BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1959
(296 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EYE|A Chain A, Crystal Structure Of A Probable Oxidoreductase From
Mycobacterium Abscessus Solved By Iodide Ion Sad
pdb|4EYE|B Chain B, Crystal Structure Of A Probable Oxidoreductase From
Mycobacterium Abscessus Solved By Iodide Ion Sad
Length = 342
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 81/199 (40%), Gaps = 16/199 (8%)
Query: 52 SDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVAXXXXXXXXXXXXXXVLQVGDKVLALNKE 111
D L+ G K P VPG E +G V ++ GD+V+A N
Sbjct: 63 PDYLMTKGEYQLKMEPPFVPGIETAGVVRSAPEGSG-----------IKPGDRVMAFN-- 109
Query: 112 LLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQXXXXXXXX 171
+ G++++ V +++ P ++ A +L +Y T ++R +L+ +
Sbjct: 110 FIGGYAERVAVAPSNILPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAA 169
Query: 172 XXXXXXXXDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGK 231
+A K AKVI V N T+ ++ GA L E+ V E +GG
Sbjct: 170 GGIGTAAIQIA-KGMGAKVIAVVNRTAATEFVKSVGADIVLPL--EEGWAKAVREATGGA 226
Query: 232 YANVVFEAVGGEDKTDLIR 250
++V + +GG D +R
Sbjct: 227 GVDMVVDPIGGPAFDDAVR 245
>pdb|4A27|A Chain A, Crystal Structure Of Human Synaptic Vesicle Membrane
Protein Vat-1 Homolog-Like Protein
pdb|4A27|B Chain B, Crystal Structure Of Human Synaptic Vesicle Membrane
Protein Vat-1 Homolog-Like Protein
Length = 349
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 12/113 (10%)
Query: 49 INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVAXXXXXXXXXXXXXXVLQVGDKVLAL 108
+N DL++ G+ D P PLVPGFE SG V + ++GD+V+A
Sbjct: 42 LNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALGDSVKG----------YEIGDRVMAF 91
Query: 109 NKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKE 161
+ +++ V+KIP+ M+F AA+ ++ TA ++ A L+E
Sbjct: 92 VN--YNAWAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANLRE 142
>pdb|1YB5|A Chain A, Crystal Structure Of Human Zeta-crystallin With Bound Nadp
pdb|1YB5|B Chain B, Crystal Structure Of Human Zeta-crystallin With Bound Nadp
Length = 351
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 80/190 (42%), Gaps = 13/190 (6%)
Query: 49 INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVAXXXXXXXXXXXXXXVLQVGDKVLAL 108
+N + + +G+ KP LP PG + +G + V + GD+V
Sbjct: 69 VNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNAS----------AFKKGDRVFT- 117
Query: 109 NKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQXXXXX 168
+ + G+++ + + V+K+PEK+ F+ A++ Y TA A +K +
Sbjct: 118 SSTISGGYAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVH 177
Query: 169 XXXXXXXXXXXDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVS 228
+A + Y K++G +E+ ++ Q GA E + ++K+ +
Sbjct: 178 GASGGVGLAACQIA-RAYGLKILGTAGTEEGQKIVLQNGAHEVFNH-REVNYIDKIKKYV 235
Query: 229 GGKYANVVFE 238
G K +++ E
Sbjct: 236 GEKGIDIIIE 245
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 1 VRIDIQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTI 40
V I + C +N + + +G+ KP LP PG + +G I
Sbjct: 60 VLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVI 99
>pdb|3JYL|A Chain A, Crystal Structures Of Pseudomonas Syringae Pv. Tomato
Dc3000 Quinone Oxidoreductase
pdb|3JYN|A Chain A, Crystal Structures Of Pseudomonas Syringae Pv. Tomato
Dc3000 Quinone Oxidoreductase Complexed With Nadph
Length = 325
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
Query: 99 LQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAK 158
+VGD+V A L +S+ V+ ++ K+ + ++FE AA+L T Q + + +
Sbjct: 79 FKVGDRV-AYGTGPLGAYSEVHVLPEANLVKLADSVSFEQAAALMLKGLTVQYLLRQTYQ 137
Query: 159 LKEKQXXXXXXXXXXXXXXXXDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEK 218
+K + A K AK+IG +S +K + GAW + +++E
Sbjct: 138 VKPGEIILFHAAAGGVGSLACQWA-KALGAKLIGTVSSPEKAAHAKALGAWETIDYSHE- 195
Query: 219 SLVNKVLEVSGGKYANVVFEAVG 241
+ +VLE++ GK VV++ VG
Sbjct: 196 DVAKRVLELTDGKKCPVVYDGVG 218
>pdb|1WLY|A Chain A, Crystal Structure Of 2-haloacrylate Reductase
Length = 333
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 90/220 (40%), Gaps = 22/220 (10%)
