BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1958
(202 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9JK91|MLH1_MOUSE DNA mismatch repair protein Mlh1 OS=Mus musculus GN=Mlh1 PE=2 SV=2
Length = 760
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/94 (52%), Positives = 70/94 (74%), Gaps = 2/94 (2%)
Query: 6 VNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEPPTTKAKPS 65
VNVHPTKHEVHFLHE++I++RVQ +E LLGSN+SR+++TQT LP + P A+P+
Sbjct: 305 VNVHPTKHEVHFLHEESILQRVQQHIESKLLGSNSSRMYFTQTLLPGLAG-PSGEAARPT 363
Query: 66 S-TSSNTNNTTTTTTPAYKLVRTDASEQKLDRFL 98
+ +S++ + + AY++VRTD+ EQKLD FL
Sbjct: 364 TGVASSSTSGSGDKVYAYQMVRTDSREQKLDAFL 397
Score = 87.4 bits (215), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
Query: 105 QRATSKQTSNKKY-KRREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQ 163
+ A+ K+ + Y +RR I L+SV L+ EI ++ L E+ R SFVGC P L Q
Sbjct: 487 ENASGKEMTAACYPRRRIINLTSVLSLQEEISERCHETLREMLRNHSFVGCVNPQWALAQ 546
Query: 164 HETKLYIVNVTYVLEELFYQLMLHDFGNFGVFRF 197
H+TKLY++N T + EELFYQ++++DF NFGV R
Sbjct: 547 HQTKLYLLNTTKLSEELFYQILIYDFANFGVLRL 580
>sp|P97679|MLH1_RAT DNA mismatch repair protein Mlh1 OS=Rattus norvegicus GN=Mlh1 PE=2
SV=1
Length = 757
Score = 100 bits (249), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 71/95 (74%), Gaps = 4/95 (4%)
Query: 6 VNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEPPTTKAKPS 65
VNVHPTKHEVHFLHE++I+ERVQ +E LLGSN+SR+++TQT LP + P+ +A S
Sbjct: 305 VNVHPTKHEVHFLHEESILERVQQHIESKLLGSNSSRMYFTQTLLPGLAG--PSGEAVKS 362
Query: 66 ST--SSNTNNTTTTTTPAYKLVRTDASEQKLDRFL 98
+T +S++ + + AY++VRTD+ +QKLD F+
Sbjct: 363 TTGIASSSTSGSGDKVHAYQMVRTDSRDQKLDAFM 397
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 85/176 (48%), Gaps = 27/176 (15%)
Query: 49 KLPSFSTEP-PTTKAKPSSTSSNTNNTTTTTTPAYKLVRTDASEQKLDRFL--SKYIADQ 105
+LPS +P P + + S + + + PA D++ + + + S+ +A Q
Sbjct: 403 RLPSQPQDPVPGNRTEGSPEKAMQKDQEISELPAPMEAAADSASLERESVIGASEVVAPQ 462
Query: 106 RATSKQTSNKKY------------------------KRREIKLSSVRDLRGEIEKQKSSQ 141
R S S++K +RR I L+SV L+ EI +
Sbjct: 463 RHPSSPGSSRKRHPEDSDVEMMENDSRKEMTAACYPRRRIINLTSVLSLQEEINDRGHET 522
Query: 142 LCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFGNFGVFRF 197
L E+ R +FVGC P L QH+TKLY++N T + EELFYQ++++DF NFGV R
Sbjct: 523 LREMLRNHTFVGCVNPQWALAQHQTKLYLLNTTKLSEELFYQILIYDFANFGVLRL 578
>sp|P40692|MLH1_HUMAN DNA mismatch repair protein Mlh1 OS=Homo sapiens GN=MLH1 PE=1 SV=1
Length = 756
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 67/93 (72%)
Query: 6 VNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEPPTTKAKPS 65
VNVHPTKHEVHFLHE++I+ERVQ +E LLGSN+SR+++TQT LP + +
Sbjct: 305 VNVHPTKHEVHFLHEESILERVQQHIESKLLGSNSSRMYFTQTLLPGLAGPSGEMVKSTT 364
Query: 66 STSSNTNNTTTTTTPAYKLVRTDASEQKLDRFL 98
S +S++ + ++ A+++VRTD+ EQKLD FL
Sbjct: 365 SLTSSSTSGSSDKVYAHQMVRTDSREQKLDAFL 397
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 53/80 (66%)
Query: 118 KRREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVL 177
+RR I L+SV L+ EI +Q L E+ SFVGC P L QH+TKLY++N T +
Sbjct: 497 RRRIINLTSVLSLQEEINEQGHEVLREMLHNHSFVGCVNPQWALAQHQTKLYLLNTTKLS 556
Query: 178 EELFYQLMLHDFGNFGVFRF 197
EELFYQ++++DF NFGV R
Sbjct: 557 EELFYQILIYDFANFGVLRL 576
>sp|Q9P7W6|MLH1_SCHPO Putative MutL protein homolog 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mlh1 PE=2 SV=1
Length = 684
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 97/228 (42%), Gaps = 46/228 (20%)
Query: 2 DQPPVNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEPPTTK 61
+Q VNVHP+K VHFL++ I + L + L ++T R + Q +PS S
Sbjct: 312 EQLDVNVHPSKRIVHFLYDQEIATSICDKLGEILERTDTERSYPLQAMIPSIS------- 364
Query: 62 AKPSSTSSNTNNTTTTTTPAYK-----LVRTDASEQKLDRFLSKYI-------------- 102
NT N +++ A + LVRTD E+ + LS
Sbjct: 365 --------NTKNAESSSQKAVRTYENYLVRTDPRERSIKSMLSDNFLQRSSNNYDNEIIE 416
Query: 103 -ADQRATSKQTSN--KKYKRREI-------KLSSVRDLRGEIEKQKSSQLCEVFRKLSFV 152
D ++K +N K + EI L S++ L+ ++ + + +V
Sbjct: 417 KVDSANSNKNATNDIKDLQTEEIVEEGNSIDLESIKSLQKQVINSMHVLATNILTEHKYV 476
Query: 153 G--CATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFGNFGVFRFE 198
G C T + +QH LY+V+ + LFYQ+ L +FGN+G F E
Sbjct: 477 GLVCPTRRIAAVQHNIGLYVVDYGKLSYHLFYQICLTEFGNYGEFVLE 524
>sp|P38920|MLH1_YEAST DNA mismatch repair protein MLH1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MLH1 PE=1 SV=2
Length = 769
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 7/110 (6%)
