Query psy1958
Match_columns 202
No_of_seqs 195 out of 1103
Neff 6.5
Searched_HMMs 13730
Date Fri Aug 16 20:38:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1958.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1958hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1w36b3 c.52.1.24 (B:899-1174) 17.5 16 0.0012 28.3 0.6 20 150-172 163-182 (276)
2 d1n0ua4 d.58.11.1 (A:482-560) 17.0 1.1E+02 0.0081 18.6 5.1 34 167-201 46-79 (79)
3 d1mwza_ d.58.17.1 (A:) Metal i 14.8 25 0.0018 21.3 0.9 30 5-34 33-62 (73)
4 d1ee8a1 a.156.1.2 (A:122-210) 10.7 89 0.0065 19.6 2.8 32 7-38 51-84 (89)
5 d2hwja1 d.268.1.3 (A:4-204) Hy 10.5 1.4E+02 0.01 21.9 4.3 54 120-180 19-72 (201)
6 d1tdza1 a.156.1.2 (A:132-219) 10.0 1E+02 0.0076 19.3 3.0 33 6-38 50-84 (88)
7 d1kvja_ d.58.17.1 (A:) Menkes 9.9 56 0.0041 19.9 1.5 30 5-34 38-69 (79)
8 d2aw0a_ d.58.17.1 (A:) Menkes 7.8 86 0.0063 18.4 1.7 31 4-34 32-64 (72)
9 d2oc6a1 d.198.4.1 (A:1-123) Un 7.8 89 0.0065 20.6 1.9 28 10-37 85-113 (123)
10 d1k32a2 b.68.7.1 (A:39-319) Tr 7.3 1.2E+02 0.0085 21.0 2.6 20 154-173 241-260 (281)
No 1
>d1w36b3 c.52.1.24 (B:899-1174) Exodeoxyribonuclease V beta chain (RecB), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=17.50 E-value=16 Score=28.29 Aligned_cols=20 Identities=20% Similarity=0.542 Sum_probs=17.3
Q ss_pred EEEEEEcCcEEEEEeCCeEEEEe
Q psy1958 150 SFVGCATPCMCLIQHETKLYIVN 172 (202)
Q Consensus 150 ~~VG~v~~~y~LiQ~~~~LyLvd 172 (202)
-.-|.|| ++++++.++||||
T Consensus 163 ~l~G~ID---lvf~~~g~~~llD 182 (276)
T d1w36b3 163 MLKGFID---LVFRHEGRYYLLD 182 (276)
T ss_dssp EEEEEEE---EEEBSSSCBCCEE
T ss_pred eEEEEEE---EEEEECCEEEEEE
Confidence 3468888 8889999999999
No 2
>d1n0ua4 d.58.11.1 (A:482-560) Elongation factor 2 (eEF-2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=17.03 E-value=1.1e+02 Score=18.65 Aligned_cols=34 Identities=12% Similarity=0.143 Sum_probs=26.1
Q ss_pred eEEEEehHHHHHHHHHHHHHHHcCCCceeeecCCC
Q psy1958 167 KLYIVNVTYVLEELFYQLMLHDFGNFGVFRFEGSF 201 (202)
Q Consensus 167 ~LyLvd~~~~~ee~~YQ~~l~~fgn~~~~~l~~p~ 201 (202)
.+.|.=.+.+|-+++-+++.++|++. .+.+++|+
T Consensus 46 e~il~G~GelHLev~~~rL~~~f~~v-ev~~~~Pi 79 (79)
T d1n0ua4 46 EHIVAGTGELHLEICLQDLEHDHAGV-PLKISPPV 79 (79)
T ss_dssp CEEEEESSHHHHHHHHHHHHHTTSCS-CEEEECCC
T ss_pred CcEEecCCHHHHHHHHHHHHHHhCCc-eEEeCCCC
Confidence 35566689999999999999999543 45677775
No 3
>d1mwza_ d.58.17.1 (A:) Metal ion-transporting ATPase ZntA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=14.82 E-value=25 Score=21.35 Aligned_cols=30 Identities=23% Similarity=0.258 Sum_probs=19.8