Query: 47 TRINSSDLLLYNGSGDAKPTL----PLVPGFEFSGTVIEVAXXXXXXXXXXXXXXVLQVG 102
T I + L Y+ +G P + P+V GFE + V EV VG
Sbjct: 36 TAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEEVGPGVTD----------FTVG 85
Query: 103 DKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFE--HAASLADSYSTAQIVFSRHAKLK 160
++V L +S + + + K+P+ + + H A L TAQ + + K+K
Sbjct: 86 ERVCTCLPPL-GAYSQERLYPAEKLIKVPKDLDLDDVHLAGLMLKGMTAQYLLHQTHKVK 144
Query: 161 EKQXXXXXXXXXXXXXXXXDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSL 220
A + A VIG ++E+K + R+ G + ++ +
Sbjct: 145 PGDYVLIHAAAGGMGHIMVPWARHL-GATVIGTVSTEEKAETARKLGCHHTINYSTQ-DF 202
Query: 221 VNKVLEVSGGKYANVVFEAVGG---EDKTDLIRQKGAWAA 257
V E++GGK +VV++++G + D +R +G AA
Sbjct: 203 AEVVREITGGKGVDVVYDSIGKDTLQKSLDCLRPRGMCAA 242
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 236 VFEAVGGEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEVFKAAM 295
V V E+K + R+ G + ++ + V E++GGK +VV++++G + + ++
Sbjct: 173 VIGTVSTEEKAETARKLGCHHTINYSTQ-DFAEVVREITGGKGVDVVYDSIGKDTLQKSL 231
>pdb|1QOR|A Chain A, Crystal Structure Of Escherichia Coli Quinone
Oxidoreductase Complexed With Nadph
pdb|1QOR|B Chain B, Crystal Structure Of Escherichia Coli Quinone
Oxidoreductase Complexed With Nadph
Length = 327
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 87/209 (41%), Gaps = 18/209 (8%)
Query: 65 PTLPLVPGFEFSGTVIEVAXXXXXXXXXXXXXXVLQVGDKVLALNKELLHGFSDQCVVHT 124
P+LP G E +G V +V ++ GD+V+ + L +S +
Sbjct: 55 PSLPSGLGTEAAGIVSKVGSGVKH----------IKAGDRVV-YAQSALGAYSSVHNIIA 103
Query: 125 NDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQXXXXXXXXXXXXXXXXDMATK 184
+ +P ++FE AA+ T + + ++K + A K
Sbjct: 104 DKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWA-K 162
Query: 185 IYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG-- 242
AK+IG + K + GAW + + E+ LV ++ E++GGK VV+++VG
Sbjct: 163 ALGAKLIGTVGTAQKAQSALKAGAWQVINY-REEDLVERLKEITGGKKVRVVYDSVGRDT 221
Query: 243 -EDKTDLIRQKGAWAALTFTNEKSLVNKV 270
E D ++++G ++F N V V
Sbjct: 222 WERSLDCLQRRGLM--VSFGNSSGAVTGV 248
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 240 VGGEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEVFKAAM 295
VG K + GAW + + E+ LV ++ E++GGK VV+++VG + ++ ++
Sbjct: 172 VGTAQKAQSALKAGAWQVINY-REEDLVERLKEITGGKKVRVVYDSVGRDTWERSL 226
>pdb|3GMS|A Chain A, Crystal Structure Of Putative Nadph:quinone Reductase From
Bacillus Thuringiensis
Length = 340
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 86/207 (41%), Gaps = 17/207 (8%)
Query: 44 KMMTR-INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVAXXXXXXXXXXXXXXVLQVG 102
+M+ R IN SDL+ G+ + LP +PG+E G V V +G
Sbjct: 38 RMLVRPINPSDLIPITGAYAHRIPLPNIPGYEGVGIVENVGAFVSREL----------IG 87
Query: 103 DKVLALNKELLHGFSDQCVVHTND-VFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKE 161
+VL L E G + V + D V IP+ + AA + + TA + + L+
Sbjct: 88 KRVLPLRGE---GTWQEYVKTSADFVVPIPDSIDDFTAAQMYINPLTAWVTCTETLNLQR 144
Query: 162 KQXXXXXXXXXXXXXXXXDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLV 221
+ ++I ++I V + T+ + + GA A + T+ L
Sbjct: 145 NDVLLVNACGSAIGHLFAQL-SQILNFRLIAVTRNNKHTEELLRLGA-AYVIDTSTAPLY 202
Query: 222 NKVLEVSGGKYANVVFEAVGGEDKTDL 248
V+E++ G A+ +++GG D +L
Sbjct: 203 ETVMELTNGIGADAAIDSIGGPDGNEL 229
>pdb|2J8Z|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase (
Tp53i3,Pig3)
Length = 354
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 90/236 (38%), Gaps = 25/236 (10%)
Query: 24 AKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVA 83
AKP+ PG G ++ K + +N +DL+ G D P + G E SG V E+
Sbjct: 43 AKPS----PG---EGEVLLKVAASALNRADLMQRQGQYDPPPGASNILGLEASGHVAELG 95
Query: 84 XXXXXXXXXXXXXXVLQVGDKVLALNKELLHGFSDQCV-VHTNDVFKIPEKMTFEHAASL 142
++GD +AL L G Q V V + IPE +T AA++
Sbjct: 96 PGCQGH---------WKIGDTAMAL---LPGGGQAQYVTVPEGLLMPIPEGLTLTQAAAI 143
Query: 143 ADSYSTAQIVFSRHAKLKEKQXXXXXXXXXXXXXXXXDMATKIYKAKVIGVCNSEDKTDL 202
+++ TA + ++ + T++ A + S+ K +
Sbjct: 144 PEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQL-TRMAGAIPLVTAGSQKKLQM 202
Query: 203 IRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG---EDKTDLIRQKGAW 255