Query: 91 EQKLDRFLSKYIADQRATSKQTSNKKY-----KRREIKLSSVRDLRGEIEKQKSSQLCEV 145
+QKL + IAD + S Y +R + L+S++ LR +++ +L ++
Sbjct: 473 KQKLGDYKVPSIADDEKNALPISKDGYIRVPKERVNVNLTSIKKLREKVDDSIHRELTDI 532
Query: 146 FRKLSFVGCATP--CMCLIQHETKLYIVNVTYVLEELFYQLMLHDFGNFG 193
F L++VG + IQH+ KL++++ V ELFYQ+ L DF NFG
Sbjct: 533 FANLNYVGVVDEERRLAAIQHDLKLFLIDYGSVCYELFYQIGLTDFANFG 582
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 54/114 (47%), Gaps = 24/114 (21%)
Query: 6 VNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEPPTTKAKPS 65
VNVHPTK EV FL +D IIE++ + L L +TSR F K S ST P + +
Sbjct: 305 VNVHPTKREVRFLSQDEIIEKIANQLHAELSAIDTSRTF----KASSISTNKPESLIPFN 360
Query: 66 ST-SSNTN-----------NTTTTTTPAY--------KLVRTDASEQKLDRFLS 99
T S+ N N+ TT KLVR DAS+ K+ FLS
Sbjct: 361 DTIESDRNRKSLRQAQVVENSYTTANSQLRKAKRQENKLVRIDASQAKITSFLS 414
>sp|Q54KD8|MLH1_DICDI DNA mismatch repair protein Mlh1 OS=Dictyostelium discoideum
GN=mlh1 PE=3 SV=1
Length = 884
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%)
Query: 112 TSNKKYKRREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIV 171
T K K ++++L+S++ L E + L E F FVGC L+Q KLY++
Sbjct: 611 TPRKTRKYKQVELTSIKTLISEFQSNVHDGLKEFFNDCVFVGCLDHSYALVQFGKKLYLI 670
Query: 172 NVTYVLEELFYQLMLHDFGNFGVFRFEGSF 201
N+ + +ELFYQL L F +F +F S
Sbjct: 671 NLENITKELFYQLSLLRFSDFDSIKFSQSL 700
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 17/113 (15%)
Query: 4 PP----VNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEPPT 59
PP VN+HPTK EV LHE+ IIE +Q +++ L S+ S+ F TQ LP F + +
Sbjct: 387 PPKNIDVNIHPTKSEVKILHEEQIIEFIQQKVDQELSISSNSKTFSTQILLPGFDQDNVS 446
Query: 60 TKAKPSSTSSNTNNT----------TTTTTP---AYKLVRTDASEQKLDRFLS 99
+ K S +++ T+ P A +R+D+ Q LD FL+
Sbjct: 447 SSQKKQKNSQSSSTQTKSTNNNNNPTSRKEPIEYAKDKIRSDSKSQTLDAFLN 499
>sp|A5GEV5|MUTL_GEOUR DNA mismatch repair protein MutL OS=Geobacter uraniireducens
(strain Rf4) GN=mutL PE=3 SV=1
Length = 602
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 2 DQPPVNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEPPTTK 61
D+ VNVHPTKHEV F + + + +Q+ LE L + R Q F++ PP ++
Sbjct: 293 DEVDVNVHPTKHEVRFREQGRVHDAIQAALESVLRATPWVR---KQAAPQPFASPPPASE 349
Query: 62 A 62
A
Sbjct: 350 A 350
>sp|C1CBX8|MUTL_STRZJ DNA mismatch repair protein MutL OS=Streptococcus pneumoniae
(strain JJA) GN=mutL PE=3 SV=1
Length = 649
Score = 38.9 bits (89), Expect = 0.024, Method: Composition-based stats.
Identities = 52/207 (25%), Positives = 82/207 (39%), Gaps = 33/207 (15%)
Query: 6 VNVHPTKHEVHFLHEDTIIERV-----QSMLEKTLL---------GSNTSRVFYTQTKLP 51
VNVHPTK EV E ++ V S+ E+TL+ + +R QT LP
Sbjct: 297 VNVHPTKQEVRISKEKELMALVSEAIANSLKEQTLIPDALENLAKSTVRNREKVEQTILP 356
Query: 52 SFSTEPPTTKAKPSSTSSNTNNTTTTTTPAYKLVRTDA-------SEQKLDRFLSKYIAD 104
K +PS S T Y++ TD +++ LDR L+K
Sbjct: 357 LKENTLYYEKTEPSRPSQ-------TEVADYQVELTDEGQDLTLFAKETLDR-LTKPAKL 408
Query: 105 QRATSKQTSNKKYKRREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQH 164
A K + + E+ L+S+ ++E++++S F +L F G Q
Sbjct: 409 HFAERKPANYDQLDHPELDLASIDKAYDKLEREEASS----FPELEFFGQMHGTYLFAQG 464
Query: 165 ETKLYIVNVTYVLEELFYQLMLHDFGN 191
LYI++ E + Y+ GN
Sbjct: 465 RDGLYIIDQHAAQERVKYEEYRESIGN 491
>sp|B2IS10|MUTL_STRPS DNA mismatch repair protein MutL OS=Streptococcus pneumoniae
(strain CGSP14) GN=mutL PE=3 SV=1
Length = 649
Score = 38.9 bits (89), Expect = 0.025, Method: Composition-based stats.
Identities = 52/207 (25%), Positives = 82/207 (39%), Gaps = 33/207 (15%)
Query: 6 VNVHPTKHEVHFLHEDTIIERV-----QSMLEKTLL---------GSNTSRVFYTQTKLP 51
VNVHPTK EV E ++ V S+ E+TL+ + +R QT LP
Sbjct: 297 VNVHPTKQEVRISKEKELMTLVSEAIANSLKEQTLIPDALENLAKSTVRNREKVEQTILP 356
Query: 52 SFSTEPPTTKAKPSSTSSNTNNTTTTTTPAYKLVRTDA-------SEQKLDRFLSKYIAD 104
K +PS S T Y++ TD +++ LDR L+K
Sbjct: 357 LKENTLYYEKTEPSRPSQ-------TEVADYQVELTDEGQDLTLFAKETLDR-LTKPAKL 408
Query: 105 QRATSKQTSNKKYKRREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQH 164
A K + + E+ L+S+ ++E++++S F +L F G Q
Sbjct: 409 HFAERKPANYDQLDHPELDLASIDKAYDKLEREEASS----FPELEFFGQMHGTYLFAQG 464
Query: 165 ETKLYIVNVTYVLEELFYQLMLHDFGN 191
LYI++ E + Y+ GN
Sbjct: 465 RDGLYIIDQHAAQERVKYEEYRESIGN 491
>sp|B8ZKC9|MUTL_STRPJ DNA mismatch repair protein MutL OS=Streptococcus pneumoniae
(strain ATCC 700669 / Spain 23F-1) GN=mutL PE=3 SV=1
Length = 649
Score = 38.9 bits (89), Expect = 0.025, Method: Composition-based stats.
