Query psy1959
Match_columns 296
No_of_seqs 132 out of 1728
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 20:39:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1959.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1959hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1064 AdhP Zn-dependent alco 100.0 8.3E-44 1.8E-48 318.5 22.5 241 11-277 2-285 (339)
2 COG0604 Qor NADPH:quinone redu 100.0 1.8E-41 3.9E-46 308.3 26.9 236 3-260 2-238 (326)
3 KOG0024|consensus 100.0 3.1E-41 6.8E-46 294.2 19.8 258 11-283 3-304 (354)
4 KOG1197|consensus 100.0 4.5E-38 9.8E-43 265.3 22.6 231 4-259 11-241 (336)
5 KOG0023|consensus 100.0 1E-37 2.2E-42 271.7 21.7 244 12-277 9-303 (360)
6 COG1062 AdhC Zn-dependent alco 100.0 1.2E-36 2.7E-41 267.6 20.9 245 12-277 2-310 (366)
7 cd08281 liver_ADH_like1 Zinc-d 100.0 8.9E-36 1.9E-40 276.5 25.9 233 25-279 26-318 (371)
8 cd08239 THR_DH_like L-threonin 100.0 1.2E-35 2.6E-40 272.0 25.2 244 13-277 1-286 (339)
9 TIGR03451 mycoS_dep_FDH mycoth 100.0 1.3E-35 2.7E-40 274.2 25.3 245 12-277 1-302 (358)
10 PLN02740 Alcohol dehydrogenase 100.0 3.6E-35 7.8E-40 273.4 25.9 248 12-278 10-326 (381)
11 TIGR02818 adh_III_F_hyde S-(hy 100.0 2.7E-34 5.9E-39 266.3 27.1 227 13-259 2-283 (368)
12 KOG0025|consensus 100.0 2.1E-34 4.7E-39 247.0 22.7 261 9-288 16-299 (354)
13 KOG0022|consensus 100.0 4.1E-35 8.8E-40 254.4 18.3 226 11-256 6-286 (375)
14 cd08300 alcohol_DH_class_III c 100.0 1.8E-33 3.9E-38 260.8 26.3 229 12-260 2-285 (368)
15 cd08291 ETR_like_1 2-enoyl thi 100.0 2.7E-33 5.9E-38 255.0 26.5 246 13-279 1-270 (324)
16 PLN02827 Alcohol dehydrogenase 100.0 2.2E-33 4.8E-38 261.1 26.3 245 11-278 11-321 (378)
17 PRK09880 L-idonate 5-dehydroge 100.0 1.4E-33 3E-38 259.1 24.4 239 12-277 4-290 (343)
18 cd08301 alcohol_DH_plants Plan 100.0 4E-33 8.8E-38 258.4 26.9 247 12-278 2-315 (369)
19 TIGR02819 fdhA_non_GSH formald 100.0 6.5E-33 1.4E-37 258.9 25.6 228 12-261 2-297 (393)
20 cd08292 ETR_like_2 2-enoyl thi 100.0 1.9E-32 4E-37 248.6 27.7 244 13-277 1-263 (324)
21 COG1063 Tdh Threonine dehydrog 100.0 1E-32 2.2E-37 253.7 24.8 243 13-277 1-294 (350)
22 PLN02586 probable cinnamyl alc 100.0 2E-32 4.4E-37 253.1 25.4 228 25-277 30-302 (360)
23 cd08277 liver_alcohol_DH_like 100.0 3.6E-32 7.8E-37 251.8 26.3 227 12-259 2-282 (365)
24 cd08233 butanediol_DH_like (2R 100.0 5.1E-32 1.1E-36 249.3 25.2 244 13-277 1-296 (351)
25 cd08237 ribitol-5-phosphate_DH 100.0 2.2E-32 4.8E-37 251.0 22.4 232 13-277 3-280 (341)
26 cd08295 double_bond_reductase_ 100.0 1.2E-31 2.6E-36 245.7 27.1 233 5-260 10-248 (338)
27 PLN02178 cinnamyl-alcohol dehy 100.0 8.2E-32 1.8E-36 250.2 25.7 229 25-278 24-298 (375)
28 TIGR03201 dearomat_had 6-hydro 100.0 7.9E-32 1.7E-36 248.0 25.1 233 25-277 16-296 (349)
29 cd08230 glucose_DH Glucose deh 100.0 6E-32 1.3E-36 249.4 23.9 238 13-277 1-299 (355)
30 cd08293 PTGR2 Prostaglandin re 100.0 1.4E-31 3E-36 245.5 25.5 214 25-261 28-252 (345)
31 PRK10309 galactitol-1-phosphat 100.0 2E-31 4.4E-36 244.9 26.3 241 13-277 1-287 (347)
32 TIGR02822 adh_fam_2 zinc-bindi 100.0 1.7E-31 3.7E-36 244.0 25.0 222 25-277 20-279 (329)
33 cd08231 MDR_TM0436_like Hypoth 100.0 3.2E-31 7E-36 244.8 26.5 245 14-277 2-306 (361)
34 PLN02514 cinnamyl-alcohol dehy 100.0 5E-31 1.1E-35 243.5 25.8 241 12-277 9-299 (357)
35 cd08238 sorbose_phosphate_red 100.0 4.4E-31 9.5E-36 248.2 25.8 248 12-277 2-315 (410)
36 TIGR02825 B4_12hDH leukotriene 100.0 1.2E-30 2.6E-35 237.7 25.9 224 3-260 6-234 (325)
37 TIGR01202 bchC 2-desacetyl-2-h 100.0 3.2E-31 7E-36 240.1 21.7 229 12-277 1-255 (308)
38 PTZ00354 alcohol dehydrogenase 100.0 2.3E-30 5E-35 235.5 27.4 229 12-260 1-237 (334)
39 cd08278 benzyl_alcohol_DH Benz 100.0 1.5E-30 3.3E-35 240.9 26.1 228 12-261 2-283 (365)
40 cd05284 arabinose_DH_like D-ar 100.0 2.9E-30 6.3E-35 236.1 27.1 245 13-277 1-289 (340)
41 PLN03154 putative allyl alcoho 100.0 3.1E-30 6.8E-35 237.4 27.4 224 30-277 41-288 (348)
42 TIGR02817 adh_fam_1 zinc-bindi 100.0 2.2E-30 4.8E-35 236.5 26.2 215 25-260 22-244 (336)
43 cd08296 CAD_like Cinnamyl alco 100.0 2.3E-30 4.9E-35 236.7 26.2 241 13-277 1-283 (333)
44 cd08274 MDR9 Medium chain dehy 100.0 4.1E-30 8.8E-35 236.0 27.0 243 13-277 1-298 (350)
45 cd08285 NADP_ADH NADP(H)-depen 100.0 3.7E-30 8E-35 236.9 26.7 227 13-260 1-263 (351)
46 cd05278 FDH_like Formaldehyde 100.0 4.5E-30 9.7E-35 235.4 26.5 227 13-260 1-264 (347)
47 cd08290 ETR 2-enoyl thioester 100.0 3.7E-30 8E-35 235.5 25.8 228 13-260 1-248 (341)
48 cd08294 leukotriene_B4_DH_like 100.0 6.4E-30 1.4E-34 232.6 26.2 205 25-260 26-238 (329)
49 cd08299 alcohol_DH_class_I_II_ 100.0 5.3E-30 1.2E-34 238.0 25.6 227 13-259 8-288 (373)
50 PRK10083 putative oxidoreducta 100.0 9.9E-30 2.2E-34 232.6 26.0 225 13-260 1-256 (339)
51 cd08283 FDH_like_1 Glutathione 100.0 1.3E-29 2.8E-34 236.5 27.0 244 13-277 1-331 (386)
52 PRK10754 quinone oxidoreductas 100.0 1.5E-29 3.2E-34 230.3 26.1 216 25-260 21-236 (327)
53 cd08297 CAD3 Cinnamyl alcohol 100.0 2.2E-29 4.8E-34 230.6 27.2 229 13-260 1-262 (341)
54 cd08244 MDR_enoyl_red Possible 100.0 4.6E-29 1E-33 226.2 28.0 229 13-260 1-238 (324)
55 cd08286 FDH_like_ADH2 formalde 100.0 2E-29 4.3E-34 231.3 25.7 244 13-276 1-289 (345)
56 cd05280 MDR_yhdh_yhfp Yhdh and 100.0 6.4E-29 1.4E-33 225.4 28.5 243 13-277 1-268 (325)
57 cd08250 Mgc45594_like Mgc45594 100.0 2.8E-29 6.1E-34 228.5 26.1 225 12-260 1-234 (329)
58 cd08246 crotonyl_coA_red croto 100.0 3E-29 6.4E-34 234.4 26.9 235 25-276 35-339 (393)
59 cd08256 Zn_ADH2 Alcohol dehydr 100.0 4E-29 8.7E-34 229.9 27.1 226 13-259 1-270 (350)
60 cd08240 6_hydroxyhexanoate_dh_ 100.0 2.6E-29 5.6E-34 231.1 25.6 228 13-260 1-271 (350)
61 KOG1198|consensus 100.0 1.5E-29 3.3E-34 230.8 23.6 212 25-256 25-249 (347)
62 cd08263 Zn_ADH10 Alcohol dehyd 100.0 4.3E-29 9.4E-34 231.2 25.6 227 13-260 1-284 (367)
63 cd05282 ETR_like 2-enoyl thioe 100.0 7.6E-29 1.7E-33 224.7 26.5 216 25-260 19-234 (323)
64 cd08261 Zn_ADH7 Alcohol dehydr 100.0 8.7E-29 1.9E-33 226.3 26.9 225 13-260 1-255 (337)
65 cd08279 Zn_ADH_class_III Class 100.0 5.7E-29 1.2E-33 230.1 25.7 227 13-260 1-279 (363)
66 cd08289 MDR_yhfp_like Yhfp put 100.0 9.1E-29 2E-33 224.7 25.6 243 13-277 1-268 (326)
67 cd05279 Zn_ADH1 Liver alcohol 100.0 8.5E-29 1.8E-33 229.2 25.8 225 14-260 2-282 (365)
68 cd08258 Zn_ADH4 Alcohol dehydr 100.0 1.1E-28 2.4E-33 223.1 25.5 244 13-278 1-290 (306)
69 cd08235 iditol_2_DH_like L-idi 100.0 1.6E-28 3.5E-33 224.9 26.6 226 13-260 1-262 (343)
70 cd08243 quinone_oxidoreductase 100.0 1.8E-28 3.8E-33 221.5 26.5 211 26-260 21-235 (320)
71 cd08260 Zn_ADH6 Alcohol dehydr 100.0 2.1E-28 4.5E-33 224.5 27.1 228 13-260 1-261 (345)
72 cd08249 enoyl_reductase_like e 100.0 9.2E-29 2E-33 226.7 24.4 226 13-260 1-251 (339)
73 cd08276 MDR7 Medium chain dehy 100.0 2.8E-28 6.1E-33 221.8 27.5 247 13-277 1-284 (336)
74 cd08284 FDH_like_2 Glutathione 100.0 1.8E-28 4E-33 224.6 26.1 225 13-260 1-263 (344)
75 PRK09422 ethanol-active dehydr 100.0 1.8E-28 4E-33 224.1 25.4 226 13-260 1-258 (338)
76 cd08253 zeta_crystallin Zeta-c 100.0 3.8E-28 8.3E-33 219.0 26.8 218 25-260 20-240 (325)
77 cd08236 sugar_DH NAD(P)-depend 100.0 2.8E-28 6E-33 223.4 26.1 224 13-260 1-255 (343)
78 cd05276 p53_inducible_oxidored 100.0 3.7E-28 8.1E-33 218.6 26.4 245 13-277 1-263 (323)
79 cd08282 PFDH_like Pseudomonas 100.0 3.4E-28 7.3E-33 226.0 26.5 223 13-259 1-281 (375)
80 cd08251 polyketide_synthase po 100.0 5.6E-28 1.2E-32 216.2 26.0 215 27-260 2-216 (303)
81 cd08254 hydroxyacyl_CoA_DH 6-h 100.0 6.7E-28 1.5E-32 219.8 26.4 228 13-260 1-260 (338)
82 cd08252 AL_MDR Arginate lyase 100.0 1.1E-27 2.3E-32 218.6 27.7 244 13-277 1-270 (336)
83 cd08272 MDR6 Medium chain dehy 100.0 1.2E-27 2.7E-32 216.2 26.8 228 13-260 1-238 (326)
84 cd08287 FDH_like_ADH3 formalde 100.0 8E-28 1.7E-32 220.6 25.7 226 13-260 1-265 (345)
85 cd08259 Zn_ADH5 Alcohol dehydr 100.0 1.2E-27 2.6E-32 217.4 26.2 223 13-260 1-253 (332)
86 PRK05396 tdh L-threonine 3-deh 100.0 1.1E-27 2.4E-32 219.5 25.8 242 13-276 1-286 (341)
87 cd08262 Zn_ADH8 Alcohol dehydr 100.0 1E-27 2.2E-32 219.5 25.6 226 13-260 1-261 (341)
88 cd08248 RTN4I1 Human Reticulon 100.0 1.1E-27 2.4E-32 219.8 25.7 215 25-261 21-255 (350)
89 cd05283 CAD1 Cinnamyl alcohol 100.0 1.5E-27 3.2E-32 218.4 26.0 227 25-277 17-287 (337)
90 cd05188 MDR Medium chain reduc 100.0 9E-28 1.9E-32 211.5 23.4 224 39-277 1-257 (271)
91 TIGR02823 oxido_YhdH putative 100.0 1.9E-27 4E-32 216.0 26.1 230 25-277 19-266 (323)
92 PRK13771 putative alcohol dehy 100.0 8E-28 1.7E-32 219.5 23.8 222 13-260 1-252 (334)
93 TIGR01751 crot-CoA-red crotony 100.0 1.6E-27 3.5E-32 223.1 26.4 232 12-260 7-307 (398)
94 cd05285 sorbitol_DH Sorbitol d 100.0 1.3E-27 2.9E-32 219.2 25.1 215 25-260 15-262 (343)
95 TIGR02824 quinone_pig3 putativ 100.0 3E-27 6.6E-32 213.3 27.1 230 28-277 23-263 (325)
96 cd08266 Zn_ADH_like1 Alcohol d 100.0 3.9E-27 8.4E-32 214.3 27.4 230 13-260 1-262 (342)
97 cd08265 Zn_ADH3 Alcohol dehydr 100.0 3E-27 6.4E-32 220.4 26.7 230 12-260 28-304 (384)
98 cd08234 threonine_DH_like L-th 100.0 3E-27 6.6E-32 215.6 26.1 223 13-260 1-254 (334)
99 cd08271 MDR5 Medium chain dehy 100.0 4.8E-27 1E-31 212.5 26.8 228 13-260 1-236 (325)
100 cd05286 QOR2 Quinone oxidoredu 100.0 7.1E-27 1.5E-31 210.0 27.0 212 27-260 21-232 (320)
101 cd08247 AST1_like AST1 is a cy 100.0 6.7E-27 1.4E-31 215.2 27.1 212 31-260 27-256 (352)
102 cd08268 MDR2 Medium chain dehy 100.0 8.9E-27 1.9E-31 210.5 27.5 217 26-260 21-240 (328)
103 cd08270 MDR4 Medium chain dehy 100.0 5.1E-27 1.1E-31 211.2 25.8 201 25-260 19-219 (305)
104 cd08242 MDR_like Medium chain 100.0 3.5E-27 7.5E-32 214.1 24.7 227 13-276 1-268 (319)
105 cd08269 Zn_ADH9 Alcohol dehydr 100.0 4.7E-27 1E-31 211.9 24.8 211 25-260 12-226 (312)
106 PLN02702 L-idonate 5-dehydroge 100.0 7.2E-27 1.6E-31 216.2 26.4 245 13-277 18-309 (364)
107 cd08273 MDR8 Medium chain dehy 100.0 8.7E-27 1.9E-31 212.0 26.3 211 25-260 20-230 (331)
108 COG2130 Putative NADP-dependen 100.0 2.3E-27 5.1E-32 205.6 20.6 228 25-278 32-281 (340)
109 cd08264 Zn_ADH_like2 Alcohol d 100.0 8.1E-27 1.7E-31 212.1 25.0 207 25-260 19-250 (325)
110 cd08298 CAD2 Cinnamyl alcohol 100.0 1.5E-26 3.3E-31 210.7 26.1 218 13-261 1-254 (329)
111 cd08288 MDR_yhdh Yhdh putative 100.0 1.8E-26 3.8E-31 209.5 26.3 242 13-277 1-267 (324)
112 cd05281 TDH Threonine dehydrog 100.0 1.3E-26 2.9E-31 212.4 25.5 225 13-260 1-259 (341)
113 cd05195 enoyl_red enoyl reduct 100.0 2.3E-26 4.9E-31 203.8 24.6 204 38-260 1-206 (293)
114 TIGR00692 tdh L-threonine 3-de 100.0 2.3E-26 5.1E-31 210.7 25.0 215 25-261 16-259 (340)
115 cd08241 QOR1 Quinone oxidoredu 100.0 5.4E-26 1.2E-30 204.8 26.7 207 39-260 29-235 (323)
116 TIGR03366 HpnZ_proposed putati 100.0 7.1E-27 1.5E-31 208.8 20.7 191 70-277 1-244 (280)
117 cd05289 MDR_like_2 alcohol deh 99.9 9.5E-26 2.1E-30 202.1 25.3 226 13-261 1-236 (309)
118 cd08245 CAD Cinnamyl alcohol d 99.9 1.2E-25 2.7E-30 204.8 25.3 221 14-260 1-253 (330)
119 cd05288 PGDH Prostaglandin deh 99.9 1.7E-25 3.6E-30 203.6 25.5 210 25-260 25-241 (329)
120 cd08232 idonate-5-DH L-idonate 99.9 1.1E-25 2.3E-30 206.0 24.4 211 25-260 14-259 (339)
121 smart00829 PKS_ER Enoylreducta 99.9 1.8E-25 3.8E-30 198.0 23.2 199 42-260 2-202 (288)
122 cd08267 MDR1 Medium chain dehy 99.9 3.3E-25 7.2E-30 200.0 24.5 231 6-260 2-237 (319)
123 cd08275 MDR3 Medium chain dehy 99.9 1.3E-24 2.7E-29 197.7 27.0 213 26-260 20-233 (337)
124 KOG1196|consensus 99.9 5.6E-22 1.2E-26 171.7 22.6 249 3-277 9-283 (343)
125 cd08255 2-desacetyl-2-hydroxye 99.9 1.1E-20 2.3E-25 168.1 18.8 167 65-260 18-187 (277)
126 KOG1202|consensus 99.9 4.3E-21 9.3E-26 188.4 13.0 213 39-277 1446-1680(2376)
127 PF08240 ADH_N: Alcohol dehydr 99.7 3.7E-17 8.1E-22 125.5 9.6 83 38-130 2-109 (109)
128 PF00107 ADH_zinc_N: Zinc-bind 99.5 1.3E-13 2.9E-18 108.7 9.4 105 173-280 1-117 (130)
129 PRK09424 pntA NAD(P) transhydr 98.7 1.6E-07 3.4E-12 90.0 13.1 116 159-277 162-313 (509)
130 cd00401 AdoHcyase S-adenosyl-L 98.4 2.2E-06 4.7E-11 80.3 11.5 113 150-278 189-312 (413)
131 COG4221 Short-chain alcohol de 97.9 7.5E-05 1.6E-09 64.4 9.1 81 161-242 5-91 (246)
132 TIGR00561 pntA NAD(P) transhyd 97.7 0.00042 9.1E-09 66.6 11.6 97 160-259 162-280 (511)
133 PRK05476 S-adenosyl-L-homocyst 97.6 0.00094 2E-08 62.9 11.9 95 149-259 198-295 (425)
134 COG0300 DltE Short-chain dehyd 97.5 0.00071 1.5E-08 59.6 9.5 83 159-242 3-94 (265)
135 PRK05993 short chain dehydroge 97.4 0.0011 2.4E-08 58.8 9.5 81 161-242 3-86 (277)
136 TIGR00936 ahcY adenosylhomocys 97.3 0.003 6.5E-08 59.2 12.0 95 149-259 181-278 (406)
137 PRK05693 short chain dehydroge 97.3 0.0018 3.9E-08 57.3 9.9 79 163-242 2-82 (274)
138 PRK06182 short chain dehydroge 97.3 0.0018 3.9E-08 57.2 9.9 81 161-242 2-84 (273)
139 PRK00517 prmA ribosomal protei 97.3 0.0035 7.5E-08 55.1 11.4 141 96-263 64-213 (250)
140 cd05213 NAD_bind_Glutamyl_tRNA 97.3 0.00095 2.1E-08 60.6 7.9 108 125-245 139-251 (311)
141 PRK08324 short chain dehydroge 97.2 0.0017 3.6E-08 65.4 9.1 114 114-241 385-507 (681)
142 COG3967 DltE Short-chain dehyd 97.2 0.0015 3.2E-08 55.0 6.9 79 161-242 4-88 (245)
143 PRK06139 short chain dehydroge 97.2 0.003 6.5E-08 57.9 9.7 81 161-242 6-94 (330)
144 PRK08306 dipicolinate synthase 97.1 0.006 1.3E-07 55.0 11.3 86 161-259 151-237 (296)
145 PRK07904 short chain dehydroge 97.1 0.0049 1.1E-07 54.1 10.4 84 159-242 5-97 (253)
146 PRK08339 short chain dehydroge 97.1 0.0045 9.7E-08 54.6 9.9 81 161-242 7-95 (263)
147 PLN02494 adenosylhomocysteinas 97.1 0.008 1.7E-07 57.2 12.0 94 150-259 241-337 (477)
148 PRK05872 short chain dehydroge 97.1 0.004 8.7E-08 55.9 9.5 81 161-242 8-95 (296)
149 TIGR03325 BphB_TodD cis-2,3-di 97.0 0.004 8.6E-08 54.7 9.2 81 161-242 4-89 (262)
150 PRK07060 short chain dehydroge 97.0 0.0052 1.1E-07 53.1 9.8 78 161-242 8-87 (245)
151 PRK08017 oxidoreductase; Provi 97.0 0.0059 1.3E-07 53.2 9.8 79 163-242 3-84 (256)
152 PRK08177 short chain dehydroge 97.0 0.0061 1.3E-07 52.2 9.6 78 163-242 2-81 (225)
153 PRK07825 short chain dehydroge 97.0 0.0048 1E-07 54.5 9.2 81 161-242 4-88 (273)
154 PRK06200 2,3-dihydroxy-2,3-dih 97.0 0.0052 1.1E-07 53.9 9.3 81 161-242 5-90 (263)
155 PRK05786 fabG 3-ketoacyl-(acyl 97.0 0.015 3.2E-07 50.0 12.0 81 161-242 4-91 (238)
156 PRK07831 short chain dehydroge 96.9 0.0078 1.7E-07 52.8 9.9 83 159-242 14-107 (262)
157 PRK06057 short chain dehydroge 96.9 0.0083 1.8E-07 52.4 9.8 81 161-242 6-89 (255)
158 PRK12742 oxidoreductase; Provi 96.8 0.0098 2.1E-07 51.1 9.8 78 161-242 5-85 (237)
159 PRK09072 short chain dehydroge 96.8 0.0082 1.8E-07 52.7 9.4 81 161-242 4-90 (263)
160 PRK12771 putative glutamate sy 96.8 0.0034 7.3E-08 61.8 7.6 79 158-243 133-233 (564)
161 PRK07231 fabG 3-ketoacyl-(acyl 96.8 0.0062 1.4E-07 52.7 8.5 81 161-242 4-91 (251)
162 PRK07024 short chain dehydroge 96.8 0.0072 1.6E-07 52.9 8.9 80 162-242 2-88 (257)
163 PRK06180 short chain dehydroge 96.8 0.0066 1.4E-07 53.8 8.7 81 161-242 3-88 (277)
164 PRK06953 short chain dehydroge 96.8 0.012 2.6E-07 50.3 10.0 78 163-242 2-80 (222)
165 PRK06196 oxidoreductase; Provi 96.8 0.0084 1.8E-07 54.3 9.5 81 161-242 25-109 (315)
166 PLN02780 ketoreductase/ oxidor 96.8 0.0099 2.2E-07 54.2 9.9 81 161-242 52-142 (320)
167 PRK08267 short chain dehydroge 96.8 0.0096 2.1E-07 52.1 9.3 79 163-242 2-87 (260)
168 PF01488 Shikimate_DH: Shikima 96.8 0.0074 1.6E-07 47.8 7.8 72 161-243 11-86 (135)
169 PRK06949 short chain dehydroge 96.7 0.012 2.6E-07 51.3 9.6 81 161-242 8-96 (258)
170 PRK12828 short chain dehydroge 96.7 0.012 2.6E-07 50.4 9.5 81 161-242 6-92 (239)
171 PRK08217 fabG 3-ketoacyl-(acyl 96.7 0.011 2.5E-07 51.0 9.5 81 161-242 4-92 (253)
172 PRK06841 short chain dehydroge 96.7 0.01 2.2E-07 51.6 9.1 81 161-242 14-99 (255)
173 PLN03209 translocon at the inn 96.7 0.0089 1.9E-07 58.3 9.3 81 155-242 73-169 (576)
174 PRK08265 short chain dehydroge 96.7 0.0099 2.1E-07 52.2 8.7 81 161-242 5-90 (261)
175 PRK07062 short chain dehydroge 96.7 0.014 2.9E-07 51.3 9.6 81 161-242 7-97 (265)
176 PRK00045 hemA glutamyl-tRNA re 96.7 0.0038 8.3E-08 59.2 6.4 143 70-243 91-253 (423)
177 PRK12829 short chain dehydroge 96.7 0.0093 2E-07 52.1 8.3 83 159-242 8-96 (264)
178 PRK05866 short chain dehydroge 96.6 0.012 2.7E-07 52.8 9.2 81 161-242 39-127 (293)
179 PRK05867 short chain dehydroge 96.6 0.012 2.7E-07 51.2 9.0 81 161-242 8-96 (253)
180 TIGR01832 kduD 2-deoxy-D-gluco 96.6 0.013 2.9E-07 50.7 9.2 81 161-242 4-90 (248)
181 PF13460 NAD_binding_10: NADH( 96.6 0.017 3.8E-07 47.6 9.4 70 165-242 1-70 (183)
182 PRK06483 dihydromonapterin red 96.6 0.017 3.8E-07 49.7 9.7 80 162-242 2-84 (236)
183 PRK07523 gluconate 5-dehydroge 96.6 0.013 2.8E-07 51.1 8.9 81 161-242 9-97 (255)
184 PRK09291 short chain dehydroge 96.6 0.015 3.2E-07 50.7 9.2 75 162-242 2-83 (257)
185 PRK07577 short chain dehydroge 96.6 0.014 3.1E-07 50.0 9.0 76 161-242 2-78 (234)
186 PRK11873 arsM arsenite S-adeno 96.6 0.017 3.7E-07 51.2 9.7 97 156-262 72-182 (272)
187 PRK07814 short chain dehydroge 96.6 0.01 2.3E-07 52.1 8.2 81 161-242 9-97 (263)
188 PRK07326 short chain dehydroge 96.6 0.015 3.3E-07 49.9 9.1 81 161-242 5-92 (237)
189 PRK08862 short chain dehydroge 96.6 0.011 2.4E-07 51.0 8.1 80 161-241 4-92 (227)
190 PRK07478 short chain dehydroge 96.6 0.012 2.6E-07 51.3 8.4 81 161-242 5-93 (254)
191 PRK05854 short chain dehydroge 96.5 0.016 3.6E-07 52.5 9.4 81 161-242 13-103 (313)
192 KOG1205|consensus 96.5 0.015 3.2E-07 51.8 8.8 80 161-242 11-101 (282)
193 KOG1014|consensus 96.5 0.015 3.3E-07 51.9 8.7 81 160-242 47-136 (312)
194 PRK07774 short chain dehydroge 96.5 0.014 3.1E-07 50.5 8.5 81 161-242 5-93 (250)
195 PRK06500 short chain dehydroge 96.5 0.017 3.7E-07 50.0 8.9 81 161-242 5-90 (249)
196 PRK05717 oxidoreductase; Valid 96.5 0.015 3.2E-07 50.8 8.5 81 161-242 9-94 (255)
197 PRK06079 enoyl-(acyl carrier p 96.5 0.014 3.1E-07 50.9 8.5 81 161-242 6-93 (252)
198 PRK06194 hypothetical protein; 96.5 0.015 3.3E-07 51.6 8.8 81 161-242 5-93 (287)
199 PRK05653 fabG 3-ketoacyl-(acyl 96.5 0.024 5.1E-07 48.7 9.6 81 161-242 4-92 (246)
200 PRK07109 short chain dehydroge 96.5 0.019 4.2E-07 52.6 9.4 81 161-242 7-95 (334)
201 PRK04148 hypothetical protein; 96.5 0.025 5.5E-07 44.6 8.7 49 160-211 15-63 (134)
202 PRK08589 short chain dehydroge 96.5 0.017 3.7E-07 51.1 8.8 80 161-242 5-92 (272)
203 PRK07890 short chain dehydroge 96.5 0.017 3.7E-07 50.3 8.7 81 161-242 4-92 (258)
204 PRK12481 2-deoxy-D-gluconate 3 96.4 0.021 4.5E-07 49.8 9.2 81 161-242 7-93 (251)
205 PTZ00075 Adenosylhomocysteinas 96.4 0.074 1.6E-06 50.8 13.3 85 159-259 251-337 (476)
206 PRK06179 short chain dehydroge 96.4 0.01 2.2E-07 52.2 7.3 79 161-242 3-83 (270)
207 PRK12939 short chain dehydroge 96.4 0.02 4.4E-07 49.5 9.0 81 161-242 6-94 (250)
208 KOG0725|consensus 96.4 0.015 3.2E-07 51.8 8.2 81 161-242 7-99 (270)
209 PRK07454 short chain dehydroge 96.4 0.02 4.3E-07 49.4 8.8 82 160-242 4-93 (241)
210 PRK06463 fabG 3-ketoacyl-(acyl 96.4 0.025 5.3E-07 49.4 9.4 81 161-242 6-89 (255)
211 PRK08628 short chain dehydroge 96.4 0.019 4.1E-07 50.1 8.6 81 161-242 6-93 (258)
212 PRK06505 enoyl-(acyl carrier p 96.4 0.017 3.7E-07 51.2 8.4 81 161-242 6-95 (271)
213 PRK06138 short chain dehydroge 96.4 0.016 3.5E-07 50.2 8.1 81 161-242 4-91 (252)
214 PLN02253 xanthoxin dehydrogena 96.4 0.021 4.5E-07 50.6 9.0 81 161-242 17-104 (280)
215 PRK07677 short chain dehydroge 96.4 0.017 3.7E-07 50.3 8.2 80 162-242 1-88 (252)
216 TIGR00518 alaDH alanine dehydr 96.4 0.042 9.1E-07 51.2 11.1 90 161-259 166-263 (370)
217 PRK07035 short chain dehydroge 96.4 0.017 3.8E-07 50.1 8.2 81 161-242 7-95 (252)
218 PRK08213 gluconate 5-dehydroge 96.4 0.017 3.7E-07 50.5 8.2 81 161-242 11-99 (259)
219 PRK07576 short chain dehydroge 96.4 0.023 4.9E-07 50.0 9.0 80 161-241 8-95 (264)
220 PRK05876 short chain dehydroge 96.3 0.019 4E-07 51.1 8.4 81 161-242 5-93 (275)
221 PRK06125 short chain dehydroge 96.3 0.034 7.3E-07 48.6 9.9 78 161-242 6-91 (259)
222 PRK13394 3-hydroxybutyrate deh 96.3 0.024 5.2E-07 49.4 8.9 81 161-242 6-94 (262)
223 PRK05884 short chain dehydroge 96.3 0.028 6E-07 48.3 9.1 75 164-241 2-78 (223)
224 PRK07453 protochlorophyllide o 96.3 0.02 4.4E-07 52.0 8.6 80 161-241 5-92 (322)
225 PRK10538 malonic semialdehyde 96.3 0.027 5.9E-07 48.9 9.1 78 164-242 2-84 (248)
226 PRK07063 short chain dehydroge 96.3 0.026 5.6E-07 49.3 9.0 81 161-242 6-96 (260)
227 KOG1201|consensus 96.3 0.021 4.6E-07 50.8 8.2 78 161-242 37-124 (300)
228 PRK08264 short chain dehydroge 96.3 0.031 6.8E-07 48.0 9.4 75 161-242 5-83 (238)
229 PRK09186 flagellin modificatio 96.3 0.026 5.7E-07 49.0 8.9 80 161-241 3-92 (256)
230 PRK08340 glucose-1-dehydrogena 96.3 0.025 5.4E-07 49.5 8.8 78 164-242 2-86 (259)
231 PRK12823 benD 1,6-dihydroxycyc 96.3 0.041 8.9E-07 48.0 10.1 81 161-242 7-94 (260)
232 PRK06482 short chain dehydroge 96.3 0.03 6.5E-07 49.4 9.3 79 163-242 3-86 (276)
233 PRK07533 enoyl-(acyl carrier p 96.3 0.027 5.8E-07 49.4 8.8 81 161-242 9-98 (258)
234 PRK06398 aldose dehydrogenase; 96.3 0.017 3.8E-07 50.6 7.6 76 161-242 5-82 (258)
235 PRK06181 short chain dehydroge 96.2 0.023 4.9E-07 49.8 8.3 80 162-242 1-88 (263)
236 PRK12367 short chain dehydroge 96.2 0.034 7.5E-07 48.6 9.4 74 161-242 13-89 (245)
237 COG2518 Pcm Protein-L-isoaspar 96.2 0.085 1.8E-06 44.8 11.3 110 142-264 55-170 (209)
238 PRK06172 short chain dehydroge 96.2 0.025 5.4E-07 49.2 8.5 81 161-242 6-94 (253)
239 PRK06114 short chain dehydroge 96.2 0.033 7.2E-07 48.6 9.2 81 161-242 7-96 (254)
240 PRK07832 short chain dehydroge 96.2 0.036 7.8E-07 48.9 9.5 78 164-242 2-88 (272)
241 PF00106 adh_short: short chai 96.2 0.026 5.6E-07 45.6 7.7 79 163-242 1-90 (167)
242 PRK08415 enoyl-(acyl carrier p 96.2 0.039 8.4E-07 49.1 9.4 81 161-242 4-93 (274)
243 PRK06603 enoyl-(acyl carrier p 96.2 0.035 7.7E-07 48.7 9.1 81 161-242 7-96 (260)
244 PRK08643 acetoin reductase; Va 96.2 0.027 6E-07 49.0 8.3 80 162-242 2-89 (256)
245 PRK09242 tropinone reductase; 96.2 0.021 4.6E-07 49.8 7.6 81 161-242 8-98 (257)
246 PRK07856 short chain dehydroge 96.2 0.02 4.3E-07 49.8 7.4 77 161-242 5-85 (252)
247 PRK08263 short chain dehydroge 96.1 0.024 5.3E-07 50.1 8.1 80 162-242 3-87 (275)
248 PRK06198 short chain dehydroge 96.1 0.028 6E-07 49.0 8.3 81 161-242 5-94 (260)
249 COG1748 LYS9 Saccharopine dehy 96.1 0.031 6.7E-07 52.0 8.8 82 163-252 2-88 (389)
250 cd01078 NAD_bind_H4MPT_DH NADP 96.1 0.16 3.5E-06 42.6 12.6 76 161-243 27-108 (194)
251 PRK06197 short chain dehydroge 96.1 0.024 5.2E-07 51.0 8.0 81 161-242 15-105 (306)
252 PRK07791 short chain dehydroge 96.1 0.039 8.5E-07 49.3 9.3 82 160-242 4-102 (286)
253 PRK07074 short chain dehydroge 96.1 0.037 8.1E-07 48.2 9.1 80 162-242 2-87 (257)
254 PRK06101 short chain dehydroge 96.1 0.028 6E-07 48.7 8.1 76 163-241 2-80 (240)
255 PRK08251 short chain dehydroge 96.1 0.043 9.4E-07 47.4 9.1 80 162-242 2-91 (248)
256 PRK07067 sorbitol dehydrogenas 96.1 0.029 6.3E-07 48.9 8.0 81 161-242 5-90 (257)
257 PRK12384 sorbitol-6-phosphate 96.1 0.033 7.2E-07 48.6 8.4 80 162-242 2-91 (259)
258 PRK12826 3-ketoacyl-(acyl-carr 96.1 0.033 7.1E-07 48.1 8.3 81 161-242 5-93 (251)
259 PRK07806 short chain dehydroge 96.1 0.046 9.9E-07 47.3 9.2 81 161-242 5-94 (248)
260 PRK06523 short chain dehydroge 96.0 0.024 5.3E-07 49.5 7.4 78 161-242 8-87 (260)
261 PRK06720 hypothetical protein; 96.0 0.071 1.5E-06 43.9 9.7 81 161-242 15-103 (169)
262 PRK03369 murD UDP-N-acetylmura 96.0 0.045 9.6E-07 53.0 9.8 83 158-252 8-90 (488)
263 PRK08993 2-deoxy-D-gluconate 3 96.0 0.042 9.1E-07 47.9 8.9 81 161-242 9-95 (253)
264 CHL00194 ycf39 Ycf39; Provisio 96.0 0.035 7.6E-07 50.3 8.7 72 164-242 2-74 (317)
265 PRK08226 short chain dehydroge 96.0 0.037 8.1E-07 48.4 8.6 81 161-242 5-92 (263)
266 PRK08303 short chain dehydroge 96.0 0.043 9.3E-07 49.6 9.2 80 161-241 7-105 (305)
267 PRK08085 gluconate 5-dehydroge 96.0 0.038 8.3E-07 48.1 8.6 81 161-242 8-96 (254)
268 PRK08690 enoyl-(acyl carrier p 96.0 0.035 7.5E-07 48.8 8.3 81 161-242 5-94 (261)
269 PRK08703 short chain dehydroge 96.0 0.055 1.2E-06 46.6 9.5 80 161-242 5-97 (239)
270 PRK06124 gluconate 5-dehydroge 96.0 0.047 1E-06 47.5 9.1 81 161-242 10-98 (256)
271 PRK06484 short chain dehydroge 96.0 0.032 6.8E-07 54.1 8.7 81 161-242 268-353 (520)
272 PRK07984 enoyl-(acyl carrier p 96.0 0.045 9.7E-07 48.3 8.9 81 161-242 5-94 (262)
273 PRK08278 short chain dehydroge 96.0 0.039 8.5E-07 48.8 8.5 81 161-242 5-100 (273)
274 TIGR02853 spore_dpaA dipicolin 96.0 0.12 2.6E-06 46.4 11.6 80 161-252 150-230 (287)
275 PRK08277 D-mannonate oxidoredu 96.0 0.042 9.2E-07 48.5 8.7 81 161-242 9-97 (278)
276 KOG1209|consensus 96.0 0.073 1.6E-06 45.3 9.4 80 161-242 6-91 (289)
277 PRK07097 gluconate 5-dehydroge 96.0 0.043 9.3E-07 48.2 8.7 81 161-242 9-97 (265)
278 PRK07424 bifunctional sterol d 96.0 0.049 1.1E-06 51.3 9.4 75 161-242 177-255 (406)
279 PRK06914 short chain dehydroge 95.9 0.046 1E-06 48.3 8.9 80 161-242 2-91 (280)
280 PRK06484 short chain dehydroge 95.9 0.035 7.6E-07 53.8 8.7 81 161-242 4-89 (520)
281 PRK06935 2-deoxy-D-gluconate 3 95.9 0.043 9.2E-07 47.9 8.4 80 161-242 14-101 (258)
282 PRK12429 3-hydroxybutyrate deh 95.9 0.05 1.1E-06 47.2 8.7 81 161-242 3-91 (258)
283 PRK12743 oxidoreductase; Provi 95.9 0.056 1.2E-06 47.1 9.0 80 162-242 2-90 (256)
284 PRK07889 enoyl-(acyl carrier p 95.8 0.054 1.2E-06 47.4 8.8 81 161-242 6-95 (256)
285 PF03435 Saccharop_dh: Sacchar 95.8 0.078 1.7E-06 49.5 10.3 80 165-251 1-86 (386)
286 PRK05875 short chain dehydroge 95.8 0.042 9.1E-07 48.4 8.1 81 161-242 6-96 (276)
287 PLN00141 Tic62-NAD(P)-related 95.8 0.057 1.2E-06 47.1 8.8 77 161-242 16-95 (251)
288 TIGR02632 RhaD_aldol-ADH rhamn 95.8 0.053 1.1E-06 54.6 9.6 113 116-242 379-503 (676)
289 PRK08159 enoyl-(acyl carrier p 95.8 0.059 1.3E-06 47.8 9.0 83 159-242 7-98 (272)
290 PRK05557 fabG 3-ketoacyl-(acyl 95.8 0.084 1.8E-06 45.3 9.8 81 161-242 4-93 (248)
291 TIGR03206 benzo_BadH 2-hydroxy 95.8 0.056 1.2E-06 46.7 8.6 81 161-242 2-90 (250)
292 PRK07666 fabG 3-ketoacyl-(acyl 95.8 0.063 1.4E-06 46.2 8.9 81 161-242 6-94 (239)
293 PRK06128 oxidoreductase; Provi 95.8 0.064 1.4E-06 48.1 9.2 81 161-242 54-144 (300)
294 PRK08594 enoyl-(acyl carrier p 95.8 0.055 1.2E-06 47.5 8.5 81 161-242 6-97 (257)
295 PRK12936 3-ketoacyl-(acyl-carr 95.7 0.066 1.4E-06 46.0 8.8 81 161-242 5-90 (245)
296 PF11017 DUF2855: Protein of u 95.7 0.83 1.8E-05 41.4 15.8 145 95-252 45-220 (314)
297 PRK08261 fabG 3-ketoacyl-(acyl 95.7 0.072 1.6E-06 50.8 9.7 81 161-242 209-294 (450)
298 PF02670 DXP_reductoisom: 1-de 95.7 0.23 5.1E-06 38.9 10.7 94 165-259 1-117 (129)
299 PRK05650 short chain dehydroge 95.7 0.066 1.4E-06 47.1 8.7 78 164-242 2-87 (270)
300 TIGR01963 PHB_DH 3-hydroxybuty 95.7 0.053 1.1E-06 47.0 8.0 80 162-242 1-88 (255)
301 PRK12938 acetyacetyl-CoA reduc 95.7 0.047 1E-06 47.1 7.7 81 161-242 2-91 (246)
302 PRK08219 short chain dehydroge 95.7 0.074 1.6E-06 45.2 8.7 74 163-242 4-81 (227)
303 PRK07102 short chain dehydroge 95.6 0.076 1.6E-06 45.9 8.7 77 163-242 2-86 (243)
304 PRK07792 fabG 3-ketoacyl-(acyl 95.6 0.093 2E-06 47.3 9.6 81 161-242 11-99 (306)
305 PRK06113 7-alpha-hydroxysteroi 95.6 0.073 1.6E-06 46.4 8.6 81 161-242 10-98 (255)
306 PRK07370 enoyl-(acyl carrier p 95.6 0.061 1.3E-06 47.2 8.2 81 161-242 5-97 (258)
307 TIGR01035 hemA glutamyl-tRNA r 95.6 0.14 3E-06 48.6 10.9 141 70-242 89-250 (417)
308 PRK06171 sorbitol-6-phosphate 95.5 0.051 1.1E-06 47.6 7.4 78 161-242 8-87 (266)
309 PF05368 NmrA: NmrA-like famil 95.5 0.12 2.7E-06 44.3 9.6 72 165-242 1-74 (233)
310 PRK08063 enoyl-(acyl carrier p 95.5 0.085 1.8E-06 45.6 8.6 81 161-242 3-92 (250)
311 PRK08945 putative oxoacyl-(acy 95.5 0.093 2E-06 45.4 8.8 83 159-242 9-102 (247)
312 PRK08416 7-alpha-hydroxysteroi 95.5 0.094 2E-06 45.9 8.8 80 161-241 7-96 (260)
313 TIGR01289 LPOR light-dependent 95.4 0.084 1.8E-06 47.8 8.7 80 162-242 3-91 (314)
314 PRK12746 short chain dehydroge 95.4 0.063 1.4E-06 46.6 7.6 81 161-242 5-100 (254)
315 TIGR02622 CDP_4_6_dhtase CDP-g 95.4 0.091 2E-06 48.2 9.0 77 161-242 3-85 (349)
316 PRK09135 pteridine reductase; 95.4 0.089 1.9E-06 45.3 8.4 81 161-242 5-95 (249)
317 PRK06701 short chain dehydroge 95.3 0.11 2.3E-06 46.6 8.9 81 161-242 45-134 (290)
318 PRK12937 short chain dehydroge 95.3 0.13 2.7E-06 44.3 9.0 81 161-242 4-93 (245)
319 KOG1208|consensus 95.3 0.099 2.1E-06 47.5 8.5 79 161-242 34-124 (314)
320 PRK07775 short chain dehydroge 95.3 0.12 2.6E-06 45.7 9.0 81 161-242 9-97 (274)
321 PRK12745 3-ketoacyl-(acyl-carr 95.3 0.15 3.3E-06 44.2 9.5 79 163-242 3-90 (256)
322 PRK06940 short chain dehydroge 95.3 0.17 3.7E-06 44.8 9.9 78 162-242 2-86 (275)
323 PRK05599 hypothetical protein; 95.3 0.11 2.3E-06 45.2 8.5 77 164-242 2-87 (246)
324 TIGR00406 prmA ribosomal prote 95.2 0.078 1.7E-06 47.6 7.7 146 98-263 105-259 (288)
325 PRK00377 cbiT cobalt-precorrin 95.2 0.21 4.7E-06 42.0 10.0 101 155-262 34-144 (198)
326 PRK05565 fabG 3-ketoacyl-(acyl 95.2 0.094 2E-06 45.1 8.0 80 162-242 5-93 (247)
327 PLN02657 3,8-divinyl protochlo 95.2 0.097 2.1E-06 49.1 8.6 82 158-242 56-146 (390)
328 PRK08642 fabG 3-ketoacyl-(acyl 95.2 0.11 2.3E-06 45.0 8.3 80 161-241 4-90 (253)
329 PRK07201 short chain dehydroge 95.2 0.11 2.4E-06 51.9 9.4 80 162-242 371-458 (657)
330 PRK11705 cyclopropane fatty ac 95.1 0.19 4E-06 47.1 10.1 107 145-262 151-266 (383)
331 PRK12747 short chain dehydroge 95.1 0.19 4E-06 43.7 9.6 81 161-242 3-98 (252)
332 TIGR01829 AcAcCoA_reduct aceto 95.1 0.11 2.3E-06 44.7 7.9 79 163-242 1-88 (242)
333 PRK06997 enoyl-(acyl carrier p 95.1 0.095 2.1E-06 46.0 7.8 81 161-242 5-94 (260)
334 PF12847 Methyltransf_18: Meth 95.1 0.064 1.4E-06 40.3 5.8 93 161-262 1-110 (112)
335 PRK12935 acetoacetyl-CoA reduc 95.1 0.15 3.4E-06 43.9 9.0 81 161-242 5-94 (247)
336 COG2910 Putative NADH-flavin r 95.1 0.073 1.6E-06 44.2 6.3 71 164-242 2-72 (211)
337 PRK07985 oxidoreductase; Provi 95.1 0.17 3.6E-06 45.4 9.4 81 161-242 48-138 (294)
338 PRK08936 glucose-1-dehydrogena 95.1 0.19 4.2E-06 43.8 9.6 81 161-242 6-95 (261)
339 COG2227 UbiG 2-polyprenyl-3-me 95.0 0.18 4E-06 43.6 8.9 96 160-264 58-162 (243)
340 PRK05855 short chain dehydroge 95.0 0.11 2.3E-06 50.8 8.6 81 161-242 314-402 (582)
341 PRK08220 2,3-dihydroxybenzoate 95.0 0.13 2.8E-06 44.5 8.3 76 161-242 7-86 (252)
342 PRK06077 fabG 3-ketoacyl-(acyl 95.0 0.15 3.3E-06 44.0 8.8 81 161-242 5-94 (252)
343 PRK09134 short chain dehydroge 95.0 0.21 4.4E-06 43.6 9.6 81 161-242 8-97 (258)
344 TIGR00438 rrmJ cell division p 95.0 0.46 9.9E-06 39.6 11.2 99 155-261 26-144 (188)
345 TIGR02415 23BDH acetoin reduct 94.9 0.14 3.1E-06 44.3 8.3 79 163-242 1-87 (254)
346 PRK12825 fabG 3-ketoacyl-(acyl 94.8 0.17 3.6E-06 43.4 8.5 81 161-242 5-94 (249)
347 PRK07023 short chain dehydroge 94.8 0.14 3E-06 44.2 8.0 77 164-242 3-87 (243)
348 KOG1210|consensus 94.8 0.17 3.8E-06 45.4 8.5 86 156-242 27-122 (331)
349 PRK12744 short chain dehydroge 94.8 0.19 4.2E-06 43.7 8.9 81 161-242 7-99 (257)
350 PRK07069 short chain dehydroge 94.8 0.21 4.6E-06 43.0 9.1 77 165-242 2-89 (251)
351 PRK05447 1-deoxy-D-xylulose 5- 94.8 0.34 7.4E-06 45.1 10.6 97 163-261 2-120 (385)
352 PLN02653 GDP-mannose 4,6-dehyd 94.7 0.12 2.6E-06 47.2 7.7 37 161-198 5-41 (340)
353 PRK13943 protein-L-isoaspartat 94.7 0.55 1.2E-05 42.9 11.7 99 155-262 74-179 (322)
354 PRK12859 3-ketoacyl-(acyl-carr 94.7 0.24 5.3E-06 43.2 9.2 81 161-242 5-106 (256)
355 PLN02986 cinnamyl-alcohol dehy 94.6 0.17 3.7E-06 45.7 8.4 40 161-201 4-43 (322)
356 TIGR01472 gmd GDP-mannose 4,6- 94.6 0.18 4E-06 46.0 8.6 35 163-198 1-35 (343)
357 COG4122 Predicted O-methyltran 94.6 0.51 1.1E-05 40.6 10.5 104 155-263 53-166 (219)
358 TIGR00507 aroE shikimate 5-deh 94.6 0.35 7.6E-06 42.9 10.0 71 159-242 114-188 (270)
359 TIGR02685 pter_reduc_Leis pter 94.5 0.18 3.8E-06 44.3 8.0 38 163-201 2-40 (267)
360 PF02826 2-Hacid_dh_C: D-isome 94.5 0.25 5.4E-06 41.0 8.4 45 161-207 35-79 (178)
361 PRK06947 glucose-1-dehydrogena 94.5 0.24 5.2E-06 42.7 8.7 79 163-242 3-90 (248)
362 PF01118 Semialdhyde_dh: Semia 94.5 0.23 5E-06 38.3 7.7 87 164-261 1-94 (121)
363 TIGR03589 PseB UDP-N-acetylglu 94.5 0.25 5.4E-06 45.0 9.2 76 161-242 3-84 (324)
364 PRK07041 short chain dehydroge 94.5 0.24 5.2E-06 42.2 8.6 73 166-242 1-79 (230)
365 PF01262 AlaDh_PNT_C: Alanine 94.5 0.19 4.2E-06 41.2 7.6 51 161-213 19-69 (168)
366 PLN02989 cinnamyl-alcohol dehy 94.5 0.24 5.1E-06 44.8 8.9 75 161-242 4-87 (325)
367 PRK09730 putative NAD(P)-bindi 94.4 0.25 5.4E-06 42.4 8.6 79 163-242 2-89 (247)
368 PLN02896 cinnamyl-alcohol dehy 94.4 0.32 7E-06 44.6 9.7 78 160-242 8-89 (353)
369 PRK13940 glutamyl-tRNA reducta 94.4 0.44 9.6E-06 45.1 10.6 73 160-243 179-253 (414)
370 PRK12827 short chain dehydroge 94.3 0.29 6.3E-06 42.0 8.8 81 161-242 5-97 (249)
371 KOG4022|consensus 94.3 0.097 2.1E-06 42.6 5.2 73 162-242 3-82 (236)
372 TIGR03649 ergot_EASG ergot alk 94.3 0.13 2.8E-06 45.7 6.5 75 164-242 1-77 (285)
373 COG2242 CobL Precorrin-6B meth 94.2 0.54 1.2E-05 39.2 9.5 101 155-263 28-135 (187)
374 PRK06550 fabG 3-ketoacyl-(acyl 94.2 0.37 8E-06 41.2 9.1 73 161-241 4-76 (235)
375 COG1028 FabG Dehydrogenases wi 94.2 0.29 6.3E-06 42.3 8.5 81 161-242 4-96 (251)
376 TIGR01500 sepiapter_red sepiap 94.0 0.34 7.4E-06 42.2 8.7 40 164-203 2-44 (256)
377 PLN02427 UDP-apiose/xylose syn 94.0 0.35 7.6E-06 45.0 9.2 77 159-241 11-95 (386)
378 TIGR01830 3oxo_ACP_reduc 3-oxo 94.0 0.26 5.6E-06 42.1 7.8 77 165-242 1-86 (239)
379 PLN02214 cinnamoyl-CoA reducta 94.0 0.39 8.6E-06 44.0 9.4 78 161-242 9-91 (342)
380 KOG1200|consensus 94.0 0.49 1.1E-05 39.8 8.8 81 161-242 13-100 (256)
381 PF00670 AdoHcyase_NAD: S-aden 94.0 0.32 6.9E-06 39.7 7.6 85 159-259 20-106 (162)
382 KOG1610|consensus 93.9 0.94 2E-05 40.8 11.1 84 157-241 24-115 (322)
383 PRK12824 acetoacetyl-CoA reduc 93.9 0.37 8E-06 41.3 8.6 79 163-242 3-90 (245)
384 PF01370 Epimerase: NAD depend 93.9 0.2 4.2E-06 42.7 6.8 73 165-242 1-75 (236)
385 PRK12748 3-ketoacyl-(acyl-carr 93.9 0.39 8.4E-06 41.8 8.7 35 161-196 4-40 (256)
386 PRK12548 shikimate 5-dehydroge 93.8 0.55 1.2E-05 42.1 9.7 35 161-197 125-160 (289)
387 PRK06123 short chain dehydroge 93.8 0.31 6.7E-06 42.0 7.9 80 162-242 2-90 (248)
388 cd01075 NAD_bind_Leu_Phe_Val_D 93.8 1.9 4.1E-05 36.5 12.5 46 161-208 27-73 (200)
389 PLN02240 UDP-glucose 4-epimera 93.7 0.41 8.9E-06 43.7 9.0 35 161-196 4-38 (352)
390 KOG4169|consensus 93.7 0.18 3.8E-06 43.4 5.8 80 162-242 5-93 (261)
391 PRK08125 bifunctional UDP-gluc 93.7 0.34 7.3E-06 48.7 8.9 80 159-242 312-392 (660)
392 PF04321 RmlD_sub_bind: RmlD s 93.6 0.2 4.4E-06 44.8 6.6 60 164-242 2-61 (286)
393 PRK08261 fabG 3-ketoacyl-(acyl 93.6 0.15 3.3E-06 48.5 6.2 60 155-215 27-91 (450)
394 TIGR00715 precor6x_red precorr 93.5 0.3 6.4E-06 43.1 7.2 74 164-242 2-75 (256)
395 TIGR03466 HpnA hopanoid-associ 93.4 0.31 6.8E-06 43.8 7.6 72 164-242 2-74 (328)
396 TIGR01214 rmlD dTDP-4-dehydror 93.4 0.24 5.3E-06 43.8 6.8 60 164-242 1-60 (287)
397 KOG1199|consensus 93.4 0.66 1.4E-05 38.2 8.5 81 161-242 8-93 (260)
398 PF08659 KR: KR domain; Inter 93.3 0.65 1.4E-05 38.4 8.8 79 164-242 2-91 (181)
399 PLN00015 protochlorophyllide r 93.3 0.35 7.6E-06 43.6 7.7 76 166-242 1-85 (308)
400 PRK11908 NAD-dependent epimera 93.3 0.49 1.1E-05 43.3 8.8 75 164-241 3-77 (347)
401 PF03807 F420_oxidored: NADP o 93.3 0.76 1.6E-05 33.5 8.2 76 164-252 1-81 (96)
402 PRK07578 short chain dehydroge 93.3 0.5 1.1E-05 39.4 8.1 64 164-242 2-65 (199)
403 PLN02686 cinnamoyl-CoA reducta 93.3 0.52 1.1E-05 43.7 8.9 45 160-205 51-95 (367)
404 PRK06924 short chain dehydroge 93.2 0.69 1.5E-05 39.9 9.2 40 163-203 2-42 (251)
405 PLN02781 Probable caffeoyl-CoA 93.2 0.94 2E-05 39.3 9.9 104 155-262 62-177 (234)
406 PLN02662 cinnamyl-alcohol dehy 93.2 0.37 7.9E-06 43.4 7.7 39 161-200 3-41 (322)
407 PLN02589 caffeoyl-CoA O-methyl 93.2 1.1 2.4E-05 39.3 10.2 104 155-263 73-190 (247)
408 TIGR01831 fabG_rel 3-oxoacyl-( 93.2 0.67 1.5E-05 39.7 8.9 77 165-242 1-86 (239)
409 PRK13942 protein-L-isoaspartat 93.1 1.5 3.3E-05 37.3 11.0 100 155-264 70-177 (212)
410 TIGR01181 dTDP_gluc_dehyt dTDP 93.1 0.39 8.4E-06 42.8 7.6 74 164-242 1-83 (317)
411 TIGR02356 adenyl_thiF thiazole 93.0 1 2.2E-05 38.2 9.6 34 161-196 20-54 (202)
412 PLN00016 RNA-binding protein; 93.0 0.73 1.6E-05 42.9 9.5 85 161-252 51-152 (378)
413 PLN02696 1-deoxy-D-xylulose-5- 92.9 1.6 3.5E-05 41.5 11.5 95 163-259 58-176 (454)
414 PRK13656 trans-2-enoyl-CoA red 92.8 0.78 1.7E-05 42.9 9.1 82 160-243 39-142 (398)
415 PLN02650 dihydroflavonol-4-red 92.8 0.56 1.2E-05 43.0 8.3 41 161-202 4-44 (351)
416 PF01135 PCMT: Protein-L-isoas 92.8 0.34 7.3E-06 41.4 6.3 100 155-264 66-173 (209)
417 TIGR01318 gltD_gamma_fam gluta 92.7 0.48 1E-05 45.6 8.0 77 160-242 139-236 (467)
418 cd01080 NAD_bind_m-THF_DH_Cycl 92.7 1.3 2.8E-05 36.4 9.5 52 143-196 25-77 (168)
419 KOG1502|consensus 92.7 0.53 1.1E-05 42.8 7.7 77 161-242 5-88 (327)
420 PLN00198 anthocyanidin reducta 92.6 0.67 1.5E-05 42.2 8.6 39 161-200 8-46 (338)
421 PRK02472 murD UDP-N-acetylmura 92.6 0.73 1.6E-05 43.8 9.1 72 161-243 4-79 (447)
422 TIGR02813 omega_3_PfaA polyket 92.6 0.71 1.5E-05 53.1 10.1 38 159-196 1994-2031(2582)
423 PRK01438 murD UDP-N-acetylmura 92.5 0.9 1.9E-05 43.7 9.7 70 161-243 15-89 (480)
424 PRK13944 protein-L-isoaspartat 92.5 0.8 1.7E-05 38.8 8.3 100 155-264 66-174 (205)
425 PRK10675 UDP-galactose-4-epime 92.5 0.72 1.6E-05 41.8 8.6 74 164-242 2-83 (338)
426 cd01065 NAD_bind_Shikimate_DH 92.5 0.89 1.9E-05 36.2 8.2 73 160-243 17-92 (155)
427 PLN02476 O-methyltransferase 92.4 1.4 3E-05 39.4 9.9 106 153-263 110-228 (278)
428 PRK06719 precorrin-2 dehydroge 92.4 0.88 1.9E-05 37.0 8.1 79 161-252 12-90 (157)
429 TIGR01179 galE UDP-glucose-4-e 92.4 0.58 1.2E-05 41.9 7.8 74 164-242 1-80 (328)
430 TIGR02469 CbiT precorrin-6Y C5 92.4 2.5 5.4E-05 31.8 10.4 101 155-263 13-122 (124)
431 PF01596 Methyltransf_3: O-met 92.4 0.32 7E-06 41.4 5.7 104 156-263 40-155 (205)
432 PLN02583 cinnamoyl-CoA reducta 92.4 1.2 2.6E-05 39.9 9.8 36 161-197 5-40 (297)
433 PF13602 ADH_zinc_N_2: Zinc-bi 92.4 0.05 1.1E-06 42.0 0.6 44 206-259 1-47 (127)
434 PRK15181 Vi polysaccharide bio 92.3 0.75 1.6E-05 42.2 8.5 49 148-198 2-50 (348)
435 PF01113 DapB_N: Dihydrodipico 92.3 1.5 3.3E-05 33.9 9.1 32 164-195 2-33 (124)
436 PF02254 TrkA_N: TrkA-N domain 92.3 1.4 3E-05 33.3 8.7 73 165-243 1-73 (116)
437 KOG1207|consensus 92.2 0.77 1.7E-05 38.0 7.3 81 161-243 6-88 (245)
438 TIGR01470 cysG_Nterm siroheme 92.1 3.5 7.6E-05 35.0 11.8 81 161-252 8-89 (205)
439 COG0686 Ald Alanine dehydrogen 92.1 0.49 1.1E-05 42.6 6.5 89 162-259 168-264 (371)
440 PRK06718 precorrin-2 dehydroge 92.0 0.82 1.8E-05 38.8 7.8 81 161-252 9-90 (202)
441 PRK05579 bifunctional phosphop 92.0 0.78 1.7E-05 43.2 8.3 75 161-242 187-277 (399)
442 PRK06849 hypothetical protein; 92.0 1.1 2.3E-05 42.0 9.3 80 161-242 3-86 (389)
443 PLN02695 GDP-D-mannose-3',5'-e 92.0 0.76 1.6E-05 42.7 8.2 37 160-197 19-55 (370)
444 PRK00107 gidB 16S rRNA methylt 92.0 2 4.2E-05 36.0 9.9 96 159-263 43-145 (187)
445 PRK10217 dTDP-glucose 4,6-dehy 91.9 0.56 1.2E-05 42.9 7.2 75 163-242 2-84 (355)
446 PRK08309 short chain dehydroge 91.9 1.1 2.4E-05 37.2 8.2 81 164-246 2-89 (177)
447 smart00822 PKS_KR This enzymat 91.9 1.1 2.5E-05 35.6 8.3 78 164-242 2-91 (180)
448 TIGR00243 Dxr 1-deoxy-D-xylulo 91.7 3.2 7E-05 38.7 11.7 93 163-257 2-118 (389)
449 PRK07502 cyclohexadienyl dehyd 91.7 1.1 2.3E-05 40.5 8.7 44 163-208 7-52 (307)
450 PRK12809 putative oxidoreducta 91.7 0.76 1.6E-05 46.0 8.3 76 161-242 309-405 (639)
451 PF02719 Polysacc_synt_2: Poly 91.6 1.2 2.6E-05 40.0 8.5 77 165-242 1-87 (293)
452 TIGR02197 heptose_epim ADP-L-g 91.6 0.71 1.5E-05 41.3 7.3 73 165-241 1-75 (314)
453 TIGR01777 yfcH conserved hypot 91.5 0.21 4.6E-06 44.1 3.8 67 165-242 1-67 (292)
454 PRK00258 aroE shikimate 5-dehy 91.5 0.91 2E-05 40.5 7.8 73 160-242 121-195 (278)
455 PRK12549 shikimate 5-dehydroge 91.4 0.94 2E-05 40.6 7.9 42 161-204 126-168 (284)
456 COG0702 Predicted nucleoside-d 91.4 0.53 1.1E-05 41.0 6.2 70 164-241 2-72 (275)
457 COG0031 CysK Cysteine synthase 91.3 2.3 4.9E-05 38.3 10.0 59 155-215 55-116 (300)
458 COG0569 TrkA K+ transport syst 91.3 1.6 3.4E-05 37.7 8.9 84 164-252 2-86 (225)
459 COG1086 Predicted nucleoside-d 91.3 1.1 2.5E-05 43.5 8.5 79 161-241 249-334 (588)
460 COG2230 Cfa Cyclopropane fatty 91.3 2 4.2E-05 38.4 9.5 101 149-262 60-175 (283)
461 TIGR00080 pimt protein-L-isoas 91.2 3.8 8.3E-05 34.8 11.2 101 155-265 71-179 (215)
462 COG1179 Dinucleotide-utilizing 91.2 1.9 4E-05 37.6 9.0 33 161-195 29-62 (263)
463 PRK09987 dTDP-4-dehydrorhamnos 91.2 0.56 1.2E-05 42.1 6.3 63 164-242 2-64 (299)
464 PRK12475 thiamine/molybdopteri 91.2 1.6 3.5E-05 40.2 9.3 35 161-197 23-58 (338)
465 PRK12550 shikimate 5-dehydroge 91.1 1.1 2.4E-05 39.9 7.9 46 158-205 118-164 (272)
466 PLN02730 enoyl-[acyl-carrier-p 91.1 0.52 1.1E-05 42.6 6.0 38 161-200 8-47 (303)
467 COG0169 AroE Shikimate 5-dehyd 90.9 0.91 2E-05 40.6 7.2 45 160-206 124-169 (283)
468 PRK09620 hypothetical protein; 90.9 1.2 2.7E-05 38.5 7.8 82 161-244 2-99 (229)
469 KOG1252|consensus 90.9 1.4 3.1E-05 40.0 8.3 57 155-212 96-155 (362)
470 PRK12769 putative oxidoreducta 90.9 0.88 1.9E-05 45.7 7.9 77 160-242 325-422 (654)
471 PLN02572 UDP-sulfoquinovose sy 90.9 1.3 2.9E-05 42.2 8.7 35 160-195 45-79 (442)
472 TIGR02355 moeB molybdopterin s 90.7 2.1 4.5E-05 37.4 9.1 33 161-195 23-56 (240)
473 PRK14967 putative methyltransf 90.6 6.6 0.00014 33.6 12.1 73 156-239 31-108 (223)
474 PF13241 NAD_binding_7: Putati 90.5 1.2 2.5E-05 33.4 6.5 82 161-259 6-87 (103)
475 KOG1611|consensus 90.5 1.3 2.9E-05 38.1 7.4 80 163-242 4-94 (249)
476 PRK07688 thiamine/molybdopteri 90.5 2.1 4.5E-05 39.4 9.4 34 161-196 23-57 (339)
477 PRK04457 spermidine synthase; 90.3 6.2 0.00013 34.9 12.0 97 160-262 65-176 (262)
478 COG1090 Predicted nucleoside-d 90.3 0.67 1.5E-05 41.1 5.6 67 165-243 1-67 (297)
479 PRK03562 glutathione-regulated 90.3 1.8 3.8E-05 43.3 9.3 76 162-243 400-475 (621)
480 PRK14106 murD UDP-N-acetylmura 90.3 2.4 5.2E-05 40.3 10.0 71 161-243 4-79 (450)
481 cd05311 NAD_bind_2_malic_enz N 90.3 3.2 6.8E-05 35.9 9.8 80 160-252 23-118 (226)
482 PF07991 IlvN: Acetohydroxy ac 90.2 2.9 6.2E-05 34.2 8.8 97 161-273 3-106 (165)
483 PRK14027 quinate/shikimate deh 90.2 1.1 2.4E-05 40.1 7.1 43 161-205 126-169 (283)
484 PF00899 ThiF: ThiF family; I 90.0 1.2 2.6E-05 34.9 6.5 32 162-195 2-34 (135)
485 PRK08644 thiamine biosynthesis 90.0 2.2 4.9E-05 36.4 8.6 34 161-196 27-61 (212)
486 PRK14874 aspartate-semialdehyd 89.9 2 4.2E-05 39.5 8.6 79 163-252 2-83 (334)
487 PLN00203 glutamyl-tRNA reducta 89.8 2.9 6.2E-05 40.8 10.1 73 161-242 265-339 (519)
488 TIGR01809 Shik-DH-AROM shikima 89.7 0.79 1.7E-05 41.0 5.8 74 161-242 124-200 (282)
489 PRK11150 rfaD ADP-L-glycero-D- 89.7 0.9 2E-05 40.7 6.3 31 165-196 2-32 (308)
490 PRK08618 ornithine cyclodeamin 89.7 5 0.00011 36.6 11.2 87 160-259 125-217 (325)
491 PRK09310 aroDE bifunctional 3- 89.6 2.4 5.1E-05 41.0 9.3 69 161-242 331-400 (477)
492 COG0373 HemA Glutamyl-tRNA red 89.6 2.8 6E-05 39.6 9.4 82 150-243 166-249 (414)
493 PLN03013 cysteine synthase 89.5 3.2 6.9E-05 39.5 9.9 58 155-213 167-227 (429)
494 PRK10669 putative cation:proto 89.4 2 4.3E-05 42.3 8.9 75 163-243 418-492 (558)
495 PF13561 adh_short_C2: Enoyl-( 89.3 1 2.3E-05 38.7 6.2 70 171-242 5-83 (241)
496 PRK01710 murD UDP-N-acetylmura 89.3 2.7 5.9E-05 40.2 9.6 71 161-243 13-88 (458)
497 PRK09009 C factor cell-cell si 89.3 1.3 2.9E-05 37.7 6.8 74 164-242 2-77 (235)
498 cd00755 YgdL_like Family of ac 89.1 2.4 5.2E-05 36.8 8.1 33 162-196 11-44 (231)
499 COG1087 GalE UDP-glucose 4-epi 89.0 2.9 6.2E-05 37.7 8.6 77 163-244 1-79 (329)
500 PF03446 NAD_binding_2: NAD bi 89.0 2.4 5.1E-05 34.5 7.7 44 163-208 2-45 (163)
No 1
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=100.00 E-value=8.3e-44 Score=318.47 Aligned_cols=241 Identities=27% Similarity=0.357 Sum_probs=216.0
Q ss_pred CCcceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccC
Q psy1959 11 NSSDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADT 85 (296)
Q Consensus 11 ~~~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~ 85 (296)
-+||++++.+.+++ ++.|.|+|+ ||+|||.|+|+|++|++.++|.++.. .+|++||||.+|+|+++
T Consensus 2 ~~mkA~~~~~~~~pl~i~e~~~p~p~~~-----eVlI~v~~~GVChsDlH~~~G~~~~~-~~P~ipGHEivG~V~~v--- 72 (339)
T COG1064 2 MTMKAAVLKKFGQPLEIEEVPVPEPGPG-----EVLIKVEACGVCHTDLHVAKGDWPVP-KLPLIPGHEIVGTVVEV--- 72 (339)
T ss_pred cceEEEEEccCCCCceEEeccCCCCCCC-----eEEEEEEEEeecchhhhhhcCCCCCC-CCCccCCcceEEEEEEe---
Confidence 36899999998885 678889999 99999999999999999999999884 49999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCEEEE-ecC-------------------------CCCCcccceEeeeCCceEECCCCCCHHHH
Q psy1959 86 KSSSTEEDDEEDVLQVGDKVLA-LNK-------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHA 139 (296)
Q Consensus 86 ~~~~~~~g~~v~~~~~Gd~V~~-~~~-------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~a 139 (296)
|++|++|++||||.. +.. ..+|+|+||+++|+.+++++|++++++.|
T Consensus 73 -------G~~V~~~k~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~~gy~~~GGyaeyv~v~~~~~~~iP~~~d~~~a 145 (339)
T COG1064 73 -------GEGVTGLKVGDRVGVGWLVISCGECEYCRSGNENLCPNQKITGYTTDGGYAEYVVVPARYVVKIPEGLDLAEA 145 (339)
T ss_pred -------cCCCccCCCCCEEEecCccCCCCCCccccCcccccCCCccccceeecCcceeEEEEchHHeEECCCCCChhhh
Confidence 999999999999996 211 23799999999999999999999999999
Q ss_pred hhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchh
Q psy1959 140 ASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKS 219 (296)
Q Consensus 140 a~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 219 (296)
|.|.+++.|.|++| +.++++||++|+|.|+ |++|++++|+| +.+|++|++++++++|++.++++|++.+++.++ .+
T Consensus 146 ApllCaGiT~y~al-k~~~~~pG~~V~I~G~-GGlGh~avQ~A-ka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~-~~ 221 (339)
T COG1064 146 APLLCAGITTYRAL-KKANVKPGKWVAVVGA-GGLGHMAVQYA-KAMGAEVIAITRSEEKLELAKKLGADHVINSSD-SD 221 (339)
T ss_pred hhhhcCeeeEeeeh-hhcCCCCCCEEEEECC-cHHHHHHHHHH-HHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCC-ch
Confidence 99999999999999 6699999999999998 89999999999 778999999999999999999999999999875 66
Q ss_pred HHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEE------------eecccceeeeeEEeccc
Q psy1959 220 LVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTF------------TNEKSLVNKVLEVSGGK 277 (296)
Q Consensus 220 ~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~------------~~~~~~~~k~~~i~g~~ 277 (296)
..+.+.+. +|+++|+++..+++.++++| +++|++. ++...++.++++|.||.