+ GA A + E L+ + G N++ + +GG E + + G W
Sbjct: 203 AEKLGAAAGFNYKKE-DFSEATLKFTKGAGVNLILDCIGGSYWEKNVNCLALDGRW 257
>pdb|2OBY|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase
(Tp53i3,Pig3)
pdb|2OBY|B Chain B, Crystal Structure Of Human P53 Inducible Oxidoreductase
(Tp53i3,Pig3)
pdb|2OBY|C Chain C, Crystal Structure Of Human P53 Inducible Oxidoreductase
(Tp53i3,Pig3)
pdb|2OBY|D Chain D, Crystal Structure Of Human P53 Inducible Oxidoreductase
(Tp53i3,Pig3)
pdb|2OBY|E Chain E, Crystal Structure Of Human P53 Inducible Oxidoreductase
(Tp53i3,Pig3)
Length = 338
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 90/236 (38%), Gaps = 25/236 (10%)
Query: 24 AKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVA 83
AKP+ PG G ++ K + +N +DL+ G D P + G E SG V E+
Sbjct: 27 AKPS----PG---EGEVLLKVAASALNRADLMQRQGQYDPPPGASNILGLEASGHVAELG 79
Query: 84 XXXXXXXXXXXXXXVLQVGDKVLALNKELLHGFSDQCV-VHTNDVFKIPEKMTFEHAASL 142
++GD +AL L G Q V V + IPE +T AA++
Sbjct: 80 PGCQGH---------WKIGDTAMAL---LPGGGQAQYVTVPEGLLMPIPEGLTLTQAAAI 127
Query: 143 ADSYSTAQIVFSRHAKLKEKQXXXXXXXXXXXXXXXXDMATKIYKAKVIGVCNSEDKTDL 202
+++ TA + ++ + T++ A + S+ K +
Sbjct: 128 PEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQL-TRMAGAIPLVTAGSQKKLQM 186
Query: 203 IRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG---EDKTDLIRQKGAW 255
+ GA A + E L+ + G N++ + +GG E + + G W
Sbjct: 187 AEKLGAAAGFNYKKE-DFSEATLKFTKGAGVNLILDCIGGSYWEKNVNCLALDGRW 241
>pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|B Chain B, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|C Chain C, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|D Chain D, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
Length = 339
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 41/135 (30%)
Query: 39 TIIEKKMMTRINS-----SDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVAXXXXXXXXXX 93
TI +++ RI + +DL +G KP LPL+PG E G V EV
Sbjct: 22 TISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTH----- 76
Query: 94 XXXXVLQVGDKV---------------LALNKELLH-----------GFSDQCVVHTNDV 127
L+VGD+V L+ + L G+++ C + V
Sbjct: 77 -----LKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDGGYAEYCRAAADYV 131
Query: 128 FKIPEKMTFEHAASL 142
KIP+ ++FE AA +
Sbjct: 132 VKIPDNLSFEEAAPI 146
>pdb|3PII|A Chain A, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
pdb|3PII|C Chain C, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
pdb|3PII|B Chain B, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
pdb|3PII|D Chain D, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
Length = 339
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 41/135 (30%)
Query: 39 TIIEKKMMTRINS-----SDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVAXXXXXXXXXX 93
TI +++ RI + +DL +G KP LPL+PG E G V EV
Sbjct: 22 TISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTH----- 76
Query: 94 XXXXVLQVGDKV---------------LALNKELLH-----------GFSDQCVVHTNDV 127
L+VGD+V L+ + L G+++ C + V
Sbjct: 77 -----LKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDGGYAEYCRAAADYV 131
Query: 128 FKIPEKMTFEHAASL 142
KIP+ ++FE AA +
Sbjct: 132 VKIPDNLSFEEAAPI 146
>pdb|1O89|A Chain A, Crystal Structure Of E. Coli K-12 Yhdh
pdb|1O8C|A Chain A, Crystal Structure Of E. Coli K-12 Yhdh With Bound Nadph
pdb|1O8C|B Chain B, Crystal Structure Of E. Coli K-12 Yhdh With Bound Nadph
pdb|1O8C|C Chain C, Crystal Structure Of E. Coli K-12 Yhdh With Bound Nadph
pdb|1O8C|D Chain D, Crystal Structure Of E. Coli K-12 Yhdh With Bound Nadph
Length = 345
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 1 VRIDIQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTI 40
V +D+ +LN D L G G P++PG +F+GT+
Sbjct: 51 VTVDVHWSSLNYKDALAITGKGKIIRNFPMIPGIDFAGTV 90
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 47 TRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTV 79
+ +N D L G G P++PG +F+GTV
Sbjct: 58 SSLNYKDALAITGKGKIIRNFPMIPGIDFAGTV 90
>pdb|2VN8|A Chain A, Crystal Structure Of Human Reticulon 4 Interacting Protein
1 In Complex With Nadph