Identities = 52/207 (25%), Positives = 82/207 (39%), Gaps = 33/207 (15%)
Query: 6 VNVHPTKHEVHFLHEDTIIERV-----QSMLEKTLL---------GSNTSRVFYTQTKLP 51
VNVHPTK EV E ++ V S+ E+TL+ + +R QT LP
Sbjct: 297 VNVHPTKQEVRISKEKELMTLVSEAIANSLKEQTLIPDALENLAKSTVRNREKVEQTILP 356
Query: 52 SFSTEPPTTKAKPSSTSSNTNNTTTTTTPAYKLVRTDA-------SEQKLDRFLSKYIAD 104
K +PS S T Y++ TD +++ LDR L+K
Sbjct: 357 LKENTLYYEKTEPSRPSQ-------TEVADYQVELTDEGQDLTLFAKETLDR-LTKPAKL 408
Query: 105 QRATSKQTSNKKYKRREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQH 164
A K + + E+ L+S+ ++E++++S F +L F G Q
Sbjct: 409 HFAERKPANYDQLDHPELDLASIDKAYDKLEREEASS----FPELEFFGQMHGTYLFAQG 464
Query: 165 ETKLYIVNVTYVLEELFYQLMLHDFGN 191
LYI++ E + Y+ GN
Sbjct: 465 RDGLYIIDQHAAQERVKYEEYRESIGN 491
>sp|Q04MR4|MUTL_STRP2 DNA mismatch repair protein MutL OS=Streptococcus pneumoniae
serotype 2 (strain D39 / NCTC 7466) GN=mutL PE=3 SV=1
Length = 649
Score = 38.9 bits (89), Expect = 0.025, Method: Composition-based stats.
Identities = 52/207 (25%), Positives = 82/207 (39%), Gaps = 33/207 (15%)
Query: 6 VNVHPTKHEVHFLHEDTIIERV-----QSMLEKTLL---------GSNTSRVFYTQTKLP 51
VNVHPTK EV E ++ V S+ E+TL+ + +R QT LP
Sbjct: 297 VNVHPTKQEVRISKEKELMTLVSEAIANSLKEQTLIPDALENLAKSTVRNREKVEQTILP 356
Query: 52 SFSTEPPTTKAKPSSTSSNTNNTTTTTTPAYKLVRTDA-------SEQKLDRFLSKYIAD 104
K +PS S T Y++ TD +++ LDR L+K
Sbjct: 357 LKENTLYYEKTEPSRPSQ-------TEVADYQVELTDEGQDLTLFAKETLDR-LTKPAKL 408
Query: 105 QRATSKQTSNKKYKRREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQH 164
A K + + E+ L+S+ ++E++++S F +L F G Q
Sbjct: 409 HFAERKPANYDQLDHPELDLASIDKAYDKLEREEASS----FPELEFFGQMHGTYLFAQG 464
Query: 165 ETKLYIVNVTYVLEELFYQLMLHDFGN 191
LYI++ E + Y+ GN
Sbjct: 465 RDGLYIIDQHAAQERVKYEEYRESIGN 491
>sp|P0A3R2|HEXB_STRR6 DNA mismatch repair protein HexB OS=Streptococcus pneumoniae
(strain ATCC BAA-255 / R6) GN=hexB PE=3 SV=1
Length = 649
Score = 38.9 bits (89), Expect = 0.025, Method: Composition-based stats.
Identities = 52/207 (25%), Positives = 82/207 (39%), Gaps = 33/207 (15%)
Query: 6 VNVHPTKHEVHFLHEDTIIERV-----QSMLEKTLL---------GSNTSRVFYTQTKLP 51
VNVHPTK EV E ++ V S+ E+TL+ + +R QT LP
Sbjct: 297 VNVHPTKQEVRISKEKELMTLVSEAIANSLKEQTLIPDALENLAKSTVRNREKVEQTILP 356
Query: 52 SFSTEPPTTKAKPSSTSSNTNNTTTTTTPAYKLVRTDA-------SEQKLDRFLSKYIAD 104
K +PS S T Y++ TD +++ LDR L+K
Sbjct: 357 LKENTLYYEKTEPSRPSQ-------TEVADYQVELTDEGQDLTLFAKETLDR-LTKPAKL 408
Query: 105 QRATSKQTSNKKYKRREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQH 164
A K + + E+ L+S+ ++E++++S F +L F G Q
Sbjct: 409 HFAERKPANYDQLDHPELDLASIDKAYDKLEREEASS----FPELEFFGQMHGTYLFAQG 464
Query: 165 ETKLYIVNVTYVLEELFYQLMLHDFGN 191
LYI++ E + Y+ GN
Sbjct: 465 RDGLYIIDQHAAQERVKYEEYRESIGN 491
>sp|P0A3R1|HEXB_STRPN DNA mismatch repair protein HexB OS=Streptococcus pneumoniae
serotype 4 (strain ATCC BAA-334 / TIGR4) GN=hexB PE=3
SV=1
Length = 649
Score = 38.9 bits (89), Expect = 0.025, Method: Composition-based stats.
Identities = 52/207 (25%), Positives = 82/207 (39%), Gaps = 33/207 (15%)
Query: 6 VNVHPTKHEVHFLHEDTIIERV-----QSMLEKTLL---------GSNTSRVFYTQTKLP 51
VNVHPTK EV E ++ V S+ E+TL+ + +R QT LP
Sbjct: 297 VNVHPTKQEVRISKEKELMTLVSEAIANSLKEQTLIPDALENLAKSTVRNREKVEQTILP 356
Query: 52 SFSTEPPTTKAKPSSTSSNTNNTTTTTTPAYKLVRTDA-------SEQKLDRFLSKYIAD 104
K +PS S T Y++ TD +++ LDR L+K
Sbjct: 357 LKENTLYYEKTEPSRPSQ-------TEVADYQVELTDEGQDLTLFAKETLDR-LTKPAKL 408
Query: 105 QRATSKQTSNKKYKRREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQH 164
A K + + E+ L+S+ ++E++++S F +L F G Q
Sbjct: 409 HFAERKPANYDQLDHPELDLASIDKAYDKLEREEASS----FPELEFFGQMHGTYLFAQG 464
Query: 165 ETKLYIVNVTYVLEELFYQLMLHDFGN 191
LYI++ E + Y+ GN
Sbjct: 465 RDGLYIIDQHAAQERVKYEEYRESIGN 491
>sp|C1CP43|MUTL_STRZT DNA mismatch repair protein MutL OS=Streptococcus pneumoniae
(strain Taiwan19F-14) GN=mutL PE=3 SV=1
Length = 649
Score = 38.9 bits (89), Expect = 0.026, Method: Composition-based stats.