T Consensus 222 ~~~~~~~~-----~d~ii~tv~~~~~~~~l~~l-~~~G~~v~vG~~~~~~~~~~~~~~li~~~~~i~GS~ 285 (339)
T COG1064 222 ALEAVKEI-----ADAIIDTVGPATLEPSLKAL-RRGGTLVLVGLPGGGPIPLLPAFLLILKEISIVGSL 285 (339)
T ss_pred hhHHhHhh-----CcEEEECCChhhHHHHHHHH-hcCCEEEEECCCCCcccCCCCHHHhhhcCeEEEEEe
Confidence 66666553 99999999977999999999 8887762 22345788999999987
No 2
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=100.00 E-value=1.8e-41 Score=308.34 Aligned_cols=236 Identities=29% Similarity=0.434 Sum_probs=210.2
Q ss_pred eeEeecccCCcceEEecCCCCCCCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEE
Q psy1959 3 IDIQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEV 82 (296)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v 82 (296)
..+.+..+|....+.+. ..|.|.|.++ ||||||.++++|+.|...++|......++|+++|.|++|+|+++
T Consensus 2 ka~~~~~~g~~~~l~~~----e~~~P~p~~g-----eVlVrV~a~gvN~~D~~~r~G~~~~~~~~P~i~G~d~aG~V~av 72 (326)
T COG0604 2 KAVVVEEFGGPEVLKVV----EVPEPEPGPG-----EVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAV 72 (326)
T ss_pred eEEEEeccCCCceeEEE----ecCCCCCCCC-----eEEEEEEEeecChHHHHhccCCCCCCCCCCCcccceeEEEEEEe
Confidence 34555555555555555 3788889999 99999999999999999999985444568999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCEEEEec-CCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCC
Q psy1959 83 ADTKSSSTEEDDEEDVLQVGDKVLALN-KELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKE 161 (296)
Q Consensus 83 ~~~~~~~~~~g~~v~~~~~Gd~V~~~~-~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~ 161 (296)
|++|+.|++||||+... ....|+|+||+.+|+..++++|+++|+++||++++.+.|||+++.+..++++
T Consensus 73 ----------G~~V~~~~~GdrV~~~~~~~~~G~~AEy~~v~a~~~~~~P~~ls~~eAAal~~~~~TA~~~l~~~~~l~~ 142 (326)
T COG0604 73 ----------GSGVTGFKVGDRVAALGGVGRDGGYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALFDRAGLKP 142 (326)
T ss_pred ----------CCCCCCcCCCCEEEEccCCCCCCcceeEEEecHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999985 1125999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCC
Q psy1959 162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVG 241 (296)
Q Consensus 162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g 241 (296)
|++|||+|++|++|++++|+| +.+|+.++++..+++|.++++++|++.++++++ .++.+.++++++++++|+++|++|
T Consensus 143 g~~VLV~gaaGgVG~~aiQlA-k~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~-~~~~~~v~~~t~g~gvDvv~D~vG 220 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLA-KALGATVVAVVSSSEKLELLKELGADHVINYRE-EDFVEQVRELTGGKGVDVVLDTVG 220 (326)
T ss_pred CCEEEEecCCchHHHHHHHHH-HHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCc-ccHHHHHHHHcCCCCceEEEECCC
Confidence 999999999999999999999 678877777777888888999999999999988 779999999999999999999999
Q ss_pred CccHHHHHHHhhccCceEE
Q psy1959 242 GEDKTDLIRQKGAWAALTF 260 (296)
Q Consensus 242 ~~~~~~~~~~lg~~~g~~~ 260 (296)
++.+..+++++ +++|++.
T Consensus 221 ~~~~~~~l~~l-~~~G~lv 238 (326)
T COG0604 221 GDTFAASLAAL-APGGRLV 238 (326)
T ss_pred HHHHHHHHHHh-ccCCEEE
Confidence 99999999999 7667663
No 3
>KOG0024|consensus
Probab=100.00 E-value=3.1e-41 Score=294.21 Aligned_cols=258 Identities=24% Similarity=0.282 Sum_probs=217.9
Q ss_pred CCcceEEecCCCCCCCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCC--CCCCCCcCCCceeEEEEEEccCCCC
Q psy1959 11 NSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDA--KPTLPLVPGFEFSGTVIEVADTKSS 88 (296)
Q Consensus 11 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~--~~~~p~~~G~e~~G~V~~v~~~~~~ 88 (296)
.+|++++|.++++..-...|.|.|+.++||+|++.++|||++|++++...... ..+.|+++|||.+|+|.++
T Consensus 3 ~~~~A~vl~g~~di~i~~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~ev------ 76 (354)
T KOG0024|consen 3 ADNLALVLRGKGDIRIEQRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEV------ 76 (354)
T ss_pred cccceeEEEccCceeEeeCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhh------
Confidence 47899999999999222445555666669999999999999999999754332 2356999999999999999
Q ss_pred CCCCCCCCCCCCCCCEEEEecC--------------------------CCCCcccceEeeeCCceEECCCCCCHHHHhhh
Q psy1959 89 STEEDDEEDVLQVGDKVLALNK--------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASL 142 (296)
Q Consensus 89 ~~~~g~~v~~~~~Gd~V~~~~~--------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l 142 (296)
|++|+++++||||+.-+. ..+|++++|++.+++.|+|+|+++|++++| |
T Consensus 77 ----G~~Vk~LkVGDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f~atpp~~G~la~y~~~~~dfc~KLPd~vs~eeGA-l 151 (354)
T KOG0024|consen 77 ----GDEVKHLKVGDRVAIEPGLPCRDCDFCKEGRYNLCPHMVFCATPPVDGTLAEYYVHPADFCYKLPDNVSFEEGA-L 151 (354)
T ss_pred ----cccccccccCCeEEecCCCccccchhhhCcccccCCccccccCCCcCCceEEEEEechHheeeCCCCCchhhcc-c
Confidence 999999999999995321 346999999999999999999999999998 7
Q ss_pred ccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCCcEEEEcCC---ch
Q psy1959 143 ADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALTFTN---EK 218 (296)
Q Consensus 143 ~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~~~~~~~~~---~~ 218 (296)
..+++++|+++ +++++++|++|||+|+ |++|+++...| +.+|+ +|++++..+.|++.++++|++.+..... ..
T Consensus 152 ~ePLsV~~HAc-r~~~vk~Gs~vLV~GA-GPIGl~t~l~A-ka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~ 228 (354)
T KOG0024|consen 152 IEPLSVGVHAC-RRAGVKKGSKVLVLGA-GPIGLLTGLVA-KAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQ 228 (354)
T ss_pred ccchhhhhhhh-hhcCcccCCeEEEECC-cHHHHHHHHHH-HHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHH
Confidence 78999999999 8999999999999998 99999999999 77898 9999999999999999999988766544 13
Q ss_pred hHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceE----------EeecccceeeeeEEeccc-ccceee
Q psy1959 219 SLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALT----------FTNEKSLVNKVLEVSGGK-YANVVF 283 (296)
Q Consensus 219 ~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~----------~~~~~~~~~k~~~i~g~~-~~~~~~ 283 (296)
++.+.+....+.+.+|+.|||+|. ..++.++..+ +.+|.. .|+......|++++.|++ |.+..|
T Consensus 229 ~~~~~v~~~~g~~~~d~~~dCsG~~~~~~aai~a~-r~gGt~vlvg~g~~~~~fpi~~v~~kE~~~~g~fry~~~~y 304 (354)
T KOG0024|consen 229 ELAELVEKALGKKQPDVTFDCSGAEVTIRAAIKAT-RSGGTVVLVGMGAEEIQFPIIDVALKEVDLRGSFRYCNGDY 304 (354)
T ss_pred HHHHHHHhhccccCCCeEEEccCchHHHHHHHHHh-ccCCEEEEeccCCCccccChhhhhhheeeeeeeeeeccccH
Confidence 444555555555669999999999 5899999999 877766 456678999999999997 777443
No 4
>KOG1197|consensus
Probab=100.00 E-value=4.5e-38 Score=265.30 Aligned_cols=231 Identities=27% Similarity=0.430 Sum_probs=218.1
Q ss_pred eEeecccCCcceEEecCCCCCCCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEc
Q psy1959 4 DIQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVA 83 (296)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~ 83 (296)
-|....+|+.+.+.|. ..|.|+|.|+ |++||-.|+|+|..|.+.++|-+. .++.|.+||-|.+|+|+++
T Consensus 11 ~i~v~e~Ggydvlk~e----d~pv~~papg-----el~iknka~GlNfid~y~RkGlY~-~~plPytpGmEaaGvVvAv- 79 (336)
T KOG1197|consen 11 CIVVTEFGGYDVLKLE----DRPVPPPAPG-----ELTIKNKACGLNFIDLYFRKGLYD-PAPLPYTPGMEAAGVVVAV- 79 (336)
T ss_pred EEEEeccCCcceEEEe----eecCCCCCCC-----ceEEeehhcCccHHHHHHhccccC-CCCCCcCCCcccceEEEEe-
Confidence 3567788888888888 4788899999 999999999999999999999997 4788999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCEEEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCc
Q psy1959 84 DTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQ 163 (296)
Q Consensus 84 ~~~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~ 163 (296)
|++|+++++||||+...+ .|.|+|+..+|...++++|+.+++..+|++...++|||..+++..++++|+
T Consensus 80 ---------G~gvtdrkvGDrVayl~~--~g~yaee~~vP~~kv~~vpe~i~~k~aaa~llq~lTAy~ll~e~y~vkpGh 148 (336)
T KOG1197|consen 80 ---------GEGVTDRKVGDRVAYLNP--FGAYAEEVTVPSVKVFKVPEAITLKEAAALLLQGLTAYMLLFEAYNVKPGH 148 (336)
T ss_pred ---------cCCccccccccEEEEecc--chhhheeccccceeeccCCcccCHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 999999999999999875 799999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCc
Q psy1959 164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE 243 (296)
Q Consensus 164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~ 243 (296)
+||++.+.|++|++++|++ +..|+.+|.+..+.+|.+.+++.|+.+.++++. +++.+++.+.++++|+|+++|.+|.+
T Consensus 149 tVlvhaAAGGVGlll~Ql~-ra~~a~tI~~asTaeK~~~akenG~~h~I~y~~-eD~v~~V~kiTngKGVd~vyDsvG~d 226 (336)
T KOG1197|consen 149 TVLVHAAAGGVGLLLCQLL-RAVGAHTIATASTAEKHEIAKENGAEHPIDYST-EDYVDEVKKITNGKGVDAVYDSVGKD 226 (336)
T ss_pred EEEEEeccccHHHHHHHHH-HhcCcEEEEEeccHHHHHHHHhcCCcceeeccc-hhHHHHHHhccCCCCceeeeccccch
Confidence 9999999999999999999 789999999999999999999999999999998 99999999999999999999999999
Q ss_pred cHHHHHHHhhccCceE
Q psy1959 244 DKTDLIRQKGAWAALT 259 (296)
Q Consensus 244 ~~~~~~~~lg~~~g~~ 259 (296)
++..++.+| ++.|.+
T Consensus 227 t~~~sl~~L-k~~G~m 241 (336)
T KOG1197|consen 227 TFAKSLAAL-KPMGKM 241 (336)
T ss_pred hhHHHHHHh-ccCceE
Confidence 999999999 766655
No 5
>KOG0023|consensus
Probab=100.00 E-value=1e-37 Score=271.68 Aligned_cols=244 Identities=21% Similarity=0.233 Sum_probs=209.5
Q ss_pred CcceEEecCCCCC-------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEcc
Q psy1959 12 SSDLLLYNGSGDA-------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVAD 84 (296)
Q Consensus 12 ~~~~~~~~~~~~~-------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~ 84 (296)
+..++.+..+... +++|+|.++ ||+|||+|||||++|++.+.|.++. ..+|+++|||.+|+|+++
T Consensus 9 k~~g~~~~~~~G~l~p~~~~~~~~~~g~~-----dv~vkI~~cGIChsDlH~~~gdwg~-s~~PlV~GHEiaG~Vvkv-- 80 (360)
T KOG0023|consen 9 KQFGWAARDPSGVLSPEVFSFPVREPGEN-----DVLVKIEYCGVCHSDLHAWKGDWGL-SKYPLVPGHEIAGVVVKV-- 80 (360)
T ss_pred hhEEEEEECCCCCCCcceeEcCCCCCCCC-----cEEEEEEEEeccchhHHHhhccCCc-ccCCccCCceeeEEEEEE--
Confidence 4456666665552 678888888 9999999999999999999999998 889999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEe-------------------cC--------------CCCCcccceEeeeCCceEECC
Q psy1959 85 TKSSSTEEDDEEDVLQVGDKVLAL-------------------NK--------------ELLHGFSDQCVVHTNDVFKIP 131 (296)
Q Consensus 85 ~~~~~~~~g~~v~~~~~Gd~V~~~-------------------~~--------------~~~g~~~~~~~v~~~~~~~iP 131 (296)
|++|++|++||||-.= ++ -..|+|++|+++++..+++||
T Consensus 81 --------Gs~V~~~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~t~~g~~~DGt~~~ggf~~~~~v~~~~a~kIP 152 (360)
T KOG0023|consen 81 --------GSNVTGFKIGDRVGVGWLNGSCLSCEYCKSGNENYCPKMHFTYNGVYHDGTITQGGFQEYAVVDEVFAIKIP 152 (360)
T ss_pred --------CCCcccccccCeeeeeEEeccccCccccccCCcccCCceeEeccccccCCCCccCccceeEEEeeeeEEECC
Confidence 9999999999999730 00 013669999999999999999
Q ss_pred CCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc-hHHHHHhcCCcE
Q psy1959 132 EKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED-KTDLIRQKGAWA 210 (296)
Q Consensus 132 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~-~~~~~~~~g~~~ 210 (296)
++++++.||.|.++..|.|..+ ...++.||+++.|.|+ |++|.+++|+| +++|.+|++++++.+ |.+.++.+|++.
T Consensus 153 ~~~pl~~aAPlLCaGITvYspL-k~~g~~pG~~vgI~Gl-GGLGh~aVq~A-KAMG~rV~vis~~~~kkeea~~~LGAd~ 229 (360)
T KOG0023|consen 153 ENLPLASAAPLLCAGITVYSPL-KRSGLGPGKWVGIVGL-GGLGHMAVQYA-KAMGMRVTVISTSSKKKEEAIKSLGADV 229 (360)
T ss_pred CCCChhhccchhhcceEEeehh-HHcCCCCCcEEEEecC-cccchHHHHHH-HHhCcEEEEEeCCchhHHHHHHhcCcce
Confidence 9999999999999999999999 6789999999999998 66999999999 889999999999885 555666799999
Q ss_pred EEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceE----------EeecccceeeeeEEeccc
Q psy1959 211 ALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALT----------FTNEKSLVNKVLEVSGGK 277 (296)
Q Consensus 211 ~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~----------~~~~~~~~~k~~~i~g~~ 277 (296)
.++..++.++.+.+...+++ ++|.+.+. ....++.++.++ +.+|.+ .++...++.+.+.|.||.
T Consensus 230 fv~~~~d~d~~~~~~~~~dg-~~~~v~~~-a~~~~~~~~~~l-k~~Gt~V~vg~p~~~~~~~~~~lil~~~~I~GS~ 303 (360)
T KOG0023|consen 230 FVDSTEDPDIMKAIMKTTDG-GIDTVSNL-AEHALEPLLGLL-KVNGTLVLVGLPEKPLKLDTFPLILGRKSIKGSI 303 (360)
T ss_pred eEEecCCHHHHHHHHHhhcC-cceeeeec-cccchHHHHHHh-hcCCEEEEEeCcCCcccccchhhhcccEEEEeec
Confidence 98887548999999988864 77777766 446889999999 777766 345568899999999987
No 6
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=100.00 E-value=1.2e-36 Score=267.63 Aligned_cols=245 Identities=25% Similarity=0.292 Sum_probs=214.9
Q ss_pred CcceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCC
Q psy1959 12 SSDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTK 86 (296)
Q Consensus 12 ~~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~ 86 (296)
++++.+.++++++ +..++|+++ |||||+.++|+|++|...+.|..+.. +|.++|||.+|+|++|
T Consensus 2 k~~aAV~~~~~~Pl~i~ei~l~~P~~g-----EVlVri~AtGVCHTD~~~~~G~~p~~--~P~vLGHEgAGiVe~V---- 70 (366)
T COG1062 2 KTRAAVAREAGKPLEIEEVDLDPPRAG-----EVLVRITATGVCHTDAHTLSGDDPEG--FPAVLGHEGAGIVEAV---- 70 (366)
T ss_pred CceEeeeecCCCCeEEEEEecCCCCCC-----eEEEEEEEeeccccchhhhcCCCCCC--CceecccccccEEEEe----
Confidence 4678888888888 667889999 99999999999999999999998863 8999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCEEEEecC--------------------------------------------CCC--CcccceE
Q psy1959 87 SSSTEEDDEEDVLQVGDKVLALNK--------------------------------------------ELL--HGFSDQC 120 (296)
Q Consensus 87 ~~~~~~g~~v~~~~~Gd~V~~~~~--------------------------------------------~~~--g~~~~~~ 120 (296)
|++|+++++||+|+.... ++. ++|+||.
T Consensus 71 ------G~gVt~vkpGDhVI~~f~p~CG~C~~C~sGk~nlC~~~~~~~~kG~m~dGttrls~~~~~~~h~lG~stFa~y~ 144 (366)
T COG1062 71 ------GEGVTSVKPGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMPDGTTRLSGNGVPVYHYLGCSTFAEYT 144 (366)
T ss_pred ------cCCccccCCCCEEEEcccCCCCCCchhhCCCcccccchhhhcccccccCCceeeecCCcceeeeeccccchhhe
Confidence 999999999999995321 122 4899999
Q ss_pred eeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcch
Q psy1959 121 VVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDK 199 (296)
Q Consensus 121 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~ 199 (296)
+++...++|++++.+++.++.|.+..+|.+.+..+.+++++|+++.|+|. |++|++++|-| +..|+ ++|+++.+++|
T Consensus 145 vv~~~s~vki~~~~p~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~Gl-GgVGlaaI~gA-~~agA~~IiAvD~~~~K 222 (366)
T COG1062 145 VVHEISLVKIDPDAPLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGL-GGVGLAAIQGA-KAAGAGRIIAVDINPEK 222 (366)
T ss_pred eecccceEECCCCCCccceEEEeeeeccChHHhhhcccCCCCCeEEEEec-cHhHHHHHHHH-HHcCCceEEEEeCCHHH
Confidence 99999999999999999999999999999999889999999999999998 99999999999 67788 99999999999
Q ss_pred HHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceE-----------Eeecccce
Q psy1959 200 TDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALT-----------FTNEKSLV 267 (296)
Q Consensus 200 ~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~-----------~~~~~~~~ 267 (296)
+++++++|++++++..+..+..+.+.+++++ |+|.+|||+|+ +.++.++++..+|+..+ .++..+++
T Consensus 223 l~~A~~fGAT~~vn~~~~~~vv~~i~~~T~g-G~d~~~e~~G~~~~~~~al~~~~~~G~~v~iGv~~~~~~i~~~~~~lv 301 (366)
T COG1062 223 LELAKKFGATHFVNPKEVDDVVEAIVELTDG-GADYAFECVGNVEVMRQALEATHRGGTSVIIGVAGAGQEISTRPFQLV 301 (366)
T ss_pred HHHHHhcCCceeecchhhhhHHHHHHHhcCC-CCCEEEEccCCHHHHHHHHHHHhcCCeEEEEecCCCCceeecChHHee
Confidence 9999999999999998733789999999976 99999999999 89999999995544333 23344555
Q ss_pred eeeeEEeccc
Q psy1959 268 NKVLEVSGGK 277 (296)
Q Consensus 268 ~k~~~i~g~~ 277 (296)
.. ..++|+.
T Consensus 302 ~g-r~~~Gs~ 310 (366)
T COG1062 302 TG-RVWKGSA 310 (366)
T ss_pred cc-ceEEEEe
Confidence 55 6777765
No 7
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=100.00 E-value=8.9e-36 Score=276.47 Aligned_cols=233 Identities=29% Similarity=0.337 Sum_probs=201.5
Q ss_pred CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCE
Q psy1959 25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDK 104 (296)
Q Consensus 25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~ 104 (296)
.|.|.|.++ ||+|||.+++||++|++.+.|.++ ..+|.++|||++|+|+++ |+++.++++|||
T Consensus 26 ~~~P~~~~~-----evlV~v~~~gi~~~D~~~~~g~~~--~~~p~i~GhE~~G~V~~v----------G~~v~~~~~Gdr 88 (371)
T cd08281 26 VELDPPGPG-----EVLVKIAAAGLCHSDLSVINGDRP--RPLPMALGHEAAGVVVEV----------GEGVTDLEVGDH 88 (371)
T ss_pred eecCCCCCC-----eEEEEEEEEeeCccchHhhcCCCC--CCCCccCCccceeEEEEe----------CCCCCcCCCCCE
Confidence 677788888 999999999999999999998754 346899999999999999 999999999999
Q ss_pred EEEecCC----------------------------------------------CCCcccceEeeeCCceEECCCCCCHHH
Q psy1959 105 VLALNKE----------------------------------------------LLHGFSDQCVVHTNDVFKIPEKMTFEH 138 (296)
Q Consensus 105 V~~~~~~----------------------------------------------~~g~~~~~~~v~~~~~~~iP~~~~~~~ 138 (296)
|++.... ..|+|+||+.+++..++++|+++++++
T Consensus 89 V~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~g~G~~aey~~v~~~~~~~lP~~l~~~~ 168 (371)
T cd08281 89 VVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTLLSGGRRLRLRGGEINHHLGVSAFAEYAVVSRRSVVKIDKDVPLEI 168 (371)
T ss_pred EEEccCCCCCCCccccCCCcccccCccccccccccccCcccccccCcccccccCcccceeeEEecccceEECCCCCChHH
Confidence 9863210 026899999999999999999999999
Q ss_pred HhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCCcEEEEcCCc
Q psy1959 139 AASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALTFTNE 217 (296)
Q Consensus 139 aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~ 217 (296)
++.+..++.+||+++.+.+++++|++|+|.|+ |++|++++|+| +..|+ +|++++.+++|++.++++|++.++++.+
T Consensus 169 aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G~-G~vG~~a~~la-k~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~- 245 (371)
T cd08281 169 AALFGCAVLTGVGAVVNTAGVRPGQSVAVVGL-GGVGLSALLGA-VAAGASQVVAVDLNEDKLALARELGATATVNAGD- 245 (371)
T ss_pred hhhhcchHHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCc-
Confidence 99999999999999878889999999999996 99999999999 67899 6999999999999999999998888876
Q ss_pred hhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEe------------ecccceeeeeEEeccccc
Q psy1959 218 KSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFT------------NEKSLVNKVLEVSGGKYA 279 (296)
Q Consensus 218 ~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~------------~~~~~~~k~~~i~g~~~~ 279 (296)
.++.+.+++.+++ ++|++|||+|. +.+..+++++ +++|++.. +...++.|+++|.|++..
T Consensus 246 ~~~~~~i~~~~~~-g~d~vid~~G~~~~~~~~~~~l-~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~ 318 (371)
T cd08281 246 PNAVEQVRELTGG-GVDYAFEMAGSVPALETAYEIT-RRGGTTVTAGLPDPEARLSVPALSLVAEERTLKGSYMG 318 (371)
T ss_pred hhHHHHHHHHhCC-CCCEEEECCCChHHHHHHHHHH-hcCCEEEEEccCCCCceeeecHHHHhhcCCEEEEEecC
Confidence 6788888888766 89999999997 6899999999 77776632 122356688899887643
No 8
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=100.00 E-value=1.2e-35 Score=271.99 Aligned_cols=244 Identities=23% Similarity=0.320 Sum_probs=206.4
Q ss_pred cceEEecCCCCC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCC
Q psy1959 13 SDLLLYNGSGDA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSS 88 (296)
Q Consensus 13 ~~~~~~~~~~~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~ 88 (296)
|+++++.+++.. .|.|.|.++ ||+||+.++++|++|+..+.+.+.....+|.++|||++|+|+++
T Consensus 1 mka~~~~~~~~l~~~~~~~p~~~~~-----evlV~v~~~gi~~~D~~~~~~~~~~~~~~p~i~G~e~~G~V~~v------ 69 (339)
T cd08239 1 MRGAVFPGDRTVELREFPVPVPGPG-----EVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAV------ 69 (339)
T ss_pred CeEEEEecCCceEEEecCCCCCCCC-----eEEEEEEEEEeccccHHHHcCCCCccCCCCceeccCceEEEEEE------
Confidence 678888876655 677888888 99999999999999999987764322345889999999999999
Q ss_pred CCCCCCCCCCCCCCCEEEEecC--------------------------CCCCcccceEeeeCCceEECCCCCCHHHHhhh
Q psy1959 89 STEEDDEEDVLQVGDKVLALNK--------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASL 142 (296)
Q Consensus 89 ~~~~g~~v~~~~~Gd~V~~~~~--------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l 142 (296)
|++++.+++||+|+.... +..|+|+||+.++.+.++++|+++++++++.+
T Consensus 70 ----G~~v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~g~~~~G~~ae~~~v~~~~~~~~P~~~~~~~aa~l 145 (339)
T cd08239 70 ----GPGVTHFRVGDRVMVYHYVGCGACRNCRRGWMQLCTSKRAAYGWNRDGGHAEYMLVPEKTLIPLPDDLSFADGALL 145 (339)
T ss_pred ----CCCCccCCCCCEEEECCCCCCCCChhhhCcCcccCcCcccccccCCCCcceeEEEechHHeEECCCCCCHHHhhhh
Confidence 999999999999987531 12589999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCE-EEEEeCCcchHHHHHhcCCcEEEEcCCchhHH
Q psy1959 143 ADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAK-VIGVCNSEDKTDLIRQKGAWAALTFTNEKSLV 221 (296)
Q Consensus 143 ~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~-Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 221 (296)
++++.|||+++ ...++++|++|+|+|+ |++|++++|+| +.+|++ |+++++++++.+.++++|++.++++++ .+ .
T Consensus 146 ~~~~~ta~~~l-~~~~~~~g~~vlV~G~-G~vG~~~~~~a-k~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~-~~-~ 220 (339)
T cd08239 146 LCGIGTAYHAL-RRVGVSGRDTVLVVGA-GPVGLGALMLA-RALGAEDVIGVDPSPERLELAKALGADFVINSGQ-DD-V 220 (339)
T ss_pred cchHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCc-ch-H
Confidence 99999999999 5678899999999986 99999999999 678998 999999999999999999998888876 45 6
Q ss_pred HHHHHHhCCCcccEEEECCCCc-cHHHHHHHhhccCceEEee----------cccceeeeeEEeccc
Q psy1959 222 NKVLEVSGGKYANVVFEAVGGE-DKTDLIRQKGAWAALTFTN----------EKSLVNKVLEVSGGK 277 (296)
Q Consensus 222 ~~i~~~~~~~g~d~vld~~g~~-~~~~~~~~lg~~~g~~~~~----------~~~~~~k~~~i~g~~ 277 (296)
+.+.+.++++++|++||++|+. .+..+++++ +.+|++.+- ...++.|+++|.|++
T Consensus 221 ~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l-~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~g~~ 286 (339)
T cd08239 221 QEIRELTSGAGADVAIECSGNTAARRLALEAV-RPWGRLVLVGEGGELTIEVSNDLIRKQRTLIGSW 286 (339)
T ss_pred HHHHHHhCCCCCCEEEECCCCHHHHHHHHHHh-hcCCEEEEEcCCCCcccCcHHHHHhCCCEEEEEe
Confidence 6777777777899999999995 568899999 777776421 123556778888766
No 9
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=100.00 E-value=1.3e-35 Score=274.17 Aligned_cols=245 Identities=20% Similarity=0.217 Sum_probs=210.2
Q ss_pred CcceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCC
Q psy1959 12 SSDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTK 86 (296)
Q Consensus 12 ~~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~ 86 (296)
+||++++++++.. .|.|.|.++ ||+|||.++++|++|++.+.|... ..+|.++|||++|+|+++
T Consensus 1 ~mka~~~~~~~~~~~~~~~~~p~~~~~-----evlV~v~~~gi~~~D~~~~~g~~~--~~~p~i~G~e~~G~V~~v---- 69 (358)
T TIGR03451 1 TVRGVIARSKGAPVELETIVVPDPGPG-----EVIVDIQACGVCHTDLHYREGGIN--DEFPFLLGHEAAGVVEAV---- 69 (358)
T ss_pred CcEEEEEccCCCCCEEEEEECCCCCCC-----eEEEEEEEEeecHHHHHHhcCCcc--ccCCcccccceEEEEEEe----
Confidence 5889999988764 677888888 999999999999999999988653 346899999999999999
Q ss_pred CCCCCCCCCCCCCCCCCEEEEecC--------------------------------------CCCCcccceEeeeCCceE
Q psy1959 87 SSSTEEDDEEDVLQVGDKVLALNK--------------------------------------ELLHGFSDQCVVHTNDVF 128 (296)
Q Consensus 87 ~~~~~~g~~v~~~~~Gd~V~~~~~--------------------------------------~~~g~~~~~~~v~~~~~~ 128 (296)
|+++.+|++||+|++... ...|+|+||+.+++++++
T Consensus 70 ------G~~v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~ 143 (358)
T TIGR03451 70 ------GEGVTDVAPGDYVVLNWRAVCGQCRACKRGRPWYCFDTHNATQKMTLTDGTELSPALGIGAFAEKTLVHAGQCT 143 (358)
T ss_pred ------CCCCcccCCCCEEEEccCCCCCCChHHhCcCcccCcCccccccccccccCcccccccccccccceEEEehhheE
Confidence 999999999999986210 014899999999999999
Q ss_pred ECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcC
Q psy1959 129 KIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKG 207 (296)
Q Consensus 129 ~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g 207 (296)
++|+++++++++.+++++.+||+++.+.+++++|++|+|+|+ |++|++++|+| +..|+ +|+++++++++.++++++|
T Consensus 144 ~ip~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~-g~vG~~a~~~a-k~~G~~~Vi~~~~~~~~~~~~~~~G 221 (358)
T TIGR03451 144 KVDPAADPAAAGLLGCGVMAGLGAAVNTGGVKRGDSVAVIGC-GGVGDAAIAGA-ALAGASKIIAVDIDDRKLEWAREFG 221 (358)
T ss_pred ECCCCCChhHhhhhcccchhhHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCeEEEEcCCHHHHHHHHHcC
Confidence 999999999999999899999998878889999999999986 99999999999 67899 5999999999999999999
Q ss_pred CcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEee------------cccceeeeeEEe
Q psy1959 208 AWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFTN------------EKSLVNKVLEVS 274 (296)
Q Consensus 208 ~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~~------------~~~~~~k~~~i~ 274 (296)
++.++++++ .++.+.+.+.+++.++|++||++|+ +.+..+++++ +.+|++.+- ...++.|++++.
T Consensus 222 a~~~i~~~~-~~~~~~i~~~~~~~g~d~vid~~g~~~~~~~~~~~~-~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~ 299 (358)
T TIGR03451 222 ATHTVNSSG-TDPVEAIRALTGGFGADVVIDAVGRPETYKQAFYAR-DLAGTVVLVGVPTPDMTLELPLLDVFGRGGALK 299 (358)
T ss_pred CceEEcCCC-cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHh-ccCCEEEEECCCCCCceeeccHHHHhhcCCEEE
Confidence 998888876 6778888888877789999999998 6899999999 777766321 123555677777
Q ss_pred ccc
Q psy1959 275 GGK 277 (296)
Q Consensus 275 g~~ 277 (296)
+++
T Consensus 300 ~~~ 302 (358)
T TIGR03451 300 SSW 302 (358)
T ss_pred Eee
Confidence 764
No 10
>PLN02740 Alcohol dehydrogenase-like
Probab=100.00 E-value=3.6e-35 Score=273.36 Aligned_cols=248 Identities=21% Similarity=0.275 Sum_probs=208.6
Q ss_pred CcceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCC
Q psy1959 12 SSDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTK 86 (296)
Q Consensus 12 ~~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~ 86 (296)
.|++++++++++. .|.|.|.++ ||+|||.+++||++|++.+.|.+.....+|.++|||++|+|+++
T Consensus 10 ~mka~~~~~~~~~~~~~e~~~P~~~~~-----eVlV~v~~~gic~sD~~~~~g~~~~~~~~p~i~GhE~~G~V~~v---- 80 (381)
T PLN02740 10 TCKAAVAWGPGEPLVMEEIRVDPPQKM-----EVRIKILYTSICHTDLSAWKGENEAQRAYPRILGHEAAGIVESV---- 80 (381)
T ss_pred eeEEEEEecCCCCcEEEEeeCCCCCCC-----eEEEEEEEEecChhhHHHhCCCCcccCCCCccccccceEEEEEe----
Confidence 5999999988753 577778888 99999999999999999999876544567999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCEEEEecCC-------------------------------------------------CCCccc
Q psy1959 87 SSSTEEDDEEDVLQVGDKVLALNKE-------------------------------------------------LLHGFS 117 (296)
Q Consensus 87 ~~~~~~g~~v~~~~~Gd~V~~~~~~-------------------------------------------------~~g~~~ 117 (296)
|+++..+++||||++.... ..|+|+
T Consensus 81 ------G~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~a 154 (381)
T PLN02740 81 ------GEGVEDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFT 154 (381)
T ss_pred ------CCCCCcCCCCCEEEecCCCCCCCChhhcCCCcccccCccccccccccccCCCcccccccCCCcccccccCccce
Confidence 9999999999999874310 148999
Q ss_pred ceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCC
Q psy1959 118 DQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNS 196 (296)
Q Consensus 118 ~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~ 196 (296)
||++++.+.++++|++++.++++.+.+++.+||+++.+.+++++|++|+|+|+ |++|++++|+| +.+|+ +|++++++
T Consensus 155 ey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~-G~vG~~a~q~a-k~~G~~~Vi~~~~~ 232 (381)
T PLN02740 155 EYTVLDSACVVKIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGL-GAVGLAVAEGA-RARGASKIIGVDIN 232 (381)
T ss_pred eEEEEehHHeEECCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHH-HHCCCCcEEEEcCC
Confidence 99999999999999999999999999999999998877889999999999996 99999999999 67899 69999999
Q ss_pred cchHHHHHhcCCcEEEEcCCc-hhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccC-ceEEeec----------
Q psy1959 197 EDKTDLIRQKGAWAALTFTNE-KSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWA-ALTFTNE---------- 263 (296)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~-~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~-g~~~~~~---------- 263 (296)
++|++.++++|++.++++++. .++.+.+.+.+++ ++|++||++|+ ..+..+++++ +.+ |++.+-.
T Consensus 233 ~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~-g~dvvid~~G~~~~~~~a~~~~-~~g~G~~v~~G~~~~~~~~~~ 310 (381)
T PLN02740 233 PEKFEKGKEMGITDFINPKDSDKPVHERIREMTGG-GVDYSFECAGNVEVLREAFLST-HDGWGLTVLLGIHPTPKMLPL 310 (381)
T ss_pred hHHHHHHHHcCCcEEEecccccchHHHHHHHHhCC-CCCEEEECCCChHHHHHHHHhh-hcCCCEEEEEccCCCCceecc
Confidence 999999999999888887642 2477778888766 89999999998 6889999999 664 6553211
Q ss_pred ccc-eeeeeEEecccc
Q psy1959 264 KSL-VNKVLEVSGGKY 278 (296)
Q Consensus 264 ~~~-~~k~~~i~g~~~ 278 (296)
... +.++++|.|+..
T Consensus 311 ~~~~~~~~~~i~g~~~ 326 (381)
T PLN02740 311 HPMELFDGRSITGSVF 326 (381)
T ss_pred cHHHHhcCCeEEEEec
Confidence 001 236778877653
No 11
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=100.00 E-value=2.7e-34 Score=266.29 Aligned_cols=227 Identities=22% Similarity=0.293 Sum_probs=196.2
Q ss_pred cceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCC
Q psy1959 13 SDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKS 87 (296)
Q Consensus 13 ~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~ 87 (296)
|+++++..++.. .|.|.|.++ ||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++
T Consensus 2 ~~a~~~~~~~~~l~~~~~~~P~~~~~-----eVlI~v~a~gi~~sD~~~~~g~~~~-~~~p~i~GhE~~G~V~~v----- 70 (368)
T TIGR02818 2 SRAAVAWAAGQPLKIEEVDVEMPQKG-----EVLVRIVATGVCHTDAFTLSGADPE-GVFPVILGHEGAGIVEAV----- 70 (368)
T ss_pred ceEEEEecCCCCeEEEEecCCCCCCC-----eEEEEEEEecccHHHHHHhcCCCCC-CCCCeeeccccEEEEEEE-----
Confidence 677777766543 577778888 9999999999999999999887643 357899999999999999
Q ss_pred CCCCCCCCCCCCCCCCEEEEecCC----------------------------------------------CCCcccceEe
Q psy1959 88 SSTEEDDEEDVLQVGDKVLALNKE----------------------------------------------LLHGFSDQCV 121 (296)
Q Consensus 88 ~~~~~g~~v~~~~~Gd~V~~~~~~----------------------------------------------~~g~~~~~~~ 121 (296)
|++++++++||||+..... ..|+|+||++
T Consensus 71 -----G~~v~~~~~GdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~G~~aey~~ 145 (368)
T TIGR02818 71 -----GEGVTSVKVGDHVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLMPDGTSRFSKDGQPIYHYMGCSTFSEYTV 145 (368)
T ss_pred -----CCCCccCCCCCEEEEcCCCCCCCChhhhCCCcccccCcccccccccccCCccccccCCCcccccccCccceeeEE
Confidence 9999999999999875310 0268999999
Q ss_pred eeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchH
Q psy1959 122 VHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKT 200 (296)
Q Consensus 122 v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~ 200 (296)
+|..+++++|+++++++++.++.++.+||+++.+.+++++|++|+|+|+ |++|++++|+| +.+|+ +|++++++++++
T Consensus 146 v~~~~~~~lP~~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~-G~iG~~a~q~A-k~~G~~~Vi~~~~~~~~~ 223 (368)
T TIGR02818 146 VPEISLAKINPAAPLEEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGL-GGIGLSVIQGA-RMAKASRIIAIDINPAKF 223 (368)
T ss_pred echhheEECCCCCCHHHhhhhcchhHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCeEEEEcCCHHHH
Confidence 9999999999999999999999999999999878889999999999986 99999999999 67898 799999999999
Q ss_pred HHHHhcCCcEEEEcCC-chhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccC-ceE
Q psy1959 201 DLIRQKGAWAALTFTN-EKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWA-ALT 259 (296)
Q Consensus 201 ~~~~~~g~~~~~~~~~-~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~-g~~ 259 (296)
+.++++|++.++++.+ ..++.+.+++++++ ++|++||++|+ ..+..+++++ +++ |++
T Consensus 224 ~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~-g~d~vid~~G~~~~~~~~~~~~-~~~~G~~ 283 (368)
T TIGR02818 224 ELAKKLGATDCVNPNDYDKPIQEVIVEITDG-GVDYSFECIGNVNVMRAALECC-HKGWGES 283 (368)
T ss_pred HHHHHhCCCeEEcccccchhHHHHHHHHhCC-CCCEEEECCCCHHHHHHHHHHh-hcCCCeE
Confidence 9999999998887753 24566777787765 89999999998 6788999999 664 665
No 12
>KOG0025|consensus
Probab=100.00 E-value=2.1e-34 Score=247.03 Aligned_cols=261 Identities=22% Similarity=0.268 Sum_probs=221.5
Q ss_pred ccCCcceEEecCCCCC--------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEE
Q psy1959 9 ALNSSDLLLYNGSGDA--------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVI 80 (296)
Q Consensus 9 ~~~~~~~~~~~~~~~~--------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~ 80 (296)
.-+..++++|..-+++ .+.|..... +|+||..|+.|||+|+..++|.|+.++.+|.+-|.|++|+|+
T Consensus 16 ~~~~~kalvY~~hgdP~kVlql~~~~~p~~~~s-----~v~Vk~LAaPINPsDIN~IQGvYpvrP~~PAVgGnEGv~eVv 90 (354)
T KOG0025|consen 16 MPARSKALVYSEHGDPAKVLQLKNLELPAVPGS-----DVLVKMLAAPINPSDINQIQGVYPVRPELPAVGGNEGVGEVV 90 (354)
T ss_pred cccccceeeecccCCchhhheeecccCCCCCCC-----ceeeeeeecCCChHHhhhhccccCCCCCCCcccCCcceEEEE
Confidence 3446788888887776 455666666 899999999999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCCCCCCCCCCCEEEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCC
Q psy1959 81 EVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLK 160 (296)
Q Consensus 81 ~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~ 160 (296)
.+ |+++.+|++||+|+....+ .|+|++|.+.+.+.++++++.++++.||.+..+.+|||+.|...-+++
T Consensus 91 ~v----------Gs~vkgfk~Gd~VIp~~a~-lGtW~t~~v~~e~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~ 159 (354)
T KOG0025|consen 91 AV----------GSNVKGFKPGDWVIPLSAN-LGTWRTEAVFSESDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLN 159 (354)
T ss_pred Ee----------cCCcCccCCCCeEeecCCC-CccceeeEeecccceEEcCCcCChhhhheeccCchHHHHHHHHHHhcC
Confidence 99 9999999999999988764 499999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH----HhcCCcEEEEcCCchhHHHHHHHHhCCCcccEE
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI----RQKGAWAALTFTNEKSLVNKVLEVSGGKYANVV 236 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~v 236 (296)
+|++|+..|+.+++|++++|+| ++.|.+-+-+.|+....+.+ +.+|+++++...+ ..-.+..........+.+.
T Consensus 160 ~GD~vIQNganS~VG~~ViQla-ka~GiktinvVRdR~~ieel~~~Lk~lGA~~ViTeee-l~~~~~~k~~~~~~~prLa 237 (354)
T KOG0025|consen 160 KGDSVIQNGANSGVGQAVIQLA-KALGIKTINVVRDRPNIEELKKQLKSLGATEVITEEE-LRDRKMKKFKGDNPRPRLA 237 (354)
T ss_pred CCCeeeecCcccHHHHHHHHHH-HHhCcceEEEeecCccHHHHHHHHHHcCCceEecHHH-hcchhhhhhhccCCCceEE
Confidence 9999999999999999999999 77999999998877665544 5679999886643 1112222222344578999
Q ss_pred EECCCCccHHHHHHHhhccCceE-----------EeecccceeeeeEEecccccceeeecccc
Q psy1959 237 FEAVGGEDKTDLIRQKGAWAALT-----------FTNEKSLVNKVLEVSGGKYANVVFEAVGG 288 (296)
Q Consensus 237 ld~~g~~~~~~~~~~lg~~~g~~-----------~~~~~~~~~k~~~i~g~~~~~~~~~~~~~ 288 (296)
|||+|+.......+.| .+||.. .++...+++|.+++.|.+...|.-+....
T Consensus 238 lNcVGGksa~~iar~L-~~GgtmvTYGGMSkqPv~~~ts~lIFKdl~~rGfWvt~W~~~~~~p 299 (354)
T KOG0025|consen 238 LNCVGGKSATEIARYL-ERGGTMVTYGGMSKQPVTVPTSLLIFKDLKLRGFWVTRWKKEHKSP 299 (354)
T ss_pred EeccCchhHHHHHHHH-hcCceEEEecCccCCCcccccchheeccceeeeeeeeehhhccCCc
Confidence 9999998888888999 777765 45667999999999999987777666433
No 13
>KOG0022|consensus
Probab=100.00 E-value=4.1e-35 Score=254.36 Aligned_cols=226 Identities=23% Similarity=0.282 Sum_probs=202.8
Q ss_pred CCcceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccC
Q psy1959 11 NSSDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADT 85 (296)
Q Consensus 11 ~~~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~ 85 (296)
...|+++.++++++ +.+++|+.+ ||+||+.++++|++|.+.++|..+ ...+|.++|||.+|+|+.+
T Consensus 6 I~CKAAV~w~a~~PL~IEei~V~pPka~-----EVRIKI~~t~vCHTD~~~~~g~~~-~~~fP~IlGHEaaGIVESv--- 76 (375)
T KOG0022|consen 6 ITCKAAVAWEAGKPLVIEEIEVAPPKAH-----EVRIKILATGVCHTDAYVWSGKDP-EGLFPVILGHEAAGIVESV--- 76 (375)
T ss_pred eEEeEeeeccCCCCeeEEEEEeCCCCCc-----eEEEEEEEEeeccccceeecCCCc-cccCceEecccceeEEEEe---
Confidence 35788999998888 567788999 999999999999999999999873 3678999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEecC---------------------------------------------CCCC--cccc
Q psy1959 86 KSSSTEEDDEEDVLQVGDKVLALNK---------------------------------------------ELLH--GFSD 118 (296)
Q Consensus 86 ~~~~~~~g~~v~~~~~Gd~V~~~~~---------------------------------------------~~~g--~~~~ 118 (296)
|++|+.+++||+|+.... ++-| +|+|
T Consensus 77 -------GegV~~vk~GD~Viplf~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~~~gk~iyHfmg~StFsE 149 (375)
T KOG0022|consen 77 -------GEGVTTVKPGDHVIPLFTPQCGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFTCKGKPIYHFMGTSTFSE 149 (375)
T ss_pred -------cCCccccCCCCEEeeccccCCCCcccccCCCCChhhhhcccccccccccCCceeeeeCCCceEEeccccccee
Confidence 999999999999995321 2223 8999
Q ss_pred eEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCc
Q psy1959 119 QCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSE 197 (296)
Q Consensus 119 ~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~ 197 (296)
|.+++...+++|++..+++.++.|.+..+|+|.+.-+.+++++|+++.|+|. |++|+++++-| ++.|+ ++|.+|.++
T Consensus 150 YTVv~~~~v~kId~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfGL-G~VGLav~~Ga-ka~GAsrIIgvDiN~ 227 (375)
T KOG0022|consen 150 YTVVDDISVAKIDPSAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFGL-GGVGLAVAMGA-KAAGASRIIGVDINP 227 (375)
T ss_pred EEEeecceeEecCCCCChhheeEeeccccccchhhhhhcccCCCCEEEEEec-chHHHHHHHhH-HhcCcccEEEEecCH
Confidence 9999999999999999999999999999999999889999999999999998 99999999999 56787 999999999
Q ss_pred chHHHHHhcCCcEEEEcCCc-hhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccC
Q psy1959 198 DKTDLIRQKGAWAALTFTNE-KSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWA 256 (296)
Q Consensus 198 ~~~~~~~~~g~~~~~~~~~~-~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~ 256 (296)
+|.++++++|++..+|..+. ....+.+++.|++ |+|..|||+|+ +.+++++.+. ..+
T Consensus 228 ~Kf~~ak~fGaTe~iNp~d~~~~i~evi~EmTdg-GvDysfEc~G~~~~m~~al~s~-h~G 286 (375)
T KOG0022|consen 228 DKFEKAKEFGATEFINPKDLKKPIQEVIIEMTDG-GVDYSFECIGNVSTMRAALESC-HKG 286 (375)
T ss_pred HHHHHHHhcCcceecChhhccccHHHHHHHHhcC-CceEEEEecCCHHHHHHHHHHh-hcC
Confidence 99999999999999998743 3477888999974 99999999999 8999999998 444
No 14
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=100.00 E-value=1.8e-33 Score=260.77 Aligned_cols=229 Identities=22% Similarity=0.280 Sum_probs=196.7
Q ss_pred CcceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCC
Q psy1959 12 SSDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTK 86 (296)
Q Consensus 12 ~~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~ 86 (296)
.|+++++..++.. .|.|.|.++ ||+||+.++++|++|++.+.|.++. ..+|.++|||++|+|+++
T Consensus 2 ~~~a~~~~~~~~~~~~~~~~~P~~~~~-----eVlIrv~a~gi~~~D~~~~~g~~~~-~~~p~v~G~E~~G~V~~v---- 71 (368)
T cd08300 2 TCKAAVAWEAGKPLSIEEVEVAPPKAG-----EVRIKILATGVCHTDAYTLSGADPE-GLFPVILGHEGAGIVESV---- 71 (368)
T ss_pred cceEEEEecCCCCcEEEEeecCCCCCC-----EEEEEEEEEEechhhHHHhcCCCcc-CCCCceeccceeEEEEEe----
Confidence 3667766655443 677788888 9999999999999999999887653 357999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCEEEEecCC----------------------------------------------CCCcccceE
Q psy1959 87 SSSTEEDDEEDVLQVGDKVLALNKE----------------------------------------------LLHGFSDQC 120 (296)
Q Consensus 87 ~~~~~~g~~v~~~~~Gd~V~~~~~~----------------------------------------------~~g~~~~~~ 120 (296)
|+++++|++||+|++.... ..|+|+||+
T Consensus 72 ------G~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~ 145 (368)
T cd08300 72 ------GEGVTSVKPGDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLMPDGTSRFSCKGKPIYHFMGTSTFSEYT 145 (368)
T ss_pred ------CCCCccCCCCCEEEEcCCCCCCCChhhcCCCcCcCCCccccccccccCCCccccccCCcccccccccccceeEE
Confidence 9999999999999875110 126899999
Q ss_pred eeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcch
Q psy1959 121 VVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDK 199 (296)
Q Consensus 121 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~ 199 (296)
.++...++++|+++++++++.+..++.+||+++.+.+++++|++|+|+|+ |++|++++|+| +.+|+ +|++++++++|
T Consensus 146 ~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~-G~vG~~a~~~a-k~~G~~~vi~~~~~~~~ 223 (368)
T cd08300 146 VVAEISVAKINPEAPLDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGL-GAVGLAVIQGA-KAAGASRIIGIDINPDK 223 (368)
T ss_pred EEchhceEeCCCCCChhhhhhhccchhhhHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCeEEEEeCCHHH
Confidence 99999999999999999999999999999999877889999999999986 99999999999 67899 79999999999
Q ss_pred HHHHHhcCCcEEEEcCCc-hhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccC-ceEE
Q psy1959 200 TDLIRQKGAWAALTFTNE-KSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWA-ALTF 260 (296)
Q Consensus 200 ~~~~~~~g~~~~~~~~~~-~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~-g~~~ 260 (296)
++.++++|++.++++.+. .++.+.+.+++++ ++|++||++|+ ..+..+++++ +++ |++.