pdb|2VN8|B Chain B, Crystal Structure Of Human Reticulon 4 Interacting Protein
1 In Complex With Nadph
Length = 375
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 73/197 (37%), Gaps = 29/197 (14%)
Query: 30 LVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTL--------------PLVPGFEF 75
++P + +I K +N D+ + +G G + PL G +
Sbjct: 43 MMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPLTLGRDV 102
Query: 76 SGTVIEVAXXXXXXXXXXXXXXVLQVGDKVLALNKELLHG-FSDQCVVHTNDVFKIPEKM 134
SG V+E + GD+V A G S+ VV N+V P+ +
Sbjct: 103 SGVVMECGLDVKY----------FKPGDEVWAAVPPWKQGTLSEFVVVSGNEVSHKPKSL 152
Query: 135 TFEHAASLADSYSTAQIVFSRHAKLKEKQXXXXXXXXXXXXXXXXDMATKIYK---AKVI 191
T AASL TA ++ L +K A ++ K A V
Sbjct: 153 THTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDAHVT 212
Query: 192 GVCNSEDKTDLIRQKGA 208
VC S+D ++L+R+ GA
Sbjct: 213 AVC-SQDASELVRKLGA 228
>pdb|2C0C|A Chain A, Structure Of The Mgc45594 Gene Product
pdb|2C0C|B Chain B, Structure Of The Mgc45594 Gene Product
pdb|2X1H|A Chain A, Crystal Structure Of The Human Mgc45594 Gene Product In
Complex With Raloxifene
pdb|2X1H|B Chain B, Crystal Structure Of The Human Mgc45594 Gene Product In
Complex With Raloxifene
Length = 362
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 47/228 (20%), Positives = 82/228 (35%), Gaps = 20/228 (8%)
Query: 38 GTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVAXXXXXXXXXXXXXX 97
G ++ + +N+SD+ G D P GFE G V+ +
Sbjct: 54 GDLLVRNRFVGVNASDINYSAGRYDPSVKPPFDIGFEGIGEVVALGLSASARYTVGQAVA 113
Query: 98 VLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHA 157
+ G F++ VV + +P +L S +TA I
Sbjct: 114 YMAPGS------------FAEYTVVPASIATPVPS--VKPEYLTLLVSGTTAYISLKELG 159
Query: 158 KLKEKQXXXXXXXXXXXXXXXXDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNE 217
L E + ++ K K VIG C+S++K+ ++ G + + E
Sbjct: 160 GLSEGKKVLVTAAAGGTGQFAMQLSKKA-KCHVIGTCSSDEKSAFLKSLGCDRPINYKTE 218
Query: 218 KSLVNKVLEVSGGKYANVVFEAVGG---EDKTDLIRQKGAWAALTFTN 262
V VL+ + +VV+E+VGG + D + KG + F +
Sbjct: 219 P--VGTVLKQEYPEGVDVVYESVGGAMFDLAVDALATKGRLIVIGFIS 264
>pdb|3GQV|A Chain A, Lovastatin Polyketide Enoyl Reductase (Lovc) Mutant K54s
With Bound Nadp
Length = 371
Score = 34.7 bits (78), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 16/84 (19%)
Query: 72 GFEFSGTVIEVAXXXXXXXXXXXXXXVLQVGDKVLALNKELLH------GFSDQCVVHTN 125
G +++GTV+ V +QVGD+V E+ FS V
Sbjct: 67 GTDYAGTVVAVGSDVTH----------IQVGDRVYGAQNEMCPRTPDQGAFSQYTVTRGR 116
Query: 126 DVFKIPEKMTFEHAASLADSYSTA 149
KIP+ ++FE AA+L STA
Sbjct: 117 VWAKIPKGLSFEQAAALPAGISTA 140
>pdb|2X7H|A Chain A, Crystal Structure Of The Human Mgc45594 Gene Product In
Complex With Fenoprofen
pdb|2X7H|B Chain B, Crystal Structure Of The Human Mgc45594 Gene Product In
Complex With Fenoprofen
Length = 370
Score = 34.7 bits (78), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 47/228 (20%), Positives = 82/228 (35%), Gaps = 20/228 (8%)
Query: 38 GTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVAXXXXXXXXXXXXXX 97
G ++ + +N+SD+ G D P GFE G V+ +
Sbjct: 62 GDLLVRNRFVGVNASDINYSAGRYDPSVKPPFDIGFEGIGEVVALGLSASARYTVGQAVA 121
Query: 98 VLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHA 157
+ G F++ VV + +P +L S +TA I
Sbjct: 122 YMAPGS------------FAEYTVVPASIATPVPS--VKPEYLTLLVSGTTAYISLKELG 167
Query: 158 KLKEKQXXXXXXXXXXXXXXXXDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNE 217
L E + ++ K K VIG C+S++K+ ++ G + + E
Sbjct: 168 GLSEGKKVLVTAAAGGTGQFAMQLSKKA-KCHVIGTCSSDEKSAFLKSLGCDRPINYKTE 226
Query: 218 KSLVNKVLEVSGGKYANVVFEAVGG---EDKTDLIRQKGAWAALTFTN 262
V VL+ + +VV+E+VGG + D + KG + F +
Sbjct: 227 P--VGTVLKQEYPEGVDVVYESVGGAMFDLAVDALATKGRLIVIGFIS 272
>pdb|2WEK|A Chain A, Crystal Structure Of The Human Mgc45594 Gene Product In
Complex With Diclofenac
pdb|2WEK|B Chain B, Crystal Structure Of The Human Mgc45594 Gene Product In
Complex With Diclofenac
Length = 341
Score = 34.7 bits (78), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 47/228 (20%), Positives = 82/228 (35%), Gaps = 20/228 (8%)
Query: 38 GTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVAXXXXXXXXXXXXXX 97
G ++ + +N+SD+ G D P GFE G V+ +
Sbjct: 33 GDLLVRNRFVGVNASDINYSAGRYDPSVKPPFDIGFEGIGEVVALGLSASARYTVGQAVA 92
Query: 98 VLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHA 157
+ G F++ VV + +P +L S +TA I
Sbjct: 93 YMAPGS------------FAEYTVVPASIATPVPS--VKPEYLTLLVSGTTAYISLKELG 138
Query: 158 KLKEKQXXXXXXXXXXXXXXXXDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNE 217
L E + ++ K K VIG C+S++K+ ++ G + + E
Sbjct: 139 GLSEGKKVLVTAAAGGTGQFAMQLSKKA-KCHVIGTCSSDEKSAFLKSLGCDRPINYKTE 197
Query: 218 KSLVNKVLEVSGGKYANVVFEAVGG---EDKTDLIRQKGAWAALTFTN 262
V VL+ + +VV+E+VGG + D + KG + F +
Sbjct: 198 P--VGTVLKQEYPEGVDVVYESVGGAMFDLAVDALATKGRLIVIGFIS 243
>pdb|3B6Z|A Chain A, Lovastatin Polyketide Enoyl Reductase (Lovc) Complexed
With 2'- Phosphoadenosyl Isomer Of Crotonoyl-Coa
pdb|3B70|A Chain A, Crystal Structure Of Aspergillus Terreus Trans-Acting
Lovastatin Polyketide Enoyl Reductase (Lovc) With Bound
Nadp
Length = 371
Score = 34.7 bits (78), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 16/84 (19%)
Query: 72 GFEFSGTVIEVAXXXXXXXXXXXXXXVLQVGDKVLALNKELLH------GFSDQCVVHTN 125
G +++GTV+ V +QVGD+V E+ FS V
Sbjct: 67 GTDYAGTVVAVGSDVTH----------IQVGDRVYGAQNEMCPRTPDQGAFSQYTVTRGR 116
Query: 126 DVFKIPEKMTFEHAASLADSYSTA 149
KIP+ ++FE AA+L STA
Sbjct: 117 VWAKIPKGLSFEQAAALPAGISTA 140
>pdb|1XA0|A Chain A, Crystal Structure Of Mcsg Target Apc35536 From Bacillus
Stearothermophilus
pdb|1XA0|B Chain B, Crystal Structure Of Mcsg Target Apc35536 From Bacillus
Stearothermophilus
Length = 328
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 16/122 (13%)
Query: 38 GTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVAXXXXXXXXXXXXXX 97
G ++ + + +N D L G T P VPG + +G V+
Sbjct: 31 GDVLVRVHYSSVNYKDGLASIPDGKIVKTXPFVPGIDLAGVVVS------------SQHP 78
Query: 98 VLQVGDKVLALNKEL----LHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVF 153
+ GD+V+A E+ G+S+ +H + +P+ +T + A ++ + TA +
Sbjct: 79 RFREGDEVIATGYEIGVTHFGGYSEYARLHGEWLVPLPKGLTLKEAXAIGTAGFTAALSI 138
Query: 154 SR 155
R
Sbjct: 139 HR 140
>pdb|3NX4|A Chain A, Crystal Structure Of The Yhdh Oxidoreductase From
Salmonella Enterica In Complex With Nadp
pdb|3NX4|B Chain B, Crystal Structure Of The Yhdh Oxidoreductase From
Salmonella Enterica In Complex With Nadp
Length = 324
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 1 VRIDIQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGS 60
V +D+ +LN D L G G P +PG +F+GT + R ++ +L G
Sbjct: 30 VTVDVHWSSLNYKDALAITGKGKIIRHFPXIPGIDFAGT-VHASEDPRFHAGQEVLLTGW 88
Query: 61 G 61
G
Sbjct: 89 G 89
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 37 SGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTV 79
+G + + +N D L G G P +PG +F+GTV
Sbjct: 27 AGDVTVDVHWSSLNYKDALAITGKGKIIRHFPXIPGIDFAGTV 69
>pdb|2XAA|A Chain A, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm
44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol
pdb|2XAA|B Chain B, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm
44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol
pdb|2XAA|C Chain C, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm
44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol
pdb|2XAA|D Chain D, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm
44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol
pdb|3JV7|A Chain A, Structure Of Adh-A From Rhodococcus Ruber
pdb|3JV7|B Chain B, Structure Of Adh-A From Rhodococcus Ruber
pdb|3JV7|C Chain C, Structure Of Adh-A From Rhodococcus Ruber
pdb|3JV7|D Chain D, Structure Of Adh-A From Rhodococcus Ruber
Length = 345
Score = 34.3 bits (77), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 185 IYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGED 244
+ A+VI V +D+ L R+ GA AA+ + + + E++GG+ A VF+ VG +
Sbjct: 194 VSAARVIAVDLDDDRLALAREVGADAAVK--SGAGAADAIRELTGGQGATAVFDFVGAQS 251
Query: 245 KTDLIRQ 251
D +Q
Sbjct: 252 TIDTAQQ 258
>pdb|3TQH|A Chain A, Structure Of The Quinone Oxidoreductase From Coxiella
Burnetii
Length = 321
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 45/112 (40%), Gaps = 26/112 (23%)
