPro: IPR013530 In the presence of calcium ions, Protein-arginine deiminase (PAD) enzymes 3.5.3.15 from EC catalyse the post-translational modification reaction responsible for the formation of citrulline residues from protein-bound arginine residues []. Four PAD isotypes of PAD have been identified in mammals, a fifth may also exist. Non-mammalian vertebrates appear to have only a single PAD enzyme. All known natural substrates of PAD are proteins known to have an important structural function, such as keratin (PAD1), intermediate filaments or proteins associated with intermediate filaments. Citrulination may have consequences for the structural integrity and interactions of these proteins. Physiological levels of calcium appear to be too low to activate these enzymes suggesting a role between PAD activation and loss of calcium homeostasis during terminal differentiation and cell death (apoptosis). ; GO: 0004668 protein-arginine deiminase activity, 0005509 calcium ion binding, 0005737 cytoplasm; PDB: 3B1U_A 3B1T_A 2DW5_A 3APN_A 1WD9_A 2DEX_X 1WD8_A 2DEY_X 2DEW_X 1WDA_A ....
Probab=37.33 E-value=1e+02 Score=27.31 Aligned_cols=103 Identities=14% Similarity=0.155 Sum_probs=62.0
Q ss_pred HhhcCeEEEEecCCeeEEEecCce---EeEehHHHHHHHHHHHHHhhcCCCCee---cccCCCCHHHHHHHhhcCCCCCC
Q psy1957 30 VFRKLSFVGCATPCMCLIQHETKL---YIVNVTYVLEELFYQLMLHDFGNFGVF---RFENPVSIKELLLISLDLPDSGW 103 (149)
Q Consensus 30 i~~~~~fVG~vd~~~~LiQ~~t~L---yLvn~~~l~~ElfYQ~~L~~Fgnf~~i---~l~~p~~l~~Ll~~al~~~~~~~ 103 (149)
+...--+||-||+=.+.+=..++. .|+.-...+.++|-|.--.+.|+--.+ .-....+|.+++.-.-
T Consensus 184 Lds~WL~VGHVDEFm~FvPa~~~kGfrlllasP~a~l~Ll~~~q~~GhG~~~~f~g~~~~~~~TI~~iL~~~~------- 256 (385)
T PF03068_consen 184 LDSDWLAVGHVDEFMQFVPANDKKGFRLLLASPRACLKLLREAQKEGHGDATLFSGLSGPSSPTIDQILSDKS------- 256 (385)
T ss_dssp EE-TTBSS--GGGTEEEEE-SSTTSEEEEEEEHHHHHHHHHHHHHTTTTT-EETTT-TTS--EEHHHHHH-HH-------
T ss_pred ecccccccCCcchheEEeecCCCCceEEEecCHHHHHHHHHHHHhCCCCceecccCCCccCCCCHHHHhcchh-------
Confidence 555667899999876666555543 566667789999999988888874322 2222225666664210
Q ss_pred CCCCCChhHHHHHHHHHHHhHHHhhhccceEEEccCCeeeecccc
Q psy1957 104 DPSNGSKSEVAESASQFLLSRADMLTDYFSMEIDTQARLRTLPLL 148 (149)
Q Consensus 104 ~~~d~~~~~la~~~~~~L~~~~eML~eYFsi~I~~~g~L~slP~l 148 (149)
-.+--+++.+.+.-+++.|+.=.++. +..++.+|.|
T Consensus 257 ------l~~~n~~~~~~Id~N~~iLKrElGLt---e~dIi~IP~L 292 (385)
T PF03068_consen 257 ------LRQQNEYAQRCIDWNREILKRELGLT---EEDIIDIPAL 292 (385)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHT-----GGGEEEEE--
T ss_pred ------hHHhHHHHHhhhHHHHHHHHHhcCCC---HHHceecChh
Confidence 01112467788889999999988887 3458889976
No 7
>PF11197 DUF2835: Protein of unknown function (DUF2835); InterPro: IPR021363 This is a bacterial family of uncharacterised proteins. One member of this family (A4VM42 from SWISSPROT) is annotated as the A subunit of Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV).
Probab=36.85 E-value=26 Score=23.42 Aligned_cols=18 Identities=22% Similarity=0.506 Sum_probs=15.6
Q ss_pred hhccceEEEccCCeeeec
Q psy1957 128 LTDYFSMEIDTQARLRTL 145 (149)
Q Consensus 128 L~eYFsi~I~~~g~L~sl 145 (149)
..=+|.+.+|++|++++|
T Consensus 49 v~G~F~l~~d~~~kf~sl 66 (68)
T PF11197_consen 49 VHGRFRLEFDDNNKFVSL 66 (68)
T ss_pred ceEEEEEEECCCCCEEEe
Confidence 466899999999999886
No 8
>PF04351 PilP: Pilus assembly protein, PilP; InterPro: IPR007446 The PilP family are periplasmic proteins involved in the biogenesis of type IV pili [].; PDB: 2Y4Y_B 2Y4X_A 2IVW_A 2LC4_A.
