Query psy1957
Match_columns 149
No_of_seqs 106 out of 220
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 20:36:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1957.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1957hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rbn_A DNA mismatch repair pro 100.0 1.1E-57 3.7E-62 376.8 14.5 147 3-149 30-176 (284)
2 3kdg_A DNA mismatch repair pro 96.7 0.0035 1.2E-07 48.3 6.2 95 31-149 6-106 (197)
3 1x9z_A DNA mismatch repair pro 96.6 0.005 1.7E-07 47.0 6.4 91 32-148 7-102 (188)
4 3ncv_A DNA mismatch repair pro 96.5 0.0099 3.4E-07 46.8 7.9 95 31-149 27-128 (220)
5 2y4x_A PILP protein; biosynthe 41.1 27 0.00093 23.6 3.5 29 31-59 21-52 (93)
6 2ivw_A PILP pilot protein; lip 40.6 23 0.00078 24.9 3.1 29 31-59 24-55 (113)
7 2dyq_A Amyloid beta A4 precurs 38.7 70 0.0024 23.2 5.6 41 30-71 85-142 (144)
8 2lc4_A PILP protein; type IV p 37.2 28 0.00096 24.4 3.1 30 31-60 28-60 (111)
9 2dew_X Protein-arginine deimin 23.4 1.1E+02 0.0037 27.8 5.2 103 30-148 470-578 (671)
10 4av2_M PILP protein, type IV p 16.6 1E+02 0.0036 23.0 3.1 29 31-59 92-123 (181)
No 1
>3rbn_A DNA mismatch repair protein MLH1; structural genomics, structural genomics consortium, SGC, DN mismatch repair, endonucleases, protein binding; HET: DNA; 2.16A {Homo sapiens}
Probab=100.00 E-value=1.1e-57 Score=376.82 Aligned_cols=147 Identities=47% Similarity=0.816 Sum_probs=144.8
Q ss_pred ceeeeeechHHHHHHHHHHhcChhHHHHhhcCeEEEEecCCeeEEEecCceEeEehHHHHHHHHHHHHHhhcCCCCeecc
Q psy1957 3 LRREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFGNFGVFRF 82 (149)
Q Consensus 3 ~~~~~~L~Sv~~Lr~ev~~~~~~~L~~i~~~~~fVG~vd~~~~LiQ~~t~LyLvn~~~l~~ElfYQ~~L~~Fgnf~~i~l 82 (149)
+||+|+||||++||++|++++|++||++|+|||||||||++++||||+|+|||||+..+++|+|||++|++|||||+|+|
T Consensus 30 ~~r~~~LtSV~~Lr~ev~~~~h~~Ltei~~~~tfVG~VD~~~aLiQ~~tkLYLvd~~~l~~ElFYQ~~L~~FgNfg~i~L 109 (284)
T 3rbn_A 30 RRRIINLTSVLSLQEEINEQGHEVLREMLHNHSFVGCVNPQWALAQHQTKLYLLNTTKLSEELFYQILIYDFANFGVLRL 109 (284)
T ss_dssp CCSCCCCHHHHHHHHHHHHHBCHHHHHHHHTCEEEEESSSSEEEEEETTEEEEEEHHHHHHHHHHHHHHHSTTCCEEEEE
T ss_pred ceeEEechhHHHHHHHHHHhcCHHHHHHHHhCeEEEEECCCeeEEEeCCeEEEecHHHHHHHHHHHHHHHHhcCCCeEee
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHhHHHhhhccceEEEccCCeeeeccccC
Q psy1957 83 ENPVSIKELLLISLDLPDSGWDPSNGSKSEVAESASQFLLSRADMLTDYFSMEIDTQARLRTLPLLV 149 (149)
Q Consensus 83 ~~p~~l~~Ll~~al~~~~~~~~~~d~~~~~la~~~~~~L~~~~eML~eYFsi~I~~~g~L~slP~ll 149 (149)
++|+||+||+.+|++.++++|+++|++++++|+.++++|++||+||.|||||+||++|+|+|||+|+
T Consensus 110 ~~P~~L~dLl~~al~~~~~~~~e~d~~~~~~~e~i~~~L~~~~eML~EYFsi~Id~~g~L~slPlLl 176 (284)
T 3rbn_A 110 SEPAPLFDLAMLALDSPESGWTEEDGPKEGLAEYIVEFLKKKAEMLADYFSLEIDEEGNLIGLPLLI 176 (284)
T ss_dssp EEEEEHHHHHHHHHTSGGGTCCTTSCCHHHHHHHHHHHHHHHHHHHHHHHCCEECTTSEEEEEEECS
T ss_pred CCCCCHHHHHHHHhhcccccCCcccccHHHHHHHHHHHHHHHHHHHHhheeEEEeCCCcEEEechhh
Confidence 9999999999999999989999999999999999999999999999999999999999999999986