T Consensus 224 ~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~-g~d~vid~~g~~~~~~~a~~~l-~~~~G~~v 285 (368)
T cd08300 224 FELAKKFGATDCVNPKDHDKPIQQVLVEMTDG-GVDYTFECIGNVKVMRAALEAC-HKGWGTSV 285 (368)
T ss_pred HHHHHHcCCCEEEcccccchHHHHHHHHHhCC-CCcEEEECCCChHHHHHHHHhh-ccCCCeEE
Confidence 999999999988887652 2577788888765 89999999998 6889999999 664 6663
No 15
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=100.00 E-value=2.7e-33 Score=254.98 Aligned_cols=246 Identities=24% Similarity=0.333 Sum_probs=204.1
Q ss_pred cceEEecCCCC----------CCCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEE
Q psy1959 13 SDLLLYNGSGD----------AKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEV 82 (296)
Q Consensus 13 ~~~~~~~~~~~----------~~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v 82 (296)
|+++++.+++. ..|.|.|.++ ||+||+.++++|++|+..+.|.++....+|.++|||++|+|+++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~p~~~~~-----evlv~v~~~gi~~~d~~~~~g~~~~~~~~p~v~G~e~~G~V~~v 75 (324)
T cd08291 1 MKALLLEEYGKPLEVKELSLPEPEVPEPGPG-----EVLIKVEAAPINPSDLGFLKGQYGSTKALPVPPGFEGSGTVVAA 75 (324)
T ss_pred CeEEEEeecCCCccccEEEecccCCCCCCCC-----eEEEEEEEccCCHHHHHHhcCcCCCCCCCCcCCCcceEEEEEEE
Confidence 56666665542 1567778888 99999999999999999998876544567899999999999999
Q ss_pred ccCCCCCCCCCCCCCC-CCCCCEEEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCC
Q psy1959 83 ADTKSSSTEEDDEEDV-LQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKE 161 (296)
Q Consensus 83 ~~~~~~~~~~g~~v~~-~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~ 161 (296)
|+++.+ |++||+|+++... .|+|+||++++++.++++|++++++++++++..+.+||..+ ..... +
T Consensus 76 ----------G~~v~~~~~vGd~V~~~~~~-~g~~a~~~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~-~~~~~-~ 142 (324)
T cd08291 76 ----------GGGPLAQSLIGKRVAFLAGS-YGTYAEYAVADAQQCLPLPDGVSFEQGASSFVNPLTALGML-ETARE-E 142 (324)
T ss_pred ----------CCCccccCCCCCEEEecCCC-CCcchheeeecHHHeEECCCCCCHHHHhhhcccHHHHHHHH-Hhhcc-C
Confidence 999986 9999999987531 38999999999999999999999999998888999998665 55555 5
Q ss_pred CcEEEEE-cCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECC
Q psy1959 162 KQTVLVT-AAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAV 240 (296)
Q Consensus 162 g~~vlI~-Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~ 240 (296)
++.++|+ +++|++|++++|+| +.+|++|+++++++++.++++++|++.+++++. .++.+.+++.+.++++|++||++
T Consensus 143 ~~~vlv~~~g~g~vG~~a~q~a-~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~-~~~~~~v~~~~~~~~~d~vid~~ 220 (324)
T cd08291 143 GAKAVVHTAAASALGRMLVRLC-KADGIKVINIVRRKEQVDLLKKIGAEYVLNSSD-PDFLEDLKELIAKLNATIFFDAV 220 (324)
T ss_pred CCcEEEEccCccHHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHcCCcEEEECCC-ccHHHHHHHHhCCCCCcEEEECC
Confidence 5566665 77899999999999 678999999999999999999999999998876 67888888888778999999999
Q ss_pred CCccHHHHHHHhhccCceEEee------------cccceeeeeEEeccccc
Q psy1959 241 GGEDKTDLIRQKGAWAALTFTN------------EKSLVNKVLEVSGGKYA 279 (296)
Q Consensus 241 g~~~~~~~~~~lg~~~g~~~~~------------~~~~~~k~~~i~g~~~~ 279 (296)
|+......++++ +.+|++... ...++.|++++.++...
T Consensus 221 g~~~~~~~~~~l-~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (324)
T cd08291 221 GGGLTGQILLAM-PYGSTLYVYGYLSGKLDEPIDPVDLIFKNKSIEGFWLT 270 (324)
T ss_pred CcHHHHHHHHhh-CCCCEEEEEEecCCCCcccCCHHHHhhcCcEEEEEEHH
Confidence 998888889999 777765321 22345677888877633
No 16
>PLN02827 Alcohol dehydrogenase-like
Probab=100.00 E-value=2.2e-33 Score=261.06 Aligned_cols=245 Identities=22% Similarity=0.262 Sum_probs=206.4
Q ss_pred CCcceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccC
Q psy1959 11 NSSDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADT 85 (296)
Q Consensus 11 ~~~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~ 85 (296)
-.|+++++.++.+. .|.|.|.++ ||+|||.+++||++|++.+.|.. .+|.++|||++|+|+++
T Consensus 11 ~~mka~~~~~~~~~~~~~e~~~P~~~~~-----eVlVkv~~~gic~sD~~~~~g~~----~~p~i~GhE~~G~V~~v--- 78 (378)
T PLN02827 11 ITCRAAVAWGAGEALVMEEVEVSPPQPL-----EIRIKVVSTSLCRSDLSAWESQA----LFPRIFGHEASGIVESI--- 78 (378)
T ss_pred ceeEEEEEecCCCCceEEEeecCCCCCC-----EEEEEEEEEecChhHHHHhcCCC----CCCeeecccceEEEEEc---
Confidence 45899999887653 677888889 99999999999999999987742 35889999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEecCC----------------------------------------------CCCcccce
Q psy1959 86 KSSSTEEDDEEDVLQVGDKVLALNKE----------------------------------------------LLHGFSDQ 119 (296)
Q Consensus 86 ~~~~~~~g~~v~~~~~Gd~V~~~~~~----------------------------------------------~~g~~~~~ 119 (296)
|++++++++||+|+..... ..|+|+||
T Consensus 79 -------G~~v~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~G~~aey 151 (378)
T PLN02827 79 -------GEGVTEFEKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLERKGVMHSDQKTRFSIKGKPVYHYCAVSSFSEY 151 (378)
T ss_pred -------CCCCcccCCCCEEEEecCCCCCCChhhhCcCcccccCccccccccccCCCcccccccCcccccccccccceee
Confidence 9999999999999976320 12799999
Q ss_pred EeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcc
Q psy1959 120 CVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSED 198 (296)
Q Consensus 120 ~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~ 198 (296)
+.+++..++++|+++++++++.+..++.++|+++.+.+++++|++|+|+|+ |++|++++|+| +..|+ +|++++.+++
T Consensus 152 v~v~~~~~~~iP~~l~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G~-G~vG~~~iqla-k~~G~~~vi~~~~~~~ 229 (378)
T PLN02827 152 TVVHSGCAVKVDPLAPLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFGL-GTVGLSVAQGA-KLRGASQIIGVDINPE 229 (378)
T ss_pred EEechhheEECCCCCCHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCeEEEECCCHH
Confidence 999999999999999999999888899999988767788999999999996 99999999999 67898 5888888999
Q ss_pred hHHHHHhcCCcEEEEcCCc-hhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccC-ceEEee----------c-c
Q psy1959 199 KTDLIRQKGAWAALTFTNE-KSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWA-ALTFTN----------E-K 264 (296)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~-~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~-g~~~~~----------~-~ 264 (296)
|.++++++|++.++++++. .++.+.+.+.+++ ++|++||++|. ..+..+++++ +.+ |++..- . .
T Consensus 230 ~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~-g~d~vid~~G~~~~~~~~l~~l-~~g~G~iv~~G~~~~~~~~~~~~ 307 (378)
T PLN02827 230 KAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGG-GADYSFECVGDTGIATTALQSC-SDGWGLTVTLGVPKAKPEVSAHY 307 (378)
T ss_pred HHHHHHHcCCcEEEcccccchHHHHHHHHHhCC-CCCEEEECCCChHHHHHHHHhh-ccCCCEEEEECCcCCCccccccH
Confidence 9999999999888877541 3677778887765 89999999998 5799999999 776 777321 1 1
Q ss_pred cceeeeeEEecccc
Q psy1959 265 SLVNKVLEVSGGKY 278 (296)
Q Consensus 265 ~~~~k~~~i~g~~~ 278 (296)
.++.|+++|.|+..
T Consensus 308 ~~~~~~~~i~g~~~ 321 (378)
T PLN02827 308 GLFLSGRTLKGSLF 321 (378)
T ss_pred HHHhcCceEEeeec
Confidence 35668888888753
No 17
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=100.00 E-value=1.4e-33 Score=259.08 Aligned_cols=239 Identities=21% Similarity=0.226 Sum_probs=192.6
Q ss_pred CcceEEecCCCCC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHc-CCCCC-CCCCCCcCCCceeEEEEEEccC
Q psy1959 12 SSDLLLYNGSGDA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYN-GSGDA-KPTLPLVPGFEFSGTVIEVADT 85 (296)
Q Consensus 12 ~~~~~~~~~~~~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~-g~~~~-~~~~p~~~G~e~~G~V~~v~~~ 85 (296)
.+++++++++++. .|.| +.++ ||||||.++|||++|++.++ |.++. ...+|.++|||++|+|+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~p-~~~~-----evlVkv~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v--- 74 (343)
T PRK09880 4 KTQSCVVAGKKDVAVTEQEIE-WNNN-----GTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--- 74 (343)
T ss_pred cceEEEEecCCceEEEecCCC-CCCC-----eEEEEEEEEEECccccHhhccCCcccccccCCcccCcccEEEEEEe---
Confidence 4678888888876 4554 5677 99999999999999999875 44322 2457999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEecC------------------------------CCCCcccceEeeeCCceEECCCCCC
Q psy1959 86 KSSSTEEDDEEDVLQVGDKVLALNK------------------------------ELLHGFSDQCVVHTNDVFKIPEKMT 135 (296)
Q Consensus 86 ~~~~~~~g~~v~~~~~Gd~V~~~~~------------------------------~~~g~~~~~~~v~~~~~~~iP~~~~ 135 (296)
+ +++|++||||+.... +..|+|+||++++++.++++|++++
T Consensus 75 -------~--v~~~~vGdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~~P~~l~ 145 (343)
T PRK09880 75 -------D--SSGLKEGQTVAINPSKPCGHCKYCLSHNENQCTTMRFFGSAMYFPHVDGGFTRYKVVDTAQCIPYPEKAD 145 (343)
T ss_pred -------c--CccCCCCCEEEECCCCCCcCChhhcCCChhhCCCcceeecccccCCCCCceeeeEEechHHeEECCCCCC
Confidence 3 567999999985310 1359999999999999999999999
Q ss_pred HHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCCcEEEEc
Q psy1959 136 FEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALTF 214 (296)
Q Consensus 136 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~~~~~~~ 214 (296)
+++++ +..++++||+++. .....+|++|+|+|+ |++|++++|+| +.+|+ +|+++++++++++.++++|++.++++
T Consensus 146 ~~~aa-~~~~~~~a~~al~-~~~~~~g~~VlV~G~-G~vG~~aiqla-k~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~ 221 (343)
T PRK09880 146 EKVMA-FAEPLAVAIHAAH-QAGDLQGKRVFVSGV-GPIGCLIVAAV-KTLGAAEIVCADVSPRSLSLAREMGADKLVNP 221 (343)
T ss_pred HHHHH-hhcHHHHHHHHHH-hcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCcEEEEEeCCHHHHHHHHHcCCcEEecC
Confidence 87665 6688999999994 456668999999996 99999999999 67898 69999999999999999999999888
Q ss_pred CCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEe----------ecccceeeeeEEeccc
Q psy1959 215 TNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFT----------NEKSLVNKVLEVSGGK 277 (296)
Q Consensus 215 ~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~----------~~~~~~~k~~~i~g~~ 277 (296)
++ .++.+.. +. ..++|++||++|+ ..+..+++++ +++|++.. +...++.|++++.|++
T Consensus 222 ~~-~~~~~~~-~~--~g~~D~vid~~G~~~~~~~~~~~l-~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~g~~ 290 (343)
T PRK09880 222 QN-DDLDHYK-AE--KGYFDVSFEVSGHPSSINTCLEVT-RAKGVMVQVGMGGAPPEFPMMTLIVKEISLKGSF 290 (343)
T ss_pred Cc-ccHHHHh-cc--CCCCCEEEECCCCHHHHHHHHHHh-hcCCEEEEEccCCCCCccCHHHHHhCCcEEEEEe
Confidence 66 4443322 21 2269999999998 5789999999 78777632 2235667888888876
No 18
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=100.00 E-value=4e-33 Score=258.42 Aligned_cols=247 Identities=22% Similarity=0.262 Sum_probs=206.0
Q ss_pred CcceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCC
Q psy1959 12 SSDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTK 86 (296)
Q Consensus 12 ~~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~ 86 (296)
+|+++++..+++. .|.|+|+++ ||+||+.+++||++|++.+.|..+. ..+|.++|||++|+|+++
T Consensus 2 ~~ka~~~~~~~~~~~l~~~~~p~~~~~-----evlIkv~a~gi~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~v---- 71 (369)
T cd08301 2 TCKAAVAWEAGKPLVIEEVEVAPPQAM-----EVRIKILHTSLCHTDVYFWEAKGQT-PLFPRILGHEAAGIVESV---- 71 (369)
T ss_pred ccEEEEEecCCCCcEEEEeeCCCCCCC-----eEEEEEEEEeeCchhHHHhcCCCCC-CCCCcccccccceEEEEe----
Confidence 6888888876543 577888888 9999999999999999999987652 467899999999999999
Q ss_pred CCCCCCCCCCCCCCCCCEEEEecCC-----------------------------------------------CCCcccce
Q psy1959 87 SSSTEEDDEEDVLQVGDKVLALNKE-----------------------------------------------LLHGFSDQ 119 (296)
Q Consensus 87 ~~~~~~g~~v~~~~~Gd~V~~~~~~-----------------------------------------------~~g~~~~~ 119 (296)
|+++++|++||||+..... ..|+|+||
T Consensus 72 ------G~~v~~~~~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~G~~aey 145 (369)
T cd08301 72 ------GEGVTDLKPGDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFSINGKPIYHFVGTSTFSEY 145 (369)
T ss_pred ------CCCCCccccCCEEEEccCCCCCCCchhcCCCcccCcCcccccccccccCCCccccccCCcceeeeeccccceeE
Confidence 9999999999999975210 13789999
Q ss_pred EeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcc
Q psy1959 120 CVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSED 198 (296)
Q Consensus 120 ~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~ 198 (296)
++++...++++|+++++++++.+++++.+||.++.+..++++|++|+|+|+ |++|++++|+| +.+|+ +|++++++++
T Consensus 146 ~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~-g~vG~~a~q~a-k~~G~~~vi~~~~~~~ 223 (369)
T cd08301 146 TVVHVGCVAKINPEAPLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGL-GAVGLAVAEGA-RIRGASRIIGVDLNPS 223 (369)
T ss_pred EEEecccEEECCCCCCHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCeEEEEcCCHH
Confidence 999999999999999999999999999999998878889999999999986 99999999999 67898 8999999999
Q ss_pred hHHHHHhcCCcEEEEcCCc-hhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccC-ceEEeec----------c-
Q psy1959 199 KTDLIRQKGAWAALTFTNE-KSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWA-ALTFTNE----------K- 264 (296)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~-~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~-g~~~~~~----------~- 264 (296)
+.+.++++|++.++++.+. .++.+.+++.+++ ++|++||++|+ ..+..+++++ +.+ |++.... .
T Consensus 224 ~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~~~-~~d~vid~~G~~~~~~~~~~~~-~~~~g~~v~~g~~~~~~~~~~~~ 301 (369)
T cd08301 224 KFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGG-GVDYSFECTGNIDAMISAFECV-HDGWGVTVLLGVPHKDAVFSTHP 301 (369)
T ss_pred HHHHHHHcCCceEEcccccchhHHHHHHHHhCC-CCCEEEECCCChHHHHHHHHHh-hcCCCEEEEECcCCCCcccccCH
Confidence 9999999999888877541 3566777777765 89999999998 5788899999 664 6663211 0
Q ss_pred cceeeeeEEecccc
Q psy1959 265 SLVNKVLEVSGGKY 278 (296)
Q Consensus 265 ~~~~k~~~i~g~~~ 278 (296)
..+.+++++.|+..
T Consensus 302 ~~~~~~~~i~g~~~ 315 (369)
T cd08301 302 MNLLNGRTLKGTLF 315 (369)
T ss_pred HHHhcCCeEEEEec
Confidence 11346788887653
No 19
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=100.00 E-value=6.5e-33 Score=258.95 Aligned_cols=228 Identities=22% Similarity=0.259 Sum_probs=186.7
Q ss_pred CcceEEecCCCCC----CCCCCCC-------CCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEE
Q psy1959 12 SSDLLLYNGSGDA----KPTLPLV-------PGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVI 80 (296)
Q Consensus 12 ~~~~~~~~~~~~~----~~~p~~~-------~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~ 80 (296)
.|+++++.++++. .|.|.|+ ++ ||||||.++|||++|++.+.|.+. ..+|.++|||++|+|+
T Consensus 2 ~mka~v~~~~~~~~~~e~~~P~~~~~~~~~~~~-----eVlVkv~a~gIcgsD~~~~~g~~~--~~~p~i~GhE~~G~V~ 74 (393)
T TIGR02819 2 GNRGVVYLGPGKVEVQDIDYPKLELPDGRKCEH-----GVILKVVTTNICGSDQHMVRGRTT--APTGLVLGHEITGEVI 74 (393)
T ss_pred CceEEEEecCCceeEEeccCCcccCCCccCCCC-----eEEEEEEEeeecHHHHHHHCCCCC--CCCCccccceeEEEEE
Confidence 5889999888765 5555553 57 999999999999999999988653 3468999999999999
Q ss_pred EEccCCCCCCCCCCCCCCCCCCCEEEEecC-----------------------------------CCCCcccceEeeeCC
Q psy1959 81 EVADTKSSSTEEDDEEDVLQVGDKVLALNK-----------------------------------ELLHGFSDQCVVHTN 125 (296)
Q Consensus 81 ~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~-----------------------------------~~~g~~~~~~~v~~~ 125 (296)
++ |++|++|++||||+.... .+.|+|+||+++|..
T Consensus 75 ~v----------G~~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~ 144 (393)
T TIGR02819 75 EK----------GRDVEFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMGGWVGGQSEYVMVPYA 144 (393)
T ss_pred EE----------cCccccccCCCEEEEecccCCCCChHHHCcCcccCcCCCCCCccceecccccCCCCCceEEEEEechh
Confidence 99 999999999999976310 125899999999964
Q ss_pred --ceEECCCCCCH----HHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEE-EEEeCCcc
Q psy1959 126 --DVFKIPEKMTF----EHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKV-IGVCNSED 198 (296)
Q Consensus 126 --~~~~iP~~~~~----~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~V-i~~~~~~~ 198 (296)
.++++|++++. ..++++..++.+||+++ ...++++|++|+|.|+ |++|++++|+| +.+|+++ ++++++++
T Consensus 145 ~~~l~~vP~~~~~~~~~~~~a~l~~~~~ta~~a~-~~~~~~~g~~VlV~G~-G~iG~~aiqlA-k~~Ga~~vi~~d~~~~ 221 (393)
T TIGR02819 145 DFNLLKFPDRDQALEKIRDLTMLSDIFPTGYHGA-VTAGVGPGSTVYIAGA-GPVGLAAAASA-QLLGAAVVIVGDLNPA 221 (393)
T ss_pred hCceEECCCcccccccccceeeeccHHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCceEEEeCCCHH
Confidence 69999998753 34567888999999998 4688999999999775 99999999999 6789974 44567788
Q ss_pred hHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCc---------------cHHHHHHHhhccCceEEe
Q psy1959 199 KTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE---------------DKTDLIRQKGAWAALTFT 261 (296)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~---------------~~~~~~~~lg~~~g~~~~ 261 (296)
|+++++++|++ .++.....++.+.+.+.++++++|++||++|.+ .++.+++++ +++|++.+
T Consensus 222 r~~~a~~~Ga~-~v~~~~~~~~~~~v~~~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~i~~ 297 (393)
T TIGR02819 222 RLAQARSFGCE-TVDLSKDATLPEQIEQILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVT-RVGGAIGI 297 (393)
T ss_pred HHHHHHHcCCe-EEecCCcccHHHHHHHHcCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHh-hCCCEEEE
Confidence 99999999996 454433246667788888777899999999984 699999999 88887743
No 20
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=100.00 E-value=1.9e-32 Score=248.61 Aligned_cols=244 Identities=23% Similarity=0.275 Sum_probs=209.4
Q ss_pred cceEEecCCCC--------CCCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEcc
Q psy1959 13 SDLLLYNGSGD--------AKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVAD 84 (296)
Q Consensus 13 ~~~~~~~~~~~--------~~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~ 84 (296)
|+++++.+++. ..|.|.+.++ ||+|||.++++|+.|+..+.|.++....+|.++|||++|+|+++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~p~~~~~-----~v~i~v~~~~~~~~d~~~~~g~~~~~~~~p~~~G~e~~G~V~~~-- 73 (324)
T cd08292 1 MRAAVHTQFGDPADVLEIGEVPKPTPGAG-----EVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVGVVDAV-- 73 (324)
T ss_pred CeeEEEccCCChhHeEEEeecCCCCCCCC-----eEEEEEEEccCCHHHHHHhcCcCCCCCCCCCCCCcceEEEEEEe--
Confidence 57777776553 1567777888 99999999999999999998877544556889999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcE
Q psy1959 85 TKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQT 164 (296)
Q Consensus 85 ~~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~ 164 (296)
|+++..+++||+|++... .|+|++|++++...++++|+++++++++.++..+.+||+++ ...++++|++
T Consensus 74 --------G~~v~~~~~Gd~V~~~~~--~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~~-~~~~~~~g~~ 142 (324)
T cd08292 74 --------GEGVKGLQVGQRVAVAPV--HGTWAEYFVAPADGLVPLPDGISDEVAAQLIAMPLSALMLL-DFLGVKPGQW 142 (324)
T ss_pred --------CCCCCCCCCCCEEEeccC--CCcceeEEEEchHHeEECCCCCCHHHhhhccccHHHHHHHH-HhhCCCCCCE
Confidence 999999999999999863 48999999999999999999999999999988999999998 5689999999
Q ss_pred EEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCcc
Q psy1959 165 VLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGED 244 (296)
Q Consensus 165 vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~ 244 (296)
|+|+|++|.+|++++++| +.+|+++++++.++++.+.++++|++.+++.++ .++.+.+.+.+.++++|++||++|+..
T Consensus 143 vlI~g~~g~ig~~~~~~a-~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~i~~~~~~~~~d~v~d~~g~~~ 220 (324)
T cd08292 143 LIQNAAGGAVGKLVAMLA-AARGINVINLVRRDAGVAELRALGIGPVVSTEQ-PGWQDKVREAAGGAPISVALDSVGGKL 220 (324)
T ss_pred EEEcccccHHHHHHHHHH-HHCCCeEEEEecCHHHHHHHHhcCCCEEEcCCC-chHHHHHHHHhCCCCCcEEEECCCChh
Confidence 999999999999999999 678999999999999999998899888888766 678888888888889999999999988
Q ss_pred HHHHHHHhhccCceEEeec-----------ccceeeeeEEeccc
Q psy1959 245 KTDLIRQKGAWAALTFTNE-----------KSLVNKVLEVSGGK 277 (296)
Q Consensus 245 ~~~~~~~lg~~~g~~~~~~-----------~~~~~k~~~i~g~~ 277 (296)
...+++++ +.+|++..-. ..++.+++++.+..
T Consensus 221 ~~~~~~~l-~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (324)
T cd08292 221 AGELLSLL-GEGGTLVSFGSMSGEPMQISSGDLIFKQATVRGFW 263 (324)
T ss_pred HHHHHHhh-cCCcEEEEEecCCCCCCcCCHHHHhhCCCEEEEEE
Confidence 89999999 7777764321 11355677777665
No 21
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=100.00 E-value=1e-32 Score=253.68 Aligned_cols=243 Identities=27% Similarity=0.350 Sum_probs=191.9
Q ss_pred cceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCC-cCCCceeEEEEEEccCC
Q psy1959 13 SDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPL-VPGFEFSGTVIEVADTK 86 (296)
Q Consensus 13 ~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~-~~G~e~~G~V~~v~~~~ 86 (296)
|++++++.++.. .+.|.+.|+ ||+|||.++|||++|++.++|..+.. ..|. ++|||++|+|+++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~p~-----~vlVkv~~~gICGSDlh~~~g~~~~~-~~~~~i~GHE~~G~V~ev---- 70 (350)
T COG1063 1 MKAAVVYVGGGDVRLEEPPPPIPGPG-----DVLIRVTATGICGSDLHIYRGGEPFV-PPGDIILGHEFVGEVVEV---- 70 (350)
T ss_pred CceeEEEecCCccccccCCCCCCCCC-----eEEEEEEEEeEchhhhhhccCCCCCC-CCCCcccCccceEEEEEe----
Confidence 455566655533 222235566 99999999999999999999976553 3344 9999999999999
Q ss_pred CCCCCCCCCCCCCCCCCEEEEecC------------------------------CCCCcccceEeeeCCceEE-CCCCCC
Q psy1959 87 SSSTEEDDEEDVLQVGDKVLALNK------------------------------ELLHGFSDQCVVHTNDVFK-IPEKMT 135 (296)
Q Consensus 87 ~~~~~~g~~v~~~~~Gd~V~~~~~------------------------------~~~g~~~~~~~v~~~~~~~-iP~~~~ 135 (296)
| .+..+++||||+..+. +.+|+|+||+++|.+++++ +|+++
T Consensus 71 ------G-~~~~~~~GdrVvv~~~~~Cg~C~~C~~G~~~~C~~~~~~g~~~~~~~~~G~~aEyv~vp~~~~~~~~pd~~- 142 (350)
T COG1063 71 ------G-VVRGFKVGDRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGGIDGGFAEYVRVPADFNLAKLPDGI- 142 (350)
T ss_pred ------c-cccCCCCCCEEEECCCcCCCCChhHhCcCcccCCCccccccccccCCCCCceEEEEEeccccCeecCCCCC-
Confidence 9 6778999999996421 1358999999999765554 58888
Q ss_pred HHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHh-cCCcEEEE
Q psy1959 136 FEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQ-KGAWAALT 213 (296)
Q Consensus 136 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~-~g~~~~~~ 213 (296)
..++|+|.+++.++|++.-.....+++++|+|+|+ |++|+++++++ +..|+ +|++++.+++|++++++ .+++.+.+
T Consensus 143 ~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~Ga-GpIGLla~~~a-~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~ 220 (350)
T COG1063 143 DEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGA-GPIGLLAIALA-KLLGASVVIVVDRSPERLELAKEAGGADVVVN 220 (350)
T ss_pred ChhhhhhcChhhhhhhhhhhccCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCceEEEeCCCHHHHHHHHHhCCCeEeec
Confidence 55666699999999888545555666669999997 99999999999 66787 89999999999999999 56655555
Q ss_pred cCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE-----------eecccceeeeeEEeccc
Q psy1959 214 FTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF-----------TNEKSLVNKVLEVSGGK 277 (296)
Q Consensus 214 ~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~-----------~~~~~~~~k~~~i~g~~ 277 (296)
... .+....+.+.+++.++|++|||+|. +.+..+++++ +++|.+. ++...++.|++++.|++
T Consensus 221 ~~~-~~~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~-r~gG~v~~vGv~~~~~~~~~~~~~~~kel~l~gs~ 294 (350)
T COG1063 221 PSE-DDAGAEILELTGGRGADVVIEAVGSPPALDQALEAL-RPGGTVVVVGVYGGEDIPLPAGLVVSKELTLRGSL 294 (350)
T ss_pred Ccc-ccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHh-cCCCEEEEEeccCCccCccCHHHHHhcccEEEecc
Confidence 544 3667778888888899999999998 5789999999 7777661 33457888999999984
No 22
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=100.00 E-value=2e-32 Score=253.07 Aligned_cols=228 Identities=22% Similarity=0.230 Sum_probs=187.0
Q ss_pred CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCE
Q psy1959 25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDK 104 (296)
Q Consensus 25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~ 104 (296)
.|.|.|.++ ||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++ |++++.|++||+
T Consensus 30 ~~~p~~~~~-----eVlV~v~~~gic~sD~~~~~g~~~~-~~~p~i~GhE~~G~V~~v----------G~~v~~~~vGdr 93 (360)
T PLN02586 30 FSRRENGDE-----DVTVKILYCGVCHSDLHTIKNEWGF-TRYPIVPGHEIVGIVTKL----------GKNVKKFKEGDR 93 (360)
T ss_pred ecCCCCCCC-----eEEEEEEEecCChhhHhhhcCCcCC-CCCCccCCcceeEEEEEE----------CCCCCccCCCCE
Confidence 567778888 9999999999999999999886643 357899999999999999 999999999999
Q ss_pred EEEecC---------------------------------CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHH
Q psy1959 105 VLALNK---------------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQI 151 (296)
Q Consensus 105 V~~~~~---------------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~ 151 (296)
|+.... ..+|+|+||+++|++.++++|++++++++++++..+.|||+
T Consensus 94 V~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~ls~~~aa~l~~~~~ta~~ 173 (360)
T PLN02586 94 VGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTKNYGGYSDMIVVDQHFVLRFPDNLPLDAGAPLLCAGITVYS 173 (360)
T ss_pred EEEccccCcCCCCccccCCCcccCCCccccccccccCCCcCCCccceEEEEchHHeeeCCCCCCHHHhhhhhcchHHHHH
Confidence 974210 11489999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchH-HHHHhcCCcEEEEcCCchhHHHHHHHHhCC
Q psy1959 152 VFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKT-DLIRQKGAWAALTFTNEKSLVNKVLEVSGG 230 (296)
Q Consensus 152 ~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~ 230 (296)
++.+...+++|++|+|.|+ |++|++++|+| +.+|++|++++.++++. +.++++|++.+++..+ . +.+.+.++
T Consensus 174 al~~~~~~~~g~~VlV~G~-G~vG~~avq~A-k~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~-~---~~~~~~~~- 246 (360)
T PLN02586 174 PMKYYGMTEPGKHLGVAGL-GGLGHVAVKIG-KAFGLKVTVISSSSNKEDEAINRLGADSFLVSTD-P---EKMKAAIG- 246 (360)
T ss_pred HHHHhcccCCCCEEEEECC-CHHHHHHHHHH-HHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCC-H---HHHHhhcC-
Confidence 9876677789999999886 99999999999 67899998888776664 4557899988887654 2 24444443
Q ss_pred CcccEEEECCCC-ccHHHHHHHhhccCceEEe----------ecccceeeeeEEeccc
Q psy1959 231 KYANVVFEAVGG-EDKTDLIRQKGAWAALTFT----------NEKSLVNKVLEVSGGK 277 (296)
Q Consensus 231 ~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~----------~~~~~~~k~~~i~g~~ 277 (296)
++|++||++|+ ..+..+++++ +++|++.. +...++.+++.+.|++
T Consensus 247 -~~D~vid~~g~~~~~~~~~~~l-~~~G~iv~vG~~~~~~~~~~~~~~~~~~~i~g~~ 302 (360)
T PLN02586 247 -TMDYIIDTVSAVHALGPLLGLL-KVNGKLITLGLPEKPLELPIFPLVLGRKLVGGSD 302 (360)
T ss_pred -CCCEEEECCCCHHHHHHHHHHh-cCCcEEEEeCCCCCCCccCHHHHHhCCeEEEEcC
Confidence 69999999998 5789999999 77777632 1223455666676665
No 23
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=100.00 E-value=3.6e-32 Score=251.79 Aligned_cols=227 Identities=26% Similarity=0.300 Sum_probs=194.1
Q ss_pred CcceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCC
Q psy1959 12 SSDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTK 86 (296)
Q Consensus 12 ~~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~ 86 (296)
.++++++.+.++. .|.|.|.++ ||+|||.++++|++|++.+.|... ..+|.++|||++|+|+++
T Consensus 2 ~~ka~~~~~~~~~~~~~~~~~p~~~~~-----evlVkv~~~gi~~sD~~~~~g~~~--~~~p~i~G~e~~G~V~~v---- 70 (365)
T cd08277 2 KCKAAVAWEAGKPLVIEEIEVAPPKAN-----EVRIKMLATSVCHTDILAIEGFKA--TLFPVILGHEGAGIVESV---- 70 (365)
T ss_pred ccEEEEEccCCCCcEEEEEECCCCCCC-----EEEEEEEEEeechhhHHHhcCCCC--CCCCeecccceeEEEEee----
Confidence 4677777765542 577788888 999999999999999999988654 457899999999999999
Q ss_pred CCCCCCCCCCCCCCCCCEEEEecCC---------------------------------------------CCCcccceEe
Q psy1959 87 SSSTEEDDEEDVLQVGDKVLALNKE---------------------------------------------LLHGFSDQCV 121 (296)
Q Consensus 87 ~~~~~~g~~v~~~~~Gd~V~~~~~~---------------------------------------------~~g~~~~~~~ 121 (296)
|++++++++||+|++.... ..|+|+||++
T Consensus 71 ------G~~v~~~~~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~ae~~~ 144 (365)
T cd08277 71 ------GEGVTNLKPGDKVIPLFIGQCGECSNCRSGKTNLCQKYRANESGLMPDGTSRFTCKGKKIYHFLGTSTFSQYTV 144 (365)
T ss_pred ------CCCCccCCCCCEEEECCCCCCCCCchhcCcCcccCcCccccccccccCCccccccCCcccccccccccceeeEE
Confidence 9999999999999875210 1378999999
Q ss_pred eeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchH
Q psy1959 122 VHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKT 200 (296)
Q Consensus 122 v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~ 200 (296)
++.+.++++|+++++++++.+.+++.+||+++.+.+++++|++|+|+|+ |++|++++|+| +.+|+ +|+++++++++.
T Consensus 145 v~~~~~~~lP~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~vG~~~~~~a-~~~G~~~Vi~~~~~~~~~ 222 (365)
T cd08277 145 VDENYVAKIDPAAPLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGL-GAVGLSAIMGA-KIAGASRIIGVDINEDKF 222 (365)
T ss_pred EchhheEECCCCCCHHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCeEEEEeCCHHHH
Confidence 9999999999999999999999999999998877889999999999985 99999999999 67899 799999999999
Q ss_pred HHHHhcCCcEEEEcCCc-hhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccC-ceE
Q psy1959 201 DLIRQKGAWAALTFTNE-KSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWA-ALT 259 (296)
Q Consensus 201 ~~~~~~g~~~~~~~~~~-~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~-g~~ 259 (296)
+.++++|++.+++..+. .++.+.+++.++ .++|++||++|+ ..+..+++++ +.+ |++
T Consensus 223 ~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~-~g~d~vid~~g~~~~~~~~~~~l-~~~~G~~ 282 (365)
T cd08277 223 EKAKEFGATDFINPKDSDKPVSEVIREMTG-GGVDYSFECTGNADLMNEALEST-KLGWGVS 282 (365)
T ss_pred HHHHHcCCCcEeccccccchHHHHHHHHhC-CCCCEEEECCCChHHHHHHHHhc-ccCCCEE
Confidence 99999999888876541 245667777776 589999999997 6788999999 553 655
No 24
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=100.00 E-value=5.1e-32 Score=249.25 Aligned_cols=244 Identities=29% Similarity=0.353 Sum_probs=203.5
Q ss_pred cceEEecCCCCC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCC-CC---------CCCCCCcCCCceeEE
Q psy1959 13 SDLLLYNGSGDA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSG-DA---------KPTLPLVPGFEFSGT 78 (296)
Q Consensus 13 ~~~~~~~~~~~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~-~~---------~~~~p~~~G~e~~G~ 78 (296)
||++++.++++. .|.|.|.++ ||+||+.++++|++|+..+.+.. .. ...+|.++|||++|+
T Consensus 1 mka~~~~~~~~l~~~~~~~p~~~~~-----evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~ 75 (351)
T cd08233 1 MKAARYHGRKDIRVEEVPEPPVKPG-----EVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGV 75 (351)
T ss_pred CceEEEecCCceEEEeccCCCCCCC-----eEEEEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEE
Confidence 677888776655 677788888 99999999999999998775421 11 123688999999999
Q ss_pred EEEEccCCCCCCCCCCCCCCCCCCCEEEEecC--------------------------CCCCcccceEeeeCCceEECCC
Q psy1959 79 VIEVADTKSSSTEEDDEEDVLQVGDKVLALNK--------------------------ELLHGFSDQCVVHTNDVFKIPE 132 (296)
Q Consensus 79 V~~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~--------------------------~~~g~~~~~~~v~~~~~~~iP~ 132 (296)
|+++ |++++.+++||+|++... ...|+|++|+.++...++++|+
T Consensus 76 V~~v----------G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~ 145 (351)
T cd08233 76 VVEV----------GSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGFIGLGGGGGGFAEYVVVPAYHVHKLPD 145 (351)
T ss_pred EEEe----------CCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCCceeccCCCCCceeeEEEechHHeEECcC
Confidence 9999 999999999999987321 0148999999999999999999
Q ss_pred CCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCCcEE
Q psy1959 133 KMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWAA 211 (296)
Q Consensus 133 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~~~~ 211 (296)
++++++++.+ .++.+||+++ ..+++++|++|+|+|+ |++|++++|+| +..|+ +|+++++++++.++++++|++.+
T Consensus 146 ~~~~~~aa~~-~~~~ta~~~l-~~~~~~~g~~vlI~g~-g~vG~~a~q~a-~~~G~~~v~~~~~~~~~~~~~~~~ga~~~ 221 (351)
T cd08233 146 NVPLEEAALV-EPLAVAWHAV-RRSGFKPGDTALVLGA-GPIGLLTILAL-KAAGASKIIVSEPSEARRELAEELGATIV 221 (351)
T ss_pred CCCHHHhhhc-cHHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCEEEEECCCHHHHHHHHHhCCCEE
Confidence 9999998755 7889999999 7889999999999986 99999999999 67899 89999999999999999999998
Q ss_pred EEcCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEe----------ecccceeeeeEEeccc
Q psy1959 212 LTFTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFT----------NEKSLVNKVLEVSGGK 277 (296)
Q Consensus 212 ~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~----------~~~~~~~k~~~i~g~~ 277 (296)
+++++ .++.+.+++.++++++|++||++|+ ..+..+++++ +.+|.+.. +...++.|+++|.|..
T Consensus 222 i~~~~-~~~~~~l~~~~~~~~~d~vid~~g~~~~~~~~~~~l-~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~g~~ 296 (351)
T cd08233 222 LDPTE-VDVVAEVRKLTGGGGVDVSFDCAGVQATLDTAIDAL-RPRGTAVNVAIWEKPISFNPNDLVLKEKTLTGSI 296 (351)
T ss_pred ECCCc-cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhc-cCCCEEEEEccCCCCCccCHHHHHhhCcEEEEEe
Confidence 88876 6788888888877789999999997 6889999999 77776632 2224556778887764
No 25
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=100.00 E-value=2.2e-32 Score=251.01 Aligned_cols=232 Identities=20% Similarity=0.228 Sum_probs=183.1
Q ss_pred cceEEecCCCCC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCC---CCCCCCcCCCceeEEEEEEccC
Q psy1959 13 SDLLLYNGSGDA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDA---KPTLPLVPGFEFSGTVIEVADT 85 (296)
Q Consensus 13 ~~~~~~~~~~~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~---~~~~p~~~G~e~~G~V~~v~~~ 85 (296)
.++++++++++. .|.| ++++ ||+|||.++|||++|++.+.|.+.. ...+|.++|||++|+|+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~P-~~~~-----eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~--- 73 (341)
T cd08237 3 NQVYRLVRPKFFEVTYEEEN-LRED-----WVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSD--- 73 (341)
T ss_pred ccceEEeccceEEEeecCCC-CCCC-----eEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEee---
Confidence 356777777765 5666 3777 9999999999999999999987532 1357999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEecC----------------------CCCCcccceEeeeCCceEECCCCCCHHHHhhhc
Q psy1959 86 KSSSTEEDDEEDVLQVGDKVLALNK----------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLA 143 (296)
Q Consensus 86 ~~~~~~~g~~v~~~~~Gd~V~~~~~----------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~ 143 (296)
|.+ .|++||||+..+. +..|+|+||+++|++.++++|++++++++| +.
T Consensus 74 -------g~~--~~~vGdrV~~~~~~~~~~~~~~~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~vP~~l~~~~aa-~~ 143 (341)
T cd08237 74 -------PTG--TYKVGTKVVMVPNTPVEKDEIIPENYLPSSRFRSSGYDGFMQDYVFLPPDRLVKLPDNVDPEVAA-FT 143 (341)
T ss_pred -------CCC--ccCCCCEEEECCCCCchhcccchhccCCCcceeEecCCCceEEEEEEchHHeEECCCCCChHHhh-hh
Confidence 764 6999999986431 124899999999999999999999998876 66
Q ss_pred cHHHHHHHHHHHH--cCCCCCcEEEEEcCCCcHHHHHHHHHHHhCC-CEEEEEeCCcchHHHHHhcCCcEEEEcCCchhH
Q psy1959 144 DSYSTAQIVFSRH--AKLKEKQTVLVTAAGGGLGLAAVDMATKIYK-AKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSL 220 (296)
Q Consensus 144 ~~~~ta~~~l~~~--~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g-~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 220 (296)
.+++++|+++.+. ..+++|++|+|+|+ |++|++++|+|++..| ++|++++++++|++++++.+.+..+ .++
T Consensus 144 ~~~~~a~~a~~~~~~~~~~~g~~VlV~G~-G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~-----~~~ 217 (341)
T cd08237 144 ELVSVGVHAISRFEQIAHKDRNVIGVWGD-GNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLI-----DDI 217 (341)
T ss_pred chHHHHHHHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeeh-----hhh
Confidence 7999999998543 45689999999996 9999999999954454 5899999999999999876654211 111
Q ss_pred HHHHHHHhCCCcccEEEECCCC----ccHHHHHHHhhccCceEEe----------ecccceeeeeEEeccc
Q psy1959 221 VNKVLEVSGGKYANVVFEAVGG----EDKTDLIRQKGAWAALTFT----------NEKSLVNKVLEVSGGK 277 (296)
Q Consensus 221 ~~~i~~~~~~~g~d~vld~~g~----~~~~~~~~~lg~~~g~~~~----------~~~~~~~k~~~i~g~~ 277 (296)
. ...++|++||++|+ ..+..+++++ +++|++.+ +...++.|+++|.|++
T Consensus 218 ~-------~~~g~d~viD~~G~~~~~~~~~~~~~~l-~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~g~~ 280 (341)
T cd08237 218 P-------EDLAVDHAFECVGGRGSQSAINQIIDYI-RPQGTIGLMGVSEYPVPINTRMVLEKGLTLVGSS 280 (341)
T ss_pred h-------hccCCcEEEECCCCCccHHHHHHHHHhC-cCCcEEEEEeecCCCcccCHHHHhhCceEEEEec
Confidence 1 12369999999995 3688999999 88877632 2224677889999875
No 26
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=100.00 E-value=1.2e-31 Score=245.67 Aligned_cols=233 Identities=21% Similarity=0.240 Sum_probs=192.5
Q ss_pred EeecccCCcceEEecCCCCCCCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCce--eEEEEEE
Q psy1959 5 IQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEF--SGTVIEV 82 (296)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~--~G~V~~v 82 (296)
......++.+.+.+....-..+.|+|+++ ||||||.|++||+.|+....|.+......|+++|+++ .|.+..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~p~p~~~-----~vlv~v~~~~inp~d~~~~~g~~~~~~~~p~~~g~~~~g~~~~~~v 84 (338)
T cd08295 10 AYVTGFPKESDLELRTTKLTLKVPPGGSG-----DVLVKNLYLSCDPYMRGRMKGHDDSLYLPPFKPGEVITGYGVAKVV 84 (338)
T ss_pred cCCCCCCCccceEEEEecCCcCCCCCCCC-----eEEEEEEEEeeCHHHHHhhccCCccccCCCcCCCCeEeccEEEEEE
Confidence 33444455555555533333456888999 9999999999999999999885443234578899865 4566668
Q ss_pred ccCCCCCCCCCCCCCCCCCCCEEEEecCCCCCcccceEeeeC-CceEECC-CCCCHH-HHhhhccHHHHHHHHHHHHcCC
Q psy1959 83 ADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHT-NDVFKIP-EKMTFE-HAASLADSYSTAQIVFSRHAKL 159 (296)
Q Consensus 83 ~~~~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~-~~~~~iP-~~~~~~-~aa~l~~~~~ta~~~l~~~~~~ 159 (296)
|+++++|++||+|+++ |+|+||+++|+ ..++++| +++++. +++++++++.|||+++.+.+++
T Consensus 85 ----------~~~v~~~~vGd~V~~~-----g~~aey~~v~~~~~~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~ 149 (338)
T cd08295 85 ----------DSGNPDFKVGDLVWGF-----TGWEEYSLIPRGQDLRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKP 149 (338)
T ss_pred ----------ecCCCCCCCCCEEEec-----CCceeEEEecchhceeecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCC
Confidence 7788889999999875 67999999999 7999995 678886 7888999999999999888999
Q ss_pred CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCCcEEEEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959 160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAWAALTFTNEKSLVNKVLEVSGGKYANVVFE 238 (296)
Q Consensus 160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld 238 (296)
++|++|+|+|++|++|++++|+| +.+|++|+++++++++.+++++ +|++.++++.+..++.+.+++.++ .++|++||
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlA-k~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~-~gvd~v~d 227 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLA-KLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFP-NGIDIYFD 227 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCC-CCcEEEEE
Confidence 99999999999999999999999 6789999999999999999998 999988887542467777777765 68999999
Q ss_pred CCCCccHHHHHHHhhccCceEE
Q psy1959 239 AVGGEDKTDLIRQKGAWAALTF 260 (296)
Q Consensus 239 ~~g~~~~~~~~~~lg~~~g~~~ 260 (296)
++|+..+..+++++ +.+|++.
T Consensus 228 ~~g~~~~~~~~~~l-~~~G~iv 248 (338)
T cd08295 228 NVGGKMLDAVLLNM-NLHGRIA 248 (338)
T ss_pred CCCHHHHHHHHHHh-ccCcEEE
Confidence 99998899999999 7777764
No 27
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=100.00 E-value=8.2e-32 Score=250.20 Aligned_cols=229 Identities=22% Similarity=0.224 Sum_probs=188.3
Q ss_pred CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCE
Q psy1959 25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDK 104 (296)
Q Consensus 25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~ 104 (296)
.+.|.|.++ ||+|||.+++||++|++.+.|.+.. ..+|.++|||++|+|+++ |+++.+|++|||
T Consensus 24 ~~~p~~~~~-----eVlVkV~a~gic~sD~~~~~G~~~~-~~~p~i~GhE~aG~Vv~v----------G~~v~~~~vGdr 87 (375)
T PLN02178 24 FSRRENGEN-----DVTVKILFCGVCHSDLHTIKNHWGF-SRYPIIPGHEIVGIATKV----------GKNVTKFKEGDR 87 (375)
T ss_pred ecCCCCCCC-----eEEEEEEEEcCchHHHHHhcCCCCC-CCCCcccCceeeEEEEEE----------CCCCCccCCCCE
Confidence 566778888 9999999999999999999887643 356899999999999999 999999999999
Q ss_pred EEEec----C-----------------------------CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHH
Q psy1959 105 VLALN----K-----------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQI 151 (296)
Q Consensus 105 V~~~~----~-----------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~ 151 (296)
|+... . ...|+|+||+++|++.++++|+++++++++++.+++.++|+
T Consensus 88 V~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~ls~~~aa~l~~~~~ta~~ 167 (375)
T PLN02178 88 VGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYS 167 (375)
T ss_pred EEEcCccCCCCCChhHhCcchhcCCCccccccccccCCCcCCCccccEEEEchHHeEECCCCCCHHHcchhhccchHHHH
Confidence 97421 0 11589999999999999999999999999999999999999
Q ss_pred HHHHHcC-CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch-HHHHHhcCCcEEEEcCCchhHHHHHHHHhC
Q psy1959 152 VFSRHAK-LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK-TDLIRQKGAWAALTFTNEKSLVNKVLEVSG 229 (296)
Q Consensus 152 ~l~~~~~-~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~ 229 (296)
++..... .++|++|+|.|+ |++|++++|+| +.+|++|++++.++++ .+.++++|++.++++.+ . +.+.+.++
T Consensus 168 al~~~~~~~~~g~~VlV~G~-G~vG~~avq~A-k~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~-~---~~v~~~~~ 241 (375)
T PLN02178 168 PMKYYGMTKESGKRLGVNGL-GGLGHIAVKIG-KAFGLRVTVISRSSEKEREAIDRLGADSFLVTTD-S---QKMKEAVG 241 (375)
T ss_pred HHHHhCCCCCCCCEEEEEcc-cHHHHHHHHHH-HHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcC-H---HHHHHhhC
Confidence 9855433 368999999996 99999999999 6789999998876554 67888999988887654 2 34555543
Q ss_pred CCcccEEEECCCCc-cHHHHHHHhhccCceEEe----------ecccceeeeeEEecccc
Q psy1959 230 GKYANVVFEAVGGE-DKTDLIRQKGAWAALTFT----------NEKSLVNKVLEVSGGKY 278 (296)
Q Consensus 230 ~~g~d~vld~~g~~-~~~~~~~~lg~~~g~~~~----------~~~~~~~k~~~i~g~~~ 278 (296)
++|++||++|.. .+..+++++ +++|++.. +...++.|+++|.|++.
T Consensus 242 --~~D~vid~~G~~~~~~~~~~~l-~~~G~iv~vG~~~~~~~~~~~~~~~~~~~i~g~~~ 298 (375)
T PLN02178 242 --TMDFIIDTVSAEHALLPLFSLL-KVSGKLVALGLPEKPLDLPIFPLVLGRKMVGGSQI 298 (375)
T ss_pred --CCcEEEECCCcHHHHHHHHHhh-cCCCEEEEEccCCCCCccCHHHHHhCCeEEEEeCc
Confidence 699999999985 789999999 77776632 22345678888888763
No 28
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=100.00 E-value=7.9e-32 Score=248.05 Aligned_cols=233 Identities=21% Similarity=0.280 Sum_probs=193.5
Q ss_pred CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCE
Q psy1959 25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDK 104 (296)
Q Consensus 25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~ 104 (296)
.|.|.|.++ ||+|||.++++|++|++.+.+.+.....+|.++|||++|+|+++ |+++..+ +||+
T Consensus 16 ~p~P~~~~~-----evlVrv~~~gic~sD~~~~~~~~~~~~~~p~i~GhE~~G~V~~v----------G~~v~~~-~Gdr 79 (349)
T TIGR03201 16 VEIPELGAG-----DVVVKVAGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRVIQA----------GAGAASW-IGKA 79 (349)
T ss_pred ccCCCCCCC-----eEEEEEEEEeecccchHHHcCCCCccCCCCeeccccceEEEEEe----------CCCcCCC-CCCE
Confidence 677888889 99999999999999999875433222456899999999999999 9998877 9999
Q ss_pred EEEecC-------------------------CCCCcccceEeeeCCceEECCC------CCCHHHHhhhccHHHHHHHHH
Q psy1959 105 VLALNK-------------------------ELLHGFSDQCVVHTNDVFKIPE------KMTFEHAASLADSYSTAQIVF 153 (296)
Q Consensus 105 V~~~~~-------------------------~~~g~~~~~~~v~~~~~~~iP~------~~~~~~aa~l~~~~~ta~~~l 153 (296)
|+.... +..|+|+||+.++.+.++++|+ ++++++++.++.++.++|+++
T Consensus 80 V~~~~~~~cg~c~~c~~g~~~~c~~~~~~g~~~~G~~ae~~~v~~~~~~~ip~~~~~~~~~~~~~~a~~~~~~~ta~~a~ 159 (349)
T TIGR03201 80 VIVPAVIPCGECELCKTGRGTICRAQKMPGNDMQGGFASHIVVPAKGLCVVDEARLAAAGLPLEHVSVVADAVTTPYQAA 159 (349)
T ss_pred EEECCCCCCCCChhhhCcCcccCCCCCccCcCCCCcccceEEechHHeEECCcccccccCCCHHHhhhhcchHHHHHHHH
Confidence 986210 1259999999999999999999 899999999999999999998
Q ss_pred HHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCc--hhHHHHHHHHhCCC
Q psy1959 154 SRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNE--KSLVNKVLEVSGGK 231 (296)
Q Consensus 154 ~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~i~~~~~~~ 231 (296)
. ..++++|++|+|+|+ |++|++++|+| +..|++|++++++++++++++++|++.++++.+. .++.+.+.+.++++
T Consensus 160 ~-~~~~~~g~~VlV~G~-G~vG~~a~~~a-~~~G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~ 236 (349)
T TIGR03201 160 V-QAGLKKGDLVIVIGA-GGVGGYMVQTA-KAMGAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKAR 236 (349)
T ss_pred H-hcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccC
Confidence 5 588999999999998 99999999999 6689999999999999999999999888877542 35677778888777
Q ss_pred ccc----EEEECCCC-ccHHHHHHHhhccCceEEee----------cccceeeeeEEeccc
Q psy1959 232 YAN----VVFEAVGG-EDKTDLIRQKGAWAALTFTN----------EKSLVNKVLEVSGGK 277 (296)
Q Consensus 232 g~d----~vld~~g~-~~~~~~~~~lg~~~g~~~~~----------~~~~~~k~~~i~g~~ 277 (296)
++| ++|||+|+ ..+..+++++ +.+|++.+- ...++.+.+++.|++
T Consensus 237 g~d~~~d~v~d~~g~~~~~~~~~~~l-~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~g~~ 296 (349)
T TIGR03201 237 GLRSTGWKIFECSGSKPGQESALSLL-SHGGTLVVVGYTMAKTEYRLSNLMAFHARALGNW 296 (349)
T ss_pred CCCCCcCEEEECCCChHHHHHHHHHH-hcCCeEEEECcCCCCcccCHHHHhhcccEEEEEe
Confidence 886 89999998 5678899999 777776321 223445566777654
No 29
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=100.00 E-value=6e-32 Score=249.35 Aligned_cols=238 Identities=19% Similarity=0.217 Sum_probs=184.9
Q ss_pred cceEEecCCCC-C----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCC--CCCCcCCCceeEEEEEEccC
Q psy1959 13 SDLLLYNGSGD-A----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKP--TLPLVPGFEFSGTVIEVADT 85 (296)
Q Consensus 13 ~~~~~~~~~~~-~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~--~~p~~~G~e~~G~V~~v~~~ 85 (296)
|++++++.++. . .|.|+|.++ ||||||.+++||++|++.++|.++..+ .+|.++|||++|+|+++
T Consensus 1 mka~~~~~~~~~l~~~~~p~p~~~~~-----evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~v--- 72 (355)
T cd08230 1 MKAIAVKPGKPGVRVVDIPEPEPTPG-----EVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEV--- 72 (355)
T ss_pred CceeEecCCCCCCeEEeCCCCCCCCC-----eEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEe---
Confidence 56677764332 2 678888889 999999999999999999998764322 35789999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEecC----------------------------CCCCcccceEeeeCCceEECCCCCCHH
Q psy1959 86 KSSSTEEDDEEDVLQVGDKVLALNK----------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFE 137 (296)
Q Consensus 86 ~~~~~~~g~~v~~~~~Gd~V~~~~~----------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~ 137 (296)
|++ +.|++||||+.... ...|+|+||+.++++.++++|++++
T Consensus 73 -------G~~-~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~g~~~~~G~~aey~~~~~~~~~~~P~~~~-- 142 (355)
T cd08230 73 -------GDG-SGLSPGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYTERGIKGLHGFMREYFVDDPEYLVKVPPSLA-- 142 (355)
T ss_pred -------cCC-CCCCCCCEEEeccccCCCcChhhhCcCcccCCCcceeccCcCCCCccceeEEEeccccEEECCCCCC--
Confidence 888 88999999986431 1248899999999999999999999
Q ss_pred HHhhhccHHHHHHHHHHH------HcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC---CcchHHHHHhcCC
Q psy1959 138 HAASLADSYSTAQIVFSR------HAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN---SEDKTDLIRQKGA 208 (296)
Q Consensus 138 ~aa~l~~~~~ta~~~l~~------~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~---~~~~~~~~~~~g~ 208 (296)
+++++..++++++.++.. ..+.++|++|+|+|+ |++|++++|+| +..|++|+++++ +++|+++++++|+
T Consensus 143 ~~a~~~~p~~~~~~a~~~~~~~~~~~~~~~g~~vlI~G~-G~vG~~a~q~a-k~~G~~vi~~~~~~~~~~~~~~~~~~Ga 220 (355)
T cd08230 143 DVGVLLEPLSVVEKAIEQAEAVQKRLPTWNPRRALVLGA-GPIGLLAALLL-RLRGFEVYVLNRRDPPDPKADIVEELGA 220 (355)
T ss_pred cceeecchHHHHHHHHHHHhhhhhhcccCCCCEEEEECC-CHHHHHHHHHH-HHcCCeEEEEecCCCCHHHHHHHHHcCC
Confidence 344566777776655432 223578999999996 99999999999 678999999987 5789999999999
Q ss_pred cEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEee----------------cccceeeee
Q psy1959 209 WAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFTN----------------EKSLVNKVL 271 (296)
Q Consensus 209 ~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~~----------------~~~~~~k~~ 271 (296)
+. +++.+ .++.+ . .. ..++|++||++|. ..+..+++++ +.+|.+.+- ...++.|++
T Consensus 221 ~~-v~~~~-~~~~~-~-~~--~~~~d~vid~~g~~~~~~~~~~~l-~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~k~~ 293 (355)
T cd08230 221 TY-VNSSK-TPVAE-V-KL--VGEFDLIIEATGVPPLAFEALPAL-APNGVVILFGVPGGGREFEVDGGELNRDLVLGNK 293 (355)
T ss_pred EE-ecCCc-cchhh-h-hh--cCCCCEEEECcCCHHHHHHHHHHc-cCCcEEEEEecCCCCCccccChhhhhhhHhhcCc
Confidence 86 45544 33333 2 11 3489999999998 5789999999 777766321 123456888
Q ss_pred EEeccc
Q psy1959 272 EVSGGK 277 (296)
Q Consensus 272 ~i~g~~ 277 (296)
++.|+.