Identities = 52/207 (25%), Positives = 82/207 (39%), Gaps = 33/207 (15%)
Query: 6 VNVHPTKHEVHFLHEDTIIERV-----QSMLEKTLL---------GSNTSRVFYTQTKLP 51
VNVHPTK EV E ++ V S+ E+TL+ + +R QT LP
Sbjct: 297 VNVHPTKQEVRISKEKELMTLVSEAIANSLKEQTLIPDALENLAKSTVRNREKVDQTILP 356
Query: 52 SFSTEPPTTKAKPSSTSSNTNNTTTTTTPAYKLVRTDA-------SEQKLDRFLSKYIAD 104
K +PS S T Y++ TD +++ LDR L+K
Sbjct: 357 LKENTLYYEKTEPSRPSQ-------TEVADYQVELTDEGQDLTLFAKETLDR-LTKPAKL 408
Query: 105 QRATSKQTSNKKYKRREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQH 164
A K + + E+ L+S+ ++E++++S F +L F G Q
Sbjct: 409 HFAERKPANYDQLDHPELDLASIDKAYDKLEREEASS----FPELEFFGQMHGTYLFAQG 464
Query: 165 ETKLYIVNVTYVLEELFYQLMLHDFGN 191
LYI++ E + Y+ GN
Sbjct: 465 RDGLYIIDQHAAQERVKYEEYRESIGN 491
>sp|C1CI68|MUTL_STRZP DNA mismatch repair protein MutL OS=Streptococcus pneumoniae
(strain P1031) GN=mutL PE=3 SV=1
Length = 649
Score = 38.9 bits (89), Expect = 0.026, Method: Composition-based stats.
Identities = 52/207 (25%), Positives = 82/207 (39%), Gaps = 33/207 (15%)
Query: 6 VNVHPTKHEVHFLHEDTIIERV-----QSMLEKTLL---------GSNTSRVFYTQTKLP 51
VNVHPTK EV E ++ V S+ E+TL+ + +R QT LP
Sbjct: 297 VNVHPTKQEVRISKEKELMTLVSEAIANSLKEQTLIPDALENLAKSTVRNREKVDQTILP 356
Query: 52 SFSTEPPTTKAKPSSTSSNTNNTTTTTTPAYKLVRTDA-------SEQKLDRFLSKYIAD 104
K +PS S T Y++ TD +++ LDR L+K
Sbjct: 357 LKENTLYYEKTEPSRPSQ-------TEVADYQVELTDEGQDLTLFAKETLDR-LTKPAKL 408
Query: 105 QRATSKQTSNKKYKRREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQH 164
A K + + E+ L+S+ ++E++++S F +L F G Q
Sbjct: 409 HFAERKPANYDQLDHPELDLASIDKAYDKLEREEASS----FPELEFFGQMHGTYLFAQG 464
Query: 165 ETKLYIVNVTYVLEELFYQLMLHDFGN 191
LYI++ E + Y+ GN
Sbjct: 465 RDGLYIIDQHAAQERVKYEEYRESIGN 491
>sp|B5E6C5|MUTL_STRP4 DNA mismatch repair protein MutL OS=Streptococcus pneumoniae
serotype 19F (strain G54) GN=mutL PE=3 SV=1
Length = 649
Score = 38.5 bits (88), Expect = 0.030, Method: Composition-based stats.
Identities = 52/207 (25%), Positives = 82/207 (39%), Gaps = 33/207 (15%)
Query: 6 VNVHPTKHEVHFLHEDTIIERV-----QSMLEKTLL---------GSNTSRVFYTQTKLP 51
VNVHPTK EV E ++ V S+ E+TL+ + +R QT LP
Sbjct: 297 VNVHPTKQEVRISKEKELMALVSEAIANSLKEQTLIPDALENLAKSTVRNREKVEQTILP 356
Query: 52 SFSTEPPTTKAKPSSTSSNTNNTTTTTTPAYKLVRTDA-------SEQKLDRFLSKYIAD 104
K +PS S T Y++ TD +++ LDR L+K
Sbjct: 357 LKENTFYYEKTEPSRPSQ-------TEVADYQVELTDEGQDLTLFAKETLDR-LTKPAKL 408
Query: 105 QRATSKQTSNKKYKRREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQH 164
A K + + E+ L+S+ ++E++++S F +L F G Q
Sbjct: 409 HFAERKPANYDQLDHPELDLASIDKAYDKLEREEASS----FPELEFFGQMHGTYLFAQG 464
Query: 165 ETKLYIVNVTYVLEELFYQLMLHDFGN 191
LYI++ E + Y+ GN
Sbjct: 465 RDGLYIIDQHAAQERVKYEEYRESIGN 491
>sp|A1AT89|MUTL_PELPD DNA mismatch repair protein MutL OS=Pelobacter propionicus (strain
DSM 2379) GN=mutL PE=3 SV=1
Length = 608
Score = 37.0 bits (84), Expect = 0.10, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
Query: 4 PP----VNVHPTKHEVHFLHEDTIIERVQSMLEKTL 35
PP VNVHPTKHEV F + + + +QS LE+ L
Sbjct: 291 PPAEVDVNVHPTKHEVRFRRQSLVHDTLQSALEELL 326
>sp|B3E5Z2|MUTL_GEOLS DNA mismatch repair protein MutL OS=Geobacter lovleyi (strain ATCC
BAA-1151 / DSM 17278 / SZ) GN=mutL PE=3 SV=1
Length = 589
Score = 36.6 bits (83), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 6 VNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEP--PTTKAK 63
VNVHPTKHEV F + + + +Q +LE+ L S + Q + EP P T
Sbjct: 295 VNVHPTKHEVRFRRQAQVHDTIQGVLEEVLRDSP-----WLQRREAPQRPEPARPYTTPP 349
Query: 64 PSS 66
PSS
Sbjct: 350 PSS 352
>sp|Q74BP0|MUTL_GEOSL DNA mismatch repair protein MutL OS=Geobacter sulfurreducens
(strain ATCC 51573 / DSM 12127 / PCA) GN=mutL PE=3 SV=1
Length = 606
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 6 VNVHPTKHEVHFLHEDTIIERVQSMLEKTL 35
VNVHPTKHEV F + + + +Q +E+TL
Sbjct: 297 VNVHPTKHEVRFRQQGIVHDVIQGAVEETL 326
>sp|A4J5Q3|MUTL_DESRM DNA mismatch repair protein MutL OS=Desulfotomaculum reducens
