RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1958
         (202 letters)



>d1h7sa1 d.14.1.3 (A:232-365) DNA mismatch repair protein PMS2
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 134

 Score = 41.5 bits (97), Expect = 8e-06
 Identities = 6/30 (20%), Positives = 14/30 (46%)

Query: 6   VNVHPTKHEVHFLHEDTIIERVQSMLEKTL 35
           +NV P K ++    E  ++  +++ L    
Sbjct: 103 INVTPDKRQILLQEEKLLLAVLKTSLIGMF 132


>d1b63a1 d.14.1.3 (A:217-331) DNA mismatch repair protein MutL
           {Escherichia coli [TaxId: 562]}
          Length = 115

 Score = 39.9 bits (93), Expect = 3e-05
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 6   VNVHPTKHEVHFLHEDTIIERVQSMLEKTL 35
           VNVHP KHEV F     + + +   +   L
Sbjct: 85  VNVHPAKHEVRFHQSRLVHDFIYQGVLSVL 114


>d3bzka2 a.60.2.6 (A:564-636) Transcriptional accessory factor Tex
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 73

 Score = 25.1 bits (55), Expect = 2.2
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 81  AYKLVRTDASEQKLDRFLSKYIADQRATSKQTSNKKYKRREIKLSSVRDLRGEIEK 136
            Y LV+  A++ + D    + +    A  K+   KK+      L +V D+  E++K
Sbjct: 13  TYPLVQRIAADTERDI---RSLIGDSAFLKRLDPKKFTDETFGLPTVTDILKELDK 65


>d1gkma_ a.127.1.2 (A:) Histidine ammonia-lyase (HAL) {Pseudomonas
           putida [TaxId: 303]}
          Length = 509

 Score = 26.1 bits (57), Expect = 3.8
 Identities = 7/30 (23%), Positives = 14/30 (46%)

Query: 74  TTTTTTPAYKLVRTDASEQKLDRFLSKYIA 103
           T+     A + +R++ +    DRF +  I 
Sbjct: 457 TSAKLEKARQALRSEVAHYDRDRFFAPDIE 486


>d2al6a3 d.15.1.4 (A:31-130) Focal adhesion kinase 1 {Chicken
          (Gallus gallus) [TaxId: 9031]}
          Length = 100

 Score = 24.4 bits (53), Expect = 5.9
 Identities = 9/25 (36%), Positives = 12/25 (48%)

Query: 9  HPTKHEVHFLHEDTIIERVQSMLEK 33
          H    EVH+LH D  +  V+   E 
Sbjct: 59 HLQSEEVHWLHLDMGVSNVREKFEL 83


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.130    0.370 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 663,504
Number of extensions: 26275
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 8
Length of query: 202
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 121
Effective length of database: 1,295,466
Effective search space: 156751386
Effective search space used: 156751386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.5 bits)