T Consensus 294 ~i~g~~ 299 (355)
T cd08230 294 ALVGSV 299 (355)
T ss_pred EEEEec
Confidence 888875
No 30
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=100.00 E-value=1.4e-31 Score=245.52 Aligned_cols=214 Identities=19% Similarity=0.277 Sum_probs=180.5
Q ss_pred CCCCCCC-CCCCCCCcEEEEeeeeecChhhHHHHcCCC--CCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCC
Q psy1959 25 KPTLPLV-PGFEFSGTIIEKKMMTRINSSDLLLYNGSG--DAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQV 101 (296)
Q Consensus 25 ~~~p~~~-~~~~~~~evlvkv~~~~i~~~D~~~~~g~~--~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~ 101 (296)
.|.|.|. ++ ||||||.|+|||+.|........ ....++|.++|||++|+|+++ |+++++|++
T Consensus 28 ~~~p~~~~~~-----evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~v----------G~~v~~~~~ 92 (345)
T cd08293 28 CTLPDELNEG-----QVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVE----------ESKHQKFAV 92 (345)
T ss_pred ccCCCCCCCC-----eEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEe----------ccCCCCCCC
Confidence 5677664 88 99999999999999864332111 112346789999999999999 999999999
Q ss_pred CCEEEEecCCCCCcccceEeeeCCceEECCCCCCHH----HHhhhccHHHHHHHHHHHHcCCCCC--cEEEEEcCCCcHH
Q psy1959 102 GDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFE----HAASLADSYSTAQIVFSRHAKLKEK--QTVLVTAAGGGLG 175 (296)
Q Consensus 102 Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~----~aa~l~~~~~ta~~~l~~~~~~~~g--~~vlI~Ga~g~vG 175 (296)
||+|+++. ++|+||++++++.++++|++++.. .+++++.++.|||+++.+.+++++| ++|+|+|++|++|
T Consensus 93 Gd~V~~~~----~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~~~VlI~ga~g~vG 168 (345)
T cd08293 93 GDIVTSFN----WPWQTYAVLDGSSLEKVDPQLVDGHLSYFLGAVGLPGLTALIGIQEKGHITPGANQTMVVSGAAGACG 168 (345)
T ss_pred CCEEEecC----CCceeEEEecHHHeEEcCccccccchhHHhhhcCcHHHHHHHHHHHhccCCCCCCCEEEEECCCcHHH
Confidence 99998752 679999999999999999985432 1456788999999999888888877 9999999999999
Q ss_pred HHHHHHHHHhCCC-EEEEEeCCcchHHHHHh-cCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhh
Q psy1959 176 LAAVDMATKIYKA-KVIGVCNSEDKTDLIRQ-KGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKG 253 (296)
Q Consensus 176 ~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg 253 (296)
++++|+| +.+|+ +|+++++++++.+++++ +|++.++++++ .++.+.+++.++ +++|++||++|+..+..+++++
T Consensus 169 ~~aiqlA-k~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~-~~~~~~i~~~~~-~gvd~vid~~g~~~~~~~~~~l- 244 (345)
T cd08293 169 SLAGQIG-RLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKT-DNVAERLRELCP-EGVDVYFDNVGGEISDTVISQM- 244 (345)
T ss_pred HHHHHHH-HHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCC-CCHHHHHHHHCC-CCceEEEECCCcHHHHHHHHHh-
Confidence 9999999 67899 89999999999999876 99999888876 678888888775 6899999999998889999999
Q ss_pred ccCceEEe
Q psy1959 254 AWAALTFT 261 (296)
Q Consensus 254 ~~~g~~~~ 261 (296)
+.+|++..
T Consensus 245 ~~~G~iv~ 252 (345)
T cd08293 245 NENSHIIL 252 (345)
T ss_pred ccCCEEEE
Confidence 88887643
No 31
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=2e-31 Score=244.93 Aligned_cols=241 Identities=22% Similarity=0.260 Sum_probs=195.9
Q ss_pred cceEEecCCCCC----CCCCCC-CCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCC
Q psy1959 13 SDLLLYNGSGDA----KPTLPL-VPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKS 87 (296)
Q Consensus 13 ~~~~~~~~~~~~----~~~p~~-~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~ 87 (296)
|++++++++++. .|.|.| .++ ||+|||.++++|++|...+..... ..+|.++|||++|+|+++
T Consensus 1 Mka~~~~~~~~~~~~~~~~P~~~~~~-----evlV~v~~~gi~~~D~~~~~~~~~--~~~p~i~G~e~~G~V~~v----- 68 (347)
T PRK10309 1 MKSVVNDTDGIVRVAESPIPEIKHQD-----DVLVKVASSGLCGSDIPRIFKNGA--HYYPITLGHEFSGYVEAV----- 68 (347)
T ss_pred CceEEEeCCCceEEEECCCCCCCCCC-----EEEEEEEEEEEchhcHHHHhCCCC--CCCCcccccceEEEEEEe-----
Confidence 678888876655 567776 478 999999999999999875432111 235889999999999999
Q ss_pred CCCCCCCCCCCCCCCCEEEEecC-------------------------CCCCcccceEeeeCCceEECCCCCCHHHHhhh
Q psy1959 88 SSTEEDDEEDVLQVGDKVLALNK-------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASL 142 (296)
Q Consensus 88 ~~~~~g~~v~~~~~Gd~V~~~~~-------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l 142 (296)
|+++.+|++||+|++... +..|+|+||+.++.+.++++|+++++++++.+
T Consensus 69 -----G~~v~~~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~~s~~~aa~~ 143 (347)
T PRK10309 69 -----GSGVDDLHPGDAVACVPLLPCFTCPECLRGFYSLCAKYDFIGSRRDGGNAEYIVVKRKNLFALPTDMPIEDGAFI 143 (347)
T ss_pred -----CCCCCCCCCCCEEEECCCcCCCCCcchhCcCcccCCCcceeccCCCCccceeEEeehHHeEECcCCCCHHHhhhh
Confidence 999999999999997531 12589999999999999999999999999865
Q ss_pred ccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCE-EEEEeCCcchHHHHHhcCCcEEEEcCCchhHH
Q psy1959 143 ADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAK-VIGVCNSEDKTDLIRQKGAWAALTFTNEKSLV 221 (296)
Q Consensus 143 ~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~-Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 221 (296)
.+++++|+++ +...+++|++|+|+|+ |++|++++|+| +.+|++ |+++++++++.+.++++|++.++++++ .+ .
T Consensus 144 -~~~~~~~~~~-~~~~~~~g~~vlV~G~-g~vG~~~~~~a-~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~-~~-~ 217 (347)
T PRK10309 144 -EPITVGLHAF-HLAQGCEGKNVIIIGA-GTIGLLAIQCA-VALGAKSVTAIDINSEKLALAKSLGAMQTFNSRE-MS-A 217 (347)
T ss_pred -hHHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCeEEEECCCHHHHHHHHHcCCceEecCcc-cC-H
Confidence 3667788886 6778899999999985 99999999999 678996 788889999999999999988888765 34 4
Q ss_pred HHHHHHhCCCccc-EEEECCCC-ccHHHHHHHhhccCceEEeec-------------ccceeeeeEEeccc
Q psy1959 222 NKVLEVSGGKYAN-VVFEAVGG-EDKTDLIRQKGAWAALTFTNE-------------KSLVNKVLEVSGGK 277 (296)
Q Consensus 222 ~~i~~~~~~~g~d-~vld~~g~-~~~~~~~~~lg~~~g~~~~~~-------------~~~~~k~~~i~g~~ 277 (296)
+.+.+.+.+.++| ++|||+|+ ..+..+++++ +++|.+.+-. ..++.|+++|.|++
T Consensus 218 ~~~~~~~~~~~~d~~v~d~~G~~~~~~~~~~~l-~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~ 287 (347)
T PRK10309 218 PQIQSVLRELRFDQLILETAGVPQTVELAIEIA-GPRAQLALVGTLHHDLHLTSATFGKILRKELTVIGSW 287 (347)
T ss_pred HHHHHHhcCCCCCeEEEECCCCHHHHHHHHHHh-hcCCEEEEEccCCCCcccChhhhhHHhhcCcEEEEEe
Confidence 5567777667888 99999998 5889999999 7777774321 13566888888875
No 32
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=100.00 E-value=1.7e-31 Score=243.98 Aligned_cols=222 Identities=14% Similarity=0.077 Sum_probs=187.6
Q ss_pred CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCE
Q psy1959 25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDK 104 (296)
Q Consensus 25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~ 104 (296)
.|.|.|.++ ||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++ |++++.+++||+
T Consensus 20 ~p~P~~~~~-----evlVkv~~~gi~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~v----------G~~v~~~~~Gd~ 83 (329)
T TIGR02822 20 RPVPRPGPG-----ELLVRVRACGVCRTDLHVSEGDLPV-HRPRVTPGHEVVGEVAGR----------GADAGGFAVGDR 83 (329)
T ss_pred CCCCCCCCC-----eEEEEEEEEeecchhHHHHcCCCCC-CCCCccCCcceEEEEEEE----------CCCCcccCCCCE
Confidence 678888899 9999999999999999999987643 234789999999999999 999999999999
Q ss_pred EEEecC--------------------------CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcC
Q psy1959 105 VLALNK--------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAK 158 (296)
Q Consensus 105 V~~~~~--------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~ 158 (296)
|+.... ...|+|+||+.++...++++|+++++++++.+++++.+||+++ ..++
T Consensus 84 V~~~~~~~~c~~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~~~~~~aa~l~~~~~ta~~~~-~~~~ 162 (329)
T TIGR02822 84 VGIAWLRRTCGVCRYCRRGAENLCPASRYTGWDTDGGYAEYTTVPAAFAYRLPTGYDDVELAPLLCAGIIGYRAL-LRAS 162 (329)
T ss_pred EEEcCccCcCCCChHHhCcCcccCCCcccCCcccCCcceeEEEeccccEEECCCCCCHHHhHHHhccchHHHHHH-HhcC
Confidence 974210 1248999999999999999999999999999999999999999 4689
Q ss_pred CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959 159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFE 238 (296)
Q Consensus 159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld 238 (296)
+++|++|+|+|+ |++|++++|+| +..|++|++++++++|+++++++|++.+++..+ . ..+++|++++
T Consensus 163 ~~~g~~VlV~G~-g~iG~~a~~~a-~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~-~----------~~~~~d~~i~ 229 (329)
T TIGR02822 163 LPPGGRLGLYGF-GGSAHLTAQVA-LAQGATVHVMTRGAAARRLALALGAASAGGAYD-T----------PPEPLDAAIL 229 (329)
T ss_pred CCCCCEEEEEcC-CHHHHHHHHHH-HHCCCeEEEEeCChHHHHHHHHhCCceeccccc-c----------CcccceEEEE
Confidence 999999999997 99999999999 678999999999999999999999998876532 1 1236899999
Q ss_pred CCCC-ccHHHHHHHhhccCceEEee-----------cccceeeeeEEeccc
Q psy1959 239 AVGG-EDKTDLIRQKGAWAALTFTN-----------EKSLVNKVLEVSGGK 277 (296)
Q Consensus 239 ~~g~-~~~~~~~~~lg~~~g~~~~~-----------~~~~~~k~~~i~g~~ 277 (296)
+.+. +.+..+++++ +++|++.+- ...++.|++++.+++
T Consensus 230 ~~~~~~~~~~~~~~l-~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~i~g~~ 279 (329)
T TIGR02822 230 FAPAGGLVPPALEAL-DRGGVLAVAGIHLTDTPPLNYQRHLFYERQIRSVT 279 (329)
T ss_pred CCCcHHHHHHHHHhh-CCCcEEEEEeccCccCCCCCHHHHhhCCcEEEEee
Confidence 8876 7899999999 888877431 113455677777765
No 33
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=100.00 E-value=3.2e-31 Score=244.78 Aligned_cols=245 Identities=25% Similarity=0.347 Sum_probs=202.5
Q ss_pred ceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCC
Q psy1959 14 DLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSS 88 (296)
Q Consensus 14 ~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~ 88 (296)
|++++.++++. .|.|.|.++ ||+|||.++++|++|+....|.++. ..+|.++|||++|+|+++
T Consensus 2 ka~~~~~~~~~l~~~~~~~p~~~~~-----evlV~v~a~~l~~~d~~~~~g~~~~-~~~p~~~G~e~~G~V~~v------ 69 (361)
T cd08231 2 RAAVLTGPGKPLEIREVPLPDLEPG-----AVLVRVRLAGVCGSDVHTVAGRRPR-VPLPIILGHEGVGRVVAL------ 69 (361)
T ss_pred eEEEEcCCCCCCEEEeccCCCCCCC-----eEEEEEEEEeecCccHHHhcCCCCC-CCCCcccccCCceEEEEe------
Confidence 56667766633 677888888 9999999999999999999887653 456889999999999999
Q ss_pred CCCCCCCCCC------CCCCCEEEEecC--------------------------------CCCCcccceEeeeCC-ceEE
Q psy1959 89 STEEDDEEDV------LQVGDKVLALNK--------------------------------ELLHGFSDQCVVHTN-DVFK 129 (296)
Q Consensus 89 ~~~~g~~v~~------~~~Gd~V~~~~~--------------------------------~~~g~~~~~~~v~~~-~~~~ 129 (296)
|+++.. |++||+|+++.. ...|+|++|+.++++ .+++
T Consensus 70 ----G~~v~~~~~~~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~ 145 (361)
T cd08231 70 ----GGGVTTDVAGEPLKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKKYGHEASCDDPHLSGGYAEHIYLPPGTAIVR 145 (361)
T ss_pred ----CCCccccccCCccCCCCEEEEcccCCCCCChhHhCcCccccccchhccccccccCCCCCcccceEEEecCCCceEE
Confidence 998876 999999998621 124899999999996 7999
Q ss_pred CCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCC
Q psy1959 130 IPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGA 208 (296)
Q Consensus 130 iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~ 208 (296)
+|++++.+.++.++++++|||+++.+....++|++|+|+|+ |++|++++++| +..|+ +|+++++++++.++++++|+
T Consensus 146 lP~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~g~-g~vG~~~~~la-k~~G~~~v~~~~~~~~~~~~~~~~g~ 223 (361)
T cd08231 146 VPDNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQGA-GPLGLYAVAAA-KLAGARRVIVIDGSPERLELAREFGA 223 (361)
T ss_pred CCCCCCHHHHHHhcCHHHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCeEEEEcCCHHHHHHHHHcCC
Confidence 99999999999888999999999977777779999999985 99999999999 66899 99999999999999999999
Q ss_pred cEEEEcCCc--hhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEeec------------ccceeeeeEE
Q psy1959 209 WAALTFTNE--KSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFTNE------------KSLVNKVLEV 273 (296)
Q Consensus 209 ~~~~~~~~~--~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~~~------------~~~~~k~~~i 273 (296)
+.++++++. .++...+.+.++++++|++||++|+ ..+..+++++ +.+|++..-. ..++.+++++
T Consensus 224 ~~vi~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l-~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~ 302 (361)
T cd08231 224 DATIDIDELPDPQRRAIVRDITGGRGADVVIEASGHPAAVPEGLELL-RRGGTYVLVGSVAPAGTVPLDPERIVRKNLTI 302 (361)
T ss_pred CeEEcCcccccHHHHHHHHHHhCCCCCcEEEECCCChHHHHHHHHHh-ccCCEEEEEcCCCCCCccccCHHHHhhcccEE
Confidence 888777541 1233567788877899999999997 6788999999 7777664321 1136677777
Q ss_pred eccc
Q psy1959 274 SGGK 277 (296)
Q Consensus 274 ~g~~ 277 (296)
.+.+
T Consensus 303 ~~~~ 306 (361)
T cd08231 303 IGVH 306 (361)
T ss_pred EEcc
Confidence 7665
No 34
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=100.00 E-value=5e-31 Score=243.50 Aligned_cols=241 Identities=21% Similarity=0.195 Sum_probs=197.6
Q ss_pred CcceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCC
Q psy1959 12 SSDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTK 86 (296)
Q Consensus 12 ~~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~ 86 (296)
.++++++.+++.. +|.|.|.++ ||+|||.+++||++|+..+.|.+.. ..+|.++|||++|+|+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~-----eVlVrv~a~gi~~~D~~~~~g~~~~-~~~p~i~G~E~~G~Vv~v---- 78 (357)
T PLN02514 9 KTTGWAARDPSGHLSPYTYTLRKTGPE-----DVVIKVIYCGICHTDLHQIKNDLGM-SNYPMVPGHEVVGEVVEV---- 78 (357)
T ss_pred eEEEEEEecCCCCceEEeecCCCCCCC-----cEEEEEEEeccChHHHHhhcCCcCc-CCCCccCCceeeEEEEEE----
Confidence 3677888887764 677788888 9999999999999999999887643 356889999999999999
Q ss_pred CCCCCCCCCCCCCCCCCEEEEec---------------------------------CCCCCcccceEeeeCCceEECCCC
Q psy1959 87 SSSTEEDDEEDVLQVGDKVLALN---------------------------------KELLHGFSDQCVVHTNDVFKIPEK 133 (296)
Q Consensus 87 ~~~~~~g~~v~~~~~Gd~V~~~~---------------------------------~~~~g~~~~~~~v~~~~~~~iP~~ 133 (296)
|++++.|++||+|+... ....|+|+||+.++...++++|++
T Consensus 79 ------G~~v~~~~~Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~ 152 (357)
T PLN02514 79 ------GSDVSKFTVGDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVYTDGKPTQGGFASAMVVDQKFVVKIPEG 152 (357)
T ss_pred ------CCCcccccCCCEEEEcCccccCCCChhHhCCCcccCCCccccccccccCCccCCCccccEEEEchHHeEECCCC
Confidence 99999999999997421 012489999999999999999999
Q ss_pred CCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH-HhcCCcEEE
Q psy1959 134 MTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI-RQKGAWAAL 212 (296)
Q Consensus 134 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~-~~~g~~~~~ 212 (296)
++++++++++.++.+||+++.+....++|++++|+|+ |++|++++|+| +..|++|++++.++++...+ +++|++.++
T Consensus 153 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-G~vG~~av~~A-k~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i 230 (357)
T PLN02514 153 MAPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGL-GGVGHMGVKIA-KAMGHHVTVISSSDKKREEALEHLGADDYL 230 (357)
T ss_pred CCHHHhhhhhhhHHHHHHHHHHcccCCCCCeEEEEcc-cHHHHHHHHHH-HHCCCeEEEEeCCHHHHHHHHHhcCCcEEe
Confidence 9999999999999999999976666789999999975 99999999999 67899999888887776555 568998776
Q ss_pred EcCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEe----------ecccceeeeeEEeccc
Q psy1959 213 TFTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFT----------NEKSLVNKVLEVSGGK 277 (296)
Q Consensus 213 ~~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~----------~~~~~~~k~~~i~g~~ 277 (296)
+..+ . +.+.+.+ .++|++||++|. ..+..+++++ +++|++.. +...++.+++++.|++
T Consensus 231 ~~~~-~---~~~~~~~--~~~D~vid~~g~~~~~~~~~~~l-~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~ 299 (357)
T PLN02514 231 VSSD-A---AEMQEAA--DSLDYIIDTVPVFHPLEPYLSLL-KLDGKLILMGVINTPLQFVTPMLMLGRKVITGSF 299 (357)
T ss_pred cCCC-h---HHHHHhc--CCCcEEEECCCchHHHHHHHHHh-ccCCEEEEECCCCCCCcccHHHHhhCCcEEEEEe
Confidence 6543 2 2344444 279999999997 6889999999 77776632 2235667888888875
No 35
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=100.00 E-value=4.4e-31 Score=248.18 Aligned_cols=248 Identities=17% Similarity=0.179 Sum_probs=192.2
Q ss_pred CcceEEecCCCCC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHH-cCCCCC-----CCCCCCcCCCceeEEEEE
Q psy1959 12 SSDLLLYNGSGDA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLY-NGSGDA-----KPTLPLVPGFEFSGTVIE 81 (296)
Q Consensus 12 ~~~~~~~~~~~~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~-~g~~~~-----~~~~p~~~G~e~~G~V~~ 81 (296)
.|++++++++++. .|.|.|.++ ||+|||.++|||++|++.+ .|.... ...+|.++|||++|+|++
T Consensus 2 ~~~a~~~~~~~~l~~~e~p~P~~~~~-----eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~ 76 (410)
T cd08238 2 KTKAWRMYGKGDLRLEKFELPEIADD-----EILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILK 76 (410)
T ss_pred CcEEEEEEcCCceEEEecCCCCCCCC-----eEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEE
Confidence 3778888887765 577778888 9999999999999999976 454211 124688999999999999
Q ss_pred EccCCCCCCCCCCCCC-CCCCCCEEEEecC--------------CCCCcccceEeeeCC----ceEECCCCCCHHHHhhh
Q psy1959 82 VADTKSSSTEEDDEED-VLQVGDKVLALNK--------------ELLHGFSDQCVVHTN----DVFKIPEKMTFEHAASL 142 (296)
Q Consensus 82 v~~~~~~~~~~g~~v~-~~~~Gd~V~~~~~--------------~~~g~~~~~~~v~~~----~~~~iP~~~~~~~aa~l 142 (296)
+ |++++ .|++||||+.... ...|+|+||++++.+ .++++|+++++++++.+
T Consensus 77 v----------G~~v~~~~~vGdrV~~~~~~~c~~~~~c~~~g~~~~G~~aey~~v~~~~~~~~~~~lP~~l~~~~aal~ 146 (410)
T cd08238 77 V----------GKKWQGKYKPGQRFVIQPALILPDGPSCPGYSYTYPGGLATYHIIPNEVMEQDCLLIYEGDGYAEASLV 146 (410)
T ss_pred e----------CCCccCCCCCCCEEEEcCCcCCCCCCCCCCccccCCCcceEEEEecHHhccCCeEECCCCCCHHHHhhc
Confidence 9 99998 6999999987521 125999999999987 68999999999988743
Q ss_pred ccHHHH---HHHHH--------HHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC---EEEEEeCCcchHHHHHhc--
Q psy1959 143 ADSYST---AQIVF--------SRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA---KVIGVCNSEDKTDLIRQK-- 206 (296)
Q Consensus 143 ~~~~~t---a~~~l--------~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~---~Vi~~~~~~~~~~~~~~~-- 206 (296)
.++.+ ++.++ .+.+++++|++|+|+|++|++|++++|+| +..|+ +|++++.+++|++.++++
T Consensus 147 -epl~~~~~~~~a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~a-k~~G~g~~~Vi~~~~~~~r~~~a~~~~~ 224 (410)
T cd08238 147 -EPLSCVIGAYTANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYA-IHGPIGPSLLVVTDVNDERLARAQRLFP 224 (410)
T ss_pred -chHHHHHHHhhhcccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHH-HhcccCCceEEEEcCCHHHHHHHHHhcc
Confidence 33332 33332 24578899999999998899999999999 55543 899999999999999997
Q ss_pred ------CCc-EEEEcCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceE-Ee------------eccc
Q psy1959 207 ------GAW-AALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALT-FT------------NEKS 265 (296)
Q Consensus 207 ------g~~-~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~-~~------------~~~~ 265 (296)
|++ .++++++..++.+.+++.++++++|+++|++|. +.+..+++++ +++|.+ .+ +...
T Consensus 225 ~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t~g~g~D~vid~~g~~~~~~~a~~~l-~~~G~~v~~~g~~~~~~~~~~~~~~ 303 (410)
T cd08238 225 PEAASRGIELLYVNPATIDDLHATLMELTGGQGFDDVFVFVPVPELVEEADTLL-APDGCLNFFAGPVDKNFSAPLNFYN 303 (410)
T ss_pred ccccccCceEEEECCCccccHHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHh-ccCCeEEEEEccCCCCccccccHHH
Confidence 665 345554324677788888888899999999987 7899999999 655543 22 1124
Q ss_pred ceeeeeEEeccc
Q psy1959 266 LVNKVLEVSGGK 277 (296)
Q Consensus 266 ~~~k~~~i~g~~ 277 (296)
++.|+++|.|+.
T Consensus 304 ~~~~~~~i~g~~ 315 (410)
T cd08238 304 VHYNNTHYVGTS 315 (410)
T ss_pred hhhcCcEEEEeC
Confidence 567788888765
No 36
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=100.00 E-value=1.2e-30 Score=237.66 Aligned_cols=224 Identities=20% Similarity=0.247 Sum_probs=186.9
Q ss_pred eeEeecccCCcceEEecCCCCCCCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEE
Q psy1959 3 IDIQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEV 82 (296)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v 82 (296)
++......++...+.+. ..|.|.|+++ ||||||.|+++|+.+. .|.+.. ...|.++|+|++|+|+++
T Consensus 6 ~~~~~~~~~~~~~l~~~----~~~~p~~~~~-----evlv~v~a~~~n~~~~---~g~~~~-~~~~~i~G~~~~g~v~~~ 72 (325)
T TIGR02825 6 LKKHFVGYPTDSDFELK----TVELPPLNNG-----EVLLEALFLSVDPYMR---VAAKRL-KEGDTMMGQQVARVVESK 72 (325)
T ss_pred EecCCCCCCCCCceEEE----eccCCCCCCC-----cEEEEEEEEecCHHHh---cccCcC-CCCCcEecceEEEEEEeC
Confidence 44445556666666665 3678888999 9999999999999654 444332 234789999999999998
Q ss_pred ccCCCCCCCCCCCCCCCCCCCEEEEecCCCCCcccceEeeeCCceEEC----CCCCCHHHH-hhhccHHHHHHHHHHHHc
Q psy1959 83 ADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKI----PEKMTFEHA-ASLADSYSTAQIVFSRHA 157 (296)
Q Consensus 83 ~~~~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~i----P~~~~~~~a-a~l~~~~~ta~~~l~~~~ 157 (296)
|+ .|++||+|+++ ++|++|++++.+.+.++ |++++++++ +++++++.|||+++.+.+
T Consensus 73 ----------~~---~~~~GdrV~~~-----~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~~~~~TA~~~l~~~~ 134 (325)
T TIGR02825 73 ----------NV---ALPKGTIVLAS-----PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVGMPGLTAYFGLLEIC 134 (325)
T ss_pred ----------CC---CCCCCCEEEEe-----cCceeeEEechhheEEccccccCCCCHHHHHHhcccHHHHHHHHHHHHh
Confidence 63 59999999986 45999999999888777 999999987 678999999999998889
Q ss_pred CCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEE
Q psy1959 158 KLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVF 237 (296)
Q Consensus 158 ~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vl 237 (296)
++++|++|+|+|++|++|++++|+| +..|++|+++++++++.++++++|++.++++++...+.+.+.... ++++|++|
T Consensus 135 ~~~~g~~VLI~ga~g~vG~~aiqlA-k~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~-~~gvdvv~ 212 (325)
T TIGR02825 135 GVKGGETVMVNAAAGAVGSVVGQIA-KLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKAS-PDGYDCYF 212 (325)
T ss_pred CCCCCCEEEEeCCccHHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhC-CCCeEEEE
Confidence 9999999999999999999999999 678999999999999999999999999998875235555565554 45899999
Q ss_pred ECCCCccHHHHHHHhhccCceEE
Q psy1959 238 EAVGGEDKTDLIRQKGAWAALTF 260 (296)
Q Consensus 238 d~~g~~~~~~~~~~lg~~~g~~~ 260 (296)
|++|++.+..+++++ +++|++.
T Consensus 213 d~~G~~~~~~~~~~l-~~~G~iv 234 (325)
T TIGR02825 213 DNVGGEFSNTVIGQM-KKFGRIA 234 (325)
T ss_pred ECCCHHHHHHHHHHh-CcCcEEE
Confidence 999998889999999 8887774
No 37
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=99.98 E-value=3.2e-31 Score=240.06 Aligned_cols=229 Identities=19% Similarity=0.219 Sum_probs=176.4
Q ss_pred CcceEEecCCCCC----CCCCCCCCCCCCCCcEEEEeeeeecC-hhhHHHHcCCCCCC--CCCCCcCCCceeEEEEEEcc
Q psy1959 12 SSDLLLYNGSGDA----KPTLPLVPGFEFSGTIIEKKMMTRIN-SSDLLLYNGSGDAK--PTLPLVPGFEFSGTVIEVAD 84 (296)
Q Consensus 12 ~~~~~~~~~~~~~----~~~p~~~~~~~~~~evlvkv~~~~i~-~~D~~~~~g~~~~~--~~~p~~~G~e~~G~V~~v~~ 84 (296)
+++++++.+++.. .|.|.|.++ ||+|||.+++|| ++|+..+.|.++.. ..+|.++|||++|+|+++
T Consensus 1 ~~ka~~~~~~~~l~~~e~~~p~~~~~-----evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~v-- 73 (308)
T TIGR01202 1 KTQAIVLSGPNQIELREVTLTPPSPG-----DLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEA-- 73 (308)
T ss_pred CceEEEEeCCCeEEEEEecCCCCCCC-----eEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEe--
Confidence 3567777766655 677788889 999999999996 79999998876532 357999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEecC-------CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHc
Q psy1959 85 TKSSSTEEDDEEDVLQVGDKVLALNK-------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHA 157 (296)
Q Consensus 85 ~~~~~~~~g~~v~~~~~Gd~V~~~~~-------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~ 157 (296)
|+++ .|++||||+.... ...|+|+||+++|++.++++|++++++. +.+ .++.+||+++.+ .
T Consensus 74 --------G~~v-~~~vGdrV~~~~~~c~~~~~~~~G~~aey~~v~~~~~~~ip~~~~~~~-a~~-~~~~~a~~~~~~-~ 141 (308)
T TIGR01202 74 --------GPDT-GFRPGDRVFVPGSNCYEDVRGLFGGASKRLVTPASRVCRLDPALGPQG-ALL-ALAATARHAVAG-A 141 (308)
T ss_pred --------cCCC-CCCCCCEEEEeCccccccccccCCcccceEEcCHHHceeCCCCCCHHH-Hhh-hHHHHHHHHHHh-c
Confidence 9988 5999999986421 1249999999999999999999999864 434 467999999854 3
Q ss_pred CCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCE-EEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEE
Q psy1959 158 KLKEKQTVLVTAAGGGLGLAAVDMATKIYKAK-VIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVV 236 (296)
Q Consensus 158 ~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~-Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~v 236 (296)
..++++++|+|+ |++|++++|+| +.+|++ |++++..+++++.+... .++++.+ . .+.++|++
T Consensus 142 -~~~~~~vlV~G~-G~vG~~a~q~a-k~~G~~~v~~~~~~~~rl~~a~~~---~~i~~~~--~---------~~~g~Dvv 204 (308)
T TIGR01202 142 -EVKVLPDLIVGH-GTLGRLLARLT-KAAGGSPPAVWETNPRRRDGATGY---EVLDPEK--D---------PRRDYRAI 204 (308)
T ss_pred -ccCCCcEEEECC-CHHHHHHHHHH-HHcCCceEEEeCCCHHHHHhhhhc---cccChhh--c---------cCCCCCEE
Confidence 336889999986 99999999999 678997 55566666676665443 2333321 0 24589999
Q ss_pred EECCCC-ccHHHHHHHhhccCceEEe----------ecccceeeeeEEeccc
Q psy1959 237 FEAVGG-EDKTDLIRQKGAWAALTFT----------NEKSLVNKVLEVSGGK 277 (296)
Q Consensus 237 ld~~g~-~~~~~~~~~lg~~~g~~~~----------~~~~~~~k~~~i~g~~ 277 (296)
|||+|+ ..++.+++++ +++|++.+ +...++.|++++.++.
T Consensus 205 id~~G~~~~~~~~~~~l-~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~~~~ 255 (308)
T TIGR01202 205 YDASGDPSLIDTLVRRL-AKGGEIVLAGFYTEPVNFDFVPAFMKEARLRIAA 255 (308)
T ss_pred EECCCCHHHHHHHHHhh-hcCcEEEEEeecCCCcccccchhhhcceEEEEec
Confidence 999999 4789999999 88877742 2234566777777754
No 38
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=99.98 E-value=2.3e-30 Score=235.52 Aligned_cols=229 Identities=27% Similarity=0.407 Sum_probs=198.8
Q ss_pred CcceEEecCCCCC-------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEcc
Q psy1959 12 SSDLLLYNGSGDA-------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVAD 84 (296)
Q Consensus 12 ~~~~~~~~~~~~~-------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~ 84 (296)
+||++++.++++. .+.|.+.++ ||+|||.++++|+.|.....|.+......|.++|+|++|+|+++
T Consensus 1 ~m~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~v-- 73 (334)
T PTZ00354 1 MMRAVTLKGFGGVDVLKIGESPKPAPKRN-----DVLIKVSAAGVNRADTLQRQGKYPPPPGSSEILGLEVAGYVEDV-- 73 (334)
T ss_pred CcEEEEEEecCCCcceEEEeCCCCCCCCC-----EEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEe--
Confidence 4677777766542 344566778 99999999999999999998866544455778999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcE
Q psy1959 85 TKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQT 164 (296)
Q Consensus 85 ~~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~ 164 (296)
|+++..+++||+|+++.. .|+|++|++++.+.++++|++++..+++.++.++.+||.++....++++|++
T Consensus 74 --------G~~v~~~~~Gd~V~~~~~--~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~ 143 (334)
T PTZ00354 74 --------GSDVKRFKEGDRVMALLP--GGGYAEYAVAHKGHVMHIPQGYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQS 143 (334)
T ss_pred --------CCCCCCCCCCCEEEEecC--CCceeeEEEecHHHcEeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 999989999999999854 4899999999999999999999999999999999999999988889999999
Q ss_pred EEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchh-HHHHHHHHhCCCcccEEEECCCCc
Q psy1959 165 VLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKS-LVNKVLEVSGGKYANVVFEAVGGE 243 (296)
Q Consensus 165 vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~i~~~~~~~g~d~vld~~g~~ 243 (296)
++|+|++|++|++++++| +..|++++++++++++.+.++++|++.+++... .+ +.+.+.+.++++++|+++|++|++
T Consensus 144 vlI~ga~g~~g~~~~~~a-~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~i~~~~~~ 221 (334)
T PTZ00354 144 VLIHAGASGVGTAAAQLA-EKYGAATIITTSSEEKVDFCKKLAAIILIRYPD-EEGFAPKVKKLTGEKGVNLVLDCVGGS 221 (334)
T ss_pred EEEEcCCchHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHcCCcEEEecCC-hhHHHHHHHHHhCCCCceEEEECCchH
Confidence 999999999999999999 678999888999999999999999987887765 44 777788888778999999999988
Q ss_pred cHHHHHHHhhccCceEE
Q psy1959 244 DKTDLIRQKGAWAALTF 260 (296)
Q Consensus 244 ~~~~~~~~lg~~~g~~~ 260 (296)
.+..+++++ ..+|.+.
T Consensus 222 ~~~~~~~~l-~~~g~~i 237 (334)
T PTZ00354 222 YLSETAEVL-AVDGKWI 237 (334)
T ss_pred HHHHHHHHh-ccCCeEE
Confidence 999999999 6666663
No 39
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=99.98 E-value=1.5e-30 Score=240.89 Aligned_cols=228 Identities=23% Similarity=0.247 Sum_probs=197.1
Q ss_pred CcceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCC
Q psy1959 12 SSDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTK 86 (296)
Q Consensus 12 ~~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~ 86 (296)
+|+++++++++.. .|.|.+.++ ||+||+.++++|++|+....|.++ ..+|.++|+|++|+|+++
T Consensus 2 ~~~a~~~~~~~~~~~~~~~~~p~~~~~-----~v~Vkv~a~gi~~~d~~~~~g~~~--~~~p~v~G~e~~G~V~~v---- 70 (365)
T cd08278 2 KTTAAVVREPGGPFVLEDVELDDPRPD-----EVLVRIVATGICHTDLVVRDGGLP--TPLPAVLGHEGAGVVEAV---- 70 (365)
T ss_pred ccEEeeeccCCCcceEEEeecCCCCCC-----eEEEEEEEeecCcccHHHhcCCCC--CCCCcccccceeEEEEEe----
Confidence 5788998875433 567777888 999999999999999999988765 346889999999999999
Q ss_pred CCCCCCCCCCCCCCCCCEEEEecC-----------------------------------------------CCCCcccce
Q psy1959 87 SSSTEEDDEEDVLQVGDKVLALNK-----------------------------------------------ELLHGFSDQ 119 (296)
Q Consensus 87 ~~~~~~g~~v~~~~~Gd~V~~~~~-----------------------------------------------~~~g~~~~~ 119 (296)
|+++.++++||+|++... -..|+|++|
T Consensus 71 ------G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y 144 (365)
T cd08278 71 ------GSAVTGLKPGDHVVLSFASCGECANCLSGHPAYCENFFPLNFSGRRPDGSTPLSLDDGTPVHGHFFGQSSFATY 144 (365)
T ss_pred ------CCCcccCCCCCEEEEcccCCCCChHHhCCCcccccCcccccccccccCCcccccccCCcccccccccccceeeE
Confidence 999999999999985210 013889999
Q ss_pred EeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcc
Q psy1959 120 CVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSED 198 (296)
Q Consensus 120 ~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~ 198 (296)
+.++.++++++|+++++++++.+++++.+||.++.....++++++|+|+|+ |++|++++++| +..|+ .+++++++++
T Consensus 145 ~~v~~~~~~~iP~~~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~-g~vG~~~~~la-~~~G~~~v~~~~~~~~ 222 (365)
T cd08278 145 AVVHERNVVKVDKDVPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFGA-GAVGLAAVMAA-KIAGCTTIIAVDIVDS 222 (365)
T ss_pred EEecchhEEECCCCCCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCeEEEEeCCHH
Confidence 999999999999999999999999999999999888889999999999975 99999999999 67899 6888989999
Q ss_pred hHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEe
Q psy1959 199 KTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFT 261 (296)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~ 261 (296)
|.+.++++|++.++++.+ .++.+.+.+.+ ++++|+++||+|+ ..+..+++++ +.+|.+..
T Consensus 223 k~~~~~~~g~~~~i~~~~-~~~~~~v~~~~-~~~~d~vld~~g~~~~~~~~~~~l-~~~G~~v~ 283 (365)
T cd08278 223 RLELAKELGATHVINPKE-EDLVAAIREIT-GGGVDYALDTTGVPAVIEQAVDAL-APRGTLAL 283 (365)
T ss_pred HHHHHHHcCCcEEecCCC-cCHHHHHHHHh-CCCCcEEEECCCCcHHHHHHHHHh-ccCCEEEE
Confidence 999999999988888766 56777788877 6789999999997 6889999999 77776643
No 40
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=99.98 E-value=2.9e-30 Score=236.14 Aligned_cols=245 Identities=28% Similarity=0.309 Sum_probs=203.7
Q ss_pred cceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCC--CCCCCCCcCCCceeEEEEEEccC
Q psy1959 13 SDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGD--AKPTLPLVPGFEFSGTVIEVADT 85 (296)
Q Consensus 13 ~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~--~~~~~p~~~G~e~~G~V~~v~~~ 85 (296)
||++++++++.. .+.|.+.++ +|+||+.++++|++|+....|.+. ....+|.++|+|++|+|+++
T Consensus 1 ~ka~~~~~~~~~~~~~~~~~~~~~~~-----~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~v--- 72 (340)
T cd05284 1 MKAARLYEYGKPLRLEDVPVPEPGPG-----QVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEV--- 72 (340)
T ss_pred CeeeEeccCCCCceEEeCCCCCCCCC-----eEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEe---
Confidence 577888766443 466677778 999999999999999999988765 34456889999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEecC-------------------------CCCCcccceEeeeCCceEECCCCCCHHHHh
Q psy1959 86 KSSSTEEDDEEDVLQVGDKVLALNK-------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAA 140 (296)
Q Consensus 86 ~~~~~~~g~~v~~~~~Gd~V~~~~~-------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa 140 (296)
|+++..+++||+|+++.. ...|+|++|+.++.+.++++|+++++++++
T Consensus 73 -------G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~P~~ls~~~aa 145 (340)
T cd05284 73 -------GSGVDGLKEGDPVVVHPPWGCGTCRYCRRGEENYCENARFPGIGTDGGFAEYLLVPSRRLVKLPRGLDPVEAA 145 (340)
T ss_pred -------CCCCCcCcCCCEEEEcCCCCCCCChHHhCcCcccCCCCcccCccCCCcceeeEEecHHHeEECCCCCCHHHhh
Confidence 999999999999998641 124899999999999999999999999999
Q ss_pred hhccHHHHHHHHHHHH-cCCCCCcEEEEEcCCCcHHHHHHHHHHHhCC-CEEEEEeCCcchHHHHHhcCCcEEEEcCCch
Q psy1959 141 SLADSYSTAQIVFSRH-AKLKEKQTVLVTAAGGGLGLAAVDMATKIYK-AKVIGVCNSEDKTDLIRQKGAWAALTFTNEK 218 (296)
Q Consensus 141 ~l~~~~~ta~~~l~~~-~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g-~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~ 218 (296)
.++..+.+||+++... ..+.++++|+|+|+ |++|++++++| +..| .+|+++++++++.+.++++|++.++++++ .
T Consensus 146 ~l~~~~~ta~~~l~~~~~~~~~~~~vlI~g~-~~vg~~~~~~a-~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~ 222 (340)
T cd05284 146 PLADAGLTAYHAVKKALPYLDPGSTVVVIGV-GGLGHIAVQIL-RALTPATVIAVDRSEEALKLAERLGADHVLNASD-D 222 (340)
T ss_pred hhcchHHHHHHHHHHhcccCCCCCEEEEEcC-cHHHHHHHHHH-HHhCCCcEEEEeCCHHHHHHHHHhCCcEEEcCCc-c
Confidence 9999999999999766 46889999999995 77999999999 5677 79999999999999999999988888876 4
Q ss_pred hHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEeec---------ccceeeeeEEeccc
Q psy1959 219 SLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFTNE---------KSLVNKVLEVSGGK 277 (296)
Q Consensus 219 ~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~~~---------~~~~~k~~~i~g~~ 277 (296)
+.+.+++..++.++|+++|++|+ .....+++++ +.+|++..-. ...+.+++++.+..
T Consensus 223 -~~~~i~~~~~~~~~dvvld~~g~~~~~~~~~~~l-~~~g~~i~~g~~~~~~~~~~~~~~~~~~~~~~~ 289 (340)
T cd05284 223 -VVEEVRELTGGRGADAVIDFVGSDETLALAAKLL-AKGGRYVIVGYGGHGRLPTSDLVPTEISVIGSL 289 (340)
T ss_pred -HHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHh-hcCCEEEEEcCCCCCccCHHHhhhcceEEEEEe
Confidence 77788888777789999999997 7889999999 7777664221 11145667766653
No 41
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=99.98 E-value=3.1e-30 Score=237.42 Aligned_cols=224 Identities=21% Similarity=0.267 Sum_probs=186.2
Q ss_pred CCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCC--ceeEEEEEEccCCCCCCCCCCCCCCCCCCCEEEE
Q psy1959 30 LVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGF--EFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLA 107 (296)
Q Consensus 30 ~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~--e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V~~ 107 (296)
++++ |||||+.++++|+.|.....+.... ...|.++|+ |++|+|..+ |+++++|++||+|++
T Consensus 41 ~~~g-----evlVkv~a~~inp~~~~~~~~~~~~-~~~p~~~G~~~~~~G~v~~v----------g~~v~~~~~Gd~V~~ 104 (348)
T PLN03154 41 KGSG-----AFLVKNLYLSCDPYMRGRMRDFHDS-YLPPFVPGQRIEGFGVSKVV----------DSDDPNFKPGDLISG 104 (348)
T ss_pred CCCC-----eEEEEEEEEccCHHHHHhhhccCCC-CCCCcCCCCeeEeeEEEEEE----------ecCCCCCCCCCEEEe
Confidence 4677 9999999999999987654432221 235889997 889999999 999999999999987
Q ss_pred ecCCCCCcccceEeeeCCc--eEE--CCCCCCHH-HHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHH
Q psy1959 108 LNKELLHGFSDQCVVHTND--VFK--IPEKMTFE-HAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMA 182 (296)
Q Consensus 108 ~~~~~~g~~~~~~~v~~~~--~~~--iP~~~~~~-~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la 182 (296)
+ |+|+||.+++... +.+ +|++++++ ++|++++++.|||+++...+++++|++|+|+|++|++|++++|+|
T Consensus 105 ~-----~~~aey~~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~~~~~~~~g~~VlV~GaaG~vG~~aiqlA 179 (348)
T PLN03154 105 I-----TGWEEYSLIRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLA 179 (348)
T ss_pred c-----CCcEEEEEEeccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHH
Confidence 5 6799999999853 544 59999986 688899999999999988889999999999999999999999999
Q ss_pred HHhCCCEEEEEeCCcchHHHHH-hcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEEe
Q psy1959 183 TKIYKAKVIGVCNSEDKTDLIR-QKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTFT 261 (296)
Q Consensus 183 ~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~~ 261 (296)
+..|++|+++++++++.++++ ++|++.++++++..++.+.+++.++ .++|++||++|+..+..+++++ +.+|++..
T Consensus 180 -k~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~-~gvD~v~d~vG~~~~~~~~~~l-~~~G~iv~ 256 (348)
T PLN03154 180 -KLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFP-EGIDIYFDNVGGDMLDAALLNM-KIHGRIAV 256 (348)
T ss_pred -HHcCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCC-CCcEEEEECCCHHHHHHHHHHh-ccCCEEEE
Confidence 678999999999999999997 7999999988642367777777765 5899999999998899999999 77777642
Q ss_pred e----------------cccceeeeeEEeccc
Q psy1959 262 N----------------EKSLVNKVLEVSGGK 277 (296)
Q Consensus 262 ~----------------~~~~~~k~~~i~g~~ 277 (296)
- ...++.|++++.|++
T Consensus 257 ~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~ 288 (348)
T PLN03154 257 CGMVSLNSLSASQGIHNLYNLISKRIRMQGFL 288 (348)
T ss_pred ECccccCCCCCCCCcccHHHHhhccceEEEEE
Confidence 1 112556778888765
No 42
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=99.98 E-value=2.2e-30 Score=236.46 Aligned_cols=215 Identities=17% Similarity=0.238 Sum_probs=187.5
Q ss_pred CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCE
Q psy1959 25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDK 104 (296)
Q Consensus 25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~ 104 (296)
.|.|.|.++ ||+||+.++++|+.|...+.|.... ..+|.++|+|++|+|+++ |+++..|++||+
T Consensus 22 ~~~p~~~~~-----ev~Ikv~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~v----------G~~v~~~~~Gd~ 85 (336)
T TIGR02817 22 LPKPKPGGR-----DLLVEVKAISVNPVDTKVRARMAPE-AGQPKILGWDAAGVVVAV----------GDEVTLFKPGDE 85 (336)
T ss_pred cCCCCCCCC-----EEEEEEEEEEcChHHHHHHcCCCCC-CCCCcccceeeEEEEEEe----------CCCCCCCCCCCE
Confidence 677778888 9999999999999999988886543 456889999999999999 999999999999
Q ss_pred EEEecC-CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCC-----CcEEEEEcCCCcHHHHH
Q psy1959 105 VLALNK-ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKE-----KQTVLVTAAGGGLGLAA 178 (296)
Q Consensus 105 V~~~~~-~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~-----g~~vlI~Ga~g~vG~aa 178 (296)
|+++.. ...|+|++|++++.+.++++|+++++++++.++.++.+||+++....++++ |++|+|+|++|++|+++
T Consensus 86 V~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~ga~g~vg~~~ 165 (336)
T TIGR02817 86 VWYAGDIDRPGSNAEFHLVDERIVGHKPKSLSFAEAAALPLTSITAWELLFDRLGINDPVAGDKRALLIIGGAGGVGSIL 165 (336)
T ss_pred EEEcCCCCCCCcccceEEEcHHHcccCCCCCCHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCCCEEEEEcCCcHHHHHH
Confidence 998741 124899999999999999999999999999999999999999988888887 99999999999999999
Q ss_pred HHHHHHhC-CCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccC
Q psy1959 179 VDMATKIY-KAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWA 256 (296)
Q Consensus 179 ~~la~~~~-g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~ 256 (296)
+|+| +.+ |++|+++++++++.+.++++|++.++++.. ++.+.+.+. .++++|+++|++++ ..+..+++++ +.+
T Consensus 166 ~~~a-k~~~G~~vi~~~~~~~~~~~l~~~g~~~~~~~~~--~~~~~i~~~-~~~~vd~vl~~~~~~~~~~~~~~~l-~~~ 240 (336)
T TIGR02817 166 IQLA-RQLTGLTVIATASRPESQEWVLELGAHHVIDHSK--PLKAQLEKL-GLEAVSYVFSLTHTDQHFKEIVELL-APQ 240 (336)
T ss_pred HHHH-HHhCCCEEEEEcCcHHHHHHHHHcCCCEEEECCC--CHHHHHHHh-cCCCCCEEEEcCCcHHHHHHHHHHh-ccC
Confidence 9999 556 999999999999999999999988887543 566666664 45689999999865 7889999999 777
Q ss_pred ceEE
Q psy1959 257 ALTF 260 (296)
Q Consensus 257 g~~~ 260 (296)
|++.
T Consensus 241 G~~v 244 (336)
T TIGR02817 241 GRFA 244 (336)
T ss_pred CEEE
Confidence 7764
No 43
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=99.98 E-value=2.3e-30 Score=236.70 Aligned_cols=241 Identities=20% Similarity=0.233 Sum_probs=201.7
Q ss_pred cceEEecCCC-CC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCC
Q psy1959 13 SDLLLYNGSG-DA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKS 87 (296)
Q Consensus 13 ~~~~~~~~~~-~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~ 87 (296)
|+++++++++ +. .|.|.+.++ ||+||+.++++|++|+..+.|..+. ..+|.++|||++|+|+++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~~~-----~v~v~v~~~~i~~~d~~~~~g~~~~-~~~p~~~g~e~~G~v~~v----- 69 (333)
T cd08296 1 YKAVQVTEPGGPLELVERDVPLPGPG-----EVLIKVEACGVCHSDAFVKEGAMPG-LSYPRVPGHEVVGRIDAV----- 69 (333)
T ss_pred CeEEEEccCCCCceEEeccCCCCCCC-----EEEEEEEEEecchHHHHHHhCCCCC-CCCCcccCcceeEEEEEE-----
Confidence 6888888874 33 566777788 9999999999999999999886543 355889999999999999
Q ss_pred CCCCCCCCCCCCCCCCEEEEec--------------------------CCCCCcccceEeeeCCceEECCCCCCHHHHhh
Q psy1959 88 SSTEEDDEEDVLQVGDKVLALN--------------------------KELLHGFSDQCVVHTNDVFKIPEKMTFEHAAS 141 (296)
Q Consensus 88 ~~~~~g~~v~~~~~Gd~V~~~~--------------------------~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~ 141 (296)
|+++..+++||+|++.. ....|+|++|+.++...++++|+++++++++.
T Consensus 70 -----G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~~~~~~~g~~a~~~~v~~~~~~~lp~~~~~~~aa~ 144 (333)
T cd08296 70 -----GEGVSRWKVGDRVGVGWHGGHCGTCDACRRGDFVHCENGKVTGVTRDGGYAEYMLAPAEALARIPDDLDAAEAAP 144 (333)
T ss_pred -----CCCCccCCCCCEEEeccccCCCCCChhhhCcCcccCCCCCccCcccCCcceeEEEEchhheEeCCCCCCHHHhhh
Confidence 99999999999998621 11148999999999999999999999999999
Q ss_pred hccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHH
Q psy1959 142 LADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLV 221 (296)
Q Consensus 142 l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 221 (296)
++.++.+||+++.. .++.++++|+|+| +|++|++++++| +.+|++|+++++++++.+.++++|++.++++.+ .++.
T Consensus 145 l~~~~~ta~~~~~~-~~~~~~~~vlV~g-~g~iG~~~~~~a-~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~-~~~~ 220 (333)
T cd08296 145 LLCAGVTTFNALRN-SGAKPGDLVAVQG-IGGLGHLAVQYA-AKMGFRTVAISRGSDKADLARKLGAHHYIDTSK-EDVA 220 (333)
T ss_pred hhhhhHHHHHHHHh-cCCCCCCEEEEEC-CcHHHHHHHHHH-HHCCCeEEEEeCChHHHHHHHHcCCcEEecCCC-ccHH
Confidence 99999999999954 4899999999999 699999999999 678999999999999999999999988888766 5566
Q ss_pred HHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEe----------ecccceeeeeEEeccc
Q psy1959 222 NKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFT----------NEKSLVNKVLEVSGGK 277 (296)
Q Consensus 222 ~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~----------~~~~~~~k~~~i~g~~ 277 (296)
+.+.+. .++|+++|+.|. ..+..+++++ +.+|++.. +...++.+++++.+..
T Consensus 221 ~~~~~~---~~~d~vi~~~g~~~~~~~~~~~l-~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~ 283 (333)
T cd08296 221 EALQEL---GGAKLILATAPNAKAISALVGGL-APRGKLLILGAAGEPVAVSPLQLIMGRKSIHGWP 283 (333)
T ss_pred HHHHhc---CCCCEEEECCCchHHHHHHHHHc-ccCCEEEEEecCCCCCCcCHHHHhhcccEEEEeC
Confidence 666654 379999999975 7889999999 77776642 1123447888888765
No 44
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.98 E-value=4.1e-30 Score=235.97 Aligned_cols=243 Identities=28% Similarity=0.372 Sum_probs=194.5
Q ss_pred cceEEecCCCCC--------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCC-------------------CC
Q psy1959 13 SDLLLYNGSGDA--------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDA-------------------KP 65 (296)
Q Consensus 13 ~~~~~~~~~~~~--------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~-------------------~~ 65 (296)
|+++++.+++.. .+.|.|.++ +|+|||.++++|++|+....|.++. ..
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (350)
T cd08274 1 MRAVLLTGHGGLDKLVYRDDVPVPTPAPG-----EVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTL 75 (350)
T ss_pred CeEEEEeccCCccceeecccCCCCCCCCC-----eEEEEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCC
Confidence 455666554321 245556777 9999999999999999988876531 34
Q ss_pred CCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCEEEEec-----------------CCCCCcccceEeeeCCceE
Q psy1959 66 TLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALN-----------------KELLHGFSDQCVVHTNDVF 128 (296)
Q Consensus 66 ~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~-----------------~~~~g~~~~~~~v~~~~~~ 128 (296)
.+|.++|||++|+|+++ |+++.+|++||+|++.. ....|+|++|+.++...++
T Consensus 76 ~~p~~~G~e~~G~V~~v----------G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~ 145 (350)
T cd08274 76 SFPRIQGADIVGRVVAV----------GEGVDTARIGERVLVDPSIRDPPEDDPADIDYIGSERDGGFAEYTVVPAENAY 145 (350)
T ss_pred CCCcccCCcceEEEEEe----------CCCCCCCCCCCEEEEecCcCCCCccccccccccCCCCCccceEEEEecHHHce
Confidence 56889999999999999 99999999999999842 1124899999999999999
Q ss_pred ECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCC
Q psy1959 129 KIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGA 208 (296)
Q Consensus 129 ~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~ 208 (296)
++|++++..++++++.++.+||+++ ...++++|++++|+|++|++|++++++| +.+|+++++++.++ +.+.++++|+
T Consensus 146 ~ip~~~~~~~~a~l~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a-~~~g~~vi~~~~~~-~~~~~~~~g~ 222 (350)
T cd08274 146 PVNSPLSDVELATFPCSYSTAENML-ERAGVGAGETVLVTGASGGVGSALVQLA-KRRGAIVIAVAGAA-KEEAVRALGA 222 (350)
T ss_pred eCCCCCCHHHHHhcccHHHHHHHHH-hhcCCCCCCEEEEEcCCcHHHHHHHHHH-HhcCCEEEEEeCch-hhHHHHhcCC
Confidence 9999999999999999999999998 7789999999999999999999999999 67899999888665 8888899998
Q ss_pred cEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEEee-----------cccceeeeeEEeccc
Q psy1959 209 WAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTFTN-----------EKSLVNKVLEVSGGK 277 (296)
Q Consensus 209 ~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~~~-----------~~~~~~k~~~i~g~~ 277 (296)
+.+.+... ..+.+ ...+.++++|++||++|++.+..+++++ +.+|.+..- ...++.+++++.++.
T Consensus 223 ~~~~~~~~-~~~~~--~~~~~~~~~d~vi~~~g~~~~~~~~~~l-~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (350)
T cd08274 223 DTVILRDA-PLLAD--AKALGGEPVDVVADVVGGPLFPDLLRLL-RPGGRYVTAGAIAGPVVELDLRTLYLKDLTLFGST 298 (350)
T ss_pred eEEEeCCC-ccHHH--HHhhCCCCCcEEEecCCHHHHHHHHHHh-ccCCEEEEecccCCccccCCHHHhhhcceEEEEee
Confidence 65544433 33333 4556677899999999998899999999 777766421 112356667777643
No 45
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.98 E-value=3.7e-30 Score=236.88 Aligned_cols=227 Identities=25% Similarity=0.288 Sum_probs=196.0
Q ss_pred cceEEecCCCCC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCC
Q psy1959 13 SDLLLYNGSGDA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSS 88 (296)
Q Consensus 13 ~~~~~~~~~~~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~ 88 (296)
|+++++.++++. .|.|.+.++ ||+|||.++++|++|++...|.+.. ..+|.++|||++|+|+++
T Consensus 1 mka~~~~~~~~~~l~~~~~p~~~~~-----evlIkv~a~~i~~~d~~~~~g~~~~-~~~~~~~G~e~~G~V~~v------ 68 (351)
T cd08285 1 MKAFAMLGIGKVGWIEKPIPVCGPN-----DAIVRPTAVAPCTSDVHTVWGGAPG-ERHGMILGHEAVGVVEEV------ 68 (351)
T ss_pred CceEEEccCCccEEEECCCCCCCCC-----eEEEEEEEEEechhhHHHhcCCCCC-CCCCcccCcceEEEEEEe------
Confidence 678888887765 456667788 9999999999999999988876543 356889999999999999
Q ss_pred CCCCCCCCCCCCCCCEEEEecC----------------------------CCCCcccceEeeeCC--ceEECCCCCCHHH
Q psy1959 89 STEEDDEEDVLQVGDKVLALNK----------------------------ELLHGFSDQCVVHTN--DVFKIPEKMTFEH 138 (296)
Q Consensus 89 ~~~~g~~v~~~~~Gd~V~~~~~----------------------------~~~g~~~~~~~v~~~--~~~~iP~~~~~~~ 138 (296)
|+++.++++||+|++... ...|+|+||+.++.. .++++|++++.++
T Consensus 69 ----G~~v~~~~~Gd~V~~~~~~~~~~c~~c~~g~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~~~lP~~~~~~~ 144 (351)
T cd08285 69 ----GSEVKDFKPGDRVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKFSNFKDGVFAEYFHVNDADANLAPLPDGLTDEQ 144 (351)
T ss_pred ----cCCcCccCCCCEEEEcCcCCCCCCHHHHCcCcccCcCCCCCccccCCCCcceeEEEEcchhhCceEECCCCCCHHH
Confidence 999999999999997421 025899999999974 8999999999999
Q ss_pred HhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCCcEEEEcCCc
Q psy1959 139 AASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALTFTNE 217 (296)
Q Consensus 139 aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~ 217 (296)
++.++.++.+||+++ ...++++|++|+|+|+ |++|++++|+| +.+|+ .|+++++++++.+.++++|++.++++++
T Consensus 145 aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~-g~iG~~~~~la-k~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~- 220 (351)
T cd08285 145 AVMLPDMMSTGFHGA-ELANIKLGDTVAVFGI-GPVGLMAVAGA-RLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKN- 220 (351)
T ss_pred hhhhccchhhHHHHH-HccCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCC-
Confidence 999999999999997 6789999999999975 99999999999 67899 5888888999999999999988888876
Q ss_pred hhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE
Q psy1959 218 KSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF 260 (296)
Q Consensus 218 ~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~ 260 (296)
.++.+.+.+.+.++++|+++|++|+ +.+..+++++ +.+|++.
