RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy1957
         (149 letters)



>gnl|CDD|223704 COG0631, PTC1, Serine/threonine protein phosphatase [Signal
           transduction mechanisms].
          Length = 262

 Score = 28.5 bits (64), Expect = 1.2
 Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 13/80 (16%)

Query: 3   LRREIKLSSVRDLRGEIEKQKSSQLCEVFRKLS--------FVGCATPCMCLIQHETKLY 54
           L R    ++   L   +E+     + +    ++          G  T  + L+    KLY
Sbjct: 64  LARLFDETNFNSLNESLEELLKEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLY 123

Query: 55  IVNV----TYVL-EELFYQL 69
           + NV     Y+L +    QL
Sbjct: 124 VANVGDSRAYLLRDGELKQL 143


>gnl|CDD|233513 TIGR01657, P-ATPase-V, P-type ATPase of unknown pump specificity
           (type V).  These P-type ATPases form a distinct clade
           but the substrate of their pumping activity has yet to
           be determined. This clade has been designated type V in.
          Length = 1054

 Score = 27.3 bits (61), Expect = 3.7
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 6/73 (8%)

Query: 52  KLYIVNVTYVLEELFYQLMLHDFGNFGVFRFENPVSI--KELLLISLDLPDSGWD----P 105
           KL I  VT +L      L+L     + V     PVS    E ++I    P+SG D     
Sbjct: 15  KLIIYLVTLILTFGLVLLLLTWLPEWKVKLRYVPVSNEDAETVVIVDPTPNSGSDYIVEL 74

Query: 106 SNGSKSEVAESAS 118
           SN S S   ++ +
Sbjct: 75  SNKSLSNDLQTEN 87


>gnl|CDD|222999 PHA03142, PHA03142, helicase-primase primase subunit BSLF1;
           Provisional.
          Length = 835

 Score = 26.9 bits (60), Expect = 4.9
 Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 19/94 (20%)

Query: 63  EELFYQLMLHDFGNFGVFRFENPVSIKELLLISLDLPDSGWDPSNGSK-SEV------AE 115
              F+ + LH+        F  P+   E + +SL LP     P  G +  EV      AE
Sbjct: 31  SGFFFCV-LHN-------CFSYPIL-GEEVSLSLCLPAK--RPGGGERCLEVFQLRLPAE 79

Query: 116 SASQFLLSRADMLTDYFSMEIDTQARLRTL-PLL 148
            A  FL     +  D     +D  A L++  P+L
Sbjct: 80  EALPFLFGGKPLTADDIQTYLDRAAALKSFKPIL 113


>gnl|CDD|222733 pfam14396, CFTR_R, Cystic fibrosis TM conductance regulator
          (CFTR), regulator domain. 
          Length = 213

 Score = 25.9 bits (57), Expect = 7.5
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 6  EIKLSSVRDLRGEIEKQKSSQL--CEVFRKLSFVGCATPCMCLIQHET 51
          E K  S +      EK+K+S L      RK SFV  +   M  I+ E+
Sbjct: 43 EPKKQSFKQTGEFGEKRKNSILNPLNSARKFSFVQKSQLQMNGIEEES 90


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.323    0.138    0.400 

Gapped
Lambda     K      H
   0.267   0.0650    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,408,757
Number of extensions: 644423
Number of successful extensions: 447
Number of sequences better than 10.0: 1
Number of HSP's gapped: 447
Number of HSP's successfully gapped: 13
Length of query: 149
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 61
Effective length of database: 7,034,450
Effective search space: 429101450
Effective search space used: 429101450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.7 bits)