No 2
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*
Probab=96.66 E-value=0.0035 Score=48.29 Aligned_cols=95 Identities=17% Similarity=0.245 Sum_probs=66.8
Q ss_pred hhcCeEEEEecCCeeEEEecCceEeEehHHHHHHHHHHHHHhhcCC--CCeecccCCCCHHHHHHHhhcCCCCCCCCCCC
Q psy1957 31 FRKLSFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFGN--FGVFRFENPVSIKELLLISLDLPDSGWDPSNG 108 (149)
Q Consensus 31 ~~~~~fVG~vd~~~~LiQ~~t~LyLvn~~~l~~ElfYQ~~L~~Fgn--f~~i~l~~p~~l~~Ll~~al~~~~~~~~~~d~ 108 (149)
|....++|.++..+.++|.+..||+||-.+--+-.-|...+..|++ ...-.|-.|+.+ +. ++
T Consensus 6 ~~~~~~igQ~~~~yIl~~~~~~L~lIDQHAAhERi~yE~l~~~~~~~~~~sQ~LL~P~~l--------~l-----s~--- 69 (197)
T 3kdg_A 6 VPIMYPIGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREKVGEVEPEVQEMIVPLTF--------HY-----ST--- 69 (197)
T ss_dssp CCCCEEEEEETTTEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHCSSCCEEEEEEEEEE--------EC-----CT---
T ss_pred CCCCeEEEEEcCEEEEEEeCCCEEEEEHHHHHHHHHHHHHHHHHccCCCCccccCCCEEE--------ec-----CH---
Confidence 4567899999999999999999999999998898999999988854 344455556543 11 11
Q ss_pred ChhHHHHHHHHHHHhHHHhhhccceEEEccCC----eeeeccccC
Q psy1957 109 SKSEVAESASQFLLSRADMLTDYFSMEIDTQA----RLRTLPLLV 149 (149)
Q Consensus 109 ~~~~la~~~~~~L~~~~eML~eYFsi~I~~~g----~L~slP~ll 149 (149)
.+ ...+.++.+.|.. +|++++..| .+.++|..+
T Consensus 70 --~e-----~~~l~~~~~~l~~-~Gf~~e~~g~~~~~v~~vP~~l 106 (197)
T 3kdg_A 70 --NE-----ALIIEQHKQELES-VGVFLESFGSNSYIVRCHPAWF 106 (197)
T ss_dssp --TH-----HHHHHHTHHHHHH-TTCCCEECSTTEEEEEEEETTS
T ss_pred --HH-----HHHHHHHHHHHHh-CCCEEEECCCCEEEEEecCccc
Confidence 11 2356677776654 455554333 389999764
No 3
>1x9z_A DNA mismatch repair protein MUTL; alpha-beta fold, dimer, replication, signaling protein; HET: DNA MSE; 2.10A {Escherichia coli} SCOP: d.292.1.1
Probab=96.56 E-value=0.005 Score=46.96 Aligned_cols=91 Identities=14% Similarity=0.231 Sum_probs=64.5
Q ss_pred hcCeEEEEecCCeeEEEecCceEeEehHHHHHHHHHHHHHhhcCC--CCeecccCCCCHHHHHHHhhcCCCCCCCCCCCC
Q psy1957 32 RKLSFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFGN--FGVFRFENPVSIKELLLISLDLPDSGWDPSNGS 109 (149)
Q Consensus 32 ~~~~fVG~vd~~~~LiQ~~t~LyLvn~~~l~~ElfYQ~~L~~Fgn--f~~i~l~~p~~l~~Ll~~al~~~~~~~~~~d~~ 109 (149)
....++|.++.++.++|.+..||+||-.+. +-+-|...+.. ++ ...-.|-.|+.+ + -+
T Consensus 7 ~~~~vlgQ~~~~yIl~~~~~~L~lIDQHAA-ERi~yE~l~~~-~~~~~~~Q~LL~P~~l--------~----------ls 66 (188)
T 1x9z_A 7 SFGRVLTIVHSDCALLERDGNISLLSLPVA-ERWLRQAQLTP-GEAPVCAQPLLIPLRL--------K----------VS 66 (188)
T ss_dssp CCCEEEEEETTTEEEEEETTEEEEEEHHHH-HHHHHHHHHSB-TTBCCCEEEEEEEEEE--------E----------CC
T ss_pred CCceeeeeecCEEEEEEeCCCEEEEeHHHH-HHHHHHHHHHh-cCCCCCcccCCCCEEE--------E----------eC
Confidence 346789999999999999999999999999 99999999987 43 445556556543 1 01
Q ss_pred hhHHHHHHHHHHHhHHHhhhccceEEEccCC---eeeecccc
Q psy1957 110 KSEVAESASQFLLSRADMLTDYFSMEIDTQA---RLRTLPLL 148 (149)
Q Consensus 110 ~~~la~~~~~~L~~~~eML~eYFsi~I~~~g---~L~slP~l 148 (149)
+ .-...+.++.+.|.. +|++|+..| .+.++|..