Probab=31.17 E-value=50 Score=24.81 Aligned_cols=29 Identities=31% Similarity=0.519 Sum_probs=24.9
Q ss_pred hhcCeEEEEecCC---eeEEEe-cCceEeEehH
Q psy1957 31 FRKLSFVGCATPC---MCLIQH-ETKLYIVNVT 59 (149)
Q Consensus 31 ~~~~~fVG~vd~~---~~LiQ~-~t~LyLvn~~ 59 (149)
|.+..+||.+... ++|||- +.++|.|..+
T Consensus 76 Ld~LklvG~l~~~~~~~ALv~~pdg~v~~V~~G 108 (149)
T PF04351_consen 76 LDQLKLVGTLSQGGQPWALVQDPDGKVYRVKVG 108 (149)
T ss_dssp CCCEEEEEEEEETTEEEEEEEE-TTEEEEEETT
T ss_pred hhHeEEEEEEeeCCEEEEEEEeCCCCEEEecCC
Confidence 6778999999854 999999 9999998765
No 9
>PF15368 BioT2: Spermatogenesis family BioT2
Probab=27.56 E-value=1.1e+02 Score=23.91 Aligned_cols=63 Identities=14% Similarity=0.255 Sum_probs=45.4
Q ss_pred CCCeecccCCCCHHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHhHHHhhhccceEEEccCC
Q psy1957 76 NFGVFRFENPVSIKELLLISLDLPDSGWDPSNGSKSEVAESASQFLLSRADMLTDYFSMEIDTQA 140 (149)
Q Consensus 76 nf~~i~l~~p~~l~~Ll~~al~~~~~~~~~~d~~~~~la~~~~~~L~~~~eML~eYFsi~I~~~g 140 (149)
....+.|.+|+.=..++..|+--+.+. +.+-.+.+++..+|+.-|..-..=|+|-|+..++ +|
T Consensus 47 kiEpMVLrsPPTgESivryALPIPssk-tkell~~de~irkitkhLkmvVstLEeTyG~~~~-~g 109 (170)
T PF15368_consen 47 KIEPMVLRSPPTGESIVRYALPIPSSK-TKELLSEDEMIRKITKHLKMVVSTLEETYGLDIQ-NG 109 (170)
T ss_pred ccccccccCCCCchhHHHhhcCCCchh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcccc-cc
Confidence 355677888888888899998766432 2333445677778888887777779999999974 44
No 10
>PF14998 Ripply: Transcription Regulator
Probab=26.52 E-value=56 Score=22.98 Aligned_cols=33 Identities=21% Similarity=0.232 Sum_probs=25.5
Q ss_pred eeEEEecCceEeEehHHHHHHHHHHHHHhhcCCCC
Q psy1957 44 MCLIQHETKLYIVNVTYVLEELFYQLMLHDFGNFG 78 (149)
Q Consensus 44 ~~LiQ~~t~LyLvn~~~l~~ElfYQ~~L~~Fgnf~ 78 (149)
..-.||=++||+ ...=+.+++||.+=.=..||+
T Consensus 37 ~~~FqHPVRL~w--PkSk~~dYLy~~gE~lL~nFP 69 (87)
T PF14998_consen 37 LSGFQHPVRLYW--PKSKCYDYLYSEGEKLLANFP 69 (87)
T ss_pred ccccCCceEeec--cchHHHHHHHHHHHHHHHcCC
Confidence 556999999999 667799999998744444554
No 11
>PF05258 DUF721: Protein of unknown function (DUF721); InterPro: IPR007922 This family contains several actinomycete proteins of unknown function, and related sequences from other species.
Probab=21.77 E-value=2.3e+02 Score=18.15 Aligned_cols=34 Identities=18% Similarity=0.088 Sum_probs=25.5
Q ss_pred HHHhhcCeEEEEecCCeeEEEecCceEe-EehHHHHHHHHHHH
Q psy1957 28 CEVFRKLSFVGCATPCMCLIQHETKLYI-VNVTYVLEELFYQL 69 (149)
Q Consensus 28 ~~i~~~~~fVG~vd~~~~LiQ~~t~LyL-vn~~~l~~ElfYQ~ 69 (149)
-.-+.+|+.+..++ +..|++ |+.+....++-|+.