T Consensus 221 ~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l-~~~G~~v 263 (351)
T cd08285 221 GDVVEQILKLTGGKGVDAVIIAGGGQDTFEQALKVL-KPGGTIS 263 (351)
T ss_pred CCHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHh-hcCCEEE
Confidence 6777778887777789999999998 6889999999 7777663
No 46
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=99.97 E-value=4.5e-30 Score=235.43 Aligned_cols=227 Identities=29% Similarity=0.379 Sum_probs=196.4
Q ss_pred cceEEecCCCCC----CCCCCC-CCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCC
Q psy1959 13 SDLLLYNGSGDA----KPTLPL-VPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKS 87 (296)
Q Consensus 13 ~~~~~~~~~~~~----~~~p~~-~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~ 87 (296)
||++++.++++. .|.|.| .++ +|+||+.++++|+.|...+.|.++. .++|.++|+|++|+|+++
T Consensus 1 ~ka~~~~~~~~~~~~~~~~p~~~~~~-----~v~i~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~v----- 69 (347)
T cd05278 1 MKALVYLGPGKIGLEEVPDPKIQGPH-----DAIVRVTATSICGSDLHIYRGGVPG-AKHGMILGHEFVGEVVEV----- 69 (347)
T ss_pred CceEEEecCCceEEEEcCCCCCCCCC-----eEEEEEEEEEechhhHHHHcCCCCC-CCCCceeccceEEEEEEE-----
Confidence 567777776666 566777 778 9999999999999999999887754 456889999999999999
Q ss_pred CCCCCCCCCCCCCCCCEEEEecC----------------------------CCCCcccceEeeeCC--ceEECCCCCCHH
Q psy1959 88 SSTEEDDEEDVLQVGDKVLALNK----------------------------ELLHGFSDQCVVHTN--DVFKIPEKMTFE 137 (296)
Q Consensus 88 ~~~~~g~~v~~~~~Gd~V~~~~~----------------------------~~~g~~~~~~~v~~~--~~~~iP~~~~~~ 137 (296)
|+++.++++||+|++... ...|+|++|++++.+ .++++|++++.+
T Consensus 70 -----G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lP~~~~~~ 144 (347)
T cd05278 70 -----GSDVKRLKPGDRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGNRIDGGQAEYVRVPYADMNLAKIPDGLPDE 144 (347)
T ss_pred -----CCCccccCCCCEEEecCCCCCCCChhHhCcCcccCcCCCcccccccCCCCeeeEEEEecchhCeEEECCCCCCHH
Confidence 999999999999997210 114899999999997 899999999999
Q ss_pred HHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCCcEEEEcCC
Q psy1959 138 HAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALTFTN 216 (296)
Q Consensus 138 ~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~~~~~~~~~ 216 (296)
+++.++.++.+||+++ ...+++++++|+|.|+ |++|++++|+| +..|. +++++++++++.+.++++|++.++++++
T Consensus 145 ~aa~l~~~~~ta~~~~-~~~~~~~~~~VlI~g~-g~vg~~~iqla-k~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~ 221 (347)
T cd05278 145 DALMLSDILPTGFHGA-ELAGIKPGSTVAVIGA-GPVGLCAVAGA-RLLGAARIIAVDSNPERLDLAKEAGATDIINPKN 221 (347)
T ss_pred HHhhhcchhhheeehh-hhcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCc
Confidence 9999999999999998 7789999999999875 99999999999 56896 8988888888999999999888888876
Q ss_pred chhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE
Q psy1959 217 EKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF 260 (296)
Q Consensus 217 ~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~ 260 (296)
.++.+.++..++++++|++||++|+ +.+..+++++ +.+|++.
T Consensus 222 -~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l-~~~G~~v 264 (347)
T cd05278 222 -GDIVEQILELTGGRGVDCVIEAVGFEETFEQAVKVV-RPGGTIA 264 (347)
T ss_pred -chHHHHHHHHcCCCCCcEEEEccCCHHHHHHHHHHh-hcCCEEE
Confidence 6677888888777789999999998 6899999999 7777764
No 47
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=99.97 E-value=3.7e-30 Score=235.55 Aligned_cols=228 Identities=26% Similarity=0.356 Sum_probs=195.3
Q ss_pred cceEEecCCCCC--------CCCCCCCC-CCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCC----CCCcCCCceeEEE
Q psy1959 13 SDLLLYNGSGDA--------KPTLPLVP-GFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPT----LPLVPGFEFSGTV 79 (296)
Q Consensus 13 ~~~~~~~~~~~~--------~~~p~~~~-~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~----~p~~~G~e~~G~V 79 (296)
|+++++.+++.. .|.|.|.+ + +|+||+.++++|+.|...+.|..+.... +|.++|||++|+|
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~-----~v~v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V 75 (341)
T cd08290 1 AKALVYTEHGEPKEVLQLESYEIPPPGPPN-----EVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEV 75 (341)
T ss_pred CceEEEccCCCchhheEEeecCCCCCCCCC-----EEEEEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEE
Confidence 677777776652 45666666 7 9999999999999999999887643323 6789999999999
Q ss_pred EEEccCCCCCCCCCCCCCCCCCCCEEEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCC
Q psy1959 80 IEVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKL 159 (296)
Q Consensus 80 ~~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~ 159 (296)
+++ |+++..+++||+|++... ..|+|++|+.++.+.++++|+++++++++.++.++.+||+++.....+
T Consensus 76 ~~v----------G~~v~~~~~Gd~V~~~~~-~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~ 144 (341)
T cd08290 76 VKV----------GSGVKSLKPGDWVIPLRP-GLGTWRTHAVVPADDLIKVPNDVDPEQAATLSVNPCTAYRLLEDFVKL 144 (341)
T ss_pred EEe----------CCCCCCCCCCCEEEecCC-CCccchheEeccHHHeEeCCCCCCHHHHHHhhccHHHHHHHHHhhccc
Confidence 999 999989999999998742 148999999999999999999999999999999999999999877889
Q ss_pred CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc----chHHHHHhcCCcEEEEcCCch---hHHHHHHHHhCCCc
Q psy1959 160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE----DKTDLIRQKGAWAALTFTNEK---SLVNKVLEVSGGKY 232 (296)
Q Consensus 160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~----~~~~~~~~~g~~~~~~~~~~~---~~~~~i~~~~~~~g 232 (296)
++|++|+|+|++|++|++++++| +..|++++++++++ ++.++++++|++.+++++. . ++.+.+.....+ +
T Consensus 145 ~~g~~vlI~g~~g~vg~~~~~~a-~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~i~~~~~~-~ 221 (341)
T cd08290 145 QPGDWVIQNGANSAVGQAVIQLA-KLLGIKTINVVRDRPDLEELKERLKALGADHVLTEEE-LRSLLATELLKSAPGG-R 221 (341)
T ss_pred CCCCEEEEccchhHHHHHHHHHH-HHcCCeEEEEEcCCCcchhHHHHHHhcCCCEEEeCcc-cccccHHHHHHHHcCC-C
Confidence 99999999999999999999999 67899999988776 6688888899998887765 3 667777777666 8
Q ss_pred ccEEEECCCCccHHHHHHHhhccCceEE
Q psy1959 233 ANVVFEAVGGEDKTDLIRQKGAWAALTF 260 (296)
Q Consensus 233 ~d~vld~~g~~~~~~~~~~lg~~~g~~~ 260 (296)
+|++|||+|+.....+++++ +.+|.+.
T Consensus 222 ~d~vld~~g~~~~~~~~~~l-~~~G~~v 248 (341)
T cd08290 222 PKLALNCVGGKSATELARLL-SPGGTMV 248 (341)
T ss_pred ceEEEECcCcHhHHHHHHHh-CCCCEEE
Confidence 99999999998888899999 7777664
No 48
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=99.97 E-value=6.4e-30 Score=232.59 Aligned_cols=205 Identities=21% Similarity=0.260 Sum_probs=176.9
Q ss_pred CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCE
Q psy1959 25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDK 104 (296)
Q Consensus 25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~ 104 (296)
.|.|.|+++ ||+|||.+++||+.|.....+ ..++|.++|+|++|+|++. + ..+++||+
T Consensus 26 ~~~p~~~~~-----evlVkv~a~~in~~~~~~~~~----~~~~p~v~G~e~~G~V~~~----------~---~~~~~Gd~ 83 (329)
T cd08294 26 EELPPLKDG-----EVLCEALFLSVDPYMRPYSKR----LNEGDTMIGTQVAKVIESK----------N---SKFPVGTI 83 (329)
T ss_pred cCCCCCCCC-----cEEEEEEEEecCHHHhccccc----CCCCCcEecceEEEEEecC----------C---CCCCCCCE
Confidence 677888999 999999999999887542211 1246889999999999865 3 46999999
Q ss_pred EEEecCCCCCcccceEeeeCC---ceEECCCCCC-----HHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHH
Q psy1959 105 VLALNKELLHGFSDQCVVHTN---DVFKIPEKMT-----FEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGL 176 (296)
Q Consensus 105 V~~~~~~~~g~~~~~~~v~~~---~~~~iP~~~~-----~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~ 176 (296)
|+++ ++|++|++++.+ .++++|++++ ...+++++.+++|||+++.+.+++++|++|+|+|++|++|+
T Consensus 84 V~~~-----~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~vlI~ga~g~vG~ 158 (329)
T cd08294 84 VVAS-----FGWRTHTVSDGKDQPDLYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEICKPKAGETVVVNGAAGAVGS 158 (329)
T ss_pred EEee-----CCeeeEEEECCccccceEECCccccccCChHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHH
Confidence 9875 469999999999 9999999998 23334688999999999988899999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccC
Q psy1959 177 AAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWA 256 (296)
Q Consensus 177 aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~ 256 (296)
+++|+| +..|++|+++++++++.++++++|++.++++++ .++.+.+.+.++ .++|++||++|++.+..+++++ +.+
T Consensus 159 ~aiqlA-~~~G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~-~~~~~~v~~~~~-~gvd~vld~~g~~~~~~~~~~l-~~~ 234 (329)
T cd08294 159 LVGQIA-KIKGCKVIGCAGSDDKVAWLKELGFDAVFNYKT-VSLEEALKEAAP-DGIDCYFDNVGGEFSSTVLSHM-NDF 234 (329)
T ss_pred HHHHHH-HHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCC-ccHHHHHHHHCC-CCcEEEEECCCHHHHHHHHHhh-ccC
Confidence 999999 678999999999999999999999999998876 677788877765 6899999999998899999999 777
Q ss_pred ceEE
Q psy1959 257 ALTF 260 (296)
Q Consensus 257 g~~~ 260 (296)
|++.
T Consensus 235 G~iv 238 (329)
T cd08294 235 GRVA 238 (329)
T ss_pred CEEE
Confidence 7764
No 49
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=99.97 E-value=5.3e-30 Score=238.00 Aligned_cols=227 Identities=22% Similarity=0.224 Sum_probs=191.3
Q ss_pred cceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCC
Q psy1959 13 SDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKS 87 (296)
Q Consensus 13 ~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~ 87 (296)
++++++..+... .|.|.|.++ ||+||+.++++|++|++.+.|.+. ..+|.++|||++|+|+++
T Consensus 8 ~~a~~~~~~~~~~~l~~~p~p~~~~~-----~vlvkv~~~gi~~~D~~~~~g~~~--~~~p~v~G~e~~G~V~~v----- 75 (373)
T cd08299 8 CKAAVLWEPKKPFSIEEIEVAPPKAH-----EVRIKIVATGICRSDDHVVSGKLV--TPFPVILGHEAAGIVESV----- 75 (373)
T ss_pred eEEEEEecCCCCcEEEEeecCCCCCC-----EEEEEEEEEEcCcccHHHhcCCCC--CCCCccccccceEEEEEe-----
Confidence 777777765543 677778888 999999999999999999988763 356889999999999999
Q ss_pred CCCCCCCCCCCCCCCCEEEEecC--------------------------------------------C--CCCcccceEe
Q psy1959 88 SSTEEDDEEDVLQVGDKVLALNK--------------------------------------------E--LLHGFSDQCV 121 (296)
Q Consensus 88 ~~~~~g~~v~~~~~Gd~V~~~~~--------------------------------------------~--~~g~~~~~~~ 121 (296)
|+++..+++||+|+.+.. + ..|+|+||++
T Consensus 76 -----G~~v~~~~~Gd~V~~~~~~~c~~c~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~e~~~ 150 (373)
T cd08299 76 -----GEGVTTVKPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLMQDGTSRFTCKGKPIHHFLGTSTFSEYTV 150 (373)
T ss_pred -----CCCCccCCCCCEEEECCCCCCCCChhhhCCCcccCcCcccccccccccCCccccccCCcccccccCCCcccceEE
Confidence 999999999999987520 0 1388999999
Q ss_pred eeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchH
Q psy1959 122 VHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKT 200 (296)
Q Consensus 122 v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~ 200 (296)
++.+.++++|+++++++++.+.+++.+||+++.+.+++++|++|+|+|+ |++|++++++| +..|+ +|++++++++++
T Consensus 151 v~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~-g~vG~~~~~~a-~~~G~~~Vi~~~~~~~~~ 228 (373)
T cd08299 151 VDEIAVAKIDAAAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGL-GGVGLSAIMGC-KAAGASRIIAVDINKDKF 228 (373)
T ss_pred ecccceeeCCCCCChHHhheeccchHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCeEEEEcCCHHHH
Confidence 9999999999999999999999999999999878899999999999975 99999999999 66899 899999999999
Q ss_pred HHHHhcCCcEEEEcCCc-hhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceE
Q psy1959 201 DLIRQKGAWAALTFTNE-KSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALT 259 (296)
Q Consensus 201 ~~~~~~g~~~~~~~~~~-~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~ 259 (296)
+.++++|++.+++..+. .++.+.+.+.++ .++|+++|++|+ ..+..++..+.+.+|++
T Consensus 229 ~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~-~~~d~vld~~g~~~~~~~~~~~~~~~~G~~ 288 (373)
T cd08299 229 AKAKELGATECINPQDYKKPIQEVLTEMTD-GGVDFSFEVIGRLDTMKAALASCHEGYGVS 288 (373)
T ss_pred HHHHHcCCceEecccccchhHHHHHHHHhC-CCCeEEEECCCCcHHHHHHHHhhccCCCEE
Confidence 99999999888877541 236666777766 589999999997 67777777652345554
No 50
>PRK10083 putative oxidoreductase; Provisional
Probab=99.97 E-value=9.9e-30 Score=232.65 Aligned_cols=225 Identities=21% Similarity=0.298 Sum_probs=185.3
Q ss_pred cceEEecCCCCC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCC
Q psy1959 13 SDLLLYNGSGDA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSS 88 (296)
Q Consensus 13 ~~~~~~~~~~~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~ 88 (296)
|+++++++++.. .|.|.|.++ |++||+.++++|++|+..+.|.++. .++|.++|||++|+|+++
T Consensus 1 m~a~~~~~~~~~~~~~~~~p~~~~~-----~vlV~v~~~gi~~~d~~~~~g~~~~-~~~p~i~G~e~~G~V~~v------ 68 (339)
T PRK10083 1 MKSIVIEKPNSLAIEERPIPQPAAG-----EVRVKVKLAGICGSDSHIYRGHNPF-AKYPRVIGHEFFGVIDAV------ 68 (339)
T ss_pred CeEEEEecCCeeEEEeccCCCCCCC-----eEEEEEEEEEEcccchHHHcCCCCc-CCCCcccccceEEEEEEE------
Confidence 567777766544 577778888 9999999999999999999887654 356899999999999999
Q ss_pred CCCCCCCCCCCCCCCEEEEec-------------------------CCCCCcccceEeeeCCceEECCCCCCHHHHhhhc
Q psy1959 89 STEEDDEEDVLQVGDKVLALN-------------------------KELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLA 143 (296)
Q Consensus 89 ~~~~g~~v~~~~~Gd~V~~~~-------------------------~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~ 143 (296)
|+++..+++||+|+... ....|+|++|+.++..+++++|++++++.++ +.
T Consensus 69 ----G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~a~-~~ 143 (339)
T PRK10083 69 ----GEGVDAARIGERVAVDPVISCGHCYPCSIGKPNVCTSLVVLGVHRDGGFSEYAVVPAKNAHRIPDAIADQYAV-MV 143 (339)
T ss_pred ----CCCCccCCCCCEEEEccccCCCCCccccCcCcccCCCCceEEEccCCcceeeEEechHHeEECcCCCCHHHHh-hh
Confidence 99999999999998421 0114899999999999999999999998876 66
Q ss_pred cHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCE-EEEEeCCcchHHHHHhcCCcEEEEcCCchhHHH
Q psy1959 144 DSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAK-VIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVN 222 (296)
Q Consensus 144 ~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~-Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 222 (296)
.++.++|.++ +.+++++|++|+|+| .|++|++++|+|++.+|++ ++++++++++.+.++++|++.++++++ .++.+
T Consensus 144 ~~~~~a~~~~-~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~-~~~~~ 220 (339)
T PRK10083 144 EPFTIAANVT-GRTGPTEQDVALIYG-AGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQ-EPLGE 220 (339)
T ss_pred chHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCcc-ccHHH
Confidence 7888899655 788999999999999 5999999999994346985 777888899999999999988888765 45555
Q ss_pred HHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE
Q psy1959 223 KVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF 260 (296)
Q Consensus 223 ~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~ 260 (296)
.+.. .+.++|++||++|+ ..+..+++++ +.+|++.
T Consensus 221 ~~~~--~g~~~d~vid~~g~~~~~~~~~~~l-~~~G~~v 256 (339)
T PRK10083 221 ALEE--KGIKPTLIIDAACHPSILEEAVTLA-SPAARIV 256 (339)
T ss_pred HHhc--CCCCCCEEEECCCCHHHHHHHHHHh-hcCCEEE
Confidence 5533 23356799999996 6899999999 7777763
No 51
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=99.97 E-value=1.3e-29 Score=236.47 Aligned_cols=244 Identities=28% Similarity=0.349 Sum_probs=202.4
Q ss_pred cceEEecCCCCC----CCCCCCC-CCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCC
Q psy1959 13 SDLLLYNGSGDA----KPTLPLV-PGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKS 87 (296)
Q Consensus 13 ~~~~~~~~~~~~----~~~p~~~-~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~ 87 (296)
|++++++++++. .|.|.|. ++ +|+||+.++++|++|+..+.|.++. .++|.++|||++|+|+++
T Consensus 1 m~a~~~~~~~~~~~~~~~~p~~~~~~-----~v~i~v~~~~i~~~d~~~~~g~~~~-~~~p~~~G~e~~G~V~~v----- 69 (386)
T cd08283 1 MKALVWHGKGDVRVEEVPDPKIEDPT-----DAIVRVTATAICGSDLHLYHGYIPG-MKKGDILGHEFMGVVEEV----- 69 (386)
T ss_pred CeeEEEecCCCceEEeCCCCCCCCCC-----eEEEEEEEEecchhhhhhhcCCCCC-CCCCccccccceEEEEEe-----
Confidence 678888877666 5666664 78 9999999999999999999998765 456889999999999999
Q ss_pred CCCCCCCCCCCCCCCCEEEEecC---------------------------------------------CCCCcccceEee
Q psy1959 88 SSTEEDDEEDVLQVGDKVLALNK---------------------------------------------ELLHGFSDQCVV 122 (296)
Q Consensus 88 ~~~~~g~~v~~~~~Gd~V~~~~~---------------------------------------------~~~g~~~~~~~v 122 (296)
|++++++++||+|++... ...|+|++|+++
T Consensus 70 -----G~~v~~~~~Gd~V~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v 144 (386)
T cd08283 70 -----GPEVRNLKVGDRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAKLYGHAGAGIFGYSHLTGGYAGGQAEYVRV 144 (386)
T ss_pred -----CCCCCCCCCCCEEEEcCcCCCCCChhhcCCCcccCCCcccccccccccccccccccccccccCCCCCeeEEEEEc
Confidence 999999999999988531 024899999999
Q ss_pred eCC--ceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcch
Q psy1959 123 HTN--DVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDK 199 (296)
Q Consensus 123 ~~~--~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~ 199 (296)
+.+ .++++|++++++++++++..+++||+++ ..+.+++|++|+|+|+ |++|++++++| +..|+ +|+++++++++
T Consensus 145 ~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~g~-G~vG~~~~~la-~~~g~~~vi~~~~~~~~ 221 (386)
T cd08283 145 PFADVGPFKIPDDLSDEKALFLSDILPTGYHAA-ELAEVKPGDTVAVWGC-GPVGLFAARSA-KLLGAERVIAIDRVPER 221 (386)
T ss_pred ccccCeEEECCCCCCHHHHhhhccchhhhHHHH-hhccCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCEEEEEcCCHHH
Confidence 988 8999999999999999999999999999 7899999999999975 99999999999 66898 69999999999
Q ss_pred HHHHHhcCCcEEEEcCCch-hHHHHHHHHhCCCcccEEEECCCCc----------------------cHHHHHHHhhccC
Q psy1959 200 TDLIRQKGAWAALTFTNEK-SLVNKVLEVSGGKYANVVFEAVGGE----------------------DKTDLIRQKGAWA 256 (296)
Q Consensus 200 ~~~~~~~g~~~~~~~~~~~-~~~~~i~~~~~~~g~d~vld~~g~~----------------------~~~~~~~~lg~~~ 256 (296)
.+.+++++...++++.+ . ++.+.+.+.+.++++|++||++|++ .+..+++++ +++
T Consensus 222 ~~~~~~~~~~~vi~~~~-~~~~~~~l~~~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~ 299 (386)
T cd08283 222 LEMARSHLGAETINFEE-VDDVVEALRELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAV-RKG 299 (386)
T ss_pred HHHHHHcCCcEEEcCCc-chHHHHHHHHHcCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHh-ccC
Confidence 99999984446666655 4 4778888888777899999999853 578889999 777
Q ss_pred ceEEeec-----------ccceeeeeEEeccc
Q psy1959 257 ALTFTNE-----------KSLVNKVLEVSGGK 277 (296)
Q Consensus 257 g~~~~~~-----------~~~~~k~~~i~g~~ 277 (296)
|++.... ..++.+.+++.++.
T Consensus 300 G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~ 331 (386)
T cd08283 300 GTVSIIGVYGGTVNKFPIGAAMNKGLTLRMGQ 331 (386)
T ss_pred CEEEEEcCCCCCcCccCHHHHHhCCcEEEecc
Confidence 7664321 13455666666653
No 52
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=99.97 E-value=1.5e-29 Score=230.28 Aligned_cols=216 Identities=26% Similarity=0.384 Sum_probs=192.3
Q ss_pred CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCE
Q psy1959 25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDK 104 (296)
Q Consensus 25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~ 104 (296)
.|.|.|.++ ||+||+.++++|++|+....|.++. ..+|.++|+|++|+|+.+ |+++..+++||+
T Consensus 21 ~~~~~~~~~-----ev~i~v~~~gi~~~d~~~~~g~~~~-~~~~~~~g~e~~G~v~~v----------G~~v~~~~~Gd~ 84 (327)
T PRK10754 21 FTPADPAEN-----EVQVENKAIGINYIDTYIRSGLYPP-PSLPSGLGTEAAGVVSKV----------GSGVKHIKVGDR 84 (327)
T ss_pred ccCCCCCCC-----EEEEEEEEEEcCHHHhhhcCCCCCC-CCCCCccCcceEEEEEEe----------CCCCCCCCCCCE
Confidence 567778888 9999999999999999998887653 346889999999999999 999999999999
Q ss_pred EEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHH
Q psy1959 105 VLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATK 184 (296)
Q Consensus 105 V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~ 184 (296)
|+.... ..|+|++|+.++.+.++++|+++++++++.++..+.+||.++...+.+++|++++|+|+.|.+|++++++| +
T Consensus 85 V~~~~~-~~g~~~~~v~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~la-k 162 (327)
T PRK10754 85 VVYAQS-ALGAYSSVHNVPADKAAILPDAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWA-K 162 (327)
T ss_pred EEECCC-CCcceeeEEEcCHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCcHHHHHHHHHH-H
Confidence 986532 24889999999999999999999999999899999999999888889999999999998899999999999 6
Q ss_pred hCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEE
Q psy1959 185 IYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTF 260 (296)
Q Consensus 185 ~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~ 260 (296)
..|++|+++++++++.+.++++|++.+++.++ .++.+.+++.++++++|+++||+|+.....+++++ +.+|++.
T Consensus 163 ~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~d~vl~~~~~~~~~~~~~~l-~~~g~~v 236 (327)
T PRK10754 163 ALGAKLIGTVGSAQKAQRAKKAGAWQVINYRE-ENIVERVKEITGGKKVRVVYDSVGKDTWEASLDCL-QRRGLMV 236 (327)
T ss_pred HcCCEEEEEeCCHHHHHHHHHCCCCEEEcCCC-CcHHHHHHHHcCCCCeEEEEECCcHHHHHHHHHHh-ccCCEEE
Confidence 78999999999999999999999988887766 67788888888888999999999998888999999 7777664
No 53
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=99.97 E-value=2.2e-29 Score=230.55 Aligned_cols=229 Identities=27% Similarity=0.315 Sum_probs=198.4
Q ss_pred cceEEecCCC--CC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCC
Q psy1959 13 SDLLLYNGSG--DA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTK 86 (296)
Q Consensus 13 ~~~~~~~~~~--~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~ 86 (296)
|+++++.+++ +. .|.|.|.++ |++||+.++++|+.|...+.|.++.....|.++|+|++|+|+++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~-----~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~v---- 71 (341)
T cd08297 1 MKAAVVEEFGEKPYEVKDVPVPEPGPG-----EVLVKLEASGVCHTDLHAALGDWPVKPKLPLIGGHEGAGVVVAV---- 71 (341)
T ss_pred CceEEeeccCCCCceEEEeeCCCCCCC-----eEEEEEEEeecchhHHHHHcCCCCcCCCCCccCCcccceEEEEe----
Confidence 6888888766 33 566777788 99999999999999999988876544456778999999999999
Q ss_pred CCCCCCCCCCCCCCCCCEEEEecC--------------------------CCCCcccceEeeeCCceEECCCCCCHHHHh
Q psy1959 87 SSSTEEDDEEDVLQVGDKVLALNK--------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAA 140 (296)
Q Consensus 87 ~~~~~~g~~v~~~~~Gd~V~~~~~--------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa 140 (296)
|+++..+++||+|++... +..|+|++|+.++.+.++++|+++++.+++
T Consensus 72 ------G~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~lp~~~~~~~~a 145 (341)
T cd08297 72 ------GPGVSGLKVGDRVGVKWLYDACGKCEYCRTGDETLCPNQKNSGYTVDGTFAEYAIADARYVTPIPDGLSFEQAA 145 (341)
T ss_pred ------CCCCCCCCCCCEEEEecCCCCCCCCccccCCCcccCCCccccccccCCcceeEEEeccccEEECCCCCCHHHHH
Confidence 999989999999987520 014899999999999999999999999999
Q ss_pred hhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhH
Q psy1959 141 SLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSL 220 (296)
Q Consensus 141 ~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 220 (296)
.++..+.+||+++.. .+++++++++|+|+++++|++++++| +.+|++|+++++++++.+.++++|++.++++++ .++
T Consensus 146 ~l~~~~~ta~~~~~~-~~~~~~~~vlV~g~~~~vg~~~~~~a-~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~-~~~ 222 (341)
T cd08297 146 PLLCAGVTVYKALKK-AGLKPGDWVVISGAGGGLGHLGVQYA-KAMGLRVIAIDVGDEKLELAKELGADAFVDFKK-SDD 222 (341)
T ss_pred HHHcchHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHH-HHCCCeEEEEeCCHHHHHHHHHcCCcEEEcCCC-ccH
Confidence 999999999999855 58999999999999888999999999 678999999999999999999999988888876 577
Q ss_pred HHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE
Q psy1959 221 VNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF 260 (296)
Q Consensus 221 ~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~ 260 (296)
.+.+.+.++++++|+++|+.++ ..+..+++++ +.+|++.
T Consensus 223 ~~~~~~~~~~~~vd~vl~~~~~~~~~~~~~~~l-~~~g~~v 262 (341)
T cd08297 223 VEAVKELTGGGGAHAVVVTAVSAAAYEQALDYL-RPGGTLV 262 (341)
T ss_pred HHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHh-hcCCEEE
Confidence 7888888877899999997775 7889999999 7777664
No 54
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=99.97 E-value=4.6e-29 Score=226.20 Aligned_cols=229 Identities=28% Similarity=0.351 Sum_probs=193.0
Q ss_pred cceEEecCCCCC-------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCC--CCCCCCcCCCceeEEEEEEc
Q psy1959 13 SDLLLYNGSGDA-------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDA--KPTLPLVPGFEFSGTVIEVA 83 (296)
Q Consensus 13 ~~~~~~~~~~~~-------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~--~~~~p~~~G~e~~G~V~~v~ 83 (296)
|+++++.+++.. .+.|.+.++ +|+|++.++++|+.|+....|..+. ...+|.++|||++|+|+++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~- 74 (324)
T cd08244 1 MRAIRLHEFGPPEVLVPEDVPDPVPGPG-----QVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAV- 74 (324)
T ss_pred CeEEEEcCCCCccceEEeccCCCCCCCC-----EEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEe-
Confidence 456666554332 233445667 9999999999999999998876432 2345788999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCEEEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCc
Q psy1959 84 DTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQ 163 (296)
Q Consensus 84 ~~~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~ 163 (296)
|+++..+++||+|++......|+|++|+.++...++++|++++.+++++++..+.+||.. ....++++++
T Consensus 75 ---------G~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~a~~~~~~~~ta~~~-~~~~~~~~~~ 144 (324)
T cd08244 75 ---------GPGVDPAWLGRRVVAHTGRAGGGYAELAVADVDSLHPVPDGLDLEAAVAVVHDGRTALGL-LDLATLTPGD 144 (324)
T ss_pred ---------CCCCCCCCCCCEEEEccCCCCceeeEEEEEchHHeEeCCCCCCHHHHhhhcchHHHHHHH-HHhcCCCCCC
Confidence 999989999999999762123899999999999999999999999999999999999654 4778999999
Q ss_pred EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCc
Q psy1959 164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE 243 (296)
Q Consensus 164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~ 243 (296)
+++|+|++|++|++++++| +..|++|+++++++++.+.++++|++..++..+ .++.+.+.+..+++++|+++|++|+.
T Consensus 145 ~vlI~g~~~~~g~~~~~la-~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~d~vl~~~g~~ 222 (324)
T cd08244 145 VVLVTAAAGGLGSLLVQLA-KAAGATVVGAAGGPAKTALVRALGADVAVDYTR-PDWPDQVREALGGGGVTVVLDGVGGA 222 (324)
T ss_pred EEEEEcCCchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHcCCCEEEecCC-ccHHHHHHHHcCCCCceEEEECCChH
Confidence 9999999999999999999 678999999999999999999999988787766 56777788777778899999999998
Q ss_pred cHHHHHHHhhccCceEE
Q psy1959 244 DKTDLIRQKGAWAALTF 260 (296)
Q Consensus 244 ~~~~~~~~lg~~~g~~~ 260 (296)
....+++++ +.+|++.
T Consensus 223 ~~~~~~~~l-~~~g~~v 238 (324)
T cd08244 223 IGRAALALL-APGGRFL 238 (324)
T ss_pred hHHHHHHHh-ccCcEEE
Confidence 789999999 6666664
No 55
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=99.97 E-value=2e-29 Score=231.34 Aligned_cols=244 Identities=26% Similarity=0.311 Sum_probs=202.2
Q ss_pred cceEEecCCCCC----CCCCCC-CCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCC
Q psy1959 13 SDLLLYNGSGDA----KPTLPL-VPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKS 87 (296)
Q Consensus 13 ~~~~~~~~~~~~----~~~p~~-~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~ 87 (296)
|+++++++++.. .|.|+| .++ ||+||+.++++|+.|+..+.|.+.. ..+|.++|||++|+|+++
T Consensus 1 m~a~~~~~~~~~~~~~~~~p~~~~~~-----ev~v~v~a~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~~----- 69 (345)
T cd08286 1 MKALVYHGPGKISWEDRPKPTIQEPT-----DAIVKMLKTTICGTDLHILKGDVPT-VTPGRILGHEGVGVVEEV----- 69 (345)
T ss_pred CceEEEecCCceeEEecCCCCCCCCC-----eEEEEEEEeeecchhhHHHcCCCCC-CCCCceecccceEEEEEe-----
Confidence 567777766655 566664 567 9999999999999999999887654 345789999999999999
Q ss_pred CCCCCCCCCCCCCCCCEEEEecC--------------------------CCCCcccceEeeeCC--ceEECCCCCCHHHH
Q psy1959 88 SSTEEDDEEDVLQVGDKVLALNK--------------------------ELLHGFSDQCVVHTN--DVFKIPEKMTFEHA 139 (296)
Q Consensus 88 ~~~~~g~~v~~~~~Gd~V~~~~~--------------------------~~~g~~~~~~~v~~~--~~~~iP~~~~~~~a 139 (296)
|+++..+++||+|++... ...|+|++|+.++.. .++++|++++..++
T Consensus 70 -----G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lp~~~~~~~a 144 (345)
T cd08286 70 -----GSAVTNFKVGDRVLISCISSCGTCGYCRKGLYSHCESGGWILGNLIDGTQAEYVRIPHADNSLYKLPEGVDEEAA 144 (345)
T ss_pred -----ccCccccCCCCEEEECCcCCCCCChHHHCcCcccCCCcccccccccCCeeeeEEEcccccCceEECCCCCCHHHh
Confidence 999989999999987531 013889999999987 89999999999999
Q ss_pred hhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCC-CEEEEEeCCcchHHHHHhcCCcEEEEcCCch
Q psy1959 140 ASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYK-AKVIGVCNSEDKTDLIRQKGAWAALTFTNEK 218 (296)
Q Consensus 140 a~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g-~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~ 218 (296)
+.++.++.+||.++....++.++++++|+|+ |++|++++|+| +.+| .+|+++++++++.+.++++|++.++++++ .
T Consensus 145 a~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~-g~~g~~~~~~a-~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~-~ 221 (345)
T cd08286 145 VMLSDILPTGYECGVLNGKVKPGDTVAIVGA-GPVGLAALLTA-QLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAK-G 221 (345)
T ss_pred hhccchhHHHHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCeEEEEcCCHHHHHHHHHhCCCceecccc-c
Confidence 9999999999998777889999999999886 99999999999 6789 79999888888999999999988888876 5
Q ss_pred hHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEee----------cccceeeeeEEecc
Q psy1959 219 SLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFTN----------EKSLVNKVLEVSGG 276 (296)
Q Consensus 219 ~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~~----------~~~~~~k~~~i~g~ 276 (296)
++.+.+.+.+.++++|++||++|+ ..+..+++++ +.+|++..- ...++.+++++.+.
T Consensus 222 ~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l-~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~ 289 (345)
T cd08286 222 DAIEQVLELTDGRGVDVVIEAVGIPATFELCQELV-APGGHIANVGVHGKPVDLHLEKLWIKNITITTG 289 (345)
T ss_pred cHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhc-cCCcEEEEecccCCCCCcCHHHHhhcCcEEEee
Confidence 677777777777789999999997 6788899999 777766421 12235567777653
No 56
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=99.97 E-value=6.4e-29 Score=225.36 Aligned_cols=243 Identities=22% Similarity=0.313 Sum_probs=197.0
Q ss_pred cceEEecCCCC---C----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccC
Q psy1959 13 SDLLLYNGSGD---A----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADT 85 (296)
Q Consensus 13 ~~~~~~~~~~~---~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~ 85 (296)
|++++++.+++ . .|.|.+.++ +|+||+.++++|++|+....|.++....+|.++|||++|+|+++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~-----~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~--- 72 (325)
T cd05280 1 FKALVVEEQDGGVSLFLRTLPLDDLPEG-----DVLIRVHYSSLNYKDALAATGNGGVTRNYPHTPGIDAAGTVVSS--- 72 (325)
T ss_pred CceEEEcccCCCCcceEEeCCCCCCCCC-----eEEEEEEEeecChHHHHHhcCCCCCCCCCCCccCcccEEEEEEe---
Confidence 67888888774 2 567777888 99999999999999999998876654556889999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEecC----CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCC--
Q psy1959 86 KSSSTEEDDEEDVLQVGDKVLALNK----ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKL-- 159 (296)
Q Consensus 86 ~~~~~~~g~~v~~~~~Gd~V~~~~~----~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~-- 159 (296)
+ +..+++||+|++... ...|+|++|++++.+.++++|+++++++++.+++.+.+||.++......
T Consensus 73 -------~--~~~~~~Gd~V~~~~~~~g~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~ 143 (325)
T cd05280 73 -------D--DPRFREGDEVLVTGYDLGMNTDGGFAEYVRVPADWVVPLPEGLSLREAMILGTAGFTAALSVHRLEDNGQ 143 (325)
T ss_pred -------C--CCCCCCCCEEEEcccccCCCCCceeEEEEEEchhhEEECCCCCCHHHHHhhHHHHHHHHHHHHHHhhccC
Confidence 4 346999999998631 1148999999999999999999999999999999999999998665433
Q ss_pred C-CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959 160 K-EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFE 238 (296)
Q Consensus 160 ~-~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld 238 (296)
. .+++|+|+|++|++|++++++| +.+|++|+++++++++.+.++++|++.+++.++ . ...+.+...++++|+++|
T Consensus 144 ~~~~~~vlI~g~~g~vg~~~~~~a-~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~--~~~~~~~~~~~~~d~vi~ 219 (325)
T cd05280 144 TPEDGPVLVTGATGGVGSIAVAIL-AKLGYTVVALTGKEEQADYLKSLGASEVLDRED-L--LDESKKPLLKARWAGAID 219 (325)
T ss_pred CCCCCEEEEECCccHHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHhcCCcEEEcchh-H--HHHHHHHhcCCCccEEEE
Confidence 5 4579999999999999999999 678999999999999999999999988776643 2 223334444567999999
Q ss_pred CCCCccHHHHHHHhhccCceEEee-----------cccceeeeeEEeccc
Q psy1959 239 AVGGEDKTDLIRQKGAWAALTFTN-----------EKSLVNKVLEVSGGK 277 (296)
Q Consensus 239 ~~g~~~~~~~~~~lg~~~g~~~~~-----------~~~~~~k~~~i~g~~ 277 (296)
++|++.+..+++++ +.+|++... ...++.+++++.+..
T Consensus 220 ~~~~~~~~~~~~~l-~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (325)
T cd05280 220 TVGGDVLANLLKQT-KYGGVVASCGNAAGPELTTTVLPFILRGVSLLGID 268 (325)
T ss_pred CCchHHHHHHHHhh-cCCCEEEEEecCCCCccccccchheeeeeEEEEEE
Confidence 99999999999999 777766421 112346777777754
No 57
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=99.97 E-value=2.8e-29 Score=228.51 Aligned_cols=225 Identities=29% Similarity=0.380 Sum_probs=194.9
Q ss_pred CcceEEecCCCC--C-------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEE
Q psy1959 12 SSDLLLYNGSGD--A-------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEV 82 (296)
Q Consensus 12 ~~~~~~~~~~~~--~-------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v 82 (296)
+|+++++++++. + .+.|.|.++ |++||+.++++|+.|+....|.+.....+|.++|+|++|+|+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----ev~i~v~~~gi~~~d~~~~~g~~~~~~~~p~~~g~e~~G~v~~v 75 (329)
T cd08250 1 SFRKLVVHRLSPNFREATSIVDVPVPLPGPG-----EVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAV 75 (329)
T ss_pred CceEEEeccCCCCcccCceEEecCCCCCCCC-----EEEEEEEEEecCHHHHHHHhCCCCCCCCCCcccCceeEEEEEEE
Confidence 488888888777 2 455667778 99999999999999999988876544567889999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCEEEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCC
Q psy1959 83 ADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEK 162 (296)
Q Consensus 83 ~~~~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g 162 (296)
|+++..+++||+|++... |+|++|++++.+.++++|++. .+++.++.++.+||+++.+..++++|
T Consensus 76 ----------G~~v~~~~~Gd~V~~~~~---g~~~s~~~v~~~~~~~ip~~~--~~~a~l~~~~~ta~~~l~~~~~~~~~ 140 (329)
T cd08250 76 ----------GEGVTDFKVGDAVATMSF---GAFAEYQVVPARHAVPVPELK--PEVLPLLVSGLTASIALEEVGEMKSG 140 (329)
T ss_pred ----------CCCCCCCCCCCEEEEecC---cceeEEEEechHHeEECCCCc--chhhhcccHHHHHHHHHHHhcCCCCC
Confidence 999989999999999865 899999999999999999973 46677999999999999888899999
Q ss_pred cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959 163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG 242 (296)
Q Consensus 163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~ 242 (296)
++++|+|++|.+|++++++| +..|++|+++++++++.+.++++|++.+++..+ .++.+.+....+ +++|+++|++|+
T Consensus 141 ~~vlI~ga~g~ig~~~~~~a-~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~-~~~~~~~~~~~~-~~vd~v~~~~g~ 217 (329)
T cd08250 141 ETVLVTAAAGGTGQFAVQLA-KLAGCHVIGTCSSDEKAEFLKSLGCDRPINYKT-EDLGEVLKKEYP-KGVDVVYESVGG 217 (329)
T ss_pred CEEEEEeCccHHHHHHHHHH-HHcCCeEEEEeCcHHHHHHHHHcCCceEEeCCC-ccHHHHHHHhcC-CCCeEEEECCcH
Confidence 99999999999999999999 668999999999999999999999888777665 556666666554 689999999999
Q ss_pred ccHHHHHHHhhccCceEE
Q psy1959 243 EDKTDLIRQKGAWAALTF 260 (296)
Q Consensus 243 ~~~~~~~~~lg~~~g~~~ 260 (296)
..+..+++++ +.+|++.
T Consensus 218 ~~~~~~~~~l-~~~g~~v 234 (329)
T cd08250 218 EMFDTCVDNL-ALKGRLI 234 (329)
T ss_pred HHHHHHHHHh-ccCCeEE
Confidence 8899999999 7777663
No 58
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=99.97 E-value=3e-29 Score=234.43 Aligned_cols=235 Identities=21% Similarity=0.298 Sum_probs=193.5
Q ss_pred CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCC---------CCCCCCcCCCceeEEEEEEccCCCCCCCCCCC
Q psy1959 25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDA---------KPTLPLVPGFEFSGTVIEVADTKSSSTEEDDE 95 (296)
Q Consensus 25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~---------~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~ 95 (296)
.|.|.+.++ ||+||+.+++||++|++...|.... ....+.++|||++|+|+++ |++
T Consensus 35 ~~~p~l~~~-----evlI~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~v----------G~~ 99 (393)
T cd08246 35 VPVPELGPG-----EVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGSDASGIVWAV----------GEG 99 (393)
T ss_pred cCCCCCCCC-----EEEEEEEEEeeccchhhhhcCCCccccccccccCCCCCccccccceEEEEEEe----------CCC
Confidence 577778888 9999999999999999887764110 0112358999999999999 999
Q ss_pred CCCCCCCCEEEEecC--------------------------CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHH
Q psy1959 96 EDVLQVGDKVLALNK--------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTA 149 (296)
Q Consensus 96 v~~~~~Gd~V~~~~~--------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta 149 (296)
++.+++||+|++... ...|+|++|++++...++++|+++++++++.+++++.+|
T Consensus 100 v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~g~~a~y~~v~~~~l~~iP~~l~~~~aa~l~~~~~tA 179 (393)
T cd08246 100 VKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRIWGYETNYGSFAQFALVQATQLMPKPKHLSWEEAAAYMLVGATA 179 (393)
T ss_pred CCcCCCCCEEEEeccccccCcccccccccccccccccccccCCCCcceeEEEechHHeEECCCCCCHHHHhhhcccHHHH
Confidence 999999999998642 013899999999999999999999999999999999999
Q ss_pred HHHHHHH--cCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCc----------
Q psy1959 150 QIVFSRH--AKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNE---------- 217 (296)
Q Consensus 150 ~~~l~~~--~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~---------- 217 (296)
|+++... ++++++++|+|+|++|++|++++++| +.+|++++++++++++.+.++++|++.+++.++.
T Consensus 180 ~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~la-k~~G~~vv~~~~s~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~ 258 (393)
T cd08246 180 YRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLA-RAAGANPVAVVSSEEKAEYCRALGAEGVINRRDFDHWGVLPDVN 258 (393)
T ss_pred HHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHH-HHcCCeEEEEeCCHHHHHHHHHcCCCEEEccccccccccccccc
Confidence 9998655 78899999999999999999999999 6789999999999999999999999888775331
Q ss_pred -----------hhHHHHHHHHhCCC-cccEEEECCCCccHHHHHHHhhccCceEEee-----------cccceeeeeEEe
Q psy1959 218 -----------KSLVNKVLEVSGGK-YANVVFEAVGGEDKTDLIRQKGAWAALTFTN-----------EKSLVNKVLEVS 274 (296)
Q Consensus 218 -----------~~~~~~i~~~~~~~-g~d~vld~~g~~~~~~~~~~lg~~~g~~~~~-----------~~~~~~k~~~i~ 274 (296)
..+.+.+.++++++ ++|++||++|+..+..+++++ +.+|++... ...+..++.++.
T Consensus 259 ~~~~~~~~~~~~~~~~~v~~l~~~~~g~d~vid~~g~~~~~~~~~~l-~~~G~~v~~g~~~~~~~~~~~~~l~~~~~~i~ 337 (393)
T cd08246 259 SEAYTAWTKEARRFGKAIWDILGGREDPDIVFEHPGRATFPTSVFVC-DRGGMVVICAGTTGYNHTYDNRYLWMRQKRIQ 337 (393)
T ss_pred chhhhhhhhccchHHHHHHHHhCCCCCCeEEEECCchHhHHHHHHHh-ccCCEEEEEcccCCCCCCCcHHHHhhheeEEE
Confidence 13556777888777 899999999998899999999 766766331 123445666666
Q ss_pred cc
Q psy1959 275 GG 276 (296)
Q Consensus 275 g~ 276 (296)
++
T Consensus 338 g~ 339 (393)
T cd08246 338 GS 339 (393)
T ss_pred ec
Confidence 65
No 59
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=99.97 E-value=4e-29 Score=229.89 Aligned_cols=226 Identities=23% Similarity=0.362 Sum_probs=191.0
Q ss_pred cceEEecCCCCC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCC--------CCCCCcCCCceeEEEE
Q psy1959 13 SDLLLYNGSGDA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAK--------PTLPLVPGFEFSGTVI 80 (296)
Q Consensus 13 ~~~~~~~~~~~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~--------~~~p~~~G~e~~G~V~ 80 (296)
||++++.++++. .|.|++.++ +|+||+.++++|+.|+....|..... ..+|.++|||++|+|+
T Consensus 1 mka~~~~~~~~~~~~~~~~p~~~~~-----~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~ 75 (350)
T cd08256 1 MRAVVCHGPQDYRLEEVPVPRPGPG-----EILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVV 75 (350)
T ss_pred CeeEEEecCCceEEEECCCCCCCCC-----eEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEE
Confidence 577888777655 577888889 99999999999999999888764210 1457789999999999
Q ss_pred EEccCCCCCCCCCCCCC--CCCCCCEEEE---------------------------ecCCCCCcccceEeeeCC-ceEEC
Q psy1959 81 EVADTKSSSTEEDDEED--VLQVGDKVLA---------------------------LNKELLHGFSDQCVVHTN-DVFKI 130 (296)
Q Consensus 81 ~v~~~~~~~~~~g~~v~--~~~~Gd~V~~---------------------------~~~~~~g~~~~~~~v~~~-~~~~i 130 (296)
++ |+++. +|++||+|++ +.....|+|++|+.++++ .++++
T Consensus 76 ~v----------G~~v~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~l 145 (350)
T cd08256 76 EL----------GEGAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDLYGFQNNVNGGMAEYMRFPKEAIVHKV 145 (350)
T ss_pred Ee----------CCCcccCCCCCCCEEEECCcCCCCCChHHhCcCcccCcCccceeeccCCCCcceeeEEcccccceEEC
Confidence 99 99998 8999999987 211124899999999988 57899
Q ss_pred CCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCCc
Q psy1959 131 PEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAW 209 (296)
Q Consensus 131 P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~~ 209 (296)
|+++++++++.+ .++.++|.++ +.+++++|++|+|.| .|++|++++++| +.+|+ .++++++++++.+.++++|++
T Consensus 146 P~~~~~~~aa~~-~~~~ta~~a~-~~~~~~~g~~vlI~g-~g~vG~~~~~~a-~~~G~~~v~~~~~~~~~~~~~~~~g~~ 221 (350)
T cd08256 146 PDDIPPEDAILI-EPLACALHAV-DRANIKFDDVVVLAG-AGPLGLGMIGAA-RLKNPKKLIVLDLKDERLALARKFGAD 221 (350)
T ss_pred CCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHH-HHcCCcEEEEEcCCHHHHHHHHHcCCc
Confidence 999999999988 8999999998 788999999999955 599999999999 66887 577788888899999999998
Q ss_pred EEEEcCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceE
Q psy1959 210 AALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALT 259 (296)
Q Consensus 210 ~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~ 259 (296)
.+++++. .++.+.+.+.++++++|+++|++|+ ..+..+++++ +.+|++
T Consensus 222 ~v~~~~~-~~~~~~~~~~~~~~~vdvvld~~g~~~~~~~~~~~l-~~~G~~ 270 (350)
T cd08256 222 VVLNPPE-VDVVEKIKELTGGYGCDIYIEATGHPSAVEQGLNMI-RKLGRF 270 (350)
T ss_pred EEecCCC-cCHHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHh-hcCCEE
Confidence 8887765 6777788888877889999999996 6788899999 777766
No 60
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=99.97 E-value=2.6e-29 Score=231.07 Aligned_cols=228 Identities=23% Similarity=0.262 Sum_probs=193.7
Q ss_pred cceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCC-----------CCCCCCcCCCcee
Q psy1959 13 SDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDA-----------KPTLPLVPGFEFS 76 (296)
Q Consensus 13 ~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~-----------~~~~p~~~G~e~~ 76 (296)
|+++++..++.. .|.|++.++ ||+||+.++++|++|+..+.|.++. ...+|.++|+|++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~p~~~~~-----ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~ 75 (350)
T cd08240 1 MKAAAVVEPGKPLEEVEIDTPKPPGT-----EVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIV 75 (350)
T ss_pred CeeEEeccCCCCceEEecCCCCCCCC-----eEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCccccccee
Confidence 567777655543 577778888 9999999999999999998886532 2345678999999
Q ss_pred EEEEEEccCCCCCCCCCCCCCCCCCCCEEEEecC-------------------------CCCCcccceEeeeCCceEECC
Q psy1959 77 GTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNK-------------------------ELLHGFSDQCVVHTNDVFKIP 131 (296)
Q Consensus 77 G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~-------------------------~~~g~~~~~~~v~~~~~~~iP 131 (296)
|+|+++ |++++.+++||+|+++.. ...|+|++|+.++.+.++++|
T Consensus 76 G~V~~v----------G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p 145 (350)
T cd08240 76 GEVVAV----------GPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRALGIFQDGGYAEYVIVPHSRYLVDP 145 (350)
T ss_pred EEEEee----------CCCCCCCCCCCEEEECCcCCCCCChHHHCcCcccCCCCCceeeeccCcceeeEEecHHHeeeCC
Confidence 999999 999999999999998621 024899999999999999999
Q ss_pred CCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCCcE
Q psy1959 132 EKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWA 210 (296)
Q Consensus 132 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~~~ 210 (296)
+++++.+++.+.+.+.+||+++.....++++++|+|+| .|++|++++|+| +..|+ +|++++.++++.+.++++|++.
T Consensus 146 ~~~s~~~aa~l~~~~~tA~~~~~~~~~~~~~~~vlI~g-~g~vg~~~~~~a-~~~G~~~v~~~~~~~~~~~~~~~~g~~~ 223 (350)
T cd08240 146 GGLDPALAATLACSGLTAYSAVKKLMPLVADEPVVIIG-AGGLGLMALALL-KALGPANIIVVDIDEAKLEAAKAAGADV 223 (350)
T ss_pred CCCCHHHeehhhchhhhHHHHHHhcccCCCCCEEEEEC-CcHHHHHHHHHH-HHcCCCeEEEEeCCHHHHHHHHHhCCcE
Confidence 99999999999999999999997777777899999997 499999999999 67899 7889988999999999999987
Q ss_pred EEEcCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE
Q psy1959 211 ALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF 260 (296)
Q Consensus 211 ~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~ 260 (296)
+++.++ .++.+.+.+..++ ++|++||++|. ..+..+++++ +.+|++.
T Consensus 224 ~~~~~~-~~~~~~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l-~~~g~~v 271 (350)
T cd08240 224 VVNGSD-PDAAKRIIKAAGG-GVDAVIDFVNNSATASLAFDIL-AKGGKLV 271 (350)
T ss_pred EecCCC-ccHHHHHHHHhCC-CCcEEEECCCCHHHHHHHHHHh-hcCCeEE
Confidence 777765 5666777777665 89999999996 7899999999 7777774
No 61
>KOG1198|consensus
Probab=99.97 E-value=1.5e-29 Score=230.85 Aligned_cols=212 Identities=29% Similarity=0.366 Sum_probs=187.0
Q ss_pred CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCC---CCCCcCCCceeEE---EEEEccCCCCCCCCC-CCCC
Q psy1959 25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKP---TLPLVPGFEFSGT---VIEVADTKSSSTEED-DEED 97 (296)
Q Consensus 25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~---~~p~~~G~e~~G~---V~~v~~~~~~~~~~g-~~v~ 97 (296)
.|.|.|+++ ++++++.++++|+.|+.++.|.++... .+|.+.+.++.|+ +..+ | +.+.
T Consensus 25 ~~iP~~~~~-----~~~i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~----------g~~~~~ 89 (347)
T KOG1198|consen 25 VPIPEPEDG-----EVLIKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESV----------GDDVVG 89 (347)
T ss_pred ccCCCCCCC-----ceEEEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEecc----------cccccc
Confidence 788889999 999999999999999999999888766 6786555555554 4444 5 4566
Q ss_pred CCCCCCEEEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHc------CCCCCcEEEEEcCC
Q psy1959 98 VLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHA------KLKEKQTVLVTAAG 171 (296)
Q Consensus 98 ~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~------~~~~g~~vlI~Ga~ 171 (296)
.+..||.+..... .|+|+||+++|...++++|++++++++|+++.++.|||.++.... +.++|++|||+|++
T Consensus 90 ~~~~g~~~~~~~~--~g~~aey~v~p~~~~~~~P~~l~~~~aa~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggs 167 (347)
T KOG1198|consen 90 GWVHGDAVVAFLS--SGGLAEYVVVPEKLLVKIPESLSFEEAAALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGS 167 (347)
T ss_pred ceEeeeEEeeccC--CCceeeEEEcchhhccCCCCccChhhhhcCchHHHHHHHHHHhccccccccccCCCCeEEEEeCC
Confidence 7888988888777 799999999999999999999999999999999999999999999 89999999999999
Q ss_pred CcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHH
Q psy1959 172 GGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQ 251 (296)
Q Consensus 172 g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~ 251 (296)
|++|++++|+| +..++..+++++++++.++++++|++.+++|++ .++.+.+...+ +.++|+||||+|+.....+..+
T Consensus 168 ggVG~~aiQlA-k~~~~~~v~t~~s~e~~~l~k~lGAd~vvdy~~-~~~~e~~kk~~-~~~~DvVlD~vg~~~~~~~~~~ 244 (347)
T KOG1198|consen 168 GGVGTAAIQLA-KHAGAIKVVTACSKEKLELVKKLGADEVVDYKD-ENVVELIKKYT-GKGVDVVLDCVGGSTLTKSLSC 244 (347)
T ss_pred cHHHHHHHHHH-HhcCCcEEEEEcccchHHHHHHcCCcEeecCCC-HHHHHHHHhhc-CCCccEEEECCCCCccccchhh
Confidence 99999999999 566776677777999999999999999999999 89999999988 7899999999999888888888
Q ss_pred hhccC
Q psy1959 252 KGAWA 256 (296)
Q Consensus 252 lg~~~ 256 (296)
+..++
T Consensus 245 l~~~g 249 (347)
T KOG1198|consen 245 LLKGG 249 (347)
T ss_pred hccCC
Confidence 83333
No 62
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=99.97 E-value=4.3e-29 Score=231.23 Aligned_cols=227 Identities=25% Similarity=0.328 Sum_probs=196.1
Q ss_pred cceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCC
Q psy1959 13 SDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKS 87 (296)
Q Consensus 13 ~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~ 87 (296)
|+++++..++.. .|.|.+.++ ||+||+.++++|++|+....|.++. .+|.++|||++|+|+++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~-----~v~v~v~~~~l~~~d~~~~~~~~~~--~~p~~~g~e~~G~v~~v----- 68 (367)
T cd08263 1 MKAAVLKGPNPPLTIEEIPVPRPKEG-----EILIRVAACGVCHSDLHVLKGELPF--PPPFVLGHEISGEVVEV----- 68 (367)
T ss_pred CeeEEEecCCCCcEEEEeeCCCCCCC-----eEEEEEEEeeeCcchHHHhcCCCCC--CCCcccccccceEEEEe-----
Confidence 567777766443 566677778 9999999999999999998887653 56889999999999999
Q ss_pred CCCCCCCCCCC---CCCCCEEEEecC-----------------------------------------------CCCCccc
Q psy1959 88 SSTEEDDEEDV---LQVGDKVLALNK-----------------------------------------------ELLHGFS 117 (296)
Q Consensus 88 ~~~~~g~~v~~---~~~Gd~V~~~~~-----------------------------------------------~~~g~~~ 117 (296)
|+++.+ +++||+|++... ...|+|+
T Consensus 69 -----G~~~~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 143 (367)
T cd08263 69 -----GPNVENPYGLSVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRLFRLDGGPVYMYSMGGLA 143 (367)
T ss_pred -----CCCCCCCCcCCCCCEEEEcCCCCCCCChHHhCcCcccCcCccccccccccccCCcccccccCCCccccccCCcce
Confidence 998888 999999998310 0148999
Q ss_pred ceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCE-EEEEeCC
Q psy1959 118 DQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAK-VIGVCNS 196 (296)
Q Consensus 118 ~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~-Vi~~~~~ 196 (296)
+|+.++.+.++++|+++++.++++++.++.+||.++.....+.++++++|+| +|++|++++++| +..|++ +++++.+
T Consensus 144 ~~~~~~~~~~~~~P~~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g-~g~vG~~~~~la-k~~G~~~vi~~~~s 221 (367)
T cd08263 144 EYAVVPATALAPLPESLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIG-VGGVGSSAIQLA-KAFGASPIIAVDVR 221 (367)
T ss_pred eEEEechhhEEECCCCCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEEC-CcHHHHHHHHHH-HHcCCCeEEEEeCC
Confidence 9999999999999999999999999999999999998888889999999996 599999999999 678997 8888889
Q ss_pred cchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCc-cHHHHHHHhhccCceEE
Q psy1959 197 EDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE-DKTDLIRQKGAWAALTF 260 (296)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~-~~~~~~~~lg~~~g~~~ 260 (296)
+++.+.++++|++.+++.+. .++.+.+++..+++++|++||++++. ....+++++ +.+|++.
T Consensus 222 ~~~~~~~~~~g~~~v~~~~~-~~~~~~l~~~~~~~~~d~vld~vg~~~~~~~~~~~l-~~~G~~v 284 (367)
T cd08263 222 DEKLAKAKELGATHTVNAAK-EDAVAAIREITGGRGVDVVVEALGKPETFKLALDVV-RDGGRAV 284 (367)
T ss_pred HHHHHHHHHhCCceEecCCc-ccHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHH-hcCCEEE
Confidence 99999999999988888876 67777888887777899999999996 899999999 7777664
No 63
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=99.97 E-value=7.6e-29 Score=224.67 Aligned_cols=216 Identities=29% Similarity=0.422 Sum_probs=193.2
Q ss_pred CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCE
Q psy1959 25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDK 104 (296)
Q Consensus 25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~ 104 (296)
.|.|.+.++ +|+||+.++++|+.|.....|.+.....+|.++|+|++|+|+++ |++++.+++||+
T Consensus 19 ~~~~~~~~~-----~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~----------G~~v~~~~~Gd~ 83 (323)
T cd05282 19 LPIPPPGPG-----EVLVRMLAAPINPSDLITISGAYGSRPPLPAVPGNEGVGVVVEV----------GSGVSGLLVGQR 83 (323)
T ss_pred CCCCCCCCC-----eEEEEEEeccCCHHHHHHhcCcCCCCCCCCCcCCcceEEEEEEe----------CCCCCCCCCCCE
Confidence 456667788 99999999999999999988876544566889999999999999 999999999999
Q ss_pred EEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHH
Q psy1959 105 VLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATK 184 (296)
Q Consensus 105 V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~ 184 (296)
|++... .|+|++|+.++...++++|++++..+++.++..+.+||.++.....+.+|++++|+|++|++|++++++| +
T Consensus 84 V~~~~~--~g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a-~ 160 (323)
T cd05282 84 VLPLGG--EGTWQEYVVAPADDLIPVPDSISDEQAAMLYINPLTAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLA-K 160 (323)
T ss_pred EEEeCC--CCcceeEEecCHHHeEECCCCCCHHHHHHHhccHHHHHHHHHHhccCCCCCEEEEcccccHHHHHHHHHH-H
Confidence 999872 3899999999999999999999999999999999999999988888999999999999999999999999 6
Q ss_pred hCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEE
Q psy1959 185 IYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTF 260 (296)
Q Consensus 185 ~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~ 260 (296)
.+|++++++.+++++.+.++++|++.++++.+ .++.+.+.+.++++++|+++||+|+.....+++++ +.+|++.