T Consensus 67 ~-----~e~~~l~~~~~~l~~-~Gf~~e~~g~~~~v~~vP~~ 102 (188)
T 1x9z_A 67 A-----EEKSALEKAQSALAE-LGIDFQSDAQHVTIRAVPLP 102 (188)
T ss_dssp H-----HHHHHHHHHHHHHHH-TTCEEEECSSEEEEEEEEGG
T ss_pred H-----HHHHHHHHHHHHHHh-CCcEEEEcCCcEEEEecCch
Confidence 1 112466777776654 556665444 37888875
No 4
>3ncv_A DNA mismatch repair protein MUTL; endonuclease, dimer, hydrolase; HET: DNA; 2.40A {Neisseria gonorrhoeae}
Probab=96.49 E-value=0.0099 Score=46.77 Aligned_cols=95 Identities=19% Similarity=0.242 Sum_probs=66.9
Q ss_pred hhcCeEEEEecCCeeEEEecCceEeEehHHHHHHHHHHHHHhhcC---CCCeecccCCCCHHHHHHHhhcCCCCCCCCCC
Q psy1957 31 FRKLSFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFG---NFGVFRFENPVSIKELLLISLDLPDSGWDPSN 107 (149)
Q Consensus 31 ~~~~~fVG~vd~~~~LiQ~~t~LyLvn~~~l~~ElfYQ~~L~~Fg---nf~~i~l~~p~~l~~Ll~~al~~~~~~~~~~d 107 (149)
+--..++|.++..+.++|.+..||+||-.+--+-+-|.....++. ....-.|-.|+.+ +
T Consensus 27 ~p~g~vigQv~~~YIL~e~~~gL~lIDQHAAhERi~yE~l~~~~~~~~~~~sQ~LL~P~~l--------~---------- 88 (220)
T 3ncv_A 27 PPLGFAIAQLLGIYILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGNLQSQHLLIPVTF--------A---------- 88 (220)
T ss_dssp CTTCEEEEEETTTEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHSSCCEEEEEEEEEE--------E----------
T ss_pred CCCceeeeeEcCEEEEEEeCCCEEEEEHHHHHHHHHHHHHHHHHhccCCccceeeCCCeEE--------E----------
Confidence 345679999999999999999999999988888888888888774 3455566666543 1
Q ss_pred CChhHHHHHHHHHHHhHHHhhhccceEEEccCC----eeeeccccC
Q psy1957 108 GSKSEVAESASQFLLSRADMLTDYFSMEIDTQA----RLRTLPLLV 149 (149)
Q Consensus 108 ~~~~~la~~~~~~L~~~~eML~eYFsi~I~~~g----~L~slP~ll 149 (149)
-++ .-...+.++.+.|.. +|++|+..| .+.++|..+
T Consensus 89 Ls~-----~e~~~l~~~~~~L~~-lGf~ie~fg~~~v~V~~vP~~l 128 (220)
T 3ncv_A 89 ASH-----EECAALADHAETLAG-FGLELSDMGGNTLAVRAAPVML 128 (220)
T ss_dssp CCH-----HHHHHHHHHHHHHHH-TTCEEECCSTTEEEEEEEETTS
T ss_pred cCH-----HHHHHHHHHHHHHHh-CCCEEEECCCCEEEEEEcCccc
Confidence 011 112467777776654 566665433 388999764
No 5
>2y4x_A PILP protein; biosynthetic protein; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 2y4y_A
Probab=41.07 E-value=27 Score=23.56 Aligned_cols=29 Identities=17% Similarity=0.289 Sum_probs=24.8
Q ss_pred hhcCeEEEEecCC---eeEEEecCceEeEehH
Q psy1957 31 FRKLSFVGCATPC---MCLIQHETKLYIVNVT 59 (149)