Q ss_pred ccccCCCCCceeeccchHHHHHHHHHHHHH
Q psy1958 5 PVNVHPTKHEVHFLHEDTIIERVQSMLEKT 34 (202)
Q Consensus 5 DvNVHPtK~eV~f~~e~~i~~~i~~~~~~~ 34 (202)
+|+|....++|.+.......+.|.++|+++
T Consensus 33 ~v~v~~~~~~~~v~~~~~~~~~i~~~i~~~ 62 (73)
T d1mwza_ 33 QVQVLFATEKLVVDADNDIRAQVESALQKA 62 (73)
T ss_dssp EEEEETTTTEEEEEESSCCHHHHHHHHHHH
T ss_pred EEEEECCCCEEEEEECCCCHHHHHHHHHHc
Confidence 466677777777765555556676666655
No 4
>d1ee8a1 a.156.1.2 (A:122-210) DNA repair protein MutM (Fpg) {Thermus thermophilus [TaxId: 274]}
Probab=10.71 E-value=89 Score=19.63 Aligned_cols=32 Identities=9% Similarity=0.197 Sum_probs=22.2
Q ss_pred ccCCCCCceeeccc--hHHHHHHHHHHHHHhccC
Q psy1958 7 NVHPTKHEVHFLHE--DTIIERVQSMLEKTLLGS 38 (202)
Q Consensus 7 NVHPtK~eV~f~~e--~~i~~~i~~~~~~~l~~~ 38 (202)
.+||.+.--.+..+ +.+++.|...++.++...
T Consensus 51 ~I~P~~~~~~Ls~~e~~~L~~~i~~vl~~ai~~g 84 (89)
T d1ee8a1 51 RLSPFRPARSLTEEEARRLYRALREVLAEAVELG 84 (89)
T ss_dssp TCCSSSBGGGCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HcCccchhhhCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 58998887776655 566777777777776443
No 5
>d2hwja1 d.268.1.3 (A:4-204) Hypothetical protein Atu1540 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=10.47 E-value=1.4e+02 Score=21.89 Aligned_cols=54 Identities=9% Similarity=0.122 Sum_probs=32.4
Q ss_pred eeeecchHHHHHHHHHHhcChhHHHhccCcEEEEEEcCcEEEEEeCCeEEEEehHHHHHHH
Q psy1958 120 REIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLEEL 180 (202)
Q Consensus 120 ~~~~ltSv~~L~~ei~~~~~~~l~~~~~~~~~VG~v~~~y~LiQ~~~~LyLvd~~~~~ee~ 180 (202)
-++-+-.|...+........+.....+..+.+- +++=-+..|||+|+|-....+
T Consensus 19 ~~vG~~eV~~k~~~~~~~~~~~~~~yl~~k~vP-------vV~gp~g~lylvD~HH~~ral 72 (201)
T d2hwja1 19 IAVGFREVELKRKEWRETRKKDGDDFLGNHIVP-------VVAGPKDRAYLIDHHHLVLAL 72 (201)
T ss_dssp SEECHHHHHHHHHHHHTCC-----CCTTCBEEE-------EEECSTTCEEECSCHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHhcCHHHHHHHHhcCCcC-------EEECCCCCeEEEcchHHHHHH
Confidence 345556666777777666666666677766542 344457789999988776554
No 6
>d1tdza1 a.156.1.2 (A:132-219) DNA repair protein MutM (Fpg) {Lactococcus lactis [TaxId: 1358]}
Probab=9.95 E-value=1e+02 Score=19.26 Aligned_cols=33 Identities=15% Similarity=0.382 Sum_probs=22.9
Q ss_pred cccCCCCCceeeccc--hHHHHHHHHHHHHHhccC
Q psy1958 6 VNVHPTKHEVHFLHE--DTIIERVQSMLEKTLLGS 38 (202)
Q Consensus 6 vNVHPtK~eV~f~~e--~~i~~~i~~~~~~~l~~~ 38 (202)
-.+||.+.--.+... +.+++.|...++.++...