Query: 49 INSSDLLLYNGSG----DAKPTLPLVPGFEFSGTVIEVAXXXXXXXXXXXXXXVLQVGDK 104
+N D NGSG K LP G++FSG VIE+ + +GDK
Sbjct: 45 LNPIDYKTRNGSGFVAKKLKNNLPSGLGYDFSGEVIELGSDVNN----------VNIGDK 94
Query: 105 VLALNKELLHGFSDQCVVHTNDVFKIP-------EKMTFEHAASLADSYSTA 149
V + GF D + V P EK++F AASL + TA
Sbjct: 95 VXGIA-----GFPDHPCCYAEYVCASPDTIIQKLEKLSFLQAASLPTAGLTA 141
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 3 IDIQCCALNSSDLLLYNGSG----DAKPTLPLVPGFEFSGTIIE 42
I + +LN D NGSG K LP G++FSG +IE
Sbjct: 38 IKVHAASLNPIDYKTRNGSGFVAKKLKNNLPSGLGYDFSGEVIE 81
>pdb|3HZZ|A Chain A, 2.4 Angstrom Crystal Structure Of Streptomyces Collinus
Crotonyl Coa CarboxylaseREDUCTASE
pdb|3HZZ|B Chain B, 2.4 Angstrom Crystal Structure Of Streptomyces Collinus
Crotonyl Coa CarboxylaseREDUCTASE
pdb|3HZZ|C Chain C, 2.4 Angstrom Crystal Structure Of Streptomyces Collinus
Crotonyl Coa CarboxylaseREDUCTASE
pdb|3HZZ|D Chain D, 2.4 Angstrom Crystal Structure Of Streptomyces Collinus
Crotonyl Coa CarboxylaseREDUCTASE
Length = 467
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 59/147 (40%), Gaps = 19/147 (12%)
Query: 115 GFSDQCVVHTNDVFKIPEKMTFEHAAS--LADSYSTAQIVFSRHAKLKEKQXXXXXXXXX 172
G ++ +V TN + P+ +T+E AA+ L +S + Q+V A +K+
Sbjct: 198 GLAEIALVKTNQLMPKPKHLTWEEAAAPGLVNSTAYRQLVSRNGAAMKQGDNVLIWGASG 257
Query: 173 XXXXXXXDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNE--------------- 217
A A I V +S K ++ R GA A + E
Sbjct: 258 GLGSYATQFALA-GGANPICVVSSPQKAEICRSMGAEAIIDRNAEGYKFWKDEHTQDPKE 316
Query: 218 -KSLVNKVLEVSGGKYANVVFEAVGGE 243
K ++ E++GG+ ++VFE G E
Sbjct: 317 WKRFGKRIRELTGGEDIDIVFEHPGRE 343
>pdb|3S1L|A Chain A, Crystal Structure Of Apo-Form Furx
pdb|3S1L|B Chain B, Crystal Structure Of Apo-Form Furx
pdb|3S1L|C Chain C, Crystal Structure Of Apo-Form Furx
pdb|3S1L|D Chain D, Crystal Structure Of Apo-Form Furx
pdb|3S2E|A Chain A, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|B Chain B, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|C Chain C, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|D Chain D, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|E Chain E, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|F Chain F, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|G Chain G, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|H Chain H, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2F|A Chain A, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|B Chain B, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|C Chain C, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|D Chain D, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|E Chain E, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|F Chain F, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|G Chain G, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|H Chain H, Crystal Structure Of Furx Nadh:furfural
pdb|3S2G|A Chain A, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|B Chain B, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|C Chain C, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|D Chain D, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|E Chain E, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|F Chain F, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|G Chain G, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|H Chain H, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2I|A Chain A, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|B Chain B, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|C Chain C, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|D Chain D, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|E Chain E, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|F Chain F, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|G Chain G, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|H Chain H, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
Length = 340
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 1 VRIDIQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTI 40