T Consensus 34 g~~l~~~~~~~~i~--------~g~L~i~v~~~~~~~~L~~~~ 68 (89)
T PF05258_consen 34 GPELAQHTRPVSIK--------DGTLVIEVDSSAWAQELRYMK 68 (89)
T ss_pred CHHHHccEEEEEEE--------CCEEEEEECCHHHHHHHHHHH
Confidence 34567788877776 446777 99999999998875
No 12
>PF00797 Acetyltransf_2: N-acetyltransferase; InterPro: IPR001447 Arylamine N-acetyltransferase (NAT) is a cytosolic enzyme of approximately 30 kDa. It facilitates the transfer of an acetyl group from acetyl coenzyme A on to a wide range of arylamine, N-hydroxyarylamines and hydrazines. Acetylation of these compounds generally results in inactivation. NAT is found in many species from Mycobacteria (Mycobacterium tuberculosis, Mycobacterium smegmatis etc) to Homo sapiens (Human). It was the first enzyme to be observed to have polymorphic activity amongst human individuals. NAT is responsible for the inactivation of Isoniazid (a drug used to treat tuberculosis) in humans. The NAT protein has also been shown to be involved in the breakdown of folic acid. NAT catalyses the reaction: Acetyl-coA + arylamine = coA + N-acetylarylamine NAT is the target of a common genetic polymorphism of clinical relevance in humans. The N-acetylation polymorphism is determined by low or high NAT activity in liver. NAT has been implicated in the action and toxicity of amine-containing drugs, and in the susceptibility to cancer and systematic lupus erythematosus. Two highly similar human genes for NAT, termed NAT1 and NAT2, encode genetically invariant and variant NAT proteins, respectively. ; GO: 0016407 acetyltransferase activity, 0008152 metabolic process; PDB: 1W6F_A 1W5R_A 1GX3_D 2PQT_A 2IJA_A 1W4T_A 2BSZ_B 3D9W_B 3LTW_A 3LNB_A ....
Probab=21.63 E-value=40 Score=26.56 Aligned_cols=15 Identities=27% Similarity=0.895 Sum_probs=8.4
Q ss_pred HHhhhccceEEEccC
Q psy1957 125 ADMLTDYFSMEIDTQ 139 (149)
Q Consensus 125 ~eML~eYFsi~I~~~ 139 (149)
.+.|++||+|+++++
T Consensus 224 ~~iL~~~Fgi~l~~~ 238 (240)
T PF00797_consen 224 LEILKEYFGIDLDEE 238 (240)
T ss_dssp HHHHHHTS---GSS-
T ss_pred HHHHHHhCCcccCCC
Confidence 566889999988653
No 13
>PF13259 DUF4050: Protein of unknown function (DUF4050)
Probab=20.53 E-value=65 Score=23.50 Aligned_cols=42 Identities=14% Similarity=0.465 Sum_probs=30.4
Q ss_pred ehHHHHHHHHHHHHHhhcCCCCeecccCCCCHHHHHHHhhcCCCCCCCCCC
Q psy1957 57 NVTYVLEELFYQLMLHDFGNFGVFRFENPVSIKELLLISLDLPDSGWDPSN 107 (149)
Q Consensus 57 n~~~l~~ElfYQ~~L~~Fgnf~~i~l~~p~~l~~Ll~~al~~~~~~~~~~d 107 (149)
.....+.---|+.++.. .-.|..|++|.|++..-.+ ||.++.
T Consensus 78 ~Ip~~~y~~iY~~Lv~~-----~~pf~~PI~L~dmv~~Lv~----gW~~eg 119 (122)
T PF13259_consen 78 SIPPISYPAIYEKLVGS-----NKPFKQPIPLSDMVDFLVD----GWEEEG 119 (122)
T ss_pred ccchhhHHHHHHHHhcC-----CCCCCCCcCHHHHHHHHHH----HhhcCC
Confidence 45667777788888875 3346799999999987653 676543
No 14
>PF07606 DUF1569: Protein of unknown function (DUF1569); InterPro: IPR011463 This entry represents a family of hypothetical proteins identified in Rhodopirellula baltica and other bacteria.
Probab=20.35 E-value=71 Score=24.06 Aligned_cols=21 Identities=24% Similarity=0.537 Sum_probs=19.5
Q ss_pred CCceeeeeechHHHHHHHHHH
Q psy1957 1 MDLRREIKLSSVRDLRGEIEK 21 (149)
Q Consensus 1 ~~~~~~~~L~Sv~~Lr~ev~~ 21 (149)
|++||++.+++..++.++|..
T Consensus 1 ~~~~r~l~f~~l~e~~~ri~~ 21 (152)
T PF07606_consen 1 MSDRRELQFEDLDEIINRINR 21 (152)
T ss_pred CCccccCcccCHHHHHHHHHH
Confidence 889999999999999999876
Done!