Q Consensus 31 ~~~~~fVG~vd~~---~~LiQ~~t~LyLvn~~ 59 (149)
+.+..+||.+... +||||-+.++|-|..+
T Consensus 21 L~~L~mvG~l~~~~~~~ALV~~dg~v~~V~~G 52 (93)
T 2y4x_A 21 IETFEMVGTLSNAQGTFALVKGAGGVHRVRVG 52 (93)
T ss_dssp GGGCEEEEEEEETTEEEEEEEETTEEEEECTT
T ss_pred hhheEEEEEEccCCeEEEEEEeCCCEEEEccC
Confidence 6788999999754 9999999999998765
No 6
>2ivw_A PILP pilot protein; lipoprotein, pilus biogenesis, secretin; NMR {Neisseria meningitidis}
Probab=40.61 E-value=23 Score=24.93 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=24.8
Q ss_pred hhcCeEEEEecCC---eeEEEecCceEeEehH
Q psy1957 31 FRKLSFVGCATPC---MCLIQHETKLYIVNVT 59 (149)
Q Consensus 31 ~~~~~fVG~vd~~---~~LiQ~~t~LyLvn~~ 59 (149)
+.+..+||.+... ++|||-+.++|-|..+
T Consensus 24 Ld~LkmvGtl~~~~~~~ALV~~dG~vyrVk~G 55 (113)
T 2ivw_A 24 LENMRYVGILKSGQKVSGFIEAEGYVYTVGVG 55 (113)
T ss_dssp TTTEEEEEEEECSSSEEEEEEETTEEEEECSS
T ss_pred hhheEEEEEEccCCeEEEEEEeCCcEEEEccC
Confidence 5678999999754 9999999999998765
No 7
>2dyq_A Amyloid beta A4 precursor protein-binding family 3; phosphotyrosine-interaction domain (PTB/PID alzheimer'S disease, structural genomics, NPPSFA; 3.10A {Homo sapiens}
Probab=38.70 E-value=70 Score=23.23 Aligned_cols=41 Identities=22% Similarity=0.260 Sum_probs=30.0
Q ss_pred HhhcCeEEEEecCC---eeEEEe-cCceEeEe-------hHHHHH------HHHHHHHH
Q psy1957 30 VFRKLSFVGCATPC---MCLIQH-ETKLYIVN-------VTYVLE------ELFYQLML 71 (149)
Q Consensus 30 i~~~~~fVG~vd~~---~~LiQ~-~t~LyLvn-------~~~l~~------ElfYQ~~L 71 (149)
-+++-+|-|+ +.+ .+.|.| +++.++|. ...|++ .++||..|
T Consensus 85 ~vr~ISFcgv-gkd~r~FaFI~~~~~~~f~CHVF~ce~~A~~ls~aV~~Ac~l~Yqk~l 142 (144)
T 2dyq_A 85 PVRLVTFIGV-GRDPHTFGLIADLGRQSFQCAAFWCQPHAGGLSEAVQAACMVQYQKCL 142 (144)
T ss_dssp EGGGEEEEEE-CSSTTEEEEEEECSSSCEEEEEEECSSCTHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeeeec-CCCCcEEEEEEeCCCCcEEEEEEecCCchHHHHHHHHHHHHHHHHHHh
Confidence 4789999999 754 788888 55588774 344444 68999876
No 8
>2lc4_A PILP protein; type IV pilus, structural protein; NMR {Pseudomonas aeruginosa}
Probab=37.24 E-value=28 Score=24.38 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=25.3
Q ss_pred hhcCeEEEEecCC---eeEEEecCceEeEehHH
Q psy1957 31 FRKLSFVGCATPC---MCLIQHETKLYIVNVTY 60 (149)
Q Consensus 31 ~~~~~fVG~vd~~---~~LiQ~~t~LyLvn~~~ 60 (149)
+.+..+||.+... +||||-+.++|-|..+.