T Consensus 161 ~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~d~vl~~~g~~~~~~~~~~l-~~~g~~v 234 (323)
T cd05282 161 LLGFKTINVVRRDEQVEELKALGADEVIDSSP-EDLAQRVKEATGGAGARLALDAVGGESATRLARSL-RPGGTLV 234 (323)
T ss_pred HCCCeEEEEecChHHHHHHHhcCCCEEecccc-hhHHHHHHHHhcCCCceEEEECCCCHHHHHHHHhh-CCCCEEE
Confidence 78999999999999999999999988888876 56777888888888999999999998788899999 7777664
No 64
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=99.97 E-value=8.7e-29 Score=226.35 Aligned_cols=225 Identities=25% Similarity=0.395 Sum_probs=192.8
Q ss_pred cceEEecCCCCC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCC
Q psy1959 13 SDLLLYNGSGDA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSS 88 (296)
Q Consensus 13 ~~~~~~~~~~~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~ 88 (296)
|++++++.++.. .|.|.+.++ ||+|||.++++|+.|+....|.++.. .+|.++|+|++|+|+++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~-----~v~v~v~~~~l~~~d~~~~~~~~~~~-~~~~~~g~e~~G~V~~~------ 68 (337)
T cd08261 1 MKALVCEKPGRLEVVDIPEPVPGAG-----EVLVRVKRVGICGSDLHIYHGRNPFA-SYPRILGHELSGEVVEV------ 68 (337)
T ss_pred CeEEEEeCCCceEEEECCCCCCCCC-----eEEEEEEEEeEcccChHHHcCCCCcC-CCCcccccccEEEEEEe------
Confidence 466666665544 577778888 99999999999999999998876543 45788999999999999
Q ss_pred CCCCCCCCCCCCCCCEEEEecC-------------------------CCCCcccceEeeeCCceEECCCCCCHHHHhhhc
Q psy1959 89 STEEDDEEDVLQVGDKVLALNK-------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLA 143 (296)
Q Consensus 89 ~~~~g~~v~~~~~Gd~V~~~~~-------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~ 143 (296)
|+++..+++||+|++... ...|+|++|+.++++ ++++|+++++++++.+
T Consensus 69 ----G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~-~~~~p~~~~~~~aa~~- 142 (337)
T cd08261 69 ----GEGVAGLKVGDRVVVDPYISCGECYACRKGRPNCCENLQVLGVHRDGGFAEYIVVPAD-ALLVPEGLSLDQAALV- 142 (337)
T ss_pred ----CCCCCCCCCCCEEEECCCCCCCCChhhhCcCcccCCCCCeeeecCCCcceeEEEechh-eEECCCCCCHHHhhhh-
Confidence 999999999999997310 024899999999999 9999999999999866
Q ss_pred cHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHH
Q psy1959 144 DSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNK 223 (296)
Q Consensus 144 ~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 223 (296)
..++++++++ ...++.+|++|+|+| +|.+|++++|+| +.+|++|+++.+++++.++++++|++.++++++ .++.+.
T Consensus 143 ~~~~~a~~~~-~~~~l~~g~~vLI~g-~g~vG~~a~~lA-~~~g~~v~~~~~s~~~~~~~~~~g~~~v~~~~~-~~~~~~ 218 (337)
T cd08261 143 EPLAIGAHAV-RRAGVTAGDTVLVVG-AGPIGLGVIQVA-KARGARVIVVDIDDERLEFARELGADDTINVGD-EDVAAR 218 (337)
T ss_pred chHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHH-HHcCCeEEEECCCHHHHHHHHHhCCCEEecCcc-cCHHHH
Confidence 6888999888 788999999999997 489999999999 668999999999999999999999988888876 667788
Q ss_pred HHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE
Q psy1959 224 VLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF 260 (296)
Q Consensus 224 i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~ 260 (296)
+.+.++++++|+++|++|+ ..+..+++++ +.+|++.
T Consensus 219 l~~~~~~~~vd~vld~~g~~~~~~~~~~~l-~~~G~~i 255 (337)
T cd08261 219 LRELTDGEGADVVIDATGNPASMEEAVELV-AHGGRVV 255 (337)
T ss_pred HHHHhCCCCCCEEEECCCCHHHHHHHHHHH-hcCCEEE
Confidence 8888877789999999987 6889999999 7777764
No 65
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=99.97 E-value=5.7e-29 Score=230.15 Aligned_cols=227 Identities=26% Similarity=0.301 Sum_probs=195.8
Q ss_pred cceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCC
Q psy1959 13 SDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKS 87 (296)
Q Consensus 13 ~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~ 87 (296)
|+++++..++.. .|.|.++++ +|+||+.++++|+.|...+.|.++ ..+|.++|+|++|+|+++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~~~-----~v~i~v~~~~i~~~d~~~~~g~~~--~~~~~~~g~e~~G~V~~v----- 68 (363)
T cd08279 1 MRAAVLHEVGKPLEIEEVELDDPGPG-----EVLVRIAAAGLCHSDLHVVTGDLP--APLPAVLGHEGAGVVEEV----- 68 (363)
T ss_pred CeEEEEecCCCCceEEEeeCCCCCCC-----eEEEEEEEeecCcHHHHHhcCCCC--CCCCccccccceEEEEEe-----
Confidence 678888776444 567777888 999999999999999999888765 345789999999999999
Q ss_pred CCCCCCCCCCCCCCCCEEEEecC---------------------------------------------CCCCcccceEee
Q psy1959 88 SSTEEDDEEDVLQVGDKVLALNK---------------------------------------------ELLHGFSDQCVV 122 (296)
Q Consensus 88 ~~~~~g~~v~~~~~Gd~V~~~~~---------------------------------------------~~~g~~~~~~~v 122 (296)
|+++..+++||+|++... ...|+|++|+.+
T Consensus 69 -----G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 143 (363)
T cd08279 69 -----GPGVTGVKPGDHVVLSWIPACGTCRYCSRGQPNLCDLGAGILGGQLPDGTRRFTADGEPVGAMCGLGTFAEYTVV 143 (363)
T ss_pred -----CCCccccCCCCEEEECCCCCCCCChhhcCCCcccCcccccccccccCCCcccccccCccccccccCccceeeEEe
Confidence 999999999999998310 014899999999
Q ss_pred eCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCE-EEEEeCCcchHH
Q psy1959 123 HTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAK-VIGVCNSEDKTD 201 (296)
Q Consensus 123 ~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~-Vi~~~~~~~~~~ 201 (296)
+.+.++++|+++++++++.++.++.+||.++....+++++++|+|+|+ |++|++++++| +..|++ |+++++++++.+
T Consensus 144 ~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g~-g~vG~a~i~la-k~~G~~~Vi~~~~~~~~~~ 221 (363)
T cd08279 144 PEASVVKIDDDIPLDRAALLGCGVTTGVGAVVNTARVRPGDTVAVIGC-GGVGLNAIQGA-RIAGASRIIAVDPVPEKLE 221 (363)
T ss_pred ccccEEECCCCCChHHeehhcchhHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCcEEEEcCCHHHHH
Confidence 999999999999999999999999999999888899999999999975 99999999999 668996 999999999999
Q ss_pred HHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE
Q psy1959 202 LIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF 260 (296)
Q Consensus 202 ~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~ 260 (296)
.++++|++.+++.+. .++.+.+.+.+.++++|+++|++++ ..+..+++++ +.+|++.
T Consensus 222 ~~~~~g~~~vv~~~~-~~~~~~l~~~~~~~~vd~vld~~~~~~~~~~~~~~l-~~~G~~v 279 (363)
T cd08279 222 LARRFGATHTVNASE-DDAVEAVRDLTDGRGADYAFEAVGRAATIRQALAMT-RKGGTAV 279 (363)
T ss_pred HHHHhCCeEEeCCCC-ccHHHHHHHHcCCCCCCEEEEcCCChHHHHHHHHHh-hcCCeEE
Confidence 999999988777765 5677778887767789999999996 6889999999 7777663
No 66
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=99.97 E-value=9.1e-29 Score=224.75 Aligned_cols=243 Identities=21% Similarity=0.285 Sum_probs=192.9
Q ss_pred cceEEecCCCCC-------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccC
Q psy1959 13 SDLLLYNGSGDA-------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADT 85 (296)
Q Consensus 13 ~~~~~~~~~~~~-------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~ 85 (296)
|+++++..+++. .|.|.|.++ ||+||+.++++|++|.....+.......+|.++|||++|+|++.
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~-----ev~i~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~~--- 72 (326)
T cd08289 1 FQALVVEKDEDDVSVSVKNLTLDDLPEG-----DVLIRVAYSSVNYKDGLASIPGGKIVKRYPFIPGIDLAGTVVES--- 72 (326)
T ss_pred CeeEEEeccCCcceeEEEEccCCCCCCC-----eEEEEEEEEecChHHhhhhcCCccccCCCCcCcccceeEEEEEc---
Confidence 566677666552 566777888 99999999999999987765432222346889999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEecC----CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcC---
Q psy1959 86 KSSSTEEDDEEDVLQVGDKVLALNK----ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAK--- 158 (296)
Q Consensus 86 ~~~~~~~g~~v~~~~~Gd~V~~~~~----~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~--- 158 (296)
| +..+++||+|++... ...|+|++|++++.+.++++|+++++++++.++.++.+||.++.....
T Consensus 73 -------~--~~~~~~Gd~V~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~ 143 (326)
T cd08289 73 -------N--DPRFKPGDEVIVTSYDLGVSHHGGYSEYARVPAEWVVPLPKGLTLKEAMILGTAGFTAALSIHRLEENGL 143 (326)
T ss_pred -------C--CCCCCCCCEEEEcccccCCCCCCcceeEEEEcHHHeEECCCCCCHHHHhhhhhHHHHHHHHHHHHHhcCC
Confidence 5 356999999998741 124999999999999999999999999999999999999988854433
Q ss_pred CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959 159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFE 238 (296)
Q Consensus 159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld 238 (296)
..++++|+|+|++|++|++++++| +..|++|+++++++++.+.++++|++.+++.++ . ..+.+.+.. +.++|+++|
T Consensus 144 ~~~~~~vlI~g~~g~vg~~~~~~a-~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~-~-~~~~~~~~~-~~~~d~vld 219 (326)
T cd08289 144 TPEQGPVLVTGATGGVGSLAVSIL-AKLGYEVVASTGKADAADYLKKLGAKEVIPREE-L-QEESIKPLE-KQRWAGAVD 219 (326)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHH-HHCCCeEEEEecCHHHHHHHHHcCCCEEEcchh-H-HHHHHHhhc-cCCcCEEEE
Confidence 345789999999999999999999 678999999999999999999999988877654 2 344555553 568999999
Q ss_pred CCCCccHHHHHHHhhccCceEEee-----------cccceeeeeEEeccc
Q psy1959 239 AVGGEDKTDLIRQKGAWAALTFTN-----------EKSLVNKVLEVSGGK 277 (296)
Q Consensus 239 ~~g~~~~~~~~~~lg~~~g~~~~~-----------~~~~~~k~~~i~g~~ 277 (296)
++|+..+..+++++ +.+|++..- ...++.+++++.+..
T Consensus 220 ~~g~~~~~~~~~~l-~~~G~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (326)
T cd08289 220 PVGGKTLAYLLSTL-QYGGSVAVSGLTGGGEVETTVFPFILRGVNLLGID 268 (326)
T ss_pred CCcHHHHHHHHHHh-hcCCEEEEEeecCCCCCCcchhhhhhccceEEEEE
Confidence 99998899999999 777766332 122336677777753
No 67
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=99.97 E-value=8.5e-29 Score=229.25 Aligned_cols=225 Identities=22% Similarity=0.273 Sum_probs=190.8
Q ss_pred ceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCC
Q psy1959 14 DLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSS 88 (296)
Q Consensus 14 ~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~ 88 (296)
+++++.+.+.. .|.|.+.++ +|+||+.++++|++|++.+.|.+. ..+|.++|||++|+|+++
T Consensus 2 ~a~~~~~~~~~~~~~~~~~p~~~~~-----~vlv~v~~~~i~~~d~~~~~g~~~--~~~~~i~g~e~~G~V~~v------ 68 (365)
T cd05279 2 KAAVLWEKGKPLSIEEIEVAPPKAG-----EVRIKVVATGVCHTDLHVIDGKLP--TPLPVILGHEGAGIVESI------ 68 (365)
T ss_pred ceeEEecCCCCcEEEEeecCCCCCC-----eEEEEEEEeeecchhHHHhcCCCC--CCCCcccccceeEEEEEe------
Confidence 35555543322 577788888 999999999999999999988764 345789999999999999
Q ss_pred CCCCCCCCCCCCCCCEEEEecC--------------------------------------------C--CCCcccceEee
Q psy1959 89 STEEDDEEDVLQVGDKVLALNK--------------------------------------------E--LLHGFSDQCVV 122 (296)
Q Consensus 89 ~~~~g~~v~~~~~Gd~V~~~~~--------------------------------------------~--~~g~~~~~~~v 122 (296)
|+++..+++||+|++... + ..|+|++|+.+
T Consensus 69 ----G~~v~~~~~Gd~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~v 144 (365)
T cd05279 69 ----GPGVTTLKPGDKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDGTSRFTCKGKPIHHFLGTSTFAEYTVV 144 (365)
T ss_pred ----CCCcccCCCCCEEEEcCCCCCCCChhhcCCCcccCCCcccccccccccCCcceeeccCCccccccccccccceEEe
Confidence 999999999999997621 0 12689999999
Q ss_pred eCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCE-EEEEeCCcchHH
Q psy1959 123 HTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAK-VIGVCNSEDKTD 201 (296)
Q Consensus 123 ~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~-Vi~~~~~~~~~~ 201 (296)
+.+.++++|+++++++++.+..++.+||+++...+++++|++|+|+|+ |++|++++++| +..|++ |+++++++++.+
T Consensus 145 ~~~~~~~lP~~~~~~~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g~-g~vG~~a~~~a-~~~G~~~v~~~~~~~~~~~ 222 (365)
T cd05279 145 SEISLAKIDPDAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGL-GGVGLSVIMGC-KAAGASRIIAVDINKDKFE 222 (365)
T ss_pred cCCceEECCCCCCHHHhhHhccchhHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCeEEEEeCCHHHHH
Confidence 999999999999999999999999999999878899999999999975 99999999999 668985 777777999999
Q ss_pred HHHhcCCcEEEEcCCch--hHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhc-cCceEE
Q psy1959 202 LIRQKGAWAALTFTNEK--SLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGA-WAALTF 260 (296)
Q Consensus 202 ~~~~~g~~~~~~~~~~~--~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~-~~g~~~ 260 (296)
.++++|++.+++..+ . ++.+.+.+.++ +++|+++|++|. ..+..+++++ + .+|++.
T Consensus 223 ~~~~~g~~~~v~~~~-~~~~~~~~l~~~~~-~~~d~vid~~g~~~~~~~~~~~l-~~~~G~~v 282 (365)
T cd05279 223 KAKQLGATECINPRD-QDKPIVEVLTEMTD-GGVDYAFEVIGSADTLKQALDAT-RLGGGTSV 282 (365)
T ss_pred HHHHhCCCeeccccc-ccchHHHHHHHHhC-CCCcEEEECCCCHHHHHHHHHHh-ccCCCEEE
Confidence 999999988887765 4 66677777774 689999999997 7889999999 6 777664
No 68
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=99.97 E-value=1.1e-28 Score=223.12 Aligned_cols=244 Identities=28% Similarity=0.413 Sum_probs=199.5
Q ss_pred cceEEecCCCC--C----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCC
Q psy1959 13 SDLLLYNGSGD--A----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTK 86 (296)
Q Consensus 13 ~~~~~~~~~~~--~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~ 86 (296)
|++++.++++. . +|.|.+.++ +|+||+.++++|+.|.....|.+.. ...|.++|+|++|+|+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~-----~v~V~v~~~~l~~~d~~~~~g~~~~-~~~p~~~G~e~~G~V~~v---- 70 (306)
T cd08258 1 MKALVKTGPGPGNVELREVPEPEPGPG-----EVLIKVAAAGICGSDLHIYKGDYDP-VETPVVLGHEFSGTIVEV---- 70 (306)
T ss_pred CeeEEEecCCCCceEEeecCCCCCCCC-----eEEEEEEEEEechhhHHHHcCCCCc-CCCCeeeccceEEEEEEE----
Confidence 45666665432 1 677778888 9999999999999999998887532 345789999999999999
Q ss_pred CCCCCCCCCCCCCCCCCEEEEecC--------------------------CCCCcccceEeeeCCceEECCCCCCHHHHh
Q psy1959 87 SSSTEEDDEEDVLQVGDKVLALNK--------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAA 140 (296)
Q Consensus 87 ~~~~~~g~~v~~~~~Gd~V~~~~~--------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa 140 (296)
|+++..+++||+|++... ...|+|++|++++...++++|+++++++++
T Consensus 71 ------G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa 144 (306)
T cd08258 71 ------GPDVEGWKVGDRVVSETTFSTCGRCPYCRRGDYNLCPHRKGIGTQADGGFAEYVLVPEESLHELPENLSLEAAA 144 (306)
T ss_pred ------CCCcCcCCCCCEEEEccCcCCCCCCcchhCcCcccCCCCceeeecCCCceEEEEEcchHHeEECcCCCCHHHHH
Confidence 999999999999998642 114899999999999999999999999887
Q ss_pred hhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC--CcchHHHHHhcCCcEEEEcCCch
Q psy1959 141 SLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN--SEDKTDLIRQKGAWAALTFTNEK 218 (296)
Q Consensus 141 ~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~--~~~~~~~~~~~g~~~~~~~~~~~ 218 (296)
++.++.+||+++...++++++++|+|.| +|++|++++++| +..|++|+++.. ++++.+.++++|++.+ ++.. .
T Consensus 145 -~~~~~~~a~~~l~~~~~~~~g~~vlI~g-~g~~g~~~~~la-~~~G~~v~~~~~~~~~~~~~~~~~~g~~~~-~~~~-~ 219 (306)
T cd08258 145 -LTEPLAVAVHAVAERSGIRPGDTVVVFG-PGPIGLLAAQVA-KLQGATVVVVGTEKDEVRLDVAKELGADAV-NGGE-E 219 (306)
T ss_pred -hhchHHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHH-HHcCCEEEEECCCCCHHHHHHHHHhCCccc-CCCc-C
Confidence 7889999999998889999999999977 599999999999 678999887643 4457778888998776 6655 6
Q ss_pred hHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEe-----------ecccceeeeeEEecccc
Q psy1959 219 SLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFT-----------NEKSLVNKVLEVSGGKY 278 (296)
Q Consensus 219 ~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~-----------~~~~~~~k~~~i~g~~~ 278 (296)
++.+.+.+...++++|++||++|+ ..+..+++++ +.+|++.. +...+++|+++|.|++.
T Consensus 220 ~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l-~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~ 290 (306)
T cd08258 220 DLAELVNEITDGDGADVVIECSGAVPALEQALELL-RKGGRIVQVGIFGPLAASIDVERIIQKELSVIGSRS 290 (306)
T ss_pred CHHHHHHHHcCCCCCCEEEECCCChHHHHHHHHHh-hcCCEEEEEcccCCCCcccCHHHHhhcCcEEEEEec
Confidence 777888887777789999999986 6888999999 66666632 22346678888888773
No 69
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=99.97 E-value=1.6e-28 Score=224.85 Aligned_cols=226 Identities=26% Similarity=0.351 Sum_probs=191.5
Q ss_pred cceEEecCCCCC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCC
Q psy1959 13 SDLLLYNGSGDA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSS 88 (296)
Q Consensus 13 ~~~~~~~~~~~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~ 88 (296)
|+++++.+++.. .+.|++.++ +|+||+.++++|+.|+....|.+. ....|.++|+|++|+|+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~-----~v~i~v~~~~l~~~d~~~~~g~~~-~~~~~~~~g~~~~G~V~~~------ 68 (343)
T cd08235 1 MKAAVLHGPNDVRLEEVPVPEPGPG-----EVLVKVRACGICGTDVKKIRGGHT-DLKPPRILGHEIAGEIVEV------ 68 (343)
T ss_pred CeEEEEecCCceEEEEccCCCCCCC-----eEEEEEEEeeeccccHHHHcCCCc-cCCCCcccccceEEEEEee------
Confidence 466666665544 566667778 999999999999999999888664 2345779999999999999
Q ss_pred CCCCCCCCCCCCCCCEEEEecC-------------------------CCCCcccceEeeeCCc-----eEECCCCCCHHH
Q psy1959 89 STEEDDEEDVLQVGDKVLALNK-------------------------ELLHGFSDQCVVHTND-----VFKIPEKMTFEH 138 (296)
Q Consensus 89 ~~~~g~~v~~~~~Gd~V~~~~~-------------------------~~~g~~~~~~~v~~~~-----~~~iP~~~~~~~ 138 (296)
|+++..+++||+|+++.. ...|+|++|+.++.+. ++++|+++++.+
T Consensus 69 ----G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~~~~~~lP~~~~~~~ 144 (343)
T cd08235 69 ----GDGVTGFKVGDRVFVAPHVPCGECHYCLRGNENMCPNYKKFGNLYDGGFAEYVRVPAWAVKRGGVLKLPDNVSFEE 144 (343)
T ss_pred ----CCCCCCCCCCCEEEEccCCCCCCChHHHCcCcccCCCcceeccCCCCcceeeEEecccccccccEEECCCCCCHHH
Confidence 999999999999998621 0248999999999998 999999999999
Q ss_pred HhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCE-EEEEeCCcchHHHHHhcCCcEEEEcCCc
Q psy1959 139 AASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAK-VIGVCNSEDKTDLIRQKGAWAALTFTNE 217 (296)
Q Consensus 139 aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~-Vi~~~~~~~~~~~~~~~g~~~~~~~~~~ 217 (296)
++.+ .++.+||+++. ..++++|++|+|+| +|++|++++++| +..|++ |+++++++++.+.++++|.+.++++++
T Consensus 145 aa~~-~~~~~a~~~l~-~~~~~~g~~VlV~g-~g~vg~~~~~la-~~~g~~~v~~~~~s~~~~~~~~~~g~~~~~~~~~- 219 (343)
T cd08235 145 AALV-EPLACCINAQR-KAGIKPGDTVLVIG-AGPIGLLHAMLA-KASGARKVIVSDLNEFRLEFAKKLGADYTIDAAE- 219 (343)
T ss_pred HHhh-hHHHHHHHHHH-hcCCCCCCEEEEEC-CCHHHHHHHHHH-HHcCCcEEEEECCCHHHHHHHHHhCCcEEecCCc-
Confidence 9865 88999999995 45899999999997 599999999999 668998 999998999999998899888888776
Q ss_pred hhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE
Q psy1959 218 KSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF 260 (296)
Q Consensus 218 ~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~ 260 (296)
.++.+.+.+.+.++++|+++|++++ ..+..+++++ +.+|++.
T Consensus 220 ~~~~~~i~~~~~~~~vd~vld~~~~~~~~~~~~~~l-~~~g~~v 262 (343)
T cd08235 220 EDLVEKVRELTDGRGADVVIVATGSPEAQAQALELV-RKGGRIL 262 (343)
T ss_pred cCHHHHHHHHhCCcCCCEEEECCCChHHHHHHHHHh-hcCCEEE
Confidence 6777888888877789999999997 5888999999 7777664
No 70
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.97 E-value=1.8e-28 Score=221.51 Aligned_cols=211 Identities=21% Similarity=0.310 Sum_probs=183.4
Q ss_pred CCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCEE
Q psy1959 26 PTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKV 105 (296)
Q Consensus 26 ~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V 105 (296)
+.|.+.++ ||+||+.++++|+.|+....|..+. ...|.++|||++|+|+++ |. ..+++||+|
T Consensus 21 ~~~~~~~~-----~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~g~e~~G~v~~v----------G~--~~~~~Gd~V 82 (320)
T cd08243 21 PIPEPKPG-----WVLIRVKAFGLNRSEIFTRQGHSPS-VKFPRVLGIEAVGEVEEA----------PG--GTFTPGQRV 82 (320)
T ss_pred CCCCCCCC-----EEEEEEEEEecCHHHHHHhcCCCCC-CCCCccccceeEEEEEEe----------cC--CCCCCCCEE
Confidence 44557778 9999999999999999998886542 345789999999999999 74 469999999
Q ss_pred EEecC----CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHH
Q psy1959 106 LALNK----ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDM 181 (296)
Q Consensus 106 ~~~~~----~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~l 181 (296)
+++.. +..|+|++|+.++...++++|+++++++++.++.++.+||.++.+..++++|++|+|+|++|++|++++++
T Consensus 83 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~g~~g~~~~~~ 162 (320)
T cd08243 83 ATAMGGMGRTFDGSYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVGLAALKL 162 (320)
T ss_pred EEecCCCCCCCCcccceEEEcCHHHcEeCCCCCCHHHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcCCChHHHHHHHH
Confidence 98753 12489999999999999999999999999999999999999998888899999999999999999999999
Q ss_pred HHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEE
Q psy1959 182 ATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTF 260 (296)
Q Consensus 182 a~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~ 260 (296)
| +..|++|++++.++++.+.++++|++.++.. . .++.+.+.+. ++++|+++|++|+..+..+++++ +.+|++.
T Consensus 163 a-~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~-~-~~~~~~i~~~--~~~~d~vl~~~~~~~~~~~~~~l-~~~g~~v 235 (320)
T cd08243 163 A-KALGATVTATTRSPERAALLKELGADEVVID-D-GAIAEQLRAA--PGGFDKVLELVGTATLKDSLRHL-RPGGIVC 235 (320)
T ss_pred H-HHcCCEEEEEeCCHHHHHHHHhcCCcEEEec-C-ccHHHHHHHh--CCCceEEEECCChHHHHHHHHHh-ccCCEEE
Confidence 9 6789999999999999999999998776643 3 4566677776 56899999999998899999999 7777764
No 71
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=99.97 E-value=2.1e-28 Score=224.52 Aligned_cols=228 Identities=27% Similarity=0.385 Sum_probs=193.8
Q ss_pred cceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCC
Q psy1959 13 SDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKS 87 (296)
Q Consensus 13 ~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~ 87 (296)
|+++++.+++.. .|.|.+.++ +|+||+.++++|+.|+....|..+. ..+|.++|+|++|+|+++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~-----~v~v~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~~----- 69 (345)
T cd08260 1 MRAAVYEEFGEPLEIREVPDPEPPPD-----GVVVEVEACGVCRSDWHGWQGHDPD-VTLPHVPGHEFAGVVVEV----- 69 (345)
T ss_pred CeeEEEecCCCCcEEEEccCCCCCCC-----eEEEEEEEeeccHHHHHHhcCCCCC-CCCCeeeccceeEEEEEE-----
Confidence 567777665442 566777778 9999999999999999999887654 356889999999999999
Q ss_pred CCCCCCCCCCCCCCCCEEEEec-------------------------CCCCCcccceEeeeCC--ceEECCCCCCHHHHh
Q psy1959 88 SSTEEDDEEDVLQVGDKVLALN-------------------------KELLHGFSDQCVVHTN--DVFKIPEKMTFEHAA 140 (296)
Q Consensus 88 ~~~~~g~~v~~~~~Gd~V~~~~-------------------------~~~~g~~~~~~~v~~~--~~~~iP~~~~~~~aa 140 (296)
|+++..+++||+|++.. ....|+|++|++++.. .++++|+++++++++
T Consensus 70 -----G~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~iP~~~~~~~aa 144 (345)
T cd08260 70 -----GEDVSRWRVGDRVTVPFVLGCGTCPYCRAGDSNVCEHQVQPGFTHPGSFAEYVAVPRADVNLVRLPDDVDFVTAA 144 (345)
T ss_pred -----CCCCccCCCCCEEEECCCCCCCCCccccCcCcccCCCCcccccCCCCcceeEEEcccccCceEECCCCCCHHHhh
Confidence 99998999999998710 0115899999999985 899999999999999
Q ss_pred hhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhH
Q psy1959 141 SLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSL 220 (296)
Q Consensus 141 ~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 220 (296)
.++.++.+||+++.+.+++.++++++|+| .|++|++++++| +..|++|+++++++++.+.++++|++.+++.++..++
T Consensus 145 ~l~~~~~ta~~~l~~~~~~~~~~~vlV~g-~g~vg~~~~~~a-~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~ 222 (345)
T cd08260 145 GLGCRFATAFRALVHQARVKPGEWVAVHG-CGGVGLSAVMIA-SALGARVIAVDIDDDKLELARELGAVATVNASEVEDV 222 (345)
T ss_pred hhccchHHHHHHHHHccCCCCCCEEEEEC-CCHHHHHHHHHH-HHcCCeEEEEeCCHHHHHHHHHhCCCEEEccccchhH
Confidence 99999999999987888999999999999 599999999999 6789999999999999999999999888877542456
Q ss_pred HHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE
Q psy1959 221 VNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF 260 (296)
Q Consensus 221 ~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~ 260 (296)
.+.+.....+ ++|++||++|+ ..+..+++++ +.+|++.
T Consensus 223 ~~~~~~~~~~-~~d~vi~~~g~~~~~~~~~~~l-~~~g~~i 261 (345)
T cd08260 223 AAAVRDLTGG-GAHVSVDALGIPETCRNSVASL-RKRGRHV 261 (345)
T ss_pred HHHHHHHhCC-CCCEEEEcCCCHHHHHHHHHHh-hcCCEEE
Confidence 6777777766 89999999996 7888999999 7777664
No 72
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=99.97 E-value=9.2e-29 Score=226.69 Aligned_cols=226 Identities=23% Similarity=0.324 Sum_probs=193.6
Q ss_pred cceEEecCC--CCC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCC
Q psy1959 13 SDLLLYNGS--GDA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTK 86 (296)
Q Consensus 13 ~~~~~~~~~--~~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~ 86 (296)
|++++++.+ ++. .|.|.|+++ ||+||+.++++|++|+....+.+ ...+|.++|+|++|+|+.+
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~p~~~~~-----ev~i~v~~~~i~~~d~~~~~~~~--~~~~~~~~g~e~~G~v~~v---- 69 (339)
T cd08249 1 QKAAVLTGPGGGLLVVVDVPVPKPGPD-----EVLVKVKAVALNPVDWKHQDYGF--IPSYPAILGCDFAGTVVEV---- 69 (339)
T ss_pred CceEEeccCCCCcccccCCCCCCCCCC-----EEEEEEEEEEcCchheeeeeccc--ccCCCceeeeeeeEEEEEe----
Confidence 678888877 332 577778888 99999999999999998876654 1235778999999999999
Q ss_pred CCCCCCCCCCCCCCCCCEEEEecC------CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCC-
Q psy1959 87 SSSTEEDDEEDVLQVGDKVLALNK------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKL- 159 (296)
Q Consensus 87 ~~~~~~g~~v~~~~~Gd~V~~~~~------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~- 159 (296)
|+++..+++||+|+++.. ..+|+|++|++++.+.++++|+++++++++.++.++.+||+++.+..++
T Consensus 70 ------G~~v~~~~~Gd~V~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~ 143 (339)
T cd08249 70 ------GSGVTRFKVGDRVAGFVHGGNPNDPRNGAFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALFQKLGLP 143 (339)
T ss_pred ------CCCcCcCCCCCEEEEEeccccCCCCCCCcccceEEechhheEECCCCCCHHHceecchHHHHHHHHHhccccCC
Confidence 999989999999999853 1248999999999999999999999999999999999999998766554
Q ss_pred ---------CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCC
Q psy1959 160 ---------KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGG 230 (296)
Q Consensus 160 ---------~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~ 230 (296)
+++++++|+|++|++|++++++| +..|++|+.+. ++++.+.++++|++.+++..+ .++.+.+++.++
T Consensus 144 ~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~a-~~~G~~v~~~~-~~~~~~~~~~~g~~~v~~~~~-~~~~~~l~~~~~- 219 (339)
T cd08249 144 LPPPKPSPASKGKPVLIWGGSSSVGTLAIQLA-KLAGYKVITTA-SPKNFDLVKSLGADAVFDYHD-PDVVEDIRAATG- 219 (339)
T ss_pred CCCCCCCCCCCCCEEEEEcChhHHHHHHHHHH-HHcCCeEEEEE-CcccHHHHHhcCCCEEEECCC-chHHHHHHHhcC-
Confidence 78999999999999999999999 67899999888 568999999999988888876 677777877765
Q ss_pred CcccEEEECCCC-ccHHHHHHHhhcc--CceEE
Q psy1959 231 KYANVVFEAVGG-EDKTDLIRQKGAW--AALTF 260 (296)
Q Consensus 231 ~g~d~vld~~g~-~~~~~~~~~lg~~--~g~~~ 260 (296)
+++|+++|++|+ ..+..+++++ +. +|.+.
T Consensus 220 ~~~d~vl~~~g~~~~~~~~~~~l-~~~~~g~~v 251 (339)
T cd08249 220 GKLRYALDCISTPESAQLCAEAL-GRSGGGKLV 251 (339)
T ss_pred CCeeEEEEeeccchHHHHHHHHH-hccCCCEEE
Confidence 689999999998 8999999999 66 77663
No 73
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.97 E-value=2.8e-28 Score=221.79 Aligned_cols=247 Identities=25% Similarity=0.314 Sum_probs=204.9
Q ss_pred cceEEecCCCCC-------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccC
Q psy1959 13 SDLLLYNGSGDA-------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADT 85 (296)
Q Consensus 13 ~~~~~~~~~~~~-------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~ 85 (296)
|++++++..+.. .+.|.+.++ |++|++.++++|++|+....|.++.....|.++|||++|+|+++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~--- 72 (336)
T cd08276 1 MKAWRLSGGGGLDNLKLVEEPVPEPGPG-----EVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPLSDGAGEVVAV--- 72 (336)
T ss_pred CeEEEEeccCCCcceEEEeccCCCCCCC-----eEEEEEEEEecCHHHHHHhcCCCCCCCCCCcccccceeEEEEEe---
Confidence 566666643211 344556777 99999999999999999998876655557889999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEecC-------------------CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHH
Q psy1959 86 KSSSTEEDDEEDVLQVGDKVLALNK-------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSY 146 (296)
Q Consensus 86 ~~~~~~~g~~v~~~~~Gd~V~~~~~-------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~ 146 (296)
|+++.++++||+|++... +..|+|++|+.++.+.++++|+++++.+++.++.++
T Consensus 73 -------G~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~ 145 (336)
T cd08276 73 -------GEGVTRFKVGDRVVPTFFPNWLDGPPTAEDEASALGGPIDGVLAEYVVLPEEGLVRAPDHLSFEEAATLPCAG 145 (336)
T ss_pred -------CCCCcCCCCCCEEEEecccccccccccccccccccccccCceeeeEEEecHHHeEECCCCCCHHHhhhhhHHH
Confidence 999989999999998651 114889999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHH
Q psy1959 147 STAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLE 226 (296)
Q Consensus 147 ~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 226 (296)
.+||+++...+.+++|++++|+| +|++|++++++| +..|++|++++.++++.+.++++|.+.+++.....++.+.+.+
T Consensus 146 ~~a~~~l~~~~~~~~g~~vli~g-~g~~g~~~~~~a-~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 223 (336)
T cd08276 146 LTAWNALFGLGPLKPGDTVLVQG-TGGVSLFALQFA-KAAGARVIATSSSDEKLERAKALGADHVINYRTTPDWGEEVLK 223 (336)
T ss_pred HHHHHHHHhhcCCCCCCEEEEEC-CcHHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHcCCCEEEcCCcccCHHHHHHH
Confidence 99999998888999999999996 599999999999 6789999999999999999999998887776542456777888
Q ss_pred HhCCCcccEEEECCCCccHHHHHHHhhccCceEEee-----------cccceeeeeEEeccc
Q psy1959 227 VSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTFTN-----------EKSLVNKVLEVSGGK 277 (296)
Q Consensus 227 ~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~~~-----------~~~~~~k~~~i~g~~ 277 (296)
.++++++|+++|+++......+++++ +.+|++... ...++.+++.+.+..
T Consensus 224 ~~~~~~~d~~i~~~~~~~~~~~~~~l-~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (336)
T cd08276 224 LTGGRGVDHVVEVGGPGTLAQSIKAV-APGGVISLIGFLSGFEAPVLLLPLLTKGATLRGIA 284 (336)
T ss_pred HcCCCCCcEEEECCChHHHHHHHHhh-cCCCEEEEEccCCCCccCcCHHHHhhcceEEEEEe
Confidence 88778999999999988899999999 777776431 223356677777654
No 74
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=99.97 E-value=1.8e-28 Score=224.58 Aligned_cols=225 Identities=29% Similarity=0.367 Sum_probs=190.1
Q ss_pred cceEEecCCCCC----CCCCCCC-CCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCC
Q psy1959 13 SDLLLYNGSGDA----KPTLPLV-PGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKS 87 (296)
Q Consensus 13 ~~~~~~~~~~~~----~~~p~~~-~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~ 87 (296)
|+++++..++.. .|.|.|. ++ ||+||+.++++|+.|+....|.+. ..+|.++|+|++|+|+++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~p~~~~~~-----~v~i~v~~~~i~~~d~~~~~g~~~--~~~~~~~g~e~~G~V~~v----- 68 (344)
T cd08284 1 MKAVVFKGPGDVRVEEVPIPQIQDPT-----DAIVKVTAAAICGSDLHIYRGHIP--STPGFVLGHEFVGEVVEV----- 68 (344)
T ss_pred CeeEEEecCCCceEEeccCCCCCCCC-----eEEEEEEEeeccccchhhhcCCCC--CCCCcccccceEEEEEee-----
Confidence 466677665544 5677764 78 999999999999999999888665 334788999999999999
Q ss_pred CCCCCCCCCCCCCCCCEEEEecC-----------------------------CCCCcccceEeeeCC--ceEECCCCCCH
Q psy1959 88 SSTEEDDEEDVLQVGDKVLALNK-----------------------------ELLHGFSDQCVVHTN--DVFKIPEKMTF 136 (296)
Q Consensus 88 ~~~~~g~~v~~~~~Gd~V~~~~~-----------------------------~~~g~~~~~~~v~~~--~~~~iP~~~~~ 136 (296)
|+++..+++||+|++... ...|+|++|+.++.+ .++++|+++++
T Consensus 69 -----G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~p~~l~~ 143 (344)
T cd08284 69 -----GPEVRTLKVGDRVVSPFTIACGECFYCRRGQSGRCAKGGLFGYAGSPNLDGAQAEYVRVPFADGTLLKLPDGLSD 143 (344)
T ss_pred -----CCCccccCCCCEEEEcccCCCCCChHHhCcCcccCCCCccccccccCCCCCceeEEEEcccccCceEECCCCCCH
Confidence 999999999999998531 014889999999975 99999999999
Q ss_pred HHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCCcEEEEcC
Q psy1959 137 EHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALTFT 215 (296)
Q Consensus 137 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~~~~~~~~ 215 (296)
++++.++.++++||+++. ..++.++++|+|+| +|++|++++++| +.+|+ +|+++++++++.+.++++|+. .++.+
T Consensus 144 ~~a~~l~~~~~ta~~~~~-~~~~~~~~~vlI~g-~g~vg~~~~~~a-~~~g~~~v~~~~~~~~~~~~~~~~g~~-~~~~~ 219 (344)
T cd08284 144 EAALLLGDILPTGYFGAK-RAQVRPGDTVAVIG-CGPVGLCAVLSA-QVLGAARVFAVDPVPERLERAAALGAE-PINFE 219 (344)
T ss_pred HHhhhhcCchHHHHhhhH-hcCCccCCEEEEEC-CcHHHHHHHHHH-HHcCCceEEEEcCCHHHHHHHHHhCCe-EEecC
Confidence 999999999999999995 58899999999997 599999999999 67897 899998888899999999975 45555
Q ss_pred CchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE
Q psy1959 216 NEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF 260 (296)
Q Consensus 216 ~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~ 260 (296)
. .++.+.+.+.++++++|++||++|+ +.+..+++++ +.+|++.
T Consensus 220 ~-~~~~~~l~~~~~~~~~dvvid~~~~~~~~~~~~~~l-~~~g~~v 263 (344)
T cd08284 220 D-AEPVERVREATEGRGADVVLEAVGGAAALDLAFDLV-RPGGVIS 263 (344)
T ss_pred C-cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhc-ccCCEEE
Confidence 5 5677788888877899999999997 6889999999 7777664
No 75
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=99.97 E-value=1.8e-28 Score=224.08 Aligned_cols=226 Identities=24% Similarity=0.283 Sum_probs=188.8
Q ss_pred cceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCC
Q psy1959 13 SDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKS 87 (296)
Q Consensus 13 ~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~ 87 (296)
||+++++++++. .|.|.|.++ ||+|||.++++|++|+....|..+. ..|.++|||++|+|+++
T Consensus 1 mka~~~~~~~~~~~~~~~~~p~~~~~-----evlv~v~~~~i~~~d~~~~~g~~~~--~~~~~~g~e~~G~V~~~----- 68 (338)
T PRK09422 1 MKAAVVNKDHTGDVVVEKTLRPLKHG-----EALVKMEYCGVCHTDLHVANGDFGD--KTGRILGHEGIGIVKEV----- 68 (338)
T ss_pred CeEEEecCCCCCceEEEecCCCCCCC-----eEEEEEEEEeechhHHHHHcCCCCC--CCCccCCcccceEEEEE-----
Confidence 677777765543 577778888 9999999999999999998886543 23678999999999999
Q ss_pred CCCCCCCCCCCCCCCCEEEEe-----------c---------------CCCCCcccceEeeeCCceEECCCCCCHHHHhh
Q psy1959 88 SSTEEDDEEDVLQVGDKVLAL-----------N---------------KELLHGFSDQCVVHTNDVFKIPEKMTFEHAAS 141 (296)
Q Consensus 88 ~~~~~g~~v~~~~~Gd~V~~~-----------~---------------~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~ 141 (296)
|+++..|++||+|++. . ....|+|++|+.++.+.++++|++++++++++
T Consensus 69 -----G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~ 143 (338)
T PRK09422 69 -----GPGVTSLKVGDRVSIAWFFEGCGHCEYCTTGRETLCRSVKNAGYTVDGGMAEQCIVTADYAVKVPEGLDPAQASS 143 (338)
T ss_pred -----CCCCccCCCCCEEEEccCCCCCCCChhhcCCCcccCCCccccCccccCcceeEEEEchHHeEeCCCCCCHHHeeh
Confidence 9999999999999862 1 01148999999999999999999999999999
Q ss_pred hccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHH
Q psy1959 142 LADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLV 221 (296)
Q Consensus 142 l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 221 (296)
++.++.+||+++ ..+++++|++|+|+| .|++|++++++|+...|++|+++++++++.+.++++|++.+++++...++.
T Consensus 144 l~~~~~ta~~~~-~~~~~~~g~~vlV~g-~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~ 221 (338)
T PRK09422 144 ITCAGVTTYKAI-KVSGIKPGQWIAIYG-AGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEVGADLTINSKRVEDVA 221 (338)
T ss_pred hhcchhHHHHHH-HhcCCCCCCEEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHcCCcEEecccccccHH
Confidence 999999999998 788999999999999 599999999999433599999999999999999999998887774324556
Q ss_pred HHHHHHhCCCccc-EEEECCCCccHHHHHHHhhccCceEE
Q psy1959 222 NKVLEVSGGKYAN-VVFEAVGGEDKTDLIRQKGAWAALTF 260 (296)
Q Consensus 222 ~~i~~~~~~~g~d-~vld~~g~~~~~~~~~~lg~~~g~~~ 260 (296)
+.+++..+ ++| +++++.+++.+..+++++ +.+|++.
T Consensus 222 ~~v~~~~~--~~d~vi~~~~~~~~~~~~~~~l-~~~G~~v 258 (338)
T PRK09422 222 KIIQEKTG--GAHAAVVTAVAKAAFNQAVDAV-RAGGRVV 258 (338)
T ss_pred HHHHHhcC--CCcEEEEeCCCHHHHHHHHHhc-cCCCEEE
Confidence 66777664 688 455555557899999999 7777764
No 76
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=99.97 E-value=3.8e-28 Score=218.98 Aligned_cols=218 Identities=27% Similarity=0.387 Sum_probs=191.9
Q ss_pred CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCE
Q psy1959 25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDK 104 (296)
Q Consensus 25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~ 104 (296)
.|.|.+.++ +|+|++.++++|++|+....|.+......|.++|||++|+|+++ |+++..|++||+
T Consensus 20 ~~~~~l~~~-----~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~----------g~~~~~~~~Gd~ 84 (325)
T cd08253 20 LPVPTPGPG-----EVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVPGSDGAGVVEAV----------GEGVDGLKVGDR 84 (325)
T ss_pred cCCCCCCCC-----EEEEEEEEEecChhHhhhccCCCCCCCCCCeecccceEEEEEee----------CCCCCCCCCCCE
Confidence 456666777 99999999999999999988876544567889999999999999 999999999999
Q ss_pred EEEecCC---CCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHH
Q psy1959 105 VLALNKE---LLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDM 181 (296)
Q Consensus 105 V~~~~~~---~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~l 181 (296)
|++.... ..|++++|+.++.+.++++|+++++.++++++.++.+||+++....++.+|++++|+|+++++|++++++
T Consensus 85 v~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~~~~g~~~~~~ 164 (325)
T cd08253 85 VWLTNLGWGRRQGTAAEYVVVPADQLVPLPDGVSFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQL 164 (325)
T ss_pred EEEeccccCCCCcceeeEEEecHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEEEcCCchHHHHHHHH
Confidence 9998621 1489999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred HHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEE
Q psy1959 182 ATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTF 260 (296)
Q Consensus 182 a~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~ 260 (296)
+ +..|++|+++++++++.+.++++|++..++... .++.+.+.+.+.++++|+++++.|+......++++ +.+|.+.
T Consensus 165 a-~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l-~~~g~~v 240 (325)
T cd08253 165 A-RWAGARVIATASSAEGAELVRQAGADAVFNYRA-EDLADRILAATAGQGVDVIIEVLANVNLAKDLDVL-APGGRIV 240 (325)
T ss_pred H-HHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCC-cCHHHHHHHHcCCCceEEEEECCchHHHHHHHHhh-CCCCEEE
Confidence 9 668999999999999999999999888887765 56777777777677899999999998888899999 7667664
No 77
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=99.97 E-value=2.8e-28 Score=223.43 Aligned_cols=224 Identities=32% Similarity=0.407 Sum_probs=190.8
Q ss_pred cceEEecCCCCC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCC
Q psy1959 13 SDLLLYNGSGDA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSS 88 (296)
Q Consensus 13 ~~~~~~~~~~~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~ 88 (296)
|+++++++.++. .|.|++.++ ||+||+.++++|+.|+..+.|.+. ...|.++|+|++|+|+++
T Consensus 1 ~~a~~~~~~~~l~~~~~~~~~l~~~-----~v~v~v~~~~~n~~d~~~~~~~~~--~~~~~~~g~~~~G~V~~~------ 67 (343)
T cd08236 1 MKALVLTGPGDLRYEDIPKPEPGPG-----EVLVKVKACGICGSDIPRYLGTGA--YHPPLVLGHEFSGTVEEV------ 67 (343)
T ss_pred CeeEEEecCCceeEEecCCCCCCCC-----eEEEEEEEEEECccchHhhcCCCC--CCCCcccCcceEEEEEEE------
Confidence 566677665544 567778888 999999999999999998887652 345789999999999999
Q ss_pred CCCCCCCCCCCCCCCEEEEecC-------------------------CCCCcccceEeeeCCceEECCCCCCHHHHhhhc
Q psy1959 89 STEEDDEEDVLQVGDKVLALNK-------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLA 143 (296)
Q Consensus 89 ~~~~g~~v~~~~~Gd~V~~~~~-------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~ 143 (296)
|+++..|++||+|+++.. ...|+|++|+.++++.++++|+++++++++.+
T Consensus 68 ----g~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lP~~~~~~~aa~~- 142 (343)
T cd08236 68 ----GSGVDDLAVGDRVAVNPLLPCGKCEYCKKGEYSLCSNYDYIGSRRDGAFAEYVSVPARNLIKIPDHVDYEEAAMI- 142 (343)
T ss_pred ----CCCCCcCCCCCEEEEcCCCCCCCChhHHCcChhhCCCcceEecccCCcccceEEechHHeEECcCCCCHHHHHhc-
Confidence 999999999999998621 12489999999999999999999999999877
Q ss_pred cHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCE-EEEEeCCcchHHHHHhcCCcEEEEcCCchhHHH
Q psy1959 144 DSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAK-VIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVN 222 (296)
Q Consensus 144 ~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~-Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 222 (296)
.++.+||.++. ...++++++|+|+|+ |.+|++++|+| +.+|++ |+++++++++.++++++|++.++++++ .. .+
T Consensus 143 ~~~~ta~~~l~-~~~~~~~~~vlI~g~-g~~g~~~~~lA-~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~-~~-~~ 217 (343)
T cd08236 143 EPAAVALHAVR-LAGITLGDTVVVIGA-GTIGLLAIQWL-KILGAKRVIAVDIDDEKLAVARELGADDTINPKE-ED-VE 217 (343)
T ss_pred chHHHHHHHHH-hcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCcc-cc-HH
Confidence 68899999995 788999999999974 99999999999 678997 999999999999999999988888766 45 66
Q ss_pred HHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE
Q psy1959 223 KVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF 260 (296)
Q Consensus 223 ~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~ 260 (296)
.+....+++++|+++||+|+ ..+..+++++ +.+|++.
T Consensus 218 ~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l-~~~G~~v 255 (343)
T cd08236 218 KVRELTEGRGADLVIEAAGSPATIEQALALA-RPGGKVV 255 (343)
T ss_pred HHHHHhCCCCCCEEEECCCCHHHHHHHHHHh-hcCCEEE
Confidence 77777777789999999987 6889999999 7777764
No 78
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=99.97 E-value=3.7e-28 Score=218.62 Aligned_cols=245 Identities=27% Similarity=0.401 Sum_probs=204.4
Q ss_pred cceEEecCCCCC-------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccC
Q psy1959 13 SDLLLYNGSGDA-------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADT 85 (296)
Q Consensus 13 ~~~~~~~~~~~~-------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~ 85 (296)
||++++.+++.. .+.|.+.++ +|+||+.++++|+.|+....|.+.....+|.++|||++|+|+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~v--- 72 (323)
T cd05276 1 MKAIVIKEPGGPEVLELGEVPKPAPGPG-----EVLIRVAAAGVNRADLLQRQGLYPPPPGASDILGLEVAGVVVAV--- 72 (323)
T ss_pred CeEEEEecCCCcccceEEecCCCCCCCC-----EEEEEEEEeecCHHHHHHhCCCCCCCCCCCCcccceeEEEEEee---
Confidence 566666654332 334456677 99999999999999999988876555567889999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEE
Q psy1959 86 KSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTV 165 (296)
Q Consensus 86 ~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~v 165 (296)
|+++..+++||+|+++.. +|+|++|+.++.+.++++|+++++.+++.++.++.++|.++.+...+.+++++
T Consensus 73 -------g~~~~~~~~Gd~V~~~~~--~g~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~v 143 (323)
T cd05276 73 -------GPGVTGWKVGDRVCALLA--GGGYAEYVVVPAGQLLPVPEGLSLVEAAALPEVFFTAWQNLFQLGGLKAGETV 143 (323)
T ss_pred -------CCCCCCCCCCCEEEEecC--CCceeEEEEcCHHHhccCCCCCCHHHHhhchhHHHHHHHHHHHhcCCCCCCEE
Confidence 998888999999999854 58999999999999999999999999999999999999998888899999999
Q ss_pred EEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccH
Q psy1959 166 LVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDK 245 (296)
Q Consensus 166 lI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~ 245 (296)
+|+|++|++|+++++++ +..|++|+++++++++.+.++++|++..++... .++.+.+.+...++++|+++++.|+...
T Consensus 144 lv~g~~~~ig~~~~~~~-~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~d~vi~~~g~~~~ 221 (323)
T cd05276 144 LIHGGASGVGTAAIQLA-KALGARVIATAGSEEKLEACRALGADVAINYRT-EDFAEEVKEATGGRGVDVILDMVGGDYL 221 (323)
T ss_pred EEEcCcChHHHHHHHHH-HHcCCEEEEEcCCHHHHHHHHHcCCCEEEeCCc-hhHHHHHHHHhCCCCeEEEEECCchHHH
Confidence 99999999999999999 678999999999999999998899877777765 5677777777766789999999999778
Q ss_pred HHHHHHhhccCceEEee-----------cccceeeeeEEeccc
Q psy1959 246 TDLIRQKGAWAALTFTN-----------EKSLVNKVLEVSGGK 277 (296)
Q Consensus 246 ~~~~~~lg~~~g~~~~~-----------~~~~~~k~~~i~g~~ 277 (296)
..+++++ ..+|.+... ...++.+++++.++.
T Consensus 222 ~~~~~~~-~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (323)
T cd05276 222 ARNLRAL-APDGRLVLIGLLGGAKAELDLAPLLRKRLTLTGST 263 (323)
T ss_pred HHHHHhh-ccCCEEEEEecCCCCCCCCchHHHHHhCCeEEEee
Confidence 8899999 666666321 112235667777665
No 79
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=99.97 E-value=3.4e-28 Score=226.03 Aligned_cols=223 Identities=26% Similarity=0.321 Sum_probs=186.9
Q ss_pred cceEEecCCCCC----CCCCCC-CCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCC
Q psy1959 13 SDLLLYNGSGDA----KPTLPL-VPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKS 87 (296)
Q Consensus 13 ~~~~~~~~~~~~----~~~p~~-~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~ 87 (296)
|+++++.+++.. .|.|.+ .++ ||+||+.++++|++|+..+.|.+. ..+|.++|||++|+|+++
T Consensus 1 m~~~~~~~~~~~~~~~~~~p~~~~~~-----evlv~v~a~~i~~~D~~~~~g~~~--~~~p~~~g~e~~G~V~~v----- 68 (375)
T cd08282 1 MKAVVYGGPGNVAVEDVPDPKIEHPT-----DAIVRITTTAICGSDLHMYRGRTG--AEPGLVLGHEAMGEVEEV----- 68 (375)
T ss_pred CceEEEecCCceeEEeCCCCCCCCCC-----eEEEEEEEEeeCHHHHHHHcCCCC--CCCCceeccccEEEEEEe-----
Confidence 466777766544 566664 578 999999999999999999988765 346889999999999999
Q ss_pred CCCCCCCCCCCCCCCCEEEEecC-----------------------------------CCCCcccceEeeeCC--ceEEC
Q psy1959 88 SSTEEDDEEDVLQVGDKVLALNK-----------------------------------ELLHGFSDQCVVHTN--DVFKI 130 (296)
Q Consensus 88 ~~~~~g~~v~~~~~Gd~V~~~~~-----------------------------------~~~g~~~~~~~v~~~--~~~~i 130 (296)
|+++..+++||+|++... ...|+|++|++++.. .++++
T Consensus 69 -----G~~v~~~~~Gd~V~~~~~~~~g~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~~~l 143 (375)
T cd08282 69 -----GSAVESLKVGDRVVVPFNVACGRCRNCKRGLTGVCLTVNPGRAGGAYGYVDMGPYGGGQAEYLRVPYADFNLLKL 143 (375)
T ss_pred -----CCCCCcCCCCCEEEEeCCCCCCCCHHHHCcCcccCCCCCcccccccccccccCCCCCeeeeEEEeecccCcEEEC
Confidence 999989999999987211 013889999999976 89999
Q ss_pred CCCCCHH---HHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhc
Q psy1959 131 PEKMTFE---HAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQK 206 (296)
Q Consensus 131 P~~~~~~---~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~ 206 (296)
|++++++ .++.++.++++||+++ ..+++++|++|+|.|+ |++|++++|+| +..|+ +|+++++++++.+.++++
T Consensus 144 P~~~~~~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~vlI~g~-g~vg~~~~~~a-~~~G~~~vi~~~~~~~~~~~~~~~ 220 (375)
T cd08282 144 PDRDGAKEKDDYLMLSDIFPTGWHGL-ELAGVQPGDTVAVFGA-GPVGLMAAYSA-ILRGASRVYVVDHVPERLDLAESI 220 (375)
T ss_pred CCCCChhhhhheeeecchHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCEEEEECCCHHHHHHHHHc
Confidence 9999998 4677888999999999 7889999999999875 99999999999 67897 899999999999999999
Q ss_pred CCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCc------------cHHHHHHHhhccCceE
Q psy1959 207 GAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE------------DKTDLIRQKGAWAALT 259 (296)
Q Consensus 207 g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~------------~~~~~~~~lg~~~g~~ 259 (296)
|+ ..+++++ .++.+.+.+.++ +++|+++||+|+. .+..+++++ +++|++
T Consensus 221 g~-~~v~~~~-~~~~~~i~~~~~-~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l-~~~g~~ 281 (375)
T cd08282 221 GA-IPIDFSD-GDPVEQILGLEP-GGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVT-RPGGGI 281 (375)
T ss_pred CC-eEeccCc-ccHHHHHHHhhC-CCCCEEEECCCCcccccccccchHHHHHHHHHHh-hcCcEE
Confidence 98 4456655 567777887776 6899999999985 378899999 777666
No 80
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=99.97 E-value=5.6e-28 Score=216.18 Aligned_cols=215 Identities=27% Similarity=0.428 Sum_probs=192.7
Q ss_pred CCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCEEE
Q psy1959 27 TLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVL 106 (296)
Q Consensus 27 ~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V~ 106 (296)
.|.+.++ +++||+.++++|+.|+....|.+.....+|.++|+|++|+|+++ |+++.++++||+|+
T Consensus 2 ~p~~~~~-----~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~----------G~~v~~~~~Gd~V~ 66 (303)
T cd08251 2 VAPPGPG-----EVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAV----------GPHVTRLAVGDEVI 66 (303)
T ss_pred CCCCCCC-----EEEEEEEEeecChHHHHHHCCCCCCCCCCCCCcCceeeEEEEEE----------CCCCCCCCCCCEEE
Confidence 4567788 99999999999999999998876555567889999999999999 99999999999999
Q ss_pred EecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhC
Q psy1959 107 ALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIY 186 (296)
Q Consensus 107 ~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~ 186 (296)
++.....|+|++|+.++.+.++++|++++.++++.++.++.+||.++ +...+++|++++|++++|++|+++++++ +.+
T Consensus 67 ~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l-~~~~~~~g~~vli~~~~~~~g~~~~~~a-~~~ 144 (303)
T cd08251 67 AGTGESMGGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAF-ARAGLAKGEHILIQTATGGTGLMAVQLA-RLK 144 (303)
T ss_pred EecCCCCcceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHH-HhcCCCCCCEEEEecCCcHHHHHHHHHH-HHc
Confidence 87543458999999999999999999999999999999999999998 5789999999999999999999999999 678
Q ss_pred CCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEE
Q psy1959 187 KAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTF 260 (296)
Q Consensus 187 g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~ 260 (296)
|++|+++++++++.+.++++|++.+++... .++.+.+...+.++++|+++|++++.....+++++ +.+|.+.
T Consensus 145 g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~i~~~~~~~~~d~v~~~~~~~~~~~~~~~l-~~~g~~v 216 (303)
T cd08251 145 GAEIYATASSDDKLEYLKQLGVPHVINYVE-EDFEEEIMRLTGGRGVDVVINTLSGEAIQKGLNCL-APGGRYV 216 (303)
T ss_pred CCEEEEEcCCHHHHHHHHHcCCCEEEeCCC-ccHHHHHHHHcCCCCceEEEECCcHHHHHHHHHHh-ccCcEEE
Confidence 999999999999999999999988888766 66777788888778999999999888889999999 7777764
No 81
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=99.96 E-value=6.7e-28 Score=219.82 Aligned_cols=228 Identities=29% Similarity=0.356 Sum_probs=192.7
Q ss_pred cceEEecCCCCC------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCC
Q psy1959 13 SDLLLYNGSGDA------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTK 86 (296)
Q Consensus 13 ~~~~~~~~~~~~------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~ 86 (296)
|+++++..+++. .|.|.+.++ +|+||+.++++|+.|.....|.+..+.++|.++|+|++|+|+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~g~~~~G~v~~~---- 71 (338)
T cd08254 1 MKAWRFHKGSKGLLVLEEVPVPEPGPG-----EVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEV---- 71 (338)
T ss_pred CeeEEEecCCCCceEEeccCCCCCCCC-----eEEEEEEEEeeccHhHHHHcCCCcccCCCCEeccccccEEEEEE----
Confidence 455555544432 466667778 99999999999999999999887655567889999999999999
Q ss_pred CCCCCCCCCCCCCCCCCEEEEe------------------c-------CCCCCcccceEeeeCCceEECCCCCCHHHHhh
Q psy1959 87 SSSTEEDDEEDVLQVGDKVLAL------------------N-------KELLHGFSDQCVVHTNDVFKIPEKMTFEHAAS 141 (296)
Q Consensus 87 ~~~~~~g~~v~~~~~Gd~V~~~------------------~-------~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~ 141 (296)
|+++..+++||+|++. . ....|+|++|+.++.+.++++|++++..+++.