(strain MI-1) GN=mutL PE=3 SV=1
Length = 640
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 79/202 (39%), Gaps = 16/202 (7%)
Query: 6 VNVHPTKHEVHFLHEDTIIERVQSMLEKTL-----------LGSNTSRVFYTQTKLPSFS 54
VNVHPTK E+ E I E + + L +L + ++ T + +
Sbjct: 297 VNVHPTKMEIRMAREGEIQEELLAALSDSLNVPTAITGLWEIMPGRTKNTATDQRAENLE 356
Query: 55 TEPPTTKAKPSSTSSNTNNTTTTTTPAYKLVRTDASEQKLDRFLSKYIADQRATSKQTSN 114
+P + + + S P+ K++ +++L F S+ IA R + +
Sbjct: 357 VKPDSKEKELQPKESQHPRLVACDLPSGKIMPPRHDQEQL-HFSSRRIAPVRGKNSLLPD 415
Query: 115 KKYKRREIKLSSVRDLRGEIEKQKSS--QLCEV--FRKLSFVGCATPCMCLIQHETKLYI 170
+ ++ V D++ + K+ + Q E F L G P L E LYI
Sbjct: 416 EGSSINREEIPPVVDVKEQQLKENPNTYQPAETLGFPVLVPAGQVPPTYVLAHGEGGLYI 475
Query: 171 VNVTYVLEELFYQLMLHDFGNF 192
++ E + Y+ L+ GN+
Sbjct: 476 IDQHAAHERVLYEKYLYLLGNY 497
>sp|Q87L05|MUTL_VIBPA DNA mismatch repair protein MutL OS=Vibrio parahaemolyticus
serotype O3:K6 (strain RIMD 2210633) GN=mutL PE=3 SV=1
Length = 669
Score = 35.8 bits (81), Expect = 0.18, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 3 QPPVNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSF-STEPPTTK 61
Q VNVHP KHEV F + + + L L + +S + Q +F EP +
Sbjct: 297 QVDVNVHPAKHEVRFHQARLVHDFIYQALADAL--AQSSVIDKPQVNESAFHRAEPEERE 354
Query: 62 AKPSSTSSNTNNTTTTTTP 80
++P +T + + +TT P
Sbjct: 355 SQPETTPQYSPQSVSTTVP 373
>sp|B2VCU8|MUTL_ERWT9 DNA mismatch repair protein MutL OS=Erwinia tasmaniensis (strain
DSM 17950 / Et1/99) GN=mutL PE=3 SV=1
Length = 611
Score = 35.0 bits (79), Expect = 0.33, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 15/75 (20%)
Query: 3 QPPVNVHPTKHEVHF----LHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEPP 58
Q VNVHP KHEV F L D I + V S+L+++ G+ T LP +T P
Sbjct: 297 QVDVNVHPAKHEVRFHQSRLVHDFIYQGVVSVLQES--GAET---------LPEIATAQP 345
Query: 59 TTKAKPSSTSSNTNN 73
+ +P + + N
Sbjct: 346 AERWQPENRQAAGGN 360
>sp|B9M3N0|MUTL_GEOSF DNA mismatch repair protein MutL OS=Geobacter sp. (strain FRC-32)
GN=mutL PE=3 SV=1
Length = 598
Score = 35.0 bits (79), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 12/62 (19%)
Query: 6 VNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEPPTTKAKPS 65
VNVHPTKHEV F + + + +Q +E L S P T+P K + S
Sbjct: 297 VNVHPTKHEVRFREQGRVHDAIQEAVESVLRSS------------PWVKTQPVVQKTQAS 344
Query: 66 ST 67
++
Sbjct: 345 TS 346
>sp|A4IMI1|MUTL_GEOTN DNA mismatch repair protein MutL OS=Geobacillus thermodenitrificans
(strain NG80-2) GN=mutL PE=3 SV=1
Length = 645
Score = 34.7 bits (78), Expect = 0.44, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
Query: 6 VNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEPPTTKAKPS 65
VNVHP K EV F E + E L+ + + F +T +PS S + T KAK
Sbjct: 296 VNVHPAKLEVRFSKEAELNE---------LITATIRQAFRQRTLIPSVSADSKTVKAKAE 346
Query: 66 STS 68
S
Sbjct: 347 QAS 349
>sp|B2GB18|MUTL_LACF3 DNA mismatch repair protein MutL OS=Lactobacillus fermentum (strain
NBRC 3956 / LMG 18251) GN=mutL PE=3 SV=1
Length = 647
Score = 34.3 bits (77), Expect = 0.52, Method: Composition-based stats.
Identities = 36/197 (18%), Positives = 77/197 (39%), Gaps = 19/197 (9%)
Query: 6 VNVHPTKHEVHFLHEDTIIERVQSMLEKTL--------LGSNTSRVFYTQTKLPSFSTEP 57
VNVHP K EV E +++ ++ ++ + + +G + + + + +
Sbjct: 296 VNVHPAKREVRLSMEPQLVDLLERVVSQAIDQQNLIPDVGDRADELLTREQTVHAPRSAA 355
Query: 58 PTTKAKPSSTSSNTNNTTTTTTPAYKLVRTDASEQKLDRFLSKYIADQRATS-KQTSNKK 116
P + S + T+ P R++ + + F +Y ++ AT ++ K
Sbjct: 356 PRVSERASDEPPAWQPSPTSGEPVIISRRSELASPAVQAFDRRYQNEEVATPFGAQADAK 415
Query: 117 YKRREIKLSSVR---DLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNV 173
+ + + V D RG++ ++ F L+++G L Q LYIV+
Sbjct: 416 VSQAQPAVEQVSLDIDDRGDVASER-------FPDLTYLGQLHGTYLLAQASDGLYIVDQ 468
Query: 174 TYVLEELFYQLMLHDFG 190
E + Y+ + G
Sbjct: 469 HAAQERINYEYYREEIG 485
>sp|Q0AYB2|MUTL_SYNWW DNA mismatch repair protein MutL OS=Syntrophomonas wolfei subsp.