T Consensus 28 Ld~L~mvG~l~~~~~~~ALV~~dG~vyrVk~G~ 60 (111)
T 2lc4_A 28 IETFEMVGTLSNAQGTFALVKGAGGVHRVRVGD 60 (111)
T ss_dssp SSSCEEEEEEEETTEEEEEEEETTEEEEEETTC
T ss_pred hhheEEEEEEccCCeEEEEEEeCCcEEEEccCC
Confidence 5678999999754 99999999999998653
No 9
>2dew_X Protein-arginine deiminase type IV; histone modification enzyme, hydrolase; 2.10A {Homo sapiens} SCOP: b.2.9.1 b.6.1.6 d.126.1.5 PDB: 2dex_X 2dey_X 3b1u_A* 3b1t_A* 2dw5_A* 3apn_A 3apm_A 1wda_A* 1wd9_A* 1wd8_A 4dkt_A*
Probab=23.39 E-value=1.1e+02 Score=27.79 Aligned_cols=103 Identities=13% Similarity=0.181 Sum_probs=69.8
Q ss_pred HhhcCeEEEEecCCeeEEEecCc---eEeEehHHHHHHHHHHHHHhhcCCCCeec---ccCCCCHHHHHHHhhcCCCCCC
Q psy1957 30 VFRKLSFVGCATPCMCLIQHETK---LYIVNVTYVLEELFYQLMLHDFGNFGVFR---FENPVSIKELLLISLDLPDSGW 103 (149)
Q Consensus 30 i~~~~~fVG~vd~~~~LiQ~~t~---LyLvn~~~l~~ElfYQ~~L~~Fgnf~~i~---l~~p~~l~~Ll~~al~~~~~~~ 103 (149)
+...--+||.||+=..-+=..++ ..|+.-..-+.++|-+.-=.+.|+--.++ -.++.++.+++.-.-
T Consensus 470 LdtdWL~VGHVDEFm~FvPa~~~kGfrlllasP~a~~~Ll~~~q~~GhG~~~~f~g~~~~~~~tI~~iL~~~~------- 542 (671)
T 2dew_X 470 LYSDWLSVGHVDEFLSFVPAPDRKGFRLLLASPRSCYKLFQEQQNEGHGEALLFEGIKKKKQQKIKNILSNKT------- 542 (671)
T ss_dssp EECTTBSSCCGGGTEEEEECSSTTSEEEEEEEHHHHHHHHHHHHHTTCTTCEETTTCTTSCCEEHHHHHHCHH-------
T ss_pred ccccccccccceeeeEEeecCCCCceEEEecCHHHHHHHHHHHHhCCCCceeecccccccCCcCHHHHhcchh-------
Confidence 55566789999988766644333 35556666789999998888888853333 244567888875210
Q ss_pred CCCCCChhHHHHHHHHHHHhHHHhhhccceEEEccCCeeeecccc
Q psy1957 104 DPSNGSKSEVAESASQFLLSRADMLTDYFSMEIDTQARLRTLPLL 148 (149)
Q Consensus 104 ~~~d~~~~~la~~~~~~L~~~~eML~eYFsi~I~~~g~L~slP~l 148 (149)
-.+--.++.+.+.-+++.|+.=++|. ++.|+.+|.|
T Consensus 543 ------l~~~N~~~q~~Id~n~~iLKrElGLt---e~DII~vP~L 578 (671)
T 2dew_X 543 ------LREHNSFVERCIDWNRELLKRELGLA---ESDIIDIPQL 578 (671)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHTCC---GGGEEEEECC
T ss_pred ------hHHHHHHHHhhhhHHHHHHhhhcCCC---HHHeeccchh
Confidence 00112466677888889999888876 3469999876
No 10
>4av2_M PILP protein, type IV pilus biogenesis and competence protein P; protein transport, outer membrane protein; 26.00A {Neisseria meningitidis MC58}
Probab=16.61 E-value=1e+02 Score=22.99 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=24.9
Q ss_pred hhcCeEEEEecCC---eeEEEecCceEeEehH
Q psy1957 31 FRKLSFVGCATPC---MCLIQHETKLYIVNVT 59 (149)
Q Consensus 31 ~~~~~fVG~vd~~---~~LiQ~~t~LyLvn~~ 59 (149)
+.+..+||.+... ++|||-+.++|-|..+
T Consensus 92 Ld~L~mvG~l~~~~~~~alv~~dg~v~~V~~G 123 (181)
T 4av2_M 92 LENMRYVGILKSGQKVSGFIEAEGYVYTVGVG 123 (181)
T ss_dssp STTEEEEEEECSSSCCEEEEEETTEEEEECSS
T ss_pred hhheEEEEEEEeCCEEEEEEecCCCEEEEccC
Confidence 6778999999853 8999999999998765
Done!