T Consensus 72 ------G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~ 145 (338)
T cd08254 72 ------GAGVTNFKVGDRVAVPAVIPCGACALCRRGRGNLCLNQGMPGLGIDGGFAEYIVVPARALVPVPDGVPFAQAAV 145 (338)
T ss_pred ------CCCCccCCCCCEEEECCCCCCCCChhhhCcCcccCCCCCccccccCCcceeeEEechHHeEECCCCCCHHHhhh
Confidence 9999999999999871 1 01148999999999999999999999999999
Q ss_pred hccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHH
Q psy1959 142 LADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLV 221 (296)
Q Consensus 142 l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 221 (296)
++.++.+||+++....+++++++|+|.| +|++|++++++| +..|++|+++++++++.+.++++|.+.++...+ ....
T Consensus 146 ~~~~~~ta~~~l~~~~~~~~~~~vli~g-~g~vG~~~~~la-~~~G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~-~~~~ 222 (338)
T cd08254 146 ATDAVLTPYHAVVRAGEVKPGETVLVIG-LGGLGLNAVQIA-KAMGAAVIAVDIKEEKLELAKELGADEVLNSLD-DSPK 222 (338)
T ss_pred hcchHHHHHHHHHhccCCCCCCEEEEEC-CcHHHHHHHHHH-HHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCCC-cCHH
Confidence 9999999999998888899999999986 499999999999 668999999999999999999999888777665 4555
Q ss_pred HHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE
Q psy1959 222 NKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF 260 (296)
Q Consensus 222 ~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~ 260 (296)
+.+ +...++++|+++|++|. ..+..+++++ +.+|.+.
T Consensus 223 ~~~-~~~~~~~~D~vid~~g~~~~~~~~~~~l-~~~G~~v 260 (338)
T cd08254 223 DKK-AAGLGGGFDVIFDFVGTQPTFEDAQKAV-KPGGRIV 260 (338)
T ss_pred HHH-HHhcCCCceEEEECCCCHHHHHHHHHHh-hcCCEEE
Confidence 555 55666789999999987 6889999999 7777764
No 82
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=99.96 E-value=1.1e-27 Score=218.56 Aligned_cols=244 Identities=18% Similarity=0.195 Sum_probs=199.2
Q ss_pred cceEEecCCCCC----------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEE
Q psy1959 13 SDLLLYNGSGDA----------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEV 82 (296)
Q Consensus 13 ~~~~~~~~~~~~----------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v 82 (296)
|+++++.++++. .|.|.+.++ +|+||+.++++|+.|+..+.|..+. ..+|.++|||++|+|+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~g~e~~G~v~~~ 74 (336)
T cd08252 1 MKAIGFTQPLPITDPDSLIDIELPKPVPGGR-----DLLVRVEAVSVNPVDTKVRAGGAPV-PGQPKILGWDASGVVEAV 74 (336)
T ss_pred CceEEecCCCCCCcccceeEccCCCCCCCCC-----EEEEEEEEEEcCHHHHHHHcCCCCC-CCCCcccccceEEEEEEc
Confidence 567777776643 355556677 9999999999999999988776542 345778999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCEEEEecC-CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCC
Q psy1959 83 ADTKSSSTEEDDEEDVLQVGDKVLALNK-ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKE 161 (296)
Q Consensus 83 ~~~~~~~~~~g~~v~~~~~Gd~V~~~~~-~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~ 161 (296)
|+++..+++||+|++... ...|+|++|+.++...++++|+++++++++.++..+.+||.++.+.+.+.+
T Consensus 75 ----------G~~v~~~~~Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~ 144 (336)
T cd08252 75 ----------GSEVTLFKVGDEVYYAGDITRPGSNAEYQLVDERIVGHKPKSLSFAEAAALPLTSLTAWEALFDRLGISE 144 (336)
T ss_pred ----------CCCCCCCCCCCEEEEcCCCCCCccceEEEEEchHHeeeCCCCCCHHHhhhhhhHHHHHHHHHHHhcCCCC
Confidence 999989999999998642 125899999999999999999999999999999999999999878888887
Q ss_pred -----CcEEEEEcCCCcHHHHHHHHHHHhCC-CEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccE
Q psy1959 162 -----KQTVLVTAAGGGLGLAAVDMATKIYK-AKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANV 235 (296)
Q Consensus 162 -----g~~vlI~Ga~g~vG~aa~~la~~~~g-~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~ 235 (296)
|++|+|+|++|++|++++++| +.+| ++|+++++++++.++++++|++.+++... ++.+.+... .++++|+
T Consensus 145 ~~~~~g~~vlV~g~~g~vg~~~~~~a-~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~i~~~-~~~~~d~ 220 (336)
T cd08252 145 DAENEGKTLLIIGGAGGVGSIAIQLA-KQLTGLTVIATASRPESIAWVKELGADHVINHHQ--DLAEQLEAL-GIEPVDY 220 (336)
T ss_pred CcCCCCCEEEEEcCCchHHHHHHHHH-HHcCCcEEEEEcCChhhHHHHHhcCCcEEEeCCc--cHHHHHHhh-CCCCCCE
Confidence 999999998899999999999 6689 99999999999999999999988777653 455556543 3468999
Q ss_pred EEECCCC-ccHHHHHHHhhccCceEEeec--------ccceeeeeEEeccc
Q psy1959 236 VFEAVGG-EDKTDLIRQKGAWAALTFTNE--------KSLVNKVLEVSGGK 277 (296)
Q Consensus 236 vld~~g~-~~~~~~~~~lg~~~g~~~~~~--------~~~~~k~~~i~g~~ 277 (296)
++|++|+ ..+..+++++ +.+|++..-. ..+..+++++.+..
T Consensus 221 vl~~~~~~~~~~~~~~~l-~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~ 270 (336)
T cd08252 221 IFCLTDTDQHWDAMAELI-APQGHICLIVDPQEPLDLGPLKSKSASFHWEF 270 (336)
T ss_pred EEEccCcHHHHHHHHHHh-cCCCEEEEecCCCCcccchhhhcccceEEEEE
Confidence 9999996 7899999999 7666664321 12235666666543
No 83
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.96 E-value=1.2e-27 Score=216.17 Aligned_cols=228 Identities=27% Similarity=0.373 Sum_probs=195.0
Q ss_pred cceEEecCCCCC-------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccC
Q psy1959 13 SDLLLYNGSGDA-------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADT 85 (296)
Q Consensus 13 ~~~~~~~~~~~~-------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~ 85 (296)
||++++.+++.. .+.|.+.++ +|+|++.++++|++|.....|....+...|.++|||++|+|+++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~--- 72 (326)
T cd08272 1 MKALVLESFGGPEVFELREVPRPQPGPG-----QVLVRVHASGVNPLDTKIRRGGAAARPPLPAILGCDVAGVVEAV--- 72 (326)
T ss_pred CeEEEEccCCCchheEEeecCCCCCCCC-----eEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceeEEEEEe---
Confidence 566777665542 344456677 99999999999999999988866544456889999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEecCC---CCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCC
Q psy1959 86 KSSSTEEDDEEDVLQVGDKVLALNKE---LLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEK 162 (296)
Q Consensus 86 ~~~~~~~g~~v~~~~~Gd~V~~~~~~---~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g 162 (296)
|+++..+++||+|+++... ..|+|++|+.++.+.++++|+++++..++.++..+.+||+++.+..++++|
T Consensus 73 -------G~~~~~~~~Gd~V~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~ 145 (326)
T cd08272 73 -------GEGVTRFRVGDEVYGCAGGLGGLQGSLAEYAVVDARLLALKPANLSMREAAALPLVGITAWEGLVDRAAVQAG 145 (326)
T ss_pred -------CCCCCCCCCCCEEEEccCCcCCCCCceeEEEEecHHHcccCCCCCCHHHHHHhHHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999987511 138899999999999999999999999999999999999998888999999
Q ss_pred cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959 163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG 242 (296)
Q Consensus 163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~ 242 (296)
++++|+|+.|++|++++++| +..|++|++++++ ++.+.++++|++..++... . +.+.+.+.+.++++|+++|++|+
T Consensus 146 ~~vli~g~~~~~g~~~~~~a-~~~g~~v~~~~~~-~~~~~~~~~g~~~~~~~~~-~-~~~~~~~~~~~~~~d~v~~~~~~ 221 (326)
T cd08272 146 QTVLIHGGAGGVGHVAVQLA-KAAGARVYATASS-EKAAFARSLGADPIIYYRE-T-VVEYVAEHTGGRGFDVVFDTVGG 221 (326)
T ss_pred CEEEEEcCCCcHHHHHHHHH-HHcCCEEEEEech-HHHHHHHHcCCCEEEecch-h-HHHHHHHhcCCCCCcEEEECCCh
Confidence 99999998899999999999 6789999999988 8899999999887777765 4 77778888877889999999999
Q ss_pred ccHHHHHHHhhccCceEE
Q psy1959 243 EDKTDLIRQKGAWAALTF 260 (296)
Q Consensus 243 ~~~~~~~~~lg~~~g~~~ 260 (296)
.....+++++ +.+|.+.
T Consensus 222 ~~~~~~~~~l-~~~g~~v 238 (326)
T cd08272 222 ETLDASFEAV-ALYGRVV 238 (326)
T ss_pred HHHHHHHHHh-ccCCEEE
Confidence 8888899999 6666654
No 84
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.96 E-value=8e-28 Score=220.56 Aligned_cols=226 Identities=27% Similarity=0.332 Sum_probs=187.8
Q ss_pred cceEEecCCCCC----CCCCCC-CCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCC
Q psy1959 13 SDLLLYNGSGDA----KPTLPL-VPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKS 87 (296)
Q Consensus 13 ~~~~~~~~~~~~----~~~p~~-~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~ 87 (296)
|++++|+++++. .|.|.| .++ ||+||+.++++|++|+..+.|.++. ..|.++|||++|+|+++
T Consensus 1 m~~~~~~~~~~~~~~~~~~p~~~~~~-----ev~V~v~~~~i~~~d~~~~~g~~~~--~~~~~~g~e~~G~V~~v----- 68 (345)
T cd08287 1 MRATVIHGPGDIRVEEVPDPVIEEPT-----DAVIRVVATCVCGSDLWPYRGVSPT--RAPAPIGHEFVGVVEEV----- 68 (345)
T ss_pred CceeEEecCCceeEEeCCCCCCCCCC-----eEEEEEeeeeecccchhhhcCCCCC--CCCcccccceEEEEEEe-----
Confidence 678888876655 567775 678 9999999999999999998887642 34789999999999999
Q ss_pred CCCCCCCCCCCCCCCCEEEE-ecC------------------------CCCCcccceEeeeCC--ceEECCCCCCHHHH-
Q psy1959 88 SSTEEDDEEDVLQVGDKVLA-LNK------------------------ELLHGFSDQCVVHTN--DVFKIPEKMTFEHA- 139 (296)
Q Consensus 88 ~~~~~g~~v~~~~~Gd~V~~-~~~------------------------~~~g~~~~~~~v~~~--~~~~iP~~~~~~~a- 139 (296)
|+++..+++||+|++ +.. ...|+|++|+.++.+ .++++|++++++.+
T Consensus 69 -----G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lP~~l~~~~~~ 143 (345)
T cd08287 69 -----GSEVTSVKPGDFVIAPFAISDGTCPFCRAGFTTSCVHGGFWGAFVDGGQGEYVRVPLADGTLVKVPGSPSDDEDL 143 (345)
T ss_pred -----CCCCCccCCCCEEEeccccCCCCChhhhCcCcccCCCCCcccCCCCCceEEEEEcchhhCceEECCCCCChhhhh
Confidence 999999999999987 211 123899999999975 89999999987221
Q ss_pred ----hhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCE-EEEEeCCcchHHHHHhcCCcEEEEc
Q psy1959 140 ----ASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAK-VIGVCNSEDKTDLIRQKGAWAALTF 214 (296)
Q Consensus 140 ----a~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~-Vi~~~~~~~~~~~~~~~g~~~~~~~ 214 (296)
+++...+.+||+++ ..+++++|++++|.| .|++|++++++| +..|++ ++++++++++.+.++++|++.++++
T Consensus 144 ~~~~~~l~~~~~~a~~~~-~~~~~~~g~~vlI~g-~g~vg~~~~~la-k~~G~~~v~~~~~~~~~~~~~~~~ga~~v~~~ 220 (345)
T cd08287 144 LPSLLALSDVMGTGHHAA-VSAGVRPGSTVVVVG-DGAVGLCAVLAA-KRLGAERIIAMSRHEDRQALAREFGATDIVAE 220 (345)
T ss_pred hhhhHhhhcHHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHH-HHcCCCEEEEECCCHHHHHHHHHcCCceEecC
Confidence 23446789999998 578999999999987 599999999999 678995 7888888888889999999888888
Q ss_pred CCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE
Q psy1959 215 TNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF 260 (296)
Q Consensus 215 ~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~ 260 (296)
+. .++.+.+.+.+++.++|+++|++|+ ..+..+++++ +.+|++.
T Consensus 221 ~~-~~~~~~i~~~~~~~~~d~il~~~g~~~~~~~~~~~l-~~~g~~v 265 (345)
T cd08287 221 RG-EEAVARVRELTGGVGADAVLECVGTQESMEQAIAIA-RPGGRVG 265 (345)
T ss_pred Cc-ccHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHhh-ccCCEEE
Confidence 76 6777888888877899999999987 6889999999 7777663
No 85
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=99.96 E-value=1.2e-27 Score=217.44 Aligned_cols=223 Identities=29% Similarity=0.388 Sum_probs=188.1
Q ss_pred cceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCC
Q psy1959 13 SDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKS 87 (296)
Q Consensus 13 ~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~ 87 (296)
|+++++..+.+. .|.|.+.++ +|+|++.++++|+.|+....|.++. ...|.++|+|++|+|+++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~~~-----~v~v~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~v~~~----- 69 (332)
T cd08259 1 MKAAILHKPNKPLQIEEVPDPEPGPG-----EVLIKVKAAGVCYRDLLFWKGFFPR-GKYPLILGHEIVGTVEEV----- 69 (332)
T ss_pred CeEEEEecCCCceEEEEccCCCCCCC-----eEEEEEEEEecchhhhHHhcCCCCC-CCCCeeccccceEEEEEE-----
Confidence 567777653323 577777888 9999999999999999999886653 345789999999999999
Q ss_pred CCCCCCCCCCCCCCCCEEEEecC-------------------------CCCCcccceEeeeCCceEECCCCCCHHHHhhh
Q psy1959 88 SSTEEDDEEDVLQVGDKVLALNK-------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASL 142 (296)
Q Consensus 88 ~~~~~g~~v~~~~~Gd~V~~~~~-------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l 142 (296)
|++++.+++||+|+++.. ...|+|++|++++...++++|+++++++++.+
T Consensus 70 -----G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~ 144 (332)
T cd08259 70 -----GEGVERFKPGDRVILYYYIPCGKCEYCLSGEENLCRNRAEYGEEVDGGFAEYVKVPERSLVKLPDNVSDESAALA 144 (332)
T ss_pred -----CCCCccCCCCCEEEECCCCCCcCChhhhCCCcccCCCccccccccCCeeeeEEEechhheEECCCCCCHHHHhhh
Confidence 999999999999998751 01489999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHH
Q psy1959 143 ADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVN 222 (296)
Q Consensus 143 ~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 222 (296)
+.++.+||+++.. ..+.++++++|+|++|++|+++++++ +..|++|+++++++++.+.+++++.+.+++.. ++.+
T Consensus 145 ~~~~~ta~~~l~~-~~~~~~~~vlI~ga~g~vG~~~~~~a-~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 219 (332)
T cd08259 145 ACVVGTAVHALKR-AGVKKGDTVLVTGAGGGVGIHAIQLA-KALGARVIAVTRSPEKLKILKELGADYVIDGS---KFSE 219 (332)
T ss_pred ccHHHHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHHH-HHcCCeEEEEeCCHHHHHHHHHcCCcEEEecH---HHHH
Confidence 9999999999966 88999999999999999999999999 67899999999988898988888876666442 2445
Q ss_pred HHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEE
Q psy1959 223 KVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTF 260 (296)
Q Consensus 223 ~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~ 260 (296)
.+.+.. ++|++++++|......+++++ +.+|.+.
T Consensus 220 ~~~~~~---~~d~v~~~~g~~~~~~~~~~~-~~~g~~v 253 (332)
T cd08259 220 DVKKLG---GADVVIELVGSPTIEESLRSL-NKGGRLV 253 (332)
T ss_pred HHHhcc---CCCEEEECCChHHHHHHHHHh-hcCCEEE
Confidence 555443 799999999998888999999 6666664
No 86
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=99.96 E-value=1.1e-27 Score=219.53 Aligned_cols=242 Identities=24% Similarity=0.277 Sum_probs=194.9
Q ss_pred cceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCC-C-CCCCCCCcCCCceeEEEEEEccC
Q psy1959 13 SDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSG-D-AKPTLPLVPGFEFSGTVIEVADT 85 (296)
Q Consensus 13 ~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~-~-~~~~~p~~~G~e~~G~V~~v~~~ 85 (296)
||++++.++++. .|.|.|.++ ||+||+.++++|++|+.++.+.. . ....+|.++|||++|+|+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~p~~~~~-----evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~v--- 72 (341)
T PRK05396 1 MKALVKLKAEPGLWLTDVPVPEPGPN-----DVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEV--- 72 (341)
T ss_pred CceEEEecCCCceEEEECCCCCCCCC-----eEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEe---
Confidence 577888777753 577788888 99999999999999999876632 1 12346789999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEecC-------------------------CCCCcccceEeeeCCceEECCCCCCHHHHh
Q psy1959 86 KSSSTEEDDEEDVLQVGDKVLALNK-------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAA 140 (296)
Q Consensus 86 ~~~~~~~g~~v~~~~~Gd~V~~~~~-------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa 140 (296)
|+++..+++||+|++... ...|+|++|+.++.+.++++|+++++++++
T Consensus 73 -------G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~l~~~~~~ 145 (341)
T PRK05396 73 -------GSEVTGFKVGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKGVGVNRPGAFAEYLVIPAFNVWKIPDDIPDDLAA 145 (341)
T ss_pred -------CCCCCcCCCCCEEEECCCCCCCCChhhhCcChhhCCCcceeeecCCCcceeeEEechHHeEECcCCCCHHHhH
Confidence 999999999999997521 024899999999999999999999998887
Q ss_pred hhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCCcEEEEcCCchh
Q psy1959 141 SLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALTFTNEKS 219 (296)
Q Consensus 141 ~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 219 (296)
. ..++.+++.++.. ...+|++|+|.|+ |++|++++|+| +..|+ +|+++++++++.+.++++|++.++++++ .+
T Consensus 146 ~-~~~~~~~~~~~~~--~~~~g~~vlV~~~-g~vg~~~~~la-~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~~~~~-~~ 219 (341)
T PRK05396 146 I-FDPFGNAVHTALS--FDLVGEDVLITGA-GPIGIMAAAVA-KHVGARHVVITDVNEYRLELARKMGATRAVNVAK-ED 219 (341)
T ss_pred h-hhHHHHHHHHHHc--CCCCCCeEEEECC-CHHHHHHHHHH-HHcCCCEEEEEcCCHHHHHHHHHhCCcEEecCcc-cc
Confidence 4 4677777766532 3468999999885 99999999999 66899 6888888888999999999988888876 67
Q ss_pred HHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEeec----------ccceeeeeEEecc
Q psy1959 220 LVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFTNE----------KSLVNKVLEVSGG 276 (296)
Q Consensus 220 ~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~~~----------~~~~~k~~~i~g~ 276 (296)
+.+.+.+.+.++++|++|||.|+ ..+..+++++ +.+|.+..-. ..+..+++++.++
T Consensus 220 ~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l-~~~G~~v~~g~~~~~~~~~~~~~~~~~~~l~~~ 286 (341)
T PRK05396 220 LRDVMAELGMTEGFDVGLEMSGAPSAFRQMLDNM-NHGGRIAMLGIPPGDMAIDWNKVIFKGLTIKGI 286 (341)
T ss_pred HHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHHH-hcCCEEEEEecCCCCCcccHHHHhhcceEEEEE
Confidence 77888888777899999999997 6789999999 7777664321 2444566666654
No 87
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.96 E-value=1e-27 Score=219.47 Aligned_cols=226 Identities=22% Similarity=0.316 Sum_probs=183.9
Q ss_pred cceEEecCCCCC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCC----------CCCCCCCcCCCceeEE
Q psy1959 13 SDLLLYNGSGDA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGD----------AKPTLPLVPGFEFSGT 78 (296)
Q Consensus 13 ~~~~~~~~~~~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~----------~~~~~p~~~G~e~~G~ 78 (296)
|+++++..+ .. .|.|.+.++ ||+||+.++++|+.|+....|... ....+|.++|+|++|+
T Consensus 1 m~a~~~~~~-~~~~~~~~~p~~~~~-----~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~ 74 (341)
T cd08262 1 MRAAVFRDG-PLVVRDVPDPEPGPG-----QVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGE 74 (341)
T ss_pred CceEEEeCC-ceEEEecCCCCCCCC-----eEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEE
Confidence 466666544 22 567788888 999999999999999999887321 1223578999999999
Q ss_pred EEEEccCCCCCCCCCCCCCC-CCCCCEEEEecC---------------CCCCcccceEeeeCCceEECCCCCCHHHHhhh
Q psy1959 79 VIEVADTKSSSTEEDDEEDV-LQVGDKVLALNK---------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASL 142 (296)
Q Consensus 79 V~~v~~~~~~~~~~g~~v~~-~~~Gd~V~~~~~---------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l 142 (296)
|+++ |++++. +++||+|++++. ...|+|++|++++.+.++++|++++.++++ +
T Consensus 75 V~~v----------G~~v~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~s~~~a~-~ 143 (341)
T cd08262 75 VVDY----------GPGTERKLKVGTRVTSLPLLLCGQGASCGIGLSPEAPGGYAEYMLLSEALLLRVPDGLSMEDAA-L 143 (341)
T ss_pred EEEe----------CCCCcCCCCCCCEEEecCCcCCCCChhhhCCCCcCCCCceeeeEEechHHeEECCCCCCHHHhh-h
Confidence 9999 999987 999999998731 124899999999999999999999999876 6
Q ss_pred ccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCE-EEEEeCCcchHHHHHhcCCcEEEEcCCch---
Q psy1959 143 ADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAK-VIGVCNSEDKTDLIRQKGAWAALTFTNEK--- 218 (296)
Q Consensus 143 ~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~-Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~--- 218 (296)
+.++++||+++ ..+++++|++|+|+|+ |++|++++|+| +.+|++ ++++++++++.+.++++|++.++++++..
T Consensus 144 ~~~~~~a~~~~-~~~~~~~g~~VlI~g~-g~vg~~~~~la-~~~G~~~v~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~ 220 (341)
T cd08262 144 TEPLAVGLHAV-RRARLTPGEVALVIGC-GPIGLAVIAAL-KARGVGPIVASDFSPERRALALAMGADIVVDPAADSPFA 220 (341)
T ss_pred hhhHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCcEEEEECCCHHHHHHHHHcCCcEEEcCCCcCHHH
Confidence 78899999986 7899999999999985 99999999999 568986 67777788899999999988778775411
Q ss_pred hHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE
Q psy1959 219 SLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF 260 (296)
Q Consensus 219 ~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~ 260 (296)
.+. .+.+...++++|+++|++|+ ..+..+++++ +.+|++.
T Consensus 221 ~~~-~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l-~~~g~~v 261 (341)
T cd08262 221 AWA-AELARAGGPKPAVIFECVGAPGLIQQIIEGA-PPGGRIV 261 (341)
T ss_pred HHH-HHHHHhCCCCCCEEEECCCCHHHHHHHHHHh-ccCCEEE
Confidence 222 34455556789999999998 5788899999 7777764
No 88
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=99.96 E-value=1.1e-27 Score=219.82 Aligned_cols=215 Identities=24% Similarity=0.360 Sum_probs=180.8
Q ss_pred CCCCCCC-CCCCCCCcEEEEeeeeecChhhHHHHcCCCC--------------CCCCCCCcCCCceeEEEEEEccCCCCC
Q psy1959 25 KPTLPLV-PGFEFSGTIIEKKMMTRINSSDLLLYNGSGD--------------AKPTLPLVPGFEFSGTVIEVADTKSSS 89 (296)
Q Consensus 25 ~~~p~~~-~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~--------------~~~~~p~~~G~e~~G~V~~v~~~~~~~ 89 (296)
.+.|.|. ++ ||+||+.++++|++|+....|... ....+|.++|||++|+|+.+
T Consensus 21 ~~~p~~~~~~-----ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~e~~G~v~~v------- 88 (350)
T cd08248 21 ARIPVIRKPN-----QVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRDCSGVVVDI------- 88 (350)
T ss_pred cCCCCCCCCC-----eEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecceeEEEEEec-------
Confidence 5666674 78 999999999999999999887421 02356889999999999999
Q ss_pred CCCCCCCCCCCCCCEEEEecC-CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCC----CcE
Q psy1959 90 TEEDDEEDVLQVGDKVLALNK-ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKE----KQT 164 (296)
Q Consensus 90 ~~~g~~v~~~~~Gd~V~~~~~-~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~----g~~ 164 (296)
|+++.++++||+|++... ...|+|++|+.++.+.++++|+++++++++.++.++.+||.++.+...+.+ |++
T Consensus 89 ---G~~v~~~~~Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~g~~ 165 (350)
T cd08248 89 ---GSGVKSFEIGDEVWGAVPPWSQGTHAEYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKNAAGKR 165 (350)
T ss_pred ---CCCcccCCCCCEEEEecCCCCCccceeEEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHhccCCCccCCCCE
Confidence 999999999999998752 124899999999999999999999999999999999999999877777754 999
Q ss_pred EEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCcc
Q psy1959 165 VLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGED 244 (296)
Q Consensus 165 vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~ 244 (296)
++|+|++|++|++++++| +.+|++|+++.++ ++.+.++++|++..++..+ .++.+.+.. .+++|+++|++|+..
T Consensus 166 vlI~g~~g~ig~~~~~~a-~~~G~~v~~~~~~-~~~~~~~~~g~~~~~~~~~-~~~~~~l~~---~~~vd~vi~~~g~~~ 239 (350)
T cd08248 166 VLILGGSGGVGTFAIQLL-KAWGAHVTTTCST-DAIPLVKSLGADDVIDYNN-EDFEEELTE---RGKFDVILDTVGGDT 239 (350)
T ss_pred EEEECCCChHHHHHHHHH-HHCCCeEEEEeCc-chHHHHHHhCCceEEECCC-hhHHHHHHh---cCCCCEEEECCChHH
Confidence 999999899999999999 6789999988754 6778888899887777765 445444433 358999999999988
Q ss_pred HHHHHHHhhccCceEEe
Q psy1959 245 KTDLIRQKGAWAALTFT 261 (296)
Q Consensus 245 ~~~~~~~lg~~~g~~~~ 261 (296)
...+++++ +.+|++..
T Consensus 240 ~~~~~~~l-~~~G~~v~ 255 (350)
T cd08248 240 EKWALKLL-KKGGTYVT 255 (350)
T ss_pred HHHHHHHh-ccCCEEEE
Confidence 99999999 77777743
No 89
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=99.96 E-value=1.5e-27 Score=218.44 Aligned_cols=227 Identities=25% Similarity=0.259 Sum_probs=188.8
Q ss_pred CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCE
Q psy1959 25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDK 104 (296)
Q Consensus 25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~ 104 (296)
.+.|.|.++ ||+||+.++++|++|...+.|.... ..+|.++|||++|+|+++ |+++..+++||+
T Consensus 17 ~~~p~~~~~-----evlirv~a~~i~~~d~~~~~g~~~~-~~~p~~~g~e~~G~V~~v----------G~~v~~~~~Gd~ 80 (337)
T cd05283 17 FERRPLGPD-----DVDIKITYCGVCHSDLHTLRNEWGP-TKYPLVPGHEIVGIVVAV----------GSKVTKFKVGDR 80 (337)
T ss_pred ccCCCCCCC-----eEEEEEEEecccchHHHHhcCCcCC-CCCCcccCcceeeEEEEE----------CCCCcccCCCCE
Confidence 678888999 9999999999999999999887643 456889999999999999 999999999999
Q ss_pred EEEec---------------------------------CCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHH
Q psy1959 105 VLALN---------------------------------KELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQI 151 (296)
Q Consensus 105 V~~~~---------------------------------~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~ 151 (296)
|+... ....|+|++|+.++.+.++++|+++++++++.+...+.+||+
T Consensus 81 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~l~~~~~ta~~ 160 (337)
T cd05283 81 VGVGCQVDSCGTCEQCKSGEEQYCPKGVVTYNGKYPDGTITQGGYADHIVVDERFVFKIPEGLDSAAAAPLLCAGITVYS 160 (337)
T ss_pred EEEecCCCCCCCCccccCCchhcCcchhhcccccccCCCcCCCcceeEEEechhheEECCCCCCHHHhhhhhhHHHHHHH
Confidence 97310 012589999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCC
Q psy1959 152 VFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGK 231 (296)
Q Consensus 152 ~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~ 231 (296)
++.+ ..+++|++++|.|+ |++|++++++| +..|++|+++++++++.++++++|++.+++..+ .+... . . ++
T Consensus 161 ~~~~-~~~~~g~~vlV~g~-g~vG~~~~~~a-~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~-~~~~~---~-~-~~ 231 (337)
T cd05283 161 PLKR-NGVGPGKRVGVVGI-GGLGHLAVKFA-KALGAEVTAFSRSPSKKEDALKLGADEFIATKD-PEAMK---K-A-AG 231 (337)
T ss_pred HHHh-cCCCCCCEEEEECC-cHHHHHHHHHH-HHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcc-hhhhh---h-c-cC
Confidence 9854 56899999999875 99999999999 568999999999999999999999888877654 33221 1 1 45
Q ss_pred cccEEEECCCCc-cHHHHHHHhhccCceEEe----------ecccceeeeeEEeccc
Q psy1959 232 YANVVFEAVGGE-DKTDLIRQKGAWAALTFT----------NEKSLVNKVLEVSGGK 277 (296)
Q Consensus 232 g~d~vld~~g~~-~~~~~~~~lg~~~g~~~~----------~~~~~~~k~~~i~g~~ 277 (296)
++|+++||+|.. ....+++++ +.+|.+.. +...++.+++++.++.
T Consensus 232 ~~d~v~~~~g~~~~~~~~~~~l-~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~ 287 (337)
T cd05283 232 SLDLIIDTVSASHDLDPYLSLL-KPGGTLVLVGAPEEPLPVPPFPLIFGRKSVAGSL 287 (337)
T ss_pred CceEEEECCCCcchHHHHHHHh-cCCCEEEEEeccCCCCccCHHHHhcCceEEEEec
Confidence 899999999996 589999999 66666632 2223466888888765
No 90
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=99.96 E-value=9e-28 Score=211.52 Aligned_cols=224 Identities=31% Similarity=0.456 Sum_probs=189.4
Q ss_pred cEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCEEEEecCC-------
Q psy1959 39 TIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKE------- 111 (296)
Q Consensus 39 evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~~------- 111 (296)
||+||+.++++|+.|+....|.......+|.++|+|++|+|+++ |+++..|++||+|++....
T Consensus 1 ~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~G~e~~G~v~~~----------G~~v~~~~~Gd~V~~~~~~~~~~~~~ 70 (271)
T cd05188 1 EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEV----------GPGVTGVKVGDRVVVLPNLGCGTCEL 70 (271)
T ss_pred CeEEEEEEEEecchhHHHHcCCCCcCCCCCcccccccEEEEEEE----------CCCCCcCCCCCEEEEcCCCCCCCCHH
Confidence 68999999999999999998876533456889999999999999 9999999999999987521
Q ss_pred --------------CCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHH
Q psy1959 112 --------------LLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLA 177 (296)
Q Consensus 112 --------------~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~a 177 (296)
..|+|++|+.++.+.++++|+++++++++.++.++.+||+++.....++++++|+|+|+++ +|++
T Consensus 71 ~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~-~G~~ 149 (271)
T cd05188 71 CRELCPGGGILGEGLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGG-VGLL 149 (271)
T ss_pred HHhhCCCCCEeccccCCcceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCCCCCCEEEEECCCH-HHHH
Confidence 2589999999999999999999999999999999999999998777779999999999866 9999
Q ss_pred HHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccC
Q psy1959 178 AVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWA 256 (296)
Q Consensus 178 a~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~ 256 (296)
+++++ +..|.+|+++++++++.+.++++|++..++..+ .+..+.+. ...++++|+++++++. .....+++++ +.+
T Consensus 150 ~~~~a-~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~-~~~~~~~d~vi~~~~~~~~~~~~~~~l-~~~ 225 (271)
T cd05188 150 AAQLA-KAAGARVIVTDRSDEKLELAKELGADHVIDYKE-EDLEEELR-LTGGGGADVVIDAVGGPETLAQALRLL-RPG 225 (271)
T ss_pred HHHHH-HHcCCeEEEEcCCHHHHHHHHHhCCceeccCCc-CCHHHHHH-HhcCCCCCEEEECCCCHHHHHHHHHhc-ccC
Confidence 99999 668999999999999999999999877777665 45555555 5556789999999999 7889999999 777
Q ss_pred ceEEeec-----------ccceeeeeEEeccc
Q psy1959 257 ALTFTNE-----------KSLVNKVLEVSGGK 277 (296)
Q Consensus 257 g~~~~~~-----------~~~~~k~~~i~g~~ 277 (296)
|.+.... ...+.+++++.++.
T Consensus 226 G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (271)
T cd05188 226 GRIVVVGGTSGGPPLDDLRRLLFKELTIIGST 257 (271)
T ss_pred CEEEEEccCCCCCCcccHHHHHhcceEEEEee
Confidence 7664321 23456677777665
No 91
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=99.96 E-value=1.9e-27 Score=216.00 Aligned_cols=230 Identities=20% Similarity=0.298 Sum_probs=186.7
Q ss_pred CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCE
Q psy1959 25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDK 104 (296)
Q Consensus 25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~ 104 (296)
.|.|.+.++ +|+||+.++++|+.|+..+.|.+.....+|.++|||++|+|+.. + +..|++||+
T Consensus 19 ~~~p~~~~~-----~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~~----------~--~~~~~~Gd~ 81 (323)
T TIGR02823 19 LDLSDLPEG-----DVLIKVAYSSLNYKDALAITGKGGVVRSYPMIPGIDAAGTVVSS----------E--DPRFREGDE 81 (323)
T ss_pred cCCCCCCCC-----eEEEEEEEEEcCHHHHHHHcCCCCCCCCCCccceeeeEEEEEec----------C--CCCCCCCCE
Confidence 677788888 99999999999999999998876543456889999999999875 3 457999999
Q ss_pred EEEecC----CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHc--CCCCCc-EEEEEcCCCcHHHH
Q psy1959 105 VLALNK----ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHA--KLKEKQ-TVLVTAAGGGLGLA 177 (296)
Q Consensus 105 V~~~~~----~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~--~~~~g~-~vlI~Ga~g~vG~a 177 (296)
|++... ...|+|++|+.++.+.++++|+++++++++.++..+.+||.++.... .+.+++ +++|+|++|.+|++
T Consensus 82 V~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~g~~g~vg~~ 161 (323)
T TIGR02823 82 VIVTGYGLGVSHDGGYSQYARVPADWLVPLPEGLSLREAMALGTAGFTAALSVMALERNGLTPEDGPVLVTGATGGVGSL 161 (323)
T ss_pred EEEccCCCCCCCCccceEEEEEchhheEECCCCCCHHHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEEEEcCCcHHHHH
Confidence 998741 12489999999999999999999999999999999999988875443 378898 99999999999999
Q ss_pred HHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCc
Q psy1959 178 AVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAA 257 (296)
Q Consensus 178 a~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g 257 (296)
++++| +.+|++++++++++++.+.++++|++.+++..+ .+. .+.....+ ++|+++|++|++.+..+++++ +.+|
T Consensus 162 ~~~la-~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~-~~~--~~~~~~~~-~~d~vld~~g~~~~~~~~~~l-~~~G 235 (323)
T TIGR02823 162 AVAIL-SKLGYEVVASTGKAEEEDYLKELGASEVIDRED-LSP--PGKPLEKE-RWAGAVDTVGGHTLANVLAQL-KYGG 235 (323)
T ss_pred HHHHH-HHcCCeEEEEeCCHHHHHHHHhcCCcEEEcccc-HHH--HHHHhcCC-CceEEEECccHHHHHHHHHHh-CCCC
Confidence 99999 678999999988889999999999987777644 222 34444433 599999999998889999999 7777
Q ss_pred eEEeec-----------ccceeeeeEEeccc
Q psy1959 258 LTFTNE-----------KSLVNKVLEVSGGK 277 (296)
Q Consensus 258 ~~~~~~-----------~~~~~k~~~i~g~~ 277 (296)
++.... ..++.+++++.+..
T Consensus 236 ~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (323)
T TIGR02823 236 AVAACGLAGGPDLPTTVLPFILRGVSLLGID 266 (323)
T ss_pred EEEEEcccCCCCccccHHHHhhcceEEEEEe
Confidence 663321 22336677777643
No 92
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=99.96 E-value=8e-28 Score=219.49 Aligned_cols=222 Identities=27% Similarity=0.329 Sum_probs=187.6
Q ss_pred cceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCC
Q psy1959 13 SDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKS 87 (296)
Q Consensus 13 ~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~ 87 (296)
|+++++.++++. .|.|.+.++ |++||+.++++|+.|+....|.++. .++|.++|||++|+|+++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~-----~v~V~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~v~~~----- 69 (334)
T PRK13771 1 MKAVILPGFKQGYRIEEVPDPKPGKD-----EVVIKVNYAGLCYRDLLQLQGFYPR-MKYPVILGHEVVGTVEEV----- 69 (334)
T ss_pred CeeEEEcCCCCCcEEEeCCCCCCCCC-----eEEEEEEEEeechhhHHHhcCCCCC-CCCCeeccccceEEEEEe-----
Confidence 567777777663 577788888 9999999999999999988886643 355789999999999999
Q ss_pred CCCCCCCCCCCCCCCCEEEEecC-------------------------CCCCcccceEeeeCCceEECCCCCCHHHHhhh
Q psy1959 88 SSTEEDDEEDVLQVGDKVLALNK-------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASL 142 (296)
Q Consensus 88 ~~~~~g~~v~~~~~Gd~V~~~~~-------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l 142 (296)
|+++..+++||+|++... +..|+|++|+.++.+.++++|+++++.+++.+
T Consensus 70 -----g~~~~~~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~a~l 144 (334)
T PRK13771 70 -----GENVKGFKPGDRVASLLYAPDGTCEYCRSGEEAYCKNRLGYGEELDGFFAEYAKVKVTSLVKVPPNVSDEGAVIV 144 (334)
T ss_pred -----CCCCccCCCCCEEEECCCCCCcCChhhcCCCcccCccccccccccCceeeeeeecchhceEECCCCCCHHHhhcc
Confidence 998888999999998641 11489999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHH
Q psy1959 143 ADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVN 222 (296)
Q Consensus 143 ~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 222 (296)
..++.+||+++... .++++++++|+|++|.+|++++++| +..|++|+++++++++.+.++++ ++.+++.+ ++.+
T Consensus 145 ~~~~~~a~~~~~~~-~~~~~~~vlI~g~~g~~g~~~~~la-~~~g~~vi~~~~~~~~~~~~~~~-~~~~~~~~---~~~~ 218 (334)
T PRK13771 145 PCVTGMVYRGLRRA-GVKKGETVLVTGAGGGVGIHAIQVA-KALGAKVIAVTSSESKAKIVSKY-ADYVIVGS---KFSE 218 (334)
T ss_pred cchHHHHHHHHHhc-CCCCCCEEEEECCCccHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHH-HHHhcCch---hHHH
Confidence 99999999999665 8999999999999999999999999 67899999999999999988877 55544442 3444
Q ss_pred HHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEE
Q psy1959 223 KVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTF 260 (296)
Q Consensus 223 ~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~ 260 (296)
.+++. + ++|+++||+|+..+..+++++ +.+|++.
T Consensus 219 ~v~~~--~-~~d~~ld~~g~~~~~~~~~~l-~~~G~~v 252 (334)
T PRK13771 219 EVKKI--G-GADIVIETVGTPTLEESLRSL-NMGGKII 252 (334)
T ss_pred HHHhc--C-CCcEEEEcCChHHHHHHHHHH-hcCCEEE
Confidence 55553 2 699999999998889999999 7777764
No 93
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=99.96 E-value=1.6e-27 Score=223.13 Aligned_cols=232 Identities=24% Similarity=0.318 Sum_probs=191.0
Q ss_pred CcceEEecC--CCCC--------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCC---------CCCCC-CcC
Q psy1959 12 SSDLLLYNG--SGDA--------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDA---------KPTLP-LVP 71 (296)
Q Consensus 12 ~~~~~~~~~--~~~~--------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~---------~~~~p-~~~ 71 (296)
.|+++++.. .+++ .|.|.|.++ +|+||+.++++|+.|.+...+.... ....| .++
T Consensus 7 ~~~a~~~~~~~~~~~~~~~~~~~~~~p~l~~~-----evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (398)
T TIGR01751 7 TMYAFAIREERDGDPRQAIQLEVVPVPELGPG-----EVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHII 81 (398)
T ss_pred hhhheEEecccCCCcccceEEeecCCCCCCCC-----eEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceec
Confidence 478888854 3322 577777788 9999999999999998876553210 00123 379
Q ss_pred CCceeEEEEEEccCCCCCCCCCCCCCCCCCCCEEEEecC--------------------------CCCCcccceEeeeCC
Q psy1959 72 GFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNK--------------------------ELLHGFSDQCVVHTN 125 (296)
Q Consensus 72 G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~--------------------------~~~g~~~~~~~v~~~ 125 (296)
|||++|+|+++ |+++..+++||+|++... ...|+|+||+.++.+
T Consensus 82 G~e~~G~V~~v----------G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~ae~~~v~~~ 151 (398)
T TIGR01751 82 GSDASGVVWRV----------GPGVTRWKVGDEVVASCLQVDLTAPDGRVGDPMLSSEQRIWGYETNFGSFAEFALVKDY 151 (398)
T ss_pred ccceEEEEEEe----------CCCCCCCCCCCEEEEccccccCCchhhccCccccccccccccccCCCccceEEEEechH
Confidence 99999999999 999999999999998531 124899999999999
Q ss_pred ceEECCCCCCHHHHhhhccHHHHHHHHHHH--HcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH
Q psy1959 126 DVFKIPEKMTFEHAASLADSYSTAQIVFSR--HAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI 203 (296)
Q Consensus 126 ~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~--~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~ 203 (296)
.++++|++++.++++.+..++.+||+++.. .+++.+|++++|+|++|++|++++++| +.+|++++++++++++.+.+
T Consensus 152 ~~~~vP~~l~~~~aa~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~a-k~~G~~vi~~~~~~~~~~~~ 230 (398)
T TIGR01751 152 QLMPKPKHLTWEEAACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLA-RAGGGNPVAVVSSPEKAEYC 230 (398)
T ss_pred HeEECCCCCCHHHHhhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHH-HHcCCeEEEEcCCHHHHHHH
Confidence 999999999999999999999999999854 477899999999999999999999999 67899999999899999999
Q ss_pred HhcCCcEEEEcCCc---------------------hhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEE
Q psy1959 204 RQKGAWAALTFTNE---------------------KSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTF 260 (296)
Q Consensus 204 ~~~g~~~~~~~~~~---------------------~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~ 260 (296)
+++|++.++++++. ..+.+.+.+.++++++|++|||+|...+..+++++ +.+|.+.
T Consensus 231 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~vld~~g~~~~~~~~~~l-~~~G~~v 307 (398)
T TIGR01751 231 RELGAEAVIDRNDFGHWGRLPDLNTQAPKEWTKSFKRFGKRIRELTGGEDPDIVFEHPGRATFPTSVFVC-RRGGMVV 307 (398)
T ss_pred HHcCCCEEecCCCcchhhccccccccccchhhhcchhHHHHHHHHcCCCCceEEEECCcHHHHHHHHHhh-ccCCEEE
Confidence 99999888876431 12445677777777899999999988889999999 7777663
No 94
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.96 E-value=1.3e-27 Score=219.23 Aligned_cols=215 Identities=24% Similarity=0.312 Sum_probs=180.3
Q ss_pred CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCC-CCC-CCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCC
Q psy1959 25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGS-GDA-KPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVG 102 (296)
Q Consensus 25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~-~~~-~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~G 102 (296)
.|.|.|.++ ||+||+.++++|+.|+..+.+. ... ...+|.++|+|++|+|+++ |+++.++++|
T Consensus 15 ~~~~~l~~~-----~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~v----------G~~v~~~~~G 79 (343)
T cd05285 15 RPIPEPGPG-----EVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAV----------GSGVTHLKVG 79 (343)
T ss_pred CCCCCCCCC-----eEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEee----------CCCCCCCCCC
Confidence 466667778 9999999999999999876432 111 1235778999999999999 9999999999
Q ss_pred CEEEEec------------------------C--CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHH
Q psy1959 103 DKVLALN------------------------K--ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRH 156 (296)
Q Consensus 103 d~V~~~~------------------------~--~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~ 156 (296)
|+|++.. . ...|+|++|++++.+.++++|+++++++++.+ .++++||+++ ..
T Consensus 80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~a~~~~-~~ 157 (343)
T cd05285 80 DRVAIEPGVPCRTCEFCKSGRYNLCPDMRFAATPPVDGTLCRYVNHPADFCHKLPDNVSLEEGALV-EPLSVGVHAC-RR 157 (343)
T ss_pred CEEEEccccCCCCChhHhCcCcccCcCccccccccCCCceeeeEEecHHHcEECcCCCCHHHhhhh-hHHHHHHHHH-Hh
Confidence 9998621 0 12489999999999999999999999999866 6889999997 88
Q ss_pred cCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCE-EEEEeCCcchHHHHHhcCCcEEEEcCCchh---HHHHHHHHhCCCc
Q psy1959 157 AKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAK-VIGVCNSEDKTDLIRQKGAWAALTFTNEKS---LVNKVLEVSGGKY 232 (296)
Q Consensus 157 ~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~-Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~i~~~~~~~g 232 (296)
+++++|++++|+|+ |++|++++|+| +.+|++ |+++++++++.+.++++|++.++++++ .+ +.+.+.+.+.+++
T Consensus 158 ~~~~~g~~vlI~g~-g~vG~~a~~la-k~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~-~~~~~~~~~~~~~~~~~~ 234 (343)
T cd05285 158 AGVRPGDTVLVFGA-GPIGLLTAAVA-KAFGATKVVVTDIDPSRLEFAKELGATHTVNVRT-EDTPESAEKIAELLGGKG 234 (343)
T ss_pred cCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCcEEEEECCCHHHHHHHHHcCCcEEecccc-ccchhHHHHHHHHhCCCC
Confidence 99999999999875 99999999999 568997 888988999999999999988888765 44 3677777777778
Q ss_pred ccEEEECCCCc-cHHHHHHHhhccCceEE
Q psy1959 233 ANVVFEAVGGE-DKTDLIRQKGAWAALTF 260 (296)
Q Consensus 233 ~d~vld~~g~~-~~~~~~~~lg~~~g~~~ 260 (296)
+|+++||+|+. .+..+++++ +.+|++.
T Consensus 235 ~d~vld~~g~~~~~~~~~~~l-~~~G~~v 262 (343)
T cd05285 235 PDVVIECTGAESCIQTAIYAT-RPGGTVV 262 (343)
T ss_pred CCEEEECCCCHHHHHHHHHHh-hcCCEEE
Confidence 99999999985 889999999 7777664
No 95
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=99.96 E-value=3e-27 Score=213.30 Aligned_cols=230 Identities=26% Similarity=0.393 Sum_probs=196.5
Q ss_pred CCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCEEEE
Q psy1959 28 LPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLA 107 (296)
Q Consensus 28 p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V~~ 107 (296)
|.+.++ +++||+.++++|+.|.....+.+..+..+|.++|||++|+|+.+ |+++..+++||+|++
T Consensus 23 ~~l~~~-----~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~v----------g~~~~~~~~Gd~V~~ 87 (325)
T TIGR02824 23 PVPKAG-----EVLIRVAAAGVNRPDLLQRAGKYPPPPGASDILGLEVAGEVVAV----------GEGVSRWKVGDRVCA 87 (325)
T ss_pred CCCCCC-----EEEEEEEEEecCHHHHHHhcCCCCCCCCCCCCccceeEEEEEEe----------CCCCCCCCCCCEEEE
Confidence 346677 99999999999999999888876544456789999999999999 999989999999999
Q ss_pred ecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCC
Q psy1959 108 LNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYK 187 (296)
Q Consensus 108 ~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g 187 (296)
+.. +|+|++|+.++...++++|+++++.++++++.++.+||.++.+...++++++++|+|++|++|+++++++ +..|
T Consensus 88 ~~~--~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~~~~g~~~~~~a-~~~g 164 (325)
T TIGR02824 88 LVA--GGGYAEYVAVPAGQVLPVPEGLSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLA-KAFG 164 (325)
T ss_pred ccC--CCcceeEEEecHHHcEeCCCCCCHHHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcCcchHHHHHHHHH-HHcC
Confidence 754 4899999999999999999999999999999999999999878899999999999999999999999999 6789
Q ss_pred CEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEEeec----
Q psy1959 188 AKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTFTNE---- 263 (296)
Q Consensus 188 ~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~~~~---- 263 (296)
++|+++.+++++.+.++++|.+..++... .++.+.++....++++|++++++|+..+..+++++ +.+|.+....
T Consensus 165 ~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~l-~~~g~~v~~g~~~~ 242 (325)
T TIGR02824 165 ARVFTTAGSDEKCAACEALGADIAINYRE-EDFVEVVKAETGGKGVDVILDIVGGSYLNRNIKAL-ALDGRIVQIGFQGG 242 (325)
T ss_pred CEEEEEeCCHHHHHHHHHcCCcEEEecCc-hhHHHHHHHHcCCCCeEEEEECCchHHHHHHHHhh-ccCcEEEEEecCCC
Confidence 99999999999999888889877776655 56777777777667899999999988888999999 7777664221
Q ss_pred -------ccceeeeeEEeccc
Q psy1959 264 -------KSLVNKVLEVSGGK 277 (296)
Q Consensus 264 -------~~~~~k~~~i~g~~ 277 (296)
..++.+++++.+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~ 263 (325)
T TIGR02824 243 RKAELDLGPLLAKRLTITGST 263 (325)
T ss_pred CcCCCChHHHHhcCCEEEEEe
Confidence 11236777777665
No 96
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=99.96 E-value=3.9e-27 Score=214.28 Aligned_cols=230 Identities=26% Similarity=0.400 Sum_probs=193.4
Q ss_pred cceEEecCCCC---C----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccC
Q psy1959 13 SDLLLYNGSGD---A----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADT 85 (296)
Q Consensus 13 ~~~~~~~~~~~---~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~ 85 (296)
|+++++..++. . .+.|.+.++ +|+|++.++++|++|+..+.|.......+|.++|||++|+|+++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~--- 72 (342)
T cd08266 1 MKAVVIRGHGGPEVLEYGDLPEPEPGPD-----EVLVRVKAAALNHLDLWVRRGMPGIKLPLPHILGSDGAGVVEAV--- 72 (342)
T ss_pred CeEEEEecCCCccceeEeecCCCCCCCC-----eEEEEEEeeecCHHHHHHhcCCCCCCCCCCeecccceEEEEEEe---
Confidence 46666653222 1 344556677 99999999999999999998866543456889999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEecC-------------------------CCCCcccceEeeeCCceEECCCCCCHHHHh
Q psy1959 86 KSSSTEEDDEEDVLQVGDKVLALNK-------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAA 140 (296)
Q Consensus 86 ~~~~~~~g~~v~~~~~Gd~V~~~~~-------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa 140 (296)
|+++..+++||+|++... +..|+|++|+.++.+.++++|+++++++++
T Consensus 73 -------G~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~a~ 145 (342)
T cd08266 73 -------GPGVTNVKPGQRVVIYPGISCGRCEYCLAGRENLCAQYGILGEHVDGGYAEYVAVPARNLLPIPDNLSFEEAA 145 (342)
T ss_pred -------CCCCCCCCCCCEEEEccccccccchhhccccccccccccccccccCcceeEEEEechHHceeCCCCCCHHHHH
Confidence 999989999999998621 124889999999999999999999999999
Q ss_pred hhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhH
Q psy1959 141 SLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSL 220 (296)
Q Consensus 141 ~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 220 (296)
.++.++.+||+++.+..+++++++++|+|+++++|+++++++ +..|++|+++++++++.+.+++.+.+..++..+ .+.
T Consensus 146 ~~~~~~~~a~~~l~~~~~~~~~~~vlI~g~~~~iG~~~~~~~-~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 223 (342)
T cd08266 146 AAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIA-KLFGATVIATAGSEDKLERAKELGADYVIDYRK-EDF 223 (342)
T ss_pred hhhhHHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHcCCCeEEecCC-hHH
Confidence 999999999999888899999999999999889999999999 678999999999999999998888777776655 566
Q ss_pred HHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEE
Q psy1959 221 VNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTF 260 (296)
Q Consensus 221 ~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~ 260 (296)
.+.+.+.+.++++|++++++|...+..+++++ +.+|.+.
T Consensus 224 ~~~~~~~~~~~~~d~~i~~~g~~~~~~~~~~l-~~~G~~v 262 (342)
T cd08266 224 VREVRELTGKRGVDVVVEHVGAATWEKSLKSL-ARGGRLV 262 (342)
T ss_pred HHHHHHHhCCCCCcEEEECCcHHHHHHHHHHh-hcCCEEE
Confidence 67777777667899999999998889999999 6667663
No 97
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=99.96 E-value=3e-27 Score=220.40 Aligned_cols=230 Identities=27% Similarity=0.285 Sum_probs=186.1
Q ss_pred CcceEEecCCCC---CCCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCC------CCCCCCCCcCCCceeEEEEEE
Q psy1959 12 SSDLLLYNGSGD---AKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSG------DAKPTLPLVPGFEFSGTVIEV 82 (296)
Q Consensus 12 ~~~~~~~~~~~~---~~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~------~~~~~~p~~~G~e~~G~V~~v 82 (296)
.+...+|..+.- ..|.|.+.++ +|+||+.++++|++|+..+.+.. +....+|.++|||++|+|+++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~p~~~~~-----ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~v 102 (384)
T cd08265 28 NLGSKVWRYPELRVEDVPVPNLKPD-----EILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKT 102 (384)
T ss_pred cceeEEEeCCCEEEEECCCCCCCCC-----EEEEEEEEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEEE
Confidence 344455554321 1677888888 99999999999999998886421 222456889999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCEEEEec-------------------------CCCCCcccceEeeeCCceEECCCC----
Q psy1959 83 ADTKSSSTEEDDEEDVLQVGDKVLALN-------------------------KELLHGFSDQCVVHTNDVFKIPEK---- 133 (296)
Q Consensus 83 ~~~~~~~~~~g~~v~~~~~Gd~V~~~~-------------------------~~~~g~~~~~~~v~~~~~~~iP~~---- 133 (296)
|+++..|++||+|++.. ....|+|++|+.++.+.++++|++
T Consensus 103 ----------G~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~g~~~~~v~v~~~~~~~lP~~~~~~ 172 (384)
T cd08265 103 ----------GKNVKNFEKGDPVTAEEMMWCGMCRACRSGSPNHCKNLKELGFSADGAFAEYIAVNARYAWEINELREIY 172 (384)
T ss_pred ----------CCCCCCCCCCCEEEECCCCCCCCChhhhCcCcccCCCcceeeecCCCcceeeEEechHHeEECCcccccc
Confidence 99998999999998611 011489999999999999999986
Q ss_pred ---CCHHHHhhhccHHHHHHHHHHHH-cCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCC
Q psy1959 134 ---MTFEHAASLADSYSTAQIVFSRH-AKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGA 208 (296)
Q Consensus 134 ---~~~~~aa~l~~~~~ta~~~l~~~-~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~ 208 (296)
++.+ +|+++.++++||+++... .++++|++|+|+|+ |++|++++++| +..|+ +|+++++++++.+.++++|+
T Consensus 173 ~~~~~~~-~a~~~~~~~ta~~al~~~~~~~~~g~~VlV~g~-g~vG~~ai~lA-~~~G~~~vi~~~~~~~~~~~~~~~g~ 249 (384)
T cd08265 173 SEDKAFE-AGALVEPTSVAYNGLFIRGGGFRPGAYVVVYGA-GPIGLAAIALA-KAAGASKVIAFEISEERRNLAKEMGA 249 (384)
T ss_pred ccCCCHH-HhhhhhHHHHHHHHHHhhcCCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCEEEEEcCCHHHHHHHHHcCC
Confidence 4555 556778999999998666 78999999999975 99999999999 67899 79999988889999999999
Q ss_pred cEEEEcCCc--hhHHHHHHHHhCCCcccEEEECCCCc--cHHHHHHHhhccCceEE
Q psy1959 209 WAALTFTNE--KSLVNKVLEVSGGKYANVVFEAVGGE--DKTDLIRQKGAWAALTF 260 (296)
Q Consensus 209 ~~~~~~~~~--~~~~~~i~~~~~~~g~d~vld~~g~~--~~~~~~~~lg~~~g~~~ 260 (296)
+.++++++. .++.+.+++.+.++++|+++|+.|+. .+..+++++ +.+|++.
T Consensus 250 ~~~v~~~~~~~~~~~~~v~~~~~g~gvDvvld~~g~~~~~~~~~~~~l-~~~G~~v 304 (384)
T cd08265 250 DYVFNPTKMRDCLSGEKVMEVTKGWGADIQVEAAGAPPATIPQMEKSI-AINGKIV 304 (384)
T ss_pred CEEEcccccccccHHHHHHHhcCCCCCCEEEECCCCcHHHHHHHHHHH-HcCCEEE
Confidence 888877531 26777888888888999999999973 778999999 7777764
No 98
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.96 E-value=3e-27 Score=215.56 Aligned_cols=223 Identities=28% Similarity=0.387 Sum_probs=187.0
Q ss_pred cceEEecCCCCC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCC
Q psy1959 13 SDLLLYNGSGDA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSS 88 (296)
Q Consensus 13 ~~~~~~~~~~~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~ 88 (296)
|+++++.++++. .|.|.+.++ ||+||+.++++|+.|.....|.++. .+|.++|+|++|+|+++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~l~~~-----~v~v~v~~~~l~~~d~~~~~g~~~~--~~p~~~g~~~~G~v~~v------ 67 (334)
T cd08234 1 MKALVYEGPGELEVEEVPVPEPGPD-----EVLIKVAACGICGTDLHIYEGEFGA--APPLVPGHEFAGVVVAV------ 67 (334)
T ss_pred CeeEEecCCCceEEEeccCCCCCCC-----eEEEEEEEEeEchhhhHHhcCCCCC--CCCcccccceEEEEEEe------
Confidence 567777766655 577778888 9999999999999999999887653 36889999999999999
Q ss_pred CCCCCCCCCCCCCCCEEEEec-------------------------CCCCCcccceEeeeCCceEECCCCCCHHHHhhhc
Q psy1959 89 STEEDDEEDVLQVGDKVLALN-------------------------KELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLA 143 (296)
Q Consensus 89 ~~~~g~~v~~~~~Gd~V~~~~-------------------------~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~ 143 (296)
|+++..+++||+|++.. ....|+|++|+.++.+.++++|++++..+++.+
T Consensus 68 ----G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~- 142 (334)
T cd08234 68 ----GSKVTGFKVGDRVAVDPNIYCGECFYCRRGRPNLCENLTAVGVTRNGGFAEYVVVPAKQVYKIPDNLSFEEAALA- 142 (334)
T ss_pred ----CCCCCCCCCCCEEEEcCCcCCCCCccccCcChhhCCCcceeccCCCCcceeEEEecHHHcEECcCCCCHHHHhhh-
Confidence 99999999999998711 012489999999999999999999999998765
Q ss_pred cHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCE-EEEEeCCcchHHHHHhcCCcEEEEcCCchhHHH
Q psy1959 144 DSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAK-VIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVN 222 (296)
Q Consensus 144 ~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~-Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 222 (296)
.++.++++++ ..++++++++++|+|+ |.+|++++++| +..|++ |+++++++++.+.++++|++..+++.+ .+...