wolfei (strain Goettingen) GN=mutL PE=3 SV=1
Length = 584
Score = 34.3 bits (77), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 2 DQPPVNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEP 57
D VNVHP K E+ F E +I + +L TL +R + Q LP ++P
Sbjct: 291 DSIDVNVHPQKSEIRFRDEQSIFRSLCGLLRDTL----NARDYRLQDNLPQNRSQP 342
>sp|A6KXH3|MUTL_BACV8 DNA mismatch repair protein MutL OS=Bacteroides vulgatus (strain
ATCC 8482 / DSM 1447 / NCTC 11154) GN=mutL PE=3 SV=1
Length = 622
Score = 34.3 bits (77), Expect = 0.61, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 6 VNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNT--SRVFYTQ--TKLPSFSTEPPTTK 61
VN+HPTK E+ F +E I + + + +++TL N S F T+ +P+F P T
Sbjct: 297 VNIHPTKTEIKFENEQAIWQILAAAVKETLGKFNAVPSIDFDTEGMPDIPAFDASPYTGI 356
Query: 62 AKPSST-SSNTNNTTTTTTPAYKLVRTDASEQKLDRFLSKYIADQ 105
P +T + + N + P + ++L L ++ + Q
Sbjct: 357 QPPKTTYNPDYNPFNVSAAPPSSYSKPSKDWEQLYAGLERHASSQ 401
>sp|Q3A504|MUTL_PELCD DNA mismatch repair protein MutL OS=Pelobacter carbinolicus (strain
DSM 2380 / Gra Bd 1) GN=mutL PE=3 SV=1
Length = 628
Score = 33.9 bits (76), Expect = 0.76, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
Query: 3 QPPVNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEPPTTKA 62
Q VNVHPTKHEV F + + + + L L TS +P+ P T A
Sbjct: 296 QVDVNVHPTKHEVRFRQQALVHDFIVKALRDHLQQVPTS-------AMPAPGNSPFTVPA 348
Query: 63 KPSSTSSNTNNT--TTTTTPA 81
+ ++ S + T TPA
Sbjct: 349 RENAASVKPDETKPALADTPA 369
>sp|C6E4L2|MUTL_GEOSM DNA mismatch repair protein MutL OS=Geobacter sp. (strain M21)
GN=mutL PE=3 SV=1
Length = 650
Score = 33.9 bits (76), Expect = 0.78, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 6 VNVHPTKHEVHFLHEDTIIERVQSMLEKTL 35
VNVHPTKHEV F + + + +Q +E L
Sbjct: 297 VNVHPTKHEVRFREQGRVHDAIQKAVESVL 326
>sp|B5EGD4|MUTL_GEOBB DNA mismatch repair protein MutL OS=Geobacter bemidjiensis (strain
Bem / ATCC BAA-1014 / DSM 16622) GN=mutL PE=3 SV=1
Length = 647
Score = 33.9 bits (76), Expect = 0.78, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 6 VNVHPTKHEVHFLHEDTIIERVQSMLEKTL 35
VNVHPTKHEV F + + + +Q+ +E L
Sbjct: 297 VNVHPTKHEVRFREQGRVHDAIQNAVESVL 326
>sp|B1I8F2|MUTL_STRPI DNA mismatch repair protein MutL OS=Streptococcus pneumoniae
(strain Hungary19A-6) GN=mutL PE=3 SV=1
Length = 649
Score = 33.9 bits (76), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 82/207 (39%), Gaps = 33/207 (15%)
Query: 6 VNVHPTKHEVHFLHEDTIIERV-----QSMLEKTL-------LGSNT--SRVFYTQTKLP 51
VNVHPTK EV E ++ V S+ E+TL L +T +R QT LP
Sbjct: 297 VNVHPTKQEVRISKEKELMTLVSEAIANSLKEQTLIPDALENLAKSTVRNREKVEQTILP 356
Query: 52 SFSTEPPTTKAKPSSTSSNTNNTTTTTTPAYKLVRTDASE-------QKLDRFLSKYIAD 104
K +PS S T Y++ TD + + LDR L+K
Sbjct: 357 LKENTLYYEKTEPSRPSQ-------TEVADYQVELTDEGQDLTLFAKETLDR-LTKPAKL 408
Query: 105 QRATSKQTSNKKYKRREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQH 164
A K + + E+ L+S+ ++E++++S F +L F G Q
Sbjct: 409 HFAERKPANYDQLDHPELDLASIDKAYDKLEREEASS----FPELEFFGQMHGTYLFAQG 464
Query: 165 ETKLYIVNVTYVLEELFYQLMLHDFGN 191
LYI++ E + Y+ GN
Sbjct: 465 RDGLYIIDQHAAQERVKYEEYRESIGN 491
>sp|Q3JYM6|MUTL_STRA1 DNA mismatch repair protein MutL OS=Streptococcus agalactiae
serotype Ia (strain ATCC 27591 / A909 / CDC SS700)
GN=mutL PE=3 SV=1
Length = 657
Score = 33.5 bits (75), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 75/199 (37%), Gaps = 25/199 (12%)
Query: 6 VNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSN-TSRVFYTQTKLPSFSTEPPTTKA-- 62
VNVHPTK EV E ++ + S + ++L + K + S + P +
Sbjct: 297 VNVHPTKQEVRISKERELMSLISSAISESLKQYDLIPDALENLAKTSTRSVDKPIQTSFS 356
Query: 63 --KPSSTSSNTNN-----TTTTTTPAYKLVRTDASEQKLDRFLSKYIADQRATSKQTSNK 115
+P T N T + P D S+ +D + + +Q AT Q+ N
Sbjct: 357 LKQPGLYYDRTKNDFFIDADTVSEPIANFTNLDKSDGSVDNDVKNSV-NQGAT--QSPNI 413
Query: 116 KYKRREIK-----------LSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQH 164
KY R+ LSS + L +EK S + F +L F G Q
Sbjct: 414 KYASRDQADSENFIHSQDYLSSKQSLNKLVEKLDSEE-SSTFPELEFFGQMHGTYLFAQG 472
Query: 165 ETKLYIVNVTYVLEELFYQ 183
LYI++ E + Y+
Sbjct: 473 NGGLYIIDQHAAQERVKYE 491
>sp|Q83P35|MUTL_SHIFL DNA mismatch repair protein MutL OS=Shigella flexneri GN=mutL PE=3
SV=4
Length = 615
Score = 33.5 bits (75), Expect = 0.99, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 15/75 (20%)
Query: 3 QPPVNVHPTKHEVHF----LHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEPP 58
Q VNVHP KHEV F L D I + V S+L++ L +T LP P
Sbjct: 298 QVDVNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQL-----------ETPLPLDDEPQP 346
Query: 59 TTKAKPSSTSSNTNN 73
+A P + + N
Sbjct: 347 APRAIPENRVAAGRN 361
>sp|B9DPC0|MUTL_STACT DNA mismatch repair protein MutL OS=Staphylococcus carnosus (strain
TM300) GN=mutL PE=3 SV=1
Length = 646
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 83/214 (38%), Gaps = 39/214 (18%)
Query: 6 VNVHPTKHEVHFLHEDT----IIERVQSML-EKTLLGSNTSRVFYTQTKLPSF------- 53
VNVHPTK EV E+ I++++Q +K L+ N Y + K+
Sbjct: 296 VNVHPTKLEVRLSKEEQLYQLIVQKIQEAFKDKILIPHNDENKLYKKNKVLDVFEQQKLD 355
Query: 54 -----STEPPTTKAKPSSTSSNTNNTTTT--TTPAYKLVRTDASEQKLDRFL-------- 98
++ PP K + N N+ T T +DAS Q R +
Sbjct: 356 FENRTASNPPAEKPDEETDRVNENSDTQAFQTNEQTSENGSDASYQAGQRAVLQDLEGNT 415
Query: 99 --SKYIADQRATSKQTSNKKYKRREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCAT 156
S+ + D ATS + ++ + + SS D+R E E K + + VG
Sbjct: 416 KNSEGLFDSEATSNEAASAEIE------SSEDDVR-ETEHAKPHRRVPY---MEVVGQVH 465
Query: 157 PCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFG 190
+ Q+ET +++++ E + Y+ G
Sbjct: 466 GTYIIAQNETGMFMIDQHAAQERIKYEYFRDKIG 499
>sp|A0KSR5|MUTL_SHESA DNA mismatch repair protein MutL OS=Shewanella sp. (strain ANA-3)
GN=mutL PE=3 SV=1
Length = 648
Score = 33.1 bits (74), Expect = 1.2, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 18/115 (15%)
Query: 3 QPPVNVHPTKHEVHFLH----EDTIIERVQSMLEKT-LLGSNTSRVFYTQTKLPSFSTEP 57
Q VNVHP KHEV F D I++ +QS LE+ LG R F EP
Sbjct: 295 QVDVNVHPAKHEVRFHQSRYVHDYILQALQSALEEAGELG--FERPF-----------EP 341
Query: 58 PTTKAKPSSTSSNTNNTTTTTTPAYKLVRTDASEQKLDRFLSKYIADQRATSKQT 112
+ + + ++ S T T T A++L ++ S+ + TS+++
Sbjct: 342 SSPQIRDEASLSETGAQTQTEHHAFELQSPESKTHSTWNEASRVDTSRAETSRES 396
>sp|A0LJK2|MUTL_SYNFM DNA mismatch repair protein MutL OS=Syntrophobacter fumaroxidans
(strain DSM 10017 / MPOB) GN=mutL PE=3 SV=1
Length = 670
Score = 32.7 bits (73), Expect = 1.5, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 6 VNVHPTKHEVHFLHEDTIIERVQSMLEKTL 35
VNVHPTK EV F H +I+ V+ + L
Sbjct: 297 VNVHPTKREVRFKHPGGVIDTVRGAIRDAL 326
>sp|A9BJB9|MUTL_PETMO DNA mismatch repair protein MutL OS=Petrotoga mobilis (strain DSM
10674 / SJ95) GN=mutL PE=3 SV=1
Length = 621
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 73/191 (38%), Gaps = 15/191 (7%)
Query: 2 DQPPVNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEPPTTK 61
D VNVHP K EV F E + V S+L+K + S +T + S T K
Sbjct: 291 DMVDVNVHPQKLEVKFTDE----QMVASLLKKVVRESLKKNTHFTMEFINSNDTIDLNKK 346
Query: 62 AKPSSTSS--NTNNTTTTTTPAYKLVRTDASEQKLDRFLSKYIADQRATSKQTSNKKYKR 119
S + N N ++ + TD E + F + I D + N YK
Sbjct: 347 TSSFSVQNLYNKNESSQKVDFSQNPTNTDYFENTDEFFNNSEIEDLQEEQNHFDN-SYKL 405
Query: 120 REIKLSSVRDLRGEIEKQKSSQLCEV-----FRKLSFVGCATPCMCLIQHETKLYIVNVT 174
E S D +G E QK+ V KL +G +++ E KL +V+
Sbjct: 406 YE--PSKTFDFKG-FEYQKNQTFTPVEKINSLEKLRILGIVAERYLVVEGEDKLLLVDFH 462
Query: 175 YVLEELFYQLM 185
E Y+++
Sbjct: 463 AAHERYIYEIL 473
>sp|P57886|MUTL_PASMU DNA mismatch repair protein MutL OS=Pasteurella multocida (strain
Pm70) GN=mutL PE=3 SV=1
Length = 617
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 6 VNVHPTKHEVHF----LHEDTIIERVQSML---EKTLLGSNTSRVFYTQTKLPSFSTEPP 58
VNVHPTKHEV F L D I + + + L + +L +N + V S E
Sbjct: 300 VNVHPTKHEVRFHQQRLVHDFICQGISNALHSEQASLYQTNEACVSANYQVEESAQHEYR 359
Query: 59 TTKAKPSSTSSNTNN-TTTTTTPAYKLVRTD 88
+ +KP+ ++ N ++TTTP+ L +T+
Sbjct: 360 PSYSKPNRAAAGQNIFDSSTTTPSTALFQTN 390
>sp|P40341|YTA12_YEAST Mitochondrial respiratory chain complexes assembly protein YTA12
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=YTA12 PE=1 SV=2
Length = 825
Score = 32.3 bits (72), Expect = 1.9, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Query: 42 RVFYTQTKLPSFSTEPPTTKAKPSSTSSNTNNTTTTTTPAYKLVRTDASEQKLDRFLSKY 101
R +Y T + S T+ + S N N K + TD + + + + KY
Sbjct: 21 RSYYGLTHIKSLHTQYRLLNRLQENKSGNKNEDNNEDAKLNKEIPTDEEVEAIRKQVEKY 80
Query: 102 IADQRATSKQTSNKKYKRREIKLSSVRDLRGEIEKQKSSQL 142
I +Q + +N K ++R+I S+R L + KQ+S+++
Sbjct: 81 I-EQTKNNTIPANWKEQKRKID-ESIRRLEDAVLKQESNRI 119
>sp|Q4G0P3|HYDIN_HUMAN Hydrocephalus-inducing protein homolog OS=Homo sapiens GN=HYDIN PE=1
SV=3
Length = 5121
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 39/89 (43%)
Query: 53 FSTEPPTTKAKPSSTSSNTNNTTTTTTPAYKLVRTDASEQKLDRFLSKYIADQRATSKQT 112
F T P + P S + T+ +P LV ++ E L+ F+ + D+ A ++
Sbjct: 1216 FVTLPKKPYSAPVSQMESIPATSEAASPPAILVTVESPEMDLNDFVKTVLVDEDARPEEK 1275
Query: 113 SNKKYKRREIKLSSVRDLRGEIEKQKSSQ 141
+K K + ++ EIE+ SSQ
Sbjct: 1276 ELRKTKASSVISDEIKISSTEIERIYSSQ 1304
>sp|A0B977|MUTL_METTP DNA mismatch repair protein MutL OS=Methanosaeta thermophila
(strain DSM 6194 / PT) GN=mutL PE=3 SV=1
Length = 557
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 6 VNVHPTKHEVHFLHEDTIIERVQ 28
VNVHP K EV FL ED + + V+
Sbjct: 298 VNVHPAKREVRFLREDEVYDAVR 320
>sp|B9DW70|MUTL_STRU0 DNA mismatch repair protein MutL OS=Streptococcus uberis (strain
ATCC BAA-854 / 0140J) GN=mutL PE=3 SV=1
Length = 660
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 77/204 (37%), Gaps = 32/204 (15%)
Query: 6 VNVHPTKHEVHFLHEDTIIERVQSMLEKTL------------LGSNTSR--VFYTQTKLP 51
VNVHPTK EV E ++ + + + ++L L +T R Y QTKLP
Sbjct: 297 VNVHPTKQEVRISKEKELMALISTAIAESLKSQDLIPDALENLAKSTVRSSTKYEQTKLP 356