T Consensus 50 a~I~P~~~~~~Ls~~~~~~L~~~i~~vl~~ai~~g 84 (88)
T d1tdza1 50 AKIHPEKETNQLIESSIHLLHDSIIEILQKAIKLG 84 (88)
T ss_dssp TTCCTTCBGGGCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHcCccchhhHcCHHHHHHHHHHHHHHHHHHHHcC
Confidence 468998877676655 446777777777777544
No 7
>d1kvja_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.92 E-value=56 Score=19.86 Aligned_cols=30 Identities=7% Similarity=0.176 Sum_probs=20.5
Q ss_pred ccccCCCCCceeeccchH-H-HHHHHHHHHHH
Q psy1958 5 PVNVHPTKHEVHFLHEDT-I-IERVQSMLEKT 34 (202)
Q Consensus 5 DvNVHPtK~eV~f~~e~~-i-~~~i~~~~~~~ 34 (202)
+|+|.+.+++|.+.+... + .+.|.++|+++
T Consensus 38 ~v~v~~~~~~v~v~~d~~~~~~~~i~~~i~~~ 69 (79)
T d1kvja_ 38 HIKVSLEEKNATIIYDPKLQTPKTLQEAIDDM 69 (79)
T ss_dssp EEEEETTTTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCCCEEEEEECCCCCCHHHHHHHHHhc
Confidence 678889999999875433 2 45666666554
No 8
>d2aw0a_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.80 E-value=86 Score=18.42 Aligned_cols=31 Identities=10% Similarity=0.052 Sum_probs=19.5
Q ss_pred CccccCCCCCceeeccc-hHH-HHHHHHHHHHH
Q psy1958 4 PPVNVHPTKHEVHFLHE-DTI-IERVQSMLEKT 34 (202)
Q Consensus 4 vDvNVHPtK~eV~f~~e-~~i-~~~i~~~~~~~ 34 (202)
.+|+|.....+|++.+. ..+ .+.|.++|+++
T Consensus 32 ~~v~v~~~~~~v~v~~d~~~~~~~~i~~~i~~~ 64 (72)
T d2aw0a_ 32 KSIRVSLANSNGTVEYDPLLTSPETLRGAIEDM 64 (72)
T ss_dssp CCEEEETTTTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEEECCCCEEEEEECCCCCCHHHHHHHHHhh
Confidence 35777788888887643 323 56666666554
No 9
>d2oc6a1 d.198.4.1 (A:1-123) Uncharacterized protein YdhG {Bacillus subtilis [TaxId: 1423]}
Probab=7.77 E-value=89 Score=20.61 Aligned_cols=28 Identities=14% Similarity=0.242 Sum_probs=19.9
Q ss_pred CCCCceeeccchHH-HHHHHHHHHHHhcc
Q psy1958 10 PTKHEVHFLHEDTI-IERVQSMLEKTLLG 37 (202)
Q Consensus 10 PtK~eV~f~~e~~i-~~~i~~~~~~~l~~ 37 (202)
.+|+-|+|-..+.| .+.|.+.|+..|..
T Consensus 85 ~~K~~i~f~~~~~id~~Ll~~iI~~~i~e 113 (123)
T d2oc6a1 85 YTEQLIRIPWNGPVDYTLLEKMIEFNILD 113 (123)
T ss_dssp ECSSCEEEETTSCCCHHHHHHHHHHHHHH
T ss_pred ccceEEeccCCCCCCHHHHHHHHHHHHHH
Confidence 47888888877666 66666667666644
No 10
>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=7.31 E-value=1.2e+02 Score=20.98 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=17.3
Q ss_pred EEcCcEEEEEeCCeEEEEeh
Q psy1958 154 CATPCMCLIQHETKLYIVNV 173 (202)
Q Consensus 154 ~v~~~y~LiQ~~~~LyLvd~ 173 (202)
..|+..++++.+.+||++|.
T Consensus 241 SpDG~~I~f~~~~~l~~~d~ 260 (281)
T d1k32a2 241 NTDGRRILFSKGGSIYIFNP 260 (281)
T ss_dssp EESSSCEEEEETTEEEEECT
T ss_pred cCCCCEEEEEeCCEEEEEEC
Confidence 36788899999999999995
Done!