V++ I+ + +DL +G KPTLP +PG E G +
Sbjct: 30 VQVKIEASGVCHTDLHAADGDWPVKPTLPFIPGHEGVGYV 69
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 38 GTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVA 83
G + K + + +DL +G KPTLP +PG E G V V
Sbjct: 28 GQVQVKIEASGVCHTDLHAADGDWPVKPTLPFIPGHEGVGYVSAVG 73
>pdb|2HCY|A Chain A, Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevisiae
Fermentative Enzyme
pdb|2HCY|B Chain B, Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevisiae
Fermentative Enzyme
pdb|2HCY|C Chain C, Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevisiae
Fermentative Enzyme
pdb|2HCY|D Chain D, Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevisiae
Fermentative Enzyme
Length = 347
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 189 KVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVS-GGKYA--NVVFEAVGGEDK 245
+V+G+ E K +L R G + FT EK +V VL+ + GG + NV E
Sbjct: 196 RVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSVSEAAIEAS 255
Query: 246 TDLIRQKG 253
T +R G
Sbjct: 256 TRYVRANG 263
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 241 GGEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVV 282
GGE K +L R G + FT EK +V VL+ + G V+
Sbjct: 202 GGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVI 243
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 253 GAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEVF 291
G +L K++ +VL + GG+ +F ++GGEVF
Sbjct: 180 GGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVF 218
>pdb|3GOH|A Chain A, Crystal Structure Of Alcohol Dehydrogenase Superfamily
Protein (np_718042.1) From Shewanella Oneidensis At 1.55
A Resolution
Length = 315
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 70 VPGFEFSGTVIEVAXXXXXXXXXXXXXXVLQVGDKVLALNKELLHG-FSDQCVVHTNDVF 128
VPG + +G +++V +G +V HG F++ V++T+ V
Sbjct: 61 VPGVDGAGVIVKVGAKVDSKX----------LGRRVAYHTSLKRHGSFAEFTVLNTDRVX 110
Query: 129 KIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQ 163
+P+ ++FE AA+L TA F + K+++
Sbjct: 111 TLPDNLSFERAAALPCPLLTAWQAFEKIPLTKQRE 145
>pdb|2CF5|A Chain A, Crystal Structures Of The Arabidopsis Cinnamyl Alcohol
Dehydrogenases, Atcad5
pdb|2CF6|A Chain A, Crystal Structures Of The Arabidopsis Cinnamyl Alcohol
Dehydrogenases Atcad5
Length = 357
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 115 GFSDQCVVHTNDVFKIPEKMTFEHAASL 142
GF+ VVH V KIPE M E AA L
Sbjct: 134 GFAKATVVHQKFVVKIPEGMAVEQAAPL 161
>pdb|3KRT|A Chain A, Crystal Structure Of Putative Crotonyl Coa Reductase From
Streptomyces Coelicolor A3(2)
pdb|3KRT|B Chain B, Crystal Structure Of Putative Crotonyl Coa Reductase From
Streptomyces Coelicolor A3(2)
pdb|3KRT|C Chain C, Crystal Structure Of Putative Crotonyl Coa Reductase From
Streptomyces Coelicolor A3(2)
pdb|3KRT|D Chain D, Crystal Structure Of Putative Crotonyl Coa Reductase From
Streptomyces Coelicolor A3(2)
Length = 456
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 59/147 (40%), Gaps = 19/147 (12%)
Query: 115 GFSDQCVVHTNDVFKIPEKMTFEHAAS--LADSYSTAQIVFSRHAKLKEKQXXXXXXXXX 172
G ++ +V +N + P+ +++E AA+ L +S + Q+V A +K+
Sbjct: 180 GLAEIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASG 239
Query: 173 XXXXXXXDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNE--------------- 217
A A I V +S K ++ R GA A + E
Sbjct: 240 GLGSYATQFALA-GGANPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKE 298
Query: 218 -KSLVNKVLEVSGGKYANVVFEAVGGE 243
K ++ E++GG+ ++VFE G E
Sbjct: 299 WKRFGKRIRELTGGEDIDIVFEHPGRE 325
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 8/64 (12%)
Query: 99 LQVGDKVLALN----KELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIV-- 152
LQ+GDK+LA+N ++++H + + +T DV + K+ A L+DSY+ I
Sbjct: 203 LQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYL--KVAKPSNAYLSDSYAPPDITTS 260
Query: 153 FSRH 156
+S+H
Sbjct: 261 YSQH 264
>pdb|3RIO|A Chain A, Crystal Structure Of Glct Cat-Prdi
Length = 180
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 213 TFTNEKSLVNKVLEVSGGKYANVVFEAVG---GEDKTDLIRQKGAWAALTFTNEKS 265
+FT +K L N VL S KY+ VV G G+ + D+I KG +EK