T Consensus 143 ~~~~~a~~~l-~~~~~~~g~~vlI~g~-g~vg~~~~~la-~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~ 218 (334)
T cd08234 143 EPLSCAVHGL-DLLGIKPGDSVLVFGA-GPIGLLLAQLL-KLNGASRVTVAEPNEEKLELAKKLGATETVDPSR-EDPEA 218 (334)
T ss_pred hHHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCC-CCHHH
Confidence 7888999998 7889999999999985 99999999999 678997 888998999999999999887777655 34433
Q ss_pred HHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE
Q psy1959 223 KVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF 260 (296)
Q Consensus 223 ~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~ 260 (296)
. ..+.++++|+++|++|. ..+..+++++ +.+|.+.
T Consensus 219 ~--~~~~~~~vd~v~~~~~~~~~~~~~~~~l-~~~G~~v 254 (334)
T cd08234 219 Q--KEDNPYGFDVVIEATGVPKTLEQAIEYA-RRGGTVL 254 (334)
T ss_pred H--HHhcCCCCcEEEECCCChHHHHHHHHHH-hcCCEEE
Confidence 3 34556789999999986 6888999999 7777664
No 99
>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.96 E-value=4.8e-27 Score=212.55 Aligned_cols=228 Identities=24% Similarity=0.369 Sum_probs=195.3
Q ss_pred cceEEecCCC---CC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccC
Q psy1959 13 SDLLLYNGSG---DA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADT 85 (296)
Q Consensus 13 ~~~~~~~~~~---~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~ 85 (296)
||++++.+++ +. .|.|++.++ +|+||+.++++|++|+....+.... ..+|.++|||++|+|+.+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~g~e~~G~v~~~--- 71 (325)
T cd08271 1 MKAWVLPKPGAALQLTLEEIEIPGPGAG-----EVLVKVHAAGLNPVDWKVIAWGPPA-WSYPHVPGVDGAGVVVAV--- 71 (325)
T ss_pred CeeEEEccCCCcceeEEeccCCCCCCCC-----EEEEEEEEEecCHHHHHHhcCCCCC-CCCCcccccceEEEEEEe---
Confidence 6888898888 33 567777788 9999999999999999988775532 234778999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEecCC-CCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcE
Q psy1959 86 KSSSTEEDDEEDVLQVGDKVLALNKE-LLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQT 164 (296)
Q Consensus 86 ~~~~~~~g~~v~~~~~Gd~V~~~~~~-~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~ 164 (296)
|+++..+++||+|++.... ..|+|++|+.++.+.++++|++++..+++.+..++.+||.++.+.+++++|++
T Consensus 72 -------G~~~~~~~~Gd~V~~~~~~~~~~~~~s~~~~~~~~~~~ip~~~~~~~~a~~~~~~~~a~~~~~~~~~~~~g~~ 144 (325)
T cd08271 72 -------GAKVTGWKVGDRVAYHASLARGGSFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAYQALFKKLRIEAGRT 144 (325)
T ss_pred -------CCCCCcCCCCCEEEeccCCCCCccceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHHHHhcCCCCCCE
Confidence 9999999999999987510 13889999999999999999999999999999999999999988899999999
Q ss_pred EEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCcc
Q psy1959 165 VLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGED 244 (296)
Q Consensus 165 vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~ 244 (296)
++|+|++|++|+++++++ +..|++|+++. ++++.+.+.+.|++.+++... .++.+.+.+...++++|++++++++..
T Consensus 145 vlI~g~~~~ig~~~~~~a-~~~g~~v~~~~-~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~d~vi~~~~~~~ 221 (325)
T cd08271 145 ILITGGAGGVGSFAVQLA-KRAGLRVITTC-SKRNFEYVKSLGADHVIDYND-EDVCERIKEITGGRGVDAVLDTVGGET 221 (325)
T ss_pred EEEECCccHHHHHHHHHH-HHcCCEEEEEE-cHHHHHHHHHcCCcEEecCCC-ccHHHHHHHHcCCCCCcEEEECCCcHh
Confidence 999999899999999999 67899998887 677888888899887777665 566677777777778999999999977
Q ss_pred HHHHHHHhhccCceEE
Q psy1959 245 KTDLIRQKGAWAALTF 260 (296)
Q Consensus 245 ~~~~~~~lg~~~g~~~ 260 (296)
...+++++ +..|++.
T Consensus 222 ~~~~~~~l-~~~G~~v 236 (325)
T cd08271 222 AAALAPTL-AFNGHLV 236 (325)
T ss_pred HHHHHHhh-ccCCEEE
Confidence 77899999 7766664
No 100
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=99.96 E-value=7.1e-27 Score=210.02 Aligned_cols=212 Identities=28% Similarity=0.386 Sum_probs=188.3
Q ss_pred CCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCEEE
Q psy1959 27 TLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVL 106 (296)
Q Consensus 27 ~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V~ 106 (296)
.|.+.++ +++||+.++++|+.|+....+.++. .+|.++|||++|+|+.+ |+++.++++||+|+
T Consensus 21 ~~~~~~~-----~v~i~v~~~~i~~~d~~~~~~~~~~--~~~~~~g~e~~G~v~~~----------g~~~~~~~~G~~V~ 83 (320)
T cd05286 21 VPEPGPG-----EVLVRNTAIGVNFIDTYFRSGLYPL--PLPFVLGVEGAGVVEAV----------GPGVTGFKVGDRVA 83 (320)
T ss_pred CCCCCCC-----EEEEEEEEeecCHHHHHHhcCCCCC--CCCccCCcceeEEEEEE----------CCCCCCCCCCCEEE
Confidence 3456677 9999999999999999998876542 45778999999999999 99999999999999
Q ss_pred EecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhC
Q psy1959 107 ALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIY 186 (296)
Q Consensus 107 ~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~ 186 (296)
++.. .|+|++|+.++.+.++++|++++..+++.++..+.++|.++.+..++++|++++|+|++|++|++++++| +.+
T Consensus 84 ~~~~--~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g~~g~~~~~~a-~~~ 160 (320)
T cd05286 84 YAGP--PGAYAEYRVVPASRLVKLPDGISDETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWA-KAL 160 (320)
T ss_pred EecC--CCceeEEEEecHHHceeCCCCCCHHHHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHH-HHc
Confidence 9861 3899999999999999999999999999999999999999988899999999999998899999999999 678
Q ss_pred CCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEE
Q psy1959 187 KAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTF 260 (296)
Q Consensus 187 g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~ 260 (296)
|++|+++++++++.+.++++|++.+++..+ .++.+.+.+.+.++++|++++|+++.....+++++ +.+|.+.
T Consensus 161 g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~d~vl~~~~~~~~~~~~~~l-~~~g~~v 232 (320)
T cd05286 161 GATVIGTVSSEEKAELARAAGADHVINYRD-EDFVERVREITGGRGVDVVYDGVGKDTFEGSLDSL-RPRGTLV 232 (320)
T ss_pred CCEEEEEcCCHHHHHHHHHCCCCEEEeCCc-hhHHHHHHHHcCCCCeeEEEECCCcHhHHHHHHhh-ccCcEEE
Confidence 999999999999999999999888777765 66777788887777899999999998889999999 7777664
No 101
>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast. This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi
Probab=99.96 E-value=6.7e-27 Score=215.22 Aligned_cols=212 Identities=24% Similarity=0.317 Sum_probs=172.6
Q ss_pred CCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCC-CCCCCCEEEEec
Q psy1959 31 VPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEED-VLQVGDKVLALN 109 (296)
Q Consensus 31 ~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~-~~~~Gd~V~~~~ 109 (296)
.++ +|+||+.++++|++|+....+........|.++|+|++|+|+++ |+++. .|++||+|+++.
T Consensus 27 ~~~-----~v~I~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~v----------G~~v~~~~~~Gd~V~~~~ 91 (352)
T cd08247 27 KDN-----EIVVKVHAAALNPVDLKLYNSYTFHFKVKEKGLGRDYSGVIVKV----------GSNVASEWKVGDEVCGIY 91 (352)
T ss_pred CCC-----eEEEEEEEEecChHhHHHhcccccccccCCCccCceeEEEEEEe----------CcccccCCCCCCEEEEee
Confidence 667 99999999999999998876433221223778999999999999 99998 899999999875
Q ss_pred CCC---CCcccceEeeeCC----ceEECCCCCCHHHHhhhccHHHHHHHHHHHHc-CCCCCcEEEEEcCCCcHHHHHHHH
Q psy1959 110 KEL---LHGFSDQCVVHTN----DVFKIPEKMTFEHAASLADSYSTAQIVFSRHA-KLKEKQTVLVTAAGGGLGLAAVDM 181 (296)
Q Consensus 110 ~~~---~g~~~~~~~v~~~----~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~-~~~~g~~vlI~Ga~g~vG~aa~~l 181 (296)
.+. .|+|++|++++.. .++++|+++++.+++.++.++.+||+++.... ++++|++++|+|+++++|++++++
T Consensus 92 ~~~~~~~g~~~~~~~v~~~~~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~g~~vlI~ga~~~vg~~~~~~ 171 (352)
T cd08247 92 PHPYGGQGTLSQYLLVDPKKDKKSITRKPENISLEEAAAWPLVLGTAYQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQL 171 (352)
T ss_pred cCCCCCCceeeEEEEEccccccceeEECCCCCCHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEECCCchHHHHHHHH
Confidence 221 4899999999987 78999999999999999999999999997777 799999999999999999999999
Q ss_pred HHHhCCC-EEEEEeCCcchHHHHHhcCCcEEEEcCCchh---HHHHHHHH-hCCCcccEEEECCCC-ccHHHHHHHhhc-
Q psy1959 182 ATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALTFTNEKS---LVNKVLEV-SGGKYANVVFEAVGG-EDKTDLIRQKGA- 254 (296)
Q Consensus 182 a~~~~g~-~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~i~~~-~~~~g~d~vld~~g~-~~~~~~~~~lg~- 254 (296)
|+...+. .++++. ++++.+.++++|++.+++.++ .+ +...+.+. ++++++|++|||+|+ .....+++++ +
T Consensus 172 a~~~~~~~~v~~~~-~~~~~~~~~~~g~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~d~vl~~~g~~~~~~~~~~~l-~~ 248 (352)
T cd08247 172 AKNHYNIGTVVGTC-SSRSAELNKKLGADHFIDYDA-HSGVKLLKPVLENVKGQGKFDLILDCVGGYDLFPHINSIL-KP 248 (352)
T ss_pred HHhcCCcceEEEEe-ChhHHHHHHHhCCCEEEecCC-CcccchHHHHHHhhcCCCCceEEEECCCCHHHHHHHHHHh-Cc
Confidence 9433355 566665 556667888899988887765 33 33444444 336789999999999 6888899999 7
Q ss_pred --cCceEE
Q psy1959 255 --WAALTF 260 (296)
Q Consensus 255 --~~g~~~ 260 (296)
.+|++.
T Consensus 249 ~~~~G~~v 256 (352)
T cd08247 249 KSKNGHYV 256 (352)
T ss_pred cCCCCEEE
Confidence 777664
No 102
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.96 E-value=8.9e-27 Score=210.52 Aligned_cols=217 Identities=29% Similarity=0.399 Sum_probs=189.6
Q ss_pred CCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCEE
Q psy1959 26 PTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKV 105 (296)
Q Consensus 26 ~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V 105 (296)
+.|.+.++ +++|++.++++|+.|.....|.+.....+|.++|||++|+|+.+ |+++.++++||+|
T Consensus 21 ~~~~~~~~-----~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~----------G~~~~~~~~Gd~V 85 (328)
T cd08268 21 PVPAPGAG-----EVLIRVEAIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAV----------GAGVTGFAVGDRV 85 (328)
T ss_pred CCCCCCCC-----eEEEEEEEEecChHHhheeccccCCCCCCCCCCCcceEEEEEee----------CCCCCcCCCCCEE
Confidence 44556777 99999999999999999887766544556889999999999999 9999899999999
Q ss_pred EEecC---CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHH
Q psy1959 106 LALNK---ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMA 182 (296)
Q Consensus 106 ~~~~~---~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la 182 (296)
+++.. ...|++++|+.++.+.++++|+++++++++.++.++.+||.++.....+.++++++|+|++|++|+++++++
T Consensus 86 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~~ 165 (328)
T cd08268 86 SVIPAADLGQYGTYAEYALVPAAAVVKLPDGLSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIA 165 (328)
T ss_pred EeccccccCCCccceEEEEechHhcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHH
Confidence 98742 124889999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred HHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEE
Q psy1959 183 TKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTF 260 (296)
Q Consensus 183 ~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~ 260 (296)
+..|++++++++++++.+.++++|.+.+++.+. .+..+.+.+...++++|+++++.|+.....+++++ +.+|.+.
T Consensus 166 -~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l-~~~g~~v 240 (328)
T cd08268 166 -NAAGATVIATTRTSEKRDALLALGAAHVIVTDE-EDLVAEVLRITGGKGVDVVFDPVGGPQFAKLADAL-APGGTLV 240 (328)
T ss_pred -HHcCCEEEEEcCCHHHHHHHHHcCCCEEEecCC-ccHHHHHHHHhCCCCceEEEECCchHhHHHHHHhh-ccCCEEE
Confidence 678999999999999999998889877777765 56667777777667899999999998888999999 7777664
No 103
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.96 E-value=5.1e-27 Score=211.16 Aligned_cols=201 Identities=24% Similarity=0.330 Sum_probs=172.7
Q ss_pred CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCE
Q psy1959 25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDK 104 (296)
Q Consensus 25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~ 104 (296)
.|.|.+.++ ||+||+.++++|+.|.....+. ..|.++|+|++|+|+++ |+++..|++||+
T Consensus 19 ~~~p~~~~~-----ev~v~v~~~~i~~~d~~~~~~~-----~~~~~~g~e~~G~v~~~----------G~~v~~~~~Gd~ 78 (305)
T cd08270 19 VPDPQPAPH-----EALVRVAAISLNRGELKFAAER-----PDGAVPGWDAAGVVERA----------AADGSGPAVGAR 78 (305)
T ss_pred cCCCCCCCC-----EEEEEEEEEecCHHHHHhhccC-----CCCCcccceeEEEEEEe----------CCCCCCCCCCCE
Confidence 456667778 9999999999999999877621 23678999999999999 999999999999
Q ss_pred EEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHH
Q psy1959 105 VLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATK 184 (296)
Q Consensus 105 V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~ 184 (296)
|+++.. .|+|++|++++.+.++++|++++++++++++..+.+||+++.+.... +|++++|+|++|++|++++++| +
T Consensus 79 V~~~~~--~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~~~~~~~~-~~~~vli~g~~~~~g~~~~~~a-~ 154 (305)
T cd08270 79 VVGLGA--MGAWAELVAVPTGWLAVLPDGVSFAQAATLPVAGVTALRALRRGGPL-LGRRVLVTGASGGVGRFAVQLA-A 154 (305)
T ss_pred EEEecC--CcceeeEEEEchHHeEECCCCCCHHHHHHhHhHHHHHHHHHHHhCCC-CCCEEEEECCCcHHHHHHHHHH-H
Confidence 999863 48999999999999999999999999999999999999999766655 5999999999999999999999 6
Q ss_pred hCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEE
Q psy1959 185 IYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTF 260 (296)
Q Consensus 185 ~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~ 260 (296)
..|++|+.+++++++.+.++++|++..+.... + .. +.++|+++|++|+..+..+++++ +.+|++.
T Consensus 155 ~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~-------~~-~~~~d~vl~~~g~~~~~~~~~~l-~~~G~~v 219 (305)
T cd08270 155 LAGAHVVAVVGSPARAEGLRELGAAEVVVGGS--E-------LS-GAPVDLVVDSVGGPQLARALELL-APGGTVV 219 (305)
T ss_pred HcCCEEEEEeCCHHHHHHHHHcCCcEEEeccc--c-------cc-CCCceEEEECCCcHHHHHHHHHh-cCCCEEE
Confidence 78999999999999999999999875543322 1 12 24799999999998899999999 7777664
No 104
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=99.96 E-value=3.5e-27 Score=214.09 Aligned_cols=227 Identities=22% Similarity=0.291 Sum_probs=185.1
Q ss_pred cceEEecCCCCC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCC
Q psy1959 13 SDLLLYNGSGDA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSS 88 (296)
Q Consensus 13 ~~~~~~~~~~~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~ 88 (296)
|+++++.++++. .|.|+++++ ||+||+.++++|++|.....|.++ +|.++|||++|+|+++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~p~~~~~-----~vlV~v~a~~i~~~d~~~~~g~~~----~~~~~G~e~~G~Vv~~------ 65 (319)
T cd08242 1 MKALVLDGGLDLRVEDLPKPEPPPG-----EALVRVLLAGICNTDLEIYKGYYP----FPGVPGHEFVGIVEEG------ 65 (319)
T ss_pred CeeEEEeCCCcEEEEECCCCCCCCC-----eEEEEEEEEEEccccHHHHcCCCC----CCCccCceEEEEEEEe------
Confidence 567777766554 678888889 999999999999999999988653 4789999999999999
Q ss_pred CCCCCCCCCCCCCCCEEEEecC--------------------------CCCCcccceEeeeCCceEECCCCCCHHHHhhh
Q psy1959 89 STEEDDEEDVLQVGDKVLALNK--------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASL 142 (296)
Q Consensus 89 ~~~~g~~v~~~~~Gd~V~~~~~--------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l 142 (296)
|++ +++||+|..... ...|+|++|++++.+.++++|++++.++++.+
T Consensus 66 ----G~~---~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~ 138 (319)
T cd08242 66 ----PEA---ELVGKRVVGEINIACGRCEYCRRGLYTHCPNRTVLGIVDRDGAFAEYLTLPLENLHVVPDLVPDEQAVFA 138 (319)
T ss_pred ----CCC---CCCCCeEEECCCcCCCCChhhhCcCcccCCCCcccCccCCCCceEEEEEechHHeEECcCCCCHHHhhhh
Confidence 876 679999973210 12589999999999999999999999888754
Q ss_pred ccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHH
Q psy1959 143 ADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVN 222 (296)
Q Consensus 143 ~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 222 (296)
.++.++|.++ +..+++++++|+|+| +|++|++++|+| +.+|++|++++.++++.+.++++|++..++++. .
T Consensus 139 -~~~~~~~~~~-~~~~~~~g~~vlV~g-~g~vg~~~~q~a-~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~-~---- 209 (319)
T cd08242 139 -EPLAAALEIL-EQVPITPGDKVAVLG-DGKLGLLIAQVL-ALTGPDVVLVGRHSEKLALARRLGVETVLPDEA-E---- 209 (319)
T ss_pred -hHHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHH-HHcCCeEEEEcCCHHHHHHHHHcCCcEEeCccc-c----
Confidence 5666777766 788999999999998 599999999999 678999999999999999999999987776643 1
Q ss_pred HHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEe----------ecccceeeeeEEecc
Q psy1959 223 KVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFT----------NEKSLVNKVLEVSGG 276 (296)
Q Consensus 223 ~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~----------~~~~~~~k~~~i~g~ 276 (296)
+.+.++|+++|++|+ ..+..+++++ +.+|.+.. +...+..+++++.++
T Consensus 210 -----~~~~~~d~vid~~g~~~~~~~~~~~l-~~~g~~v~~~~~~~~~~~~~~~~~~~~~~i~~~ 268 (319)
T cd08242 210 -----SEGGGFDVVVEATGSPSGLELALRLV-RPRGTVVLKSTYAGPASFDLTKAVVNEITLVGS 268 (319)
T ss_pred -----ccCCCCCEEEECCCChHHHHHHHHHh-hcCCEEEEEcccCCCCccCHHHheecceEEEEE
Confidence 345689999999998 6788999999 66666632 223456677777765
No 105
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.96 E-value=4.7e-27 Score=211.94 Aligned_cols=211 Identities=26% Similarity=0.300 Sum_probs=179.7
Q ss_pred CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHH-cCCCCCC-CCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCC
Q psy1959 25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLY-NGSGDAK-PTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVG 102 (296)
Q Consensus 25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~-~g~~~~~-~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~G 102 (296)
++.|++.++ ||+||+.++++|+.|+..+ .|..... +..|.++|+|++|+|+++ |+++..+++|
T Consensus 12 ~~~~~l~~~-----ev~v~v~~~~i~~~d~~~~~~g~~~~~~~~~~~~~g~e~~G~V~~v----------G~~v~~~~~G 76 (312)
T cd08269 12 HPRPTPGPG-----QVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVAL----------GPGVRGLAVG 76 (312)
T ss_pred CCCCCCCCC-----eEEEEEEEeeecccchHHHccCCCCcccCCCCcccceeeEEEEEEE----------CCCCcCCCCC
Confidence 567778888 9999999999999999887 6654321 234789999999999999 9999999999
Q ss_pred CEEEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHH
Q psy1959 103 DKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMA 182 (296)
Q Consensus 103 d~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la 182 (296)
|+|+++.. |+|++|+.++.+.++++|+++ ..++.+..++.++|+++. ..+++++++++|+| +|++|++++++|
T Consensus 77 d~V~~~~~---g~~~~~~~v~~~~~~~lP~~~--~~~~~~~~~~~~a~~~~~-~~~~~~~~~vlI~g-~g~vg~~~~~la 149 (312)
T cd08269 77 DRVAGLSG---GAFAEYDLADADHAVPLPSLL--DGQAFPGEPLGCALNVFR-RGWIRAGKTVAVIG-AGFIGLLFLQLA 149 (312)
T ss_pred CEEEEecC---CcceeeEEEchhheEECCCch--hhhHHhhhhHHHHHHHHH-hcCCCCCCEEEEEC-CCHHHHHHHHHH
Confidence 99999865 899999999999999999998 233322378899999985 88999999999997 599999999999
Q ss_pred HHhCCCE-EEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE
Q psy1959 183 TKIYKAK-VIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF 260 (296)
Q Consensus 183 ~~~~g~~-Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~ 260 (296)
+..|++ |+++.+++++.+.++++|++.+++.+. .++.+.+.+.+.++++|+++||+|+ ..+..+++++ +.+|.+.
T Consensus 150 -~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l-~~~g~~~ 226 (312)
T cd08269 150 -AAAGARRVIAIDRRPARLALARELGATEVVTDDS-EAIVERVRELTGGAGADVVIEAVGHQWPLDLAGELV-AERGRLV 226 (312)
T ss_pred -HHcCCcEEEEECCCHHHHHHHHHhCCceEecCCC-cCHHHHHHHHcCCCCCCEEEECCCCHHHHHHHHHHh-ccCCEEE
Confidence 668998 999999988999889999977777655 6777888888877899999999987 5789999999 7766664
No 106
>PLN02702 L-idonate 5-dehydrogenase
Probab=99.96 E-value=7.2e-27 Score=216.16 Aligned_cols=245 Identities=22% Similarity=0.260 Sum_probs=190.2
Q ss_pred cceEEecCCCCC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCC--CCCCCCcCCCceeEEEEEEccCC
Q psy1959 13 SDLLLYNGSGDA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDA--KPTLPLVPGFEFSGTVIEVADTK 86 (296)
Q Consensus 13 ~~~~~~~~~~~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~--~~~~p~~~G~e~~G~V~~v~~~~ 86 (296)
++++++..++.. .|.|.|.++ ||+||+.++++|++|+..+.+.... ...+|.++|||++|+|+++
T Consensus 18 ~~~~~~~~~~~l~~~~~~~p~~~~~-----ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~v---- 88 (364)
T PLN02702 18 NMAAWLVGVNTLKIQPFKLPPLGPH-----DVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEV---- 88 (364)
T ss_pred cceEEEecCCceEEEeccCCCCCCC-----eEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEE----
Confidence 455666655554 455667778 9999999999999999988763211 1235789999999999999
Q ss_pred CCCCCCCCCCCCCCCCCEEEEec--------------------------CCCCCcccceEeeeCCceEECCCCCCHHHHh
Q psy1959 87 SSSTEEDDEEDVLQVGDKVLALN--------------------------KELLHGFSDQCVVHTNDVFKIPEKMTFEHAA 140 (296)
Q Consensus 87 ~~~~~~g~~v~~~~~Gd~V~~~~--------------------------~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa 140 (296)
|+++.+|++||+|++.. ....|+|++|+.++...++++|+++++++++
T Consensus 89 ------G~~v~~~~~Gd~V~~~~~~~~~~c~~c~~g~~~~c~~~~~~~~~~~~g~~~~y~~v~~~~~~~~P~~l~~~~aa 162 (364)
T PLN02702 89 ------GSEVKHLVVGDRVALEPGISCWRCNLCKEGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPENVSLEEGA 162 (364)
T ss_pred ------CCCCCCCCCCCEEEEcCCCCCCCCcchhCcCcccCCCccccCCCCCCCcccceEEcchHHeEECCCCCCHHHHh
Confidence 99998999999998621 0114899999999999999999999999887
Q ss_pred hhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCE-EEEEeCCcchHHHHHhcCCcEEEEcCC-ch
Q psy1959 141 SLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAK-VIGVCNSEDKTDLIRQKGAWAALTFTN-EK 218 (296)
Q Consensus 141 ~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~-Vi~~~~~~~~~~~~~~~g~~~~~~~~~-~~ 218 (296)
. ..++.++|+++ +..++.++++++|+|+ |++|++++++| +..|++ ++++++++++.+.++++|++..+++.. ..
T Consensus 163 ~-~~~~~~a~~~~-~~~~~~~g~~vlI~g~-g~vG~~~~~~a-~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 238 (364)
T PLN02702 163 M-CEPLSVGVHAC-RRANIGPETNVLVMGA-GPIGLVTMLAA-RAFGAPRIVIVDVDDERLSVAKQLGADEIVLVSTNIE 238 (364)
T ss_pred h-hhHHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCEEEEECCCHHHHHHHHHhCCCEEEecCcccc
Confidence 4 34666788888 7889999999999975 99999999999 568985 777888888999999999988776532 14
Q ss_pred hHHHHHHHH--hCCCcccEEEECCCC-ccHHHHHHHhhccCceEEe----------ecccceeeeeEEeccc
Q psy1959 219 SLVNKVLEV--SGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFT----------NEKSLVNKVLEVSGGK 277 (296)
Q Consensus 219 ~~~~~i~~~--~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~----------~~~~~~~k~~~i~g~~ 277 (296)
++.+.+.+. ..+.++|++||++|+ ..+..+++++ +.+|++.. ....+..+++++.+++
T Consensus 239 ~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l-~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~ 309 (364)
T PLN02702 239 DVESEVEEIQKAMGGGIDVSFDCVGFNKTMSTALEAT-RAGGKVCLVGMGHNEMTVPLTPAAAREVDVVGVF 309 (364)
T ss_pred cHHHHHHHHhhhcCCCCCEEEECCCCHHHHHHHHHHH-hcCCEEEEEccCCCCCcccHHHHHhCccEEEEec
Confidence 566665544 234579999999996 7899999999 77776642 1224556777777754
No 107
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.96 E-value=8.7e-27 Score=212.02 Aligned_cols=211 Identities=25% Similarity=0.386 Sum_probs=181.0
Q ss_pred CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCE
Q psy1959 25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDK 104 (296)
Q Consensus 25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~ 104 (296)
.+.|.|.++ ||+|++.++++|+.|+....|.+.....+|.++|+|++|+|+.+ |+++..+++||+
T Consensus 20 ~~~~~~~~~-----~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~v----------G~~v~~~~~Gd~ 84 (331)
T cd08273 20 ADLPEPAAG-----EVVVKVEASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGRVDAL----------GSGVTGFEVGDR 84 (331)
T ss_pred cCCCCCCCC-----eEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceEEEEEEe----------CCCCccCCCCCE
Confidence 466777788 99999999999999999998876544457889999999999999 999999999999
Q ss_pred EEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHH
Q psy1959 105 VLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATK 184 (296)
Q Consensus 105 V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~ 184 (296)
|++... .|+|++|+.++.+.++++|+++++.+++.++.++.+||+++.+..++++|++++|+|++|++|++++++| +
T Consensus 85 V~~~~~--~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~~a-~ 161 (331)
T cd08273 85 VAALTR--VGGNAEYINLDAKYLVPVPEGVDAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELA-L 161 (331)
T ss_pred EEEeCC--CcceeeEEEechHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHH-H
Confidence 999864 4899999999999999999999999999999999999999988889999999999999999999999999 6
Q ss_pred hCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEE
Q psy1959 185 IYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTF 260 (296)
Q Consensus 185 ~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~ 260 (296)
..|++|++++. +++.+.++++|+.. +.... .++.+. ... ++++|++++++|+.....+++++ ..+|++.
T Consensus 162 ~~g~~v~~~~~-~~~~~~~~~~g~~~-~~~~~-~~~~~~--~~~-~~~~d~vl~~~~~~~~~~~~~~l-~~~g~~v 230 (331)
T cd08273 162 LAGAEVYGTAS-ERNHAALRELGATP-IDYRT-KDWLPA--MLT-PGGVDVVFDGVGGESYEESYAAL-APGGTLV 230 (331)
T ss_pred HcCCEEEEEeC-HHHHHHHHHcCCeE-EcCCC-cchhhh--hcc-CCCceEEEECCchHHHHHHHHHh-cCCCEEE
Confidence 78999999997 88888988888643 44433 333332 233 35899999999997799999999 7777664
No 108
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=99.96 E-value=2.3e-27 Score=205.58 Aligned_cols=228 Identities=20% Similarity=0.250 Sum_probs=188.1
Q ss_pred CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCC--CCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCC
Q psy1959 25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTL--PLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVG 102 (296)
Q Consensus 25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~--p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~G 102 (296)
.+.|.|+.+ |||+|..|.+++|. .+|.+...++| |+-+|...+|.++.. . .-+..++|++|
T Consensus 32 ~~vp~p~~G-----qvLl~~~ylS~DPy----mRgrm~d~~SY~~P~~lG~~~~gg~V~~--V------v~S~~~~f~~G 94 (340)
T COG2130 32 VDVPEPGEG-----QVLLRTLYLSLDPY----MRGRMSDAPSYAPPVELGEVMVGGTVAK--V------VASNHPGFQPG 94 (340)
T ss_pred ccCCCCCcC-----ceEEEEEEeccCHH----HeecccCCcccCCCcCCCceeECCeeEE--E------EecCCCCCCCC
Confidence 677888888 99999999999983 44554444443 788888887644433 0 13457789999
Q ss_pred CEEEEecCCCCCcccceEeeeCCceEECCCCCC--HHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHH
Q psy1959 103 DKVLALNKELLHGFSDQCVVHTNDVFKIPEKMT--FEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVD 180 (296)
Q Consensus 103 d~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~--~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~ 180 (296)
|.|.... +|+||..++.+.+.|++...- ......|.++..|||.+|.+++++++|++|+|.+|+|++|..+.|
T Consensus 95 D~V~~~~-----GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLGmpG~TAY~gLl~igqpk~GetvvVSaAaGaVGsvvgQ 169 (340)
T COG2130 95 DIVVGVS-----GWQEYAISDGEGLRKLDPSPAPLSAYLGVLGMPGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQ 169 (340)
T ss_pred CEEEecc-----cceEEEeechhhceecCCCCCCcchHHhhcCCchHHHHHHHHHhcCCCCCCEEEEEecccccchHHHH
Confidence 9999874 599999999999999975432 122346889999999999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEEeCCcchHHHHHh-cCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceE
Q psy1959 181 MATKIYKAKVIGVCNSEDKTDLIRQ-KGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALT 259 (296)
Q Consensus 181 la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~ 259 (296)
+| ++.|++|+.+..+++|.+++++ +|.|..++|+. +++.+.+.+.+ ++|+|+.||++|++.++.++..| +..+++
T Consensus 170 iA-KlkG~rVVGiaGg~eK~~~l~~~lGfD~~idyk~-~d~~~~L~~a~-P~GIDvyfeNVGg~v~DAv~~~l-n~~aRi 245 (340)
T COG2130 170 IA-KLKGCRVVGIAGGAEKCDFLTEELGFDAGIDYKA-EDFAQALKEAC-PKGIDVYFENVGGEVLDAVLPLL-NLFARI 245 (340)
T ss_pred HH-HhhCCeEEEecCCHHHHHHHHHhcCCceeeecCc-ccHHHHHHHHC-CCCeEEEEEcCCchHHHHHHHhh-ccccce
Confidence 99 7899999999999999999998 89999999998 79999999987 57999999999999999999999 776666
Q ss_pred Eeec-----------------ccceeeeeEEecccc
Q psy1959 260 FTNE-----------------KSLVNKVLEVSGGKY 278 (296)
Q Consensus 260 ~~~~-----------------~~~~~k~~~i~g~~~ 278 (296)
.++. ..++.|.+++.|.-.
T Consensus 246 ~~CG~IS~YN~~~~~~gp~~l~~l~~kr~~v~Gfiv 281 (340)
T COG2130 246 PVCGAISQYNAPELPPGPRRLPLLMAKRLRVQGFIV 281 (340)
T ss_pred eeeeehhhcCCCCCCCCcchhhHHHhhhheeEEEEe
Confidence 3332 256677788887654
No 109
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=99.96 E-value=8.1e-27 Score=212.10 Aligned_cols=207 Identities=29% Similarity=0.397 Sum_probs=173.7
Q ss_pred CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCE
Q psy1959 25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDK 104 (296)
Q Consensus 25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~ 104 (296)
.+.|++.++ ||+||+.++++|++|+....+... ..+|.++|||++|+|+++ |+++..+++||+
T Consensus 19 ~~~~~~~~~-----ev~v~v~~~~i~~~d~~~~~~~~~--~~~~~~~g~e~~G~v~~v----------G~~v~~~~~Gd~ 81 (325)
T cd08264 19 VKDPKPGPG-----EVLIRVKMAGVNPVDYNVINAVKV--KPMPHIPGAEFAGVVEEV----------GDHVKGVKKGDR 81 (325)
T ss_pred ccCCCCCCC-----eEEEEEEEEEechHHHHHHhCCCC--CCCCeecccceeEEEEEE----------CCCCCCCCCCCE
Confidence 345567778 999999999999999988875221 235778999999999999 999999999999
Q ss_pred EEEecC-------------------------CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCC
Q psy1959 105 VLALNK-------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKL 159 (296)
Q Consensus 105 V~~~~~-------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~ 159 (296)
|++... ...|+|++|++++...++++|+++++++++.++.++.+||+++.. +++
T Consensus 82 V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~-~~~ 160 (325)
T cd08264 82 VVVYNRVFDGTCDMCLSGNEMLCRNGGIIGVVSNGGYAEYIVVPEKNLFKIPDSISDELAASLPVAALTAYHALKT-AGL 160 (325)
T ss_pred EEECCCcCCCCChhhcCCCccccCccceeeccCCCceeeEEEcCHHHceeCCCCCCHHHhhhhhhhhHHHHHHHHh-cCC
Confidence 997521 024899999999999999999999999999999999999999954 899
Q ss_pred CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEEC
Q psy1959 160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEA 239 (296)
Q Consensus 160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~ 239 (296)
++|++++|+|++|++|++++++| +..|++|+++++ .+.++++|++.+++.++ ..+.+.+.+ +++|+++|+
T Consensus 161 ~~g~~vlI~g~~g~vg~~~~~~a-~~~G~~v~~~~~----~~~~~~~g~~~~~~~~~---~~~~l~~~~--~~~d~vl~~ 230 (325)
T cd08264 161 GPGETVVVFGASGNTGIFAVQLA-KMMGAEVIAVSR----KDWLKEFGADEVVDYDE---VEEKVKEIT--KMADVVINS 230 (325)
T ss_pred CCCCEEEEECCCchHHHHHHHHH-HHcCCeEEEEeH----HHHHHHhCCCeeecchH---HHHHHHHHh--CCCCEEEEC
Confidence 99999999999999999999999 678999988863 36777889877776643 245566655 589999999
Q ss_pred CCCccHHHHHHHhhccCceEE
Q psy1959 240 VGGEDKTDLIRQKGAWAALTF 260 (296)
Q Consensus 240 ~g~~~~~~~~~~lg~~~g~~~ 260 (296)
+|+..+..+++++ +.+|++.
T Consensus 231 ~g~~~~~~~~~~l-~~~g~~v 250 (325)
T cd08264 231 LGSSFWDLSLSVL-GRGGRLV 250 (325)
T ss_pred CCHHHHHHHHHhh-ccCCEEE
Confidence 9998899999999 7777664
No 110
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=99.96 E-value=1.5e-26 Score=210.66 Aligned_cols=218 Identities=22% Similarity=0.209 Sum_probs=184.6
Q ss_pred cceEEecCCCC-----C----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEc
Q psy1959 13 SDLLLYNGSGD-----A----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVA 83 (296)
Q Consensus 13 ~~~~~~~~~~~-----~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~ 83 (296)
|+++++.++++ . .+.|.+.++ ||+||+.++++|++|+..+.|.++. ..+|.++|||++|+|+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----ev~irv~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~v- 73 (329)
T cd08298 1 MKAMVLEKPGPIEENPLRLTEVPVPEPGPG-----EVLIKVEACGVCRTDLHIVEGDLPP-PKLPLIPGHEIVGRVEAV- 73 (329)
T ss_pred CeEEEEecCCCCCCCCceEEeccCCCCCCC-----EEEEEEEEEeccHHHHHHHhCCCCC-CCCCccccccccEEEEEE-
Confidence 56777777662 2 344556677 9999999999999999999887654 456889999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCEEEEec--------------------------CCCCCcccceEeeeCCceEECCCCCCHH
Q psy1959 84 DTKSSSTEEDDEEDVLQVGDKVLALN--------------------------KELLHGFSDQCVVHTNDVFKIPEKMTFE 137 (296)
Q Consensus 84 ~~~~~~~~~g~~v~~~~~Gd~V~~~~--------------------------~~~~g~~~~~~~v~~~~~~~iP~~~~~~ 137 (296)
|+++.++++||+|++.. ....|+|++|+.++.+.++++|+++++.
T Consensus 74 ---------G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~ 144 (329)
T cd08298 74 ---------GPGVTRFSVGDRVGVPWLGSTCGECRYCRSGRENLCDNARFTGYTVDGGYAEYMVADERFAYPIPEDYDDE 144 (329)
T ss_pred ---------CCCCCCCcCCCEEEEeccCCCCCCChhHhCcChhhCCCccccccccCCceEEEEEecchhEEECCCCCCHH
Confidence 99998999999998621 0024899999999999999999999999
Q ss_pred HHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCc
Q psy1959 138 HAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNE 217 (296)
Q Consensus 138 ~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~ 217 (296)
+++.+++++.+||+++ +.++++++++++|+|+ |++|++++++| +..|++|+++++++++.+.++++|++..++.+.
T Consensus 145 ~~~~~~~~~~ta~~~~-~~~~~~~~~~vlV~g~-g~vg~~~~~la-~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~- 220 (329)
T cd08298 145 EAAPLLCAGIIGYRAL-KLAGLKPGQRLGLYGF-GASAHLALQIA-RYQGAEVFAFTRSGEHQELARELGADWAGDSDD- 220 (329)
T ss_pred HhhHhhhhhHHHHHHH-HhhCCCCCCEEEEECC-cHHHHHHHHHH-HHCCCeEEEEcCChHHHHHHHHhCCcEEeccCc-
Confidence 9999999999999999 8899999999999985 99999999999 668999999999999999999999877776644
Q ss_pred hhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEe
Q psy1959 218 KSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFT 261 (296)
Q Consensus 218 ~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~ 261 (296)
. .++++|+++++.+. ..++.+++++ +.+|++..
T Consensus 221 ~----------~~~~vD~vi~~~~~~~~~~~~~~~l-~~~G~~v~ 254 (329)
T cd08298 221 L----------PPEPLDAAIIFAPVGALVPAALRAV-KKGGRVVL 254 (329)
T ss_pred c----------CCCcccEEEEcCCcHHHHHHHHHHh-hcCCEEEE
Confidence 1 24579999998765 6889999999 77777754
No 111
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=99.96 E-value=1.8e-26 Score=209.53 Aligned_cols=242 Identities=20% Similarity=0.287 Sum_probs=188.1
Q ss_pred cceEEecCCCC-------CCCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccC
Q psy1959 13 SDLLLYNGSGD-------AKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADT 85 (296)
Q Consensus 13 ~~~~~~~~~~~-------~~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~ 85 (296)
|+++++++++. ..|.|.|.++ ||+||+.++++|+.|.....|.+.....+|.++|||++|+|++.
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~-----~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~~--- 72 (324)
T cd08288 1 FKALVLEKDDGGTSAELRELDESDLPEG-----DVTVEVHYSTLNYKDGLAITGKGGIVRTFPLVPGIDLAGTVVES--- 72 (324)
T ss_pred CeeEEEeccCCCcceEEEECCCCCCCCC-----eEEEEEEEEecCHHHHHHhcCCccccCCCCCccccceEEEEEeC---
Confidence 45666665542 1677778888 99999999999999999988866433446788999999999874
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEecC----CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHH--HHcCC
Q psy1959 86 KSSSTEEDDEEDVLQVGDKVLALNK----ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFS--RHAKL 159 (296)
Q Consensus 86 ~~~~~~~g~~v~~~~~Gd~V~~~~~----~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~--~~~~~ 159 (296)
+ +..+++||+|+++.. +..|+|++|++++.+.++++|++++.++++.++.++++|+.++. +....
T Consensus 73 -------~--~~~~~~Gd~V~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~ 143 (324)
T cd08288 73 -------S--SPRFKPGDRVVLTGWGVGERHWGGYAQRARVKADWLVPLPEGLSARQAMAIGTAGFTAMLCVMALEDHGV 143 (324)
T ss_pred -------C--CCCCCCCCEEEECCccCCCCCCCcceeEEEEchHHeeeCCCCCCHHHHhhhhhHHHHHHHHHHHHhhcCc
Confidence 3 356999999998631 12489999999999999999999999999999999999987764 12344
Q ss_pred C-CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959 160 K-EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFE 238 (296)
Q Consensus 160 ~-~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld 238 (296)
. ++++++|+|++|++|++++|+| +.+|++|++++.++++.+.++++|++.++++++ . ...+.....+ ++|.++|
T Consensus 144 ~~~~~~vlI~ga~g~vg~~~~~~A-~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~-~--~~~~~~~~~~-~~~~~~d 218 (324)
T cd08288 144 TPGDGPVLVTGAAGGVGSVAVALL-ARLGYEVVASTGRPEEADYLRSLGASEIIDRAE-L--SEPGRPLQKE-RWAGAVD 218 (324)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHH-HHCCCeEEEEeCCHHHHHHHHhcCCCEEEEcch-h--hHhhhhhccC-cccEEEE
Confidence 4 6789999999999999999999 678999999999999999999999988887754 2 2244444433 5899999
Q ss_pred CCCCccHHHHHHHhhccCceEEee-----------cccceeeeeEEeccc
Q psy1959 239 AVGGEDKTDLIRQKGAWAALTFTN-----------EKSLVNKVLEVSGGK 277 (296)
Q Consensus 239 ~~g~~~~~~~~~~lg~~~g~~~~~-----------~~~~~~k~~~i~g~~ 277 (296)
++++..+..++..+ +++|.+... ...++.+++++.+..
T Consensus 219 ~~~~~~~~~~~~~~-~~~g~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (324)
T cd08288 219 TVGGHTLANVLAQT-RYGGAVAACGLAGGADLPTTVMPFILRGVTLLGID 267 (324)
T ss_pred CCcHHHHHHHHHHh-cCCCEEEEEEecCCCCCCcchhhhhccccEEEEEE
Confidence 99987777888888 676655321 112336667777653
No 112
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.96 E-value=1.3e-26 Score=212.40 Aligned_cols=225 Identities=24% Similarity=0.318 Sum_probs=182.6
Q ss_pred cceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCC--CCCCCCCCcCCCceeEEEEEEccC
Q psy1959 13 SDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSG--DAKPTLPLVPGFEFSGTVIEVADT 85 (296)
Q Consensus 13 ~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~--~~~~~~p~~~G~e~~G~V~~v~~~ 85 (296)
||++++..++.. .|.|.|.++ |++||+.++++|+.|+..+.+.. .....+|.++|+|++|+|+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~--- 72 (341)
T cd05281 1 MKAIVKTKAGPGAELVEVPVPKPGPG-----EVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEV--- 72 (341)
T ss_pred CcceEEecCCCceEEEeCCCCCCCCC-----eEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEE---
Confidence 455555554432 566777888 99999999999999988865532 112345778999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEecC-------------------------CCCCcccceEeeeCCceEECCCCCCHHHHh
Q psy1959 86 KSSSTEEDDEEDVLQVGDKVLALNK-------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAA 140 (296)
Q Consensus 86 ~~~~~~~g~~v~~~~~Gd~V~~~~~-------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa 140 (296)
|+++..+++||+|+++.. ...|+|++|++++.+.++++|++++.+.+
T Consensus 73 -------G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~lP~~~~~~~a- 144 (341)
T cd05281 73 -------GEGVTRVKVGDYVSAETHIVCGKCYQCRTGNYHVCQNTKILGVDTDGCFAEYVVVPEENLWKNDKDIPPEIA- 144 (341)
T ss_pred -------CCCCCCCCCCCEEEECCccCCCCChHHHCcCcccCcccceEeccCCCcceEEEEechHHcEECcCCCCHHHh-
Confidence 999989999999998511 02489999999999999999999998554
Q ss_pred hhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCCcEEEEcCCchh
Q psy1959 141 SLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALTFTNEKS 219 (296)
Q Consensus 141 ~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 219 (296)
+++.++.++++++. ...++|++|+|.|+ |++|++++++| +..|+ +|++++++++|.+.++++|++.+++.+. .+
T Consensus 145 ~~~~~~~~a~~~~~--~~~~~g~~vlV~g~-g~vg~~~~~la-~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~ 219 (341)
T cd05281 145 SIQEPLGNAVHTVL--AGDVSGKSVLITGC-GPIGLMAIAVA-KAAGASLVIASDPNPYRLELAKKMGADVVINPRE-ED 219 (341)
T ss_pred hhhhHHHHHHHHHH--hcCCCCCEEEEECC-CHHHHHHHHHH-HHcCCcEEEEECCCHHHHHHHHHhCcceeeCccc-cc
Confidence 57788899998874 45679999999875 99999999999 67899 7999988888999999999887777665 56
Q ss_pred HHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE
Q psy1959 220 LVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF 260 (296)
Q Consensus 220 ~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~ 260 (296)
+. .+.+..+++++|++||++|+ ..+..+++++ +.+|.+.
T Consensus 220 ~~-~~~~~~~~~~vd~vld~~g~~~~~~~~~~~l-~~~G~~v 259 (341)
T cd05281 220 VV-EVKSVTDGTGVDVVLEMSGNPKAIEQGLKAL-TPGGRVS 259 (341)
T ss_pred HH-HHHHHcCCCCCCEEEECCCCHHHHHHHHHHh-ccCCEEE
Confidence 66 77887777899999999987 5788999999 7777764
No 113
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=99.95 E-value=2.3e-26 Score=203.78 Aligned_cols=204 Identities=29% Similarity=0.398 Sum_probs=183.0
Q ss_pred CcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCEEEEecCCCCCccc
Q psy1959 38 GTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFS 117 (296)
Q Consensus 38 ~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~ 117 (296)
+|++||+.++++|++|+....|.+ ..+|.++|+|++|+|+++ |+++..+++||+|+++.. |+|+
T Consensus 1 ~~v~i~v~~~~~~~~d~~~~~g~~---~~~~~~~g~e~~G~v~~~----------g~~~~~~~~Gd~V~~~~~---g~~~ 64 (293)
T cd05195 1 DEVEVEVKAAGLNFRDVLVALGLL---PGDETPLGLECSGIVTRV----------GSGVTGLKVGDRVMGLAP---GAFA 64 (293)
T ss_pred CceEEEEEEEecCHHHHHHHhCCC---CCCCCccceeeeEEEEee----------cCCccCCCCCCEEEEEec---Cccc
Confidence 389999999999999999998765 245789999999999999 999989999999999865 8999
Q ss_pred ceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc
Q psy1959 118 DQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE 197 (296)
Q Consensus 118 ~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~ 197 (296)
+|+.++.+.++++|++++..+++.++.++.++|.++.+..++++|++++|+|++|++|++++++| +..|++|+++++++
T Consensus 65 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~g~~g~~~~~~a-~~~g~~v~~~~~~~ 143 (293)
T cd05195 65 THVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQKGESVLIHAAAGGVGQAAIQLA-QHLGAEVFATVGSE 143 (293)
T ss_pred ceEEechhheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhccCCCCEEEEecCCCHHHHHHHHHH-HHcCCEEEEEeCCH
Confidence 99999999999999999999999999999999999888889999999999998899999999999 67899999999999
Q ss_pred chHHHHHhcC--CcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEE
Q psy1959 198 DKTDLIRQKG--AWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTF 260 (296)
Q Consensus 198 ~~~~~~~~~g--~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~ 260 (296)
++.+.+++.+ ++..++..+ .++.+.+++.+.++++|++++++|+..+..+++++ +.+|.+.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l-~~~g~~v 206 (293)
T cd05195 144 EKREFLRELGGPVDHIFSSRD-LSFADGILRATGGRGVDVVLNSLSGELLRASWRCL-APFGRFV 206 (293)
T ss_pred HHHHHHHHhCCCcceEeecCc-hhHHHHHHHHhCCCCceEEEeCCCchHHHHHHHhc-ccCceEE
Confidence 9999998887 666777665 56777888887777899999999998899999999 7777664
No 114
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=99.95 E-value=2.3e-26 Score=210.70 Aligned_cols=215 Identities=24% Similarity=0.314 Sum_probs=178.3
Q ss_pred CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCC--CCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCC
Q psy1959 25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSG--DAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVG 102 (296)
Q Consensus 25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~--~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~G 102 (296)
.|.|.|.++ ||+||+.++++|+.|...+.+.. ....++|.++|+|++|+|+++ |+++..+++|
T Consensus 16 ~~~p~~~~~-----ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~v----------G~~v~~~~~G 80 (340)
T TIGR00692 16 VPVPEPGPG-----EVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGI----------GPGVEGIKVG 80 (340)
T ss_pred CCCCCCCCC-----eEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEE----------CCCCCcCCCC
Confidence 567777888 99999999999999998876541 112245778999999999999 9999999999
Q ss_pred CEEEEecC-------------------------CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHc
Q psy1959 103 DKVLALNK-------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHA 157 (296)
Q Consensus 103 d~V~~~~~-------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~ 157 (296)
|+|++... ...|+|++|++++.+.++++|++++.+.+ +++.++.+|++++ ..
T Consensus 81 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a-~~~~~~~~a~~~~--~~ 157 (340)
T TIGR00692 81 DYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGCFAEYAVVPAQNIWKNPKSIPPEYA-TIQEPLGNAVHTV--LA 157 (340)
T ss_pred CEEEECCcCCCCCChhhhCcChhhCcCcceEeecCCCcceeEEEeehHHcEECcCCCChHhh-hhcchHHHHHHHH--Hc
Confidence 99987310 02489999999999999999999998655 5778899999886 45
Q ss_pred CCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCE-EEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEE
Q psy1959 158 KLKEKQTVLVTAAGGGLGLAAVDMATKIYKAK-VIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVV 236 (296)
Q Consensus 158 ~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~-Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~v 236 (296)
..++|++++|.|+ |++|++++|+| +.+|++ |+++++++++.+.++++|++.++++.. .++.+.+.+.++++++|++
T Consensus 158 ~~~~g~~vlI~~~-g~vg~~a~~la-~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~-~~~~~~l~~~~~~~~~d~v 234 (340)
T TIGR00692 158 GPISGKSVLVTGA-GPIGLMAIAVA-KASGAYPVIVSDPNEYRLELAKKMGATYVVNPFK-EDVVKEVADLTDGEGVDVF 234 (340)
T ss_pred cCCCCCEEEEECC-CHHHHHHHHHH-HHcCCcEEEEECCCHHHHHHHHHhCCcEEEcccc-cCHHHHHHHhcCCCCCCEE
Confidence 5789999999875 99999999999 668996 888888888999999999977777765 6777788888777889999
Q ss_pred EECCCC-ccHHHHHHHhhccCceEEe
Q psy1959 237 FEAVGG-EDKTDLIRQKGAWAALTFT 261 (296)
Q Consensus 237 ld~~g~-~~~~~~~~~lg~~~g~~~~ 261 (296)
+|++|+ ..+...++++ +.+|++..
T Consensus 235 ld~~g~~~~~~~~~~~l-~~~g~~v~ 259 (340)
T TIGR00692 235 LEMSGAPKALEQGLQAV-TPGGRVSL 259 (340)
T ss_pred EECCCCHHHHHHHHHhh-cCCCEEEE
Confidence 999987 6788899999 77776633
No 115
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=99.95 E-value=5.4e-26 Score=204.77 Aligned_cols=207 Identities=37% Similarity=0.594 Sum_probs=184.0
Q ss_pred cEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCEEEEecCCCCCcccc
Q psy1959 39 TIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSD 118 (296)
Q Consensus 39 evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~ 118 (296)
+++||+.++++|+.|+....|.+......|.++|+|++|+|+.+ |+++..+++||+|+++.. .|+|++
T Consensus 29 ~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~----------g~~~~~~~~G~~V~~~~~--~~~~~~ 96 (323)
T cd08241 29 EVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFVPGSEVAGVVEAV----------GEGVTGFKVGDRVVALTG--QGGFAE 96 (323)
T ss_pred eEEEEEEEEecCHHHHHHHcCCCCCCCCCCCcccceeEEEEEEe----------CCCCCCCCCCCEEEEecC--CceeEE
Confidence 99999999999999999988876544455778999999999999 998888999999999872 389999
Q ss_pred eEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc
Q psy1959 119 QCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED 198 (296)
Q Consensus 119 ~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~ 198 (296)
|+.++.+.++++|++++..+++.+..++.+||.++.....++++++++|+|++|++|++++++| +..|++|++++++++
T Consensus 97 ~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~a-~~~g~~v~~~~~~~~ 175 (323)
T cd08241 97 EVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLA-KALGARVIAAASSEE 175 (323)
T ss_pred EEEcCHHHceeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHH-HHhCCEEEEEeCCHH
Confidence 9999999999999999999998899999999999877889999999999999999999999999 668999999999999
Q ss_pred hHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEE
Q psy1959 199 KTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTF 260 (296)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~ 260 (296)
+.+.++++|++..++... .++.+.+...+.++++|++++++|+.....+++++ +.+|.+.
T Consensus 176 ~~~~~~~~g~~~~~~~~~-~~~~~~i~~~~~~~~~d~v~~~~g~~~~~~~~~~~-~~~g~~v 235 (323)
T cd08241 176 KLALARALGADHVIDYRD-PDLRERVKALTGGRGVDVVYDPVGGDVFEASLRSL-AWGGRLL 235 (323)
T ss_pred HHHHHHHcCCceeeecCC-ccHHHHHHHHcCCCCcEEEEECccHHHHHHHHHhh-ccCCEEE
Confidence 999999899877777665 56777788887777899999999998888999999 7777663
No 116
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=99.95 E-value=7.1e-27 Score=208.82 Aligned_cols=191 Identities=22% Similarity=0.276 Sum_probs=159.7
Q ss_pred cCCCceeEEEEEEccCCCCCCCCCCCCC------CCCCCCEEEEecC--------------------------------C
Q psy1959 70 VPGFEFSGTVIEVADTKSSSTEEDDEED------VLQVGDKVLALNK--------------------------------E 111 (296)
Q Consensus 70 ~~G~e~~G~V~~v~~~~~~~~~~g~~v~------~~~~Gd~V~~~~~--------------------------------~ 111 (296)
++|||++|+|+++ |++|+ ++++||||+.... .
T Consensus 1 v~GHE~~G~V~~v----------G~~v~~~~~~~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~~~~~ 70 (280)
T TIGR03366 1 VLGHEIVGEVVAL----------RGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRKYGHEALDSGWP 70 (280)
T ss_pred CCCcccceEEEEe----------CCCccccccCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCChhhcCcccccCCcc
Confidence 5899999999999 99998 8999999975321 0
Q ss_pred CCCcccceEeeeCC-ceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCE-
Q psy1959 112 LLHGFSDQCVVHTN-DVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAK- 189 (296)
Q Consensus 112 ~~g~~~~~~~v~~~-~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~- 189 (296)
.+|+|+||+++|+. .++++|+++++++++.+...+.|||+++. .....+|++|+|+|+ |++|++++|+| +.+|++
T Consensus 71 ~~G~~aey~~v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al~-~~~~~~g~~VlV~G~-G~vG~~~~~~a-k~~G~~~ 147 (280)
T TIGR03366 71 LSGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCATATVMAALE-AAGDLKGRRVLVVGA-GMLGLTAAAAA-AAAGAAR 147 (280)
T ss_pred ccccceeeEEecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHHH-hccCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCE
Confidence 24999999999997 79999999999999999999999999984 456679999999997 99999999999 678996
Q ss_pred EEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE--------
Q psy1959 190 VIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF-------- 260 (296)
Q Consensus 190 Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~-------- 260 (296)
|++++++++|.+.++++|++.+++..+ ..+.+.+.+.+.++|++||++|. ..+..+++++ +++|++.
T Consensus 148 Vi~~~~~~~r~~~a~~~Ga~~~i~~~~---~~~~~~~~~~~~g~d~vid~~G~~~~~~~~~~~l-~~~G~iv~~G~~~~~ 223 (280)
T TIGR03366 148 VVAADPSPDRRELALSFGATALAEPEV---LAERQGGLQNGRGVDVALEFSGATAAVRACLESL-DVGGTAVLAGSVFPG 223 (280)
T ss_pred EEEECCCHHHHHHHHHcCCcEecCchh---hHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHh-cCCCEEEEeccCCCC
Confidence 888888999999999999988777643 24556667777789999999998 5789999999 7776663
Q ss_pred ----eecccceeeeeEEeccc
Q psy1959 261 ----TNEKSLVNKVLEVSGGK 277 (296)
Q Consensus 261 ----~~~~~~~~k~~~i~g~~ 277 (296)
++...++.|+++|.|+.
T Consensus 224 ~~~~i~~~~~~~~~~~i~g~~ 244 (280)
T TIGR03366 224 GPVALDPEQVVRRWLTIRGVH 244 (280)
T ss_pred CceeeCHHHHHhCCcEEEecC
Confidence 22235677888898876
No 117
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=99.95 E-value=9.5e-26 Score=202.13 Aligned_cols=226 Identities=27% Similarity=0.367 Sum_probs=186.6
Q ss_pred cceEEecCCCCC-------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCC--CCCCCCCcCCCceeEEEEEEc
Q psy1959 13 SDLLLYNGSGDA-------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGD--AKPTLPLVPGFEFSGTVIEVA 83 (296)
Q Consensus 13 ~~~~~~~~~~~~-------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~--~~~~~p~~~G~e~~G~V~~v~ 83 (296)
|++++++.++.. .+.|.+.++ +|+||+.++++|+.|+..+.|... ....+|..+|||++|+|+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~- 74 (309)
T cd05289 1 MKAVRIHEYGGPEVLELADVPTPEPGPG-----EVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAV- 74 (309)
T ss_pred CceEEEcccCCccceeecccCCCCCCCC-----eEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEee-
Confidence 456666654432 344556777 999999999999999998877653 12345889999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCEEEEecC-CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCC
Q psy1959 84 DTKSSSTEEDDEEDVLQVGDKVLALNK-ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEK 162 (296)
Q Consensus 84 ~~~~~~~~~g~~v~~~~~Gd~V~~~~~-~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g 162 (296)
|+++..+++||+|+++.. ...|+|++|+.++...++++|++++...++.++..+.++|.++.+...+.++
T Consensus 75 ---------G~~~~~~~~G~~V~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 145 (309)
T cd05289 75 ---------GPGVTGFKVGDEVFGMTPFTRGGAYAEYVVVPADELALKPANLSFEEAAALPLAGLTAWQALFELGGLKAG 145 (309)
T ss_pred ---------CCCCCCCCCCCEEEEccCCCCCCcceeEEEecHHHhccCCCCCCHHHHHhhhHHHHHHHHHHHhhcCCCCC
Confidence 999999999999999861 0128999999999999999999999999999999999999999887779999
Q ss_pred cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959 163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG 242 (296)
Q Consensus 163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~ 242 (296)
++++|+|++|++|+++++++ +..|++|++++.++ +.+.++++|.+..++... .++.+ ...++++|++++++|+
T Consensus 146 ~~vlv~g~~g~~g~~~~~~a-~~~g~~v~~~~~~~-~~~~~~~~g~~~~~~~~~-~~~~~----~~~~~~~d~v~~~~~~ 218 (309)
T cd05289 146 QTVLIHGAAGGVGSFAVQLA-KARGARVIATASAA-NADFLRSLGADEVIDYTK-GDFER----AAAPGGVDAVLