RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1957
         (149 letters)



>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 68

 Score = 24.8 bits (54), Expect = 1.5
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 1  MDLRREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCL----IQHETKLYIV 56
          M+L+R+   +  R      E+++ S++ E F  L     + P   L    I      YI 
Sbjct: 1  MELKRKTTNADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIE 60

Query: 57 NVTYVLEE 64
           +  +L +
Sbjct: 61 GLQALLRD 68


>d2bmob1 d.17.4.4 (B:1-194) Nitrobenzene dioxygenase beta subunit,
           NBDO-beta {Comamonas sp. JS765 [TaxId: 58226]}
          Length = 194

 Score = 24.2 bits (52), Expect = 7.9
 Identities = 8/43 (18%), Positives = 18/43 (41%)

Query: 86  VSIKELLLISLDLPDSGWDPSNGSKSEVAESASQFLLSRADML 128
           ++ +E  L+S    +       G  S++ +  +  L   A +L
Sbjct: 3   INTQEDKLVSAHDAEEFHRFFVGHDSDLQQEVTTLLTREAHLL 45


>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 107

 Score = 23.5 bits (50), Expect = 9.4
 Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 6/35 (17%)

Query: 57  NVTYVLEELFYQLM-LHD-----FGNFGVFRFENP 85
             TYV  +   +   L       FG   VF+F +P
Sbjct: 73  AETYVDGQRISETTMLQSGMRLQFGTSHVFKFVDP 107


>d2prva1 d.369.1.1 (A:1-152) Uncharacterized protein YobK {Bacillus
           subtilis [TaxId: 1423]}
          Length = 152

 Score = 23.5 bits (50), Expect = 9.5
 Identities = 10/40 (25%), Positives = 17/40 (42%)

Query: 99  PDSGWDPSNGSKSEVAESASQFLLSRADMLTDYFSMEIDT 138
           P   WD   G +  VA+S  +F  ++     D +  + D 
Sbjct: 111 PVVEWDRVIGYQDTVADSFIEFFYNKIQEAKDDWDEDEDW 150


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.138    0.400 

Gapped
Lambda     K      H
   0.267   0.0546    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 532,257
Number of extensions: 22448
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 7
Length of query: 149
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 72
Effective length of database: 1,350,386
Effective search space: 97227792
Effective search space used: 97227792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.1 bits)