Query: 52 SFST----EPPTTKAKPSSTSSNTNNTTTTTTPAYKLVRTDASEQKLDRFLSKYIADQRA 107
S+ +P T T + +P + L + K DR L DQ +
Sbjct: 357 LQSSKLYFDPQKNDFYIKEPQKTTELTVSEESPNFTLYTNIDNTVKEDRNL-----DQTS 411
Query: 108 TSKQTSNKKYKRREIKLSSVRDLRGEIEKQKSSQLC--------EVFRKLSFVGCATPCM 159
S + + E +LS +L KQK QL F +L F G
Sbjct: 412 ASASVKHASRSQDENQLSEHPNLDF-TNKQKMEQLISKLENEKTSTFPELDFFGQMHGTY 470
Query: 160 CLIQHETKLYIVNVTYVLEELFYQ 183
Q + L+I++ E + Y+
Sbjct: 471 LFAQGKDGLFIIDQHAAQERVKYE 494
>sp|B9K7B8|MUTL_THENN DNA mismatch repair protein MutL OS=Thermotoga neapolitana (strain
ATCC 49049 / DSM 4359 / NS-E) GN=mutL PE=3 SV=1
Length = 512
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 6 VNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEPPTT 60
+N+HP+K V FL E+ + E ++ +L K L V Y + + S P++
Sbjct: 293 INIHPSKIVVRFLEEEKVKEALEEVLTKNLARKWYRSVTYEEISSRALSVAEPSS 347
>sp|Q9Y4D8|HECD4_HUMAN Probable E3 ubiquitin-protein ligase HECTD4 OS=Homo sapiens GN=HECTD4
PE=1 SV=5
Length = 3996
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 107 ATSKQTSNKKYKRREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHET 166
AT ++T++ + EI L + + GEI ++S C+ R+L+ V + C+ L
Sbjct: 3573 ATVQRTAD--HAAPEITLDPLEIVGGEIRASENSYFCQAARQLASVPSSQLCVKLASGGD 3630
Query: 167 KLYIVNVTYVLEELFYQLMLHDFGNFGVFR 196
Y N+ + EE+ G G FR
Sbjct: 3631 PTYAFNIRFTGEEV--------HGTSGSFR 3652
>sp|B0K9L6|MUTL_THEP3 DNA mismatch repair protein MutL OS=Thermoanaerobacter
pseudethanolicus (strain ATCC 33223 / 39E) GN=mutL PE=3
SV=1
Length = 614
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%)
Query: 3 QPPVNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEPPTTKA 62
Q VN+HP+K E+ F E I E V ++ +L N + K F E PT A
Sbjct: 294 QIDVNIHPSKLEIKFSDERRIFEAVYKTIKDSLHKYNLIPEVKIEEKKNIFEIETPTISA 353
Query: 63 K 63
+
Sbjct: 354 E 354
>sp|B0K1A3|MUTL_THEPX DNA mismatch repair protein MutL OS=Thermoanaerobacter sp. (strain
X514) GN=mutL PE=3 SV=1
Length = 614
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%)
Query: 3 QPPVNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEPPTTKA 62
Q VN+HP+K E+ F E I E V ++ +L N + K F E PT A
Sbjct: 294 QIDVNIHPSKLEIKFSDERRIFEAVYKTIKDSLHKYNLIPEVKIEEKKNIFEIETPTISA 353
Query: 63 K 63
+
Sbjct: 354 E 354
>sp|Q4FNM9|IF2_PELUB Translation initiation factor IF-2 OS=Pelagibacter ubique (strain
HTCC1062) GN=infB PE=3 SV=1
Length = 734
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 14/91 (15%)
Query: 55 TEPPTTKAKP--SSTSSNTNNTTTTTTPAYKLVRTDASEQKLDRFLSKYIADQRATSK-- 110
T P + ++KP S+TSS T + PA + D ++KL A+QRAT +
Sbjct: 48 TRPASVRSKPAVSTTSSFPPRTASVPKPASPIT-NDYEKRKL--------AEQRATRRLK 98
Query: 111 -QTSNKKYKRREIKLSSVRDLRGEIEKQKSS 140
T + K+RE+KL+ R L EIE + S
Sbjct: 99 GDTGKPETKKRELKLTVSRALSDEIEARSRS 129
>sp|B5YE42|MUTL_DICT6 DNA mismatch repair protein MutL OS=Dictyoglomus thermophilum
(strain ATCC 35947 / DSM 3960 / H-6-12) GN=mutL PE=3
SV=1
Length = 575
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Query: 6 VNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEPPTTKAKPS 65
VNVHPTK EV F E + E V + + L + F+ K P TE K+
Sbjct: 296 VNVHPTKREVKFQKEKEVYEFVFRSIREAL--DEEEKKFFINMKAP--ETESKEYKSDSQ 351
Query: 66 STSSNTNNTTTTTTPAYKLVRTDASEQKLDRFLSKYI 102
T + YK SE+KL +S+YI
Sbjct: 352 ITLDREILSLPLEFKPYK------SEKKLSEAVSEYI 382
>sp|B0BVP7|MUTL_RICRO DNA mismatch repair protein MutL OS=Rickettsia rickettsii (strain
Iowa) GN=mutL PE=3 SV=1
Length = 610
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 6 VNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTE----PPTTK 61
VNVHP K EV F D V+++L + + + T++ T T + S + E P K
Sbjct: 300 VNVHPAKAEVRFHDPDY----VRNLLIEAIKNALTNKSHVTSTTIASDALELFKNPLVNK 355
Query: 62 AKPSSTSSNTNNTTTTTTP 80
P S N N+ + P
Sbjct: 356 QSPVSKVINVNSKSADYRP 374
>sp|A8GU58|MUTL_RICRS DNA mismatch repair protein MutL OS=Rickettsia rickettsii (strain
Sheila Smith) GN=mutL PE=3 SV=1
Length = 610
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 6 VNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTE----PPTTK 61
VNVHP K EV F D V+++L + + + T++ T T + S + E P K
Sbjct: 300 VNVHPAKAEVRFHDPDY----VRNLLIEAIKNALTNKSHVTSTTIASDALELFKNPLVNK 355
Query: 62 AKPSSTSSNTNNTTTTTTP 80
P S N N+ + P
Sbjct: 356 QSPVSKVINVNSKSADYRP 374
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.130 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,103,583
Number of Sequences: 539616
Number of extensions: 2473675
Number of successful extensions: 20205
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 281
Number of HSP's that attempted gapping in prelim test: 16970
Number of HSP's gapped (non-prelim): 2643
length of query: 202
length of database: 191,569,459
effective HSP length: 112
effective length of query: 90
effective length of database: 131,132,467
effective search space: 11801922030
effective search space used: 11801922030
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)