Sbjct: 14 SFTVKKVLNNNVLIASHHKYSEVVLIGKGIGFGKKQDDVIEDKGYDKMFILKDEKE 69
>pdb|2BCF|A Chain A, Crystal Structure Of A Evolved Putative Penicillin-Binding
Protein Homolog, Rv2911, From Mycobacterium Tuberculosis
Length = 276
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 218 KSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGK 277
+ L++ +L VSG AN + +GG+D T + + A L T+ + L+ GG
Sbjct: 91 RQLLDGLLLVSGNDAANTLAHXLGGQDVT-VAKXNAKAATLGATSTHATTPSGLDGPGGS 149
Query: 278 YANVVFEAVGGEVFKAA 294
A+ + V +F+AA
Sbjct: 150 GASTAHDLV--VIFRAA 164
>pdb|1LLU|A Chain A, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|B Chain B, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|C Chain C, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|D Chain D, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|E Chain E, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|F Chain F, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|G Chain G, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|H Chain H, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
Length = 342
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 37 SGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVA 83
G ++ K + + +DL G KP LP +PG E G V V
Sbjct: 31 PGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIPGHEGVGYVAAVG 77
>pdb|1VJ0|A Chain A, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
pdb|1VJ0|B Chain B, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
pdb|1VJ0|C Chain C, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
pdb|1VJ0|D Chain D, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
Length = 380
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 34 FEFS----GTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEV 82
FE S G+I+ + + + SD+ ++ G D + LP++ G E +G V+EV
Sbjct: 35 FEISDIPRGSILVEILSAGVCGSDVHMFRGE-DPRVPLPIILGHEGAGRVVEV 86
>pdb|3QWA|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
pdb|3QWA|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
pdb|3QWB|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
Complexed With Nadph
pdb|3QWB|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
Complexed With Nadph
pdb|3QWB|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
Complexed With Nadph
pdb|3QWB|D Chain D, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
Complexed With Nadph
Length = 334
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 28/106 (26%)
Query: 211 ALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDK--TDLIRQKGAWA-ALTFTNEK--- 264
AL+FTNE V K G Y ++F A GG L++ KGA A+ T+EK
Sbjct: 136 ALSFTNEAYHVKK------GDYV-LLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKI 188
Query: 265 ---------------SLVNKVLEVSGGKYANVVFEAVGGEVFKAAM 295
++ +VL+ + GK + F++VG + F+ ++
Sbjct: 189 AKEYGAEYLINASKEDILRQVLKFTNGKGVDASFDSVGKDTFEISL 234
>pdb|1M7S|A Chain A, Crystal Structure Analysis Of Catalase Catf Of Pseudomonas
Syringae
pdb|1M7S|B Chain B, Crystal Structure Analysis Of Catalase Catf Of Pseudomonas
Syringae
pdb|1M7S|C Chain C, Crystal Structure Analysis Of Catalase Catf Of Pseudomonas
Syringae
pdb|1M7S|D Chain D, Crystal Structure Analysis Of Catalase Catf Of Pseudomonas
Syringae
Length = 484
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 32/70 (45%)
Query: 223 KVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVV 282
K+ K A ++ + ++KTDL+++ G A T T K+++ L Y V
Sbjct: 405 KITREQNFKQAGDLYRSYSAKEKTDLVQKFGESLADTLTESKNIMLSYLYKEDPNYGTRV 464
Query: 283 FEAVGGEVFK 292
E G++ K
Sbjct: 465 AEVAKGDLSK 474
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,750,529
Number of Sequences: 62578
Number of extensions: 279271
Number of successful extensions: 749
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 688
Number of HSP's gapped (non-prelim): 78
length of query: 296
length of database: 14,973,337
effective HSP length: 98
effective length of query: 198
effective length of database: 8,840,693
effective search space: 1750457214
effective search space used: 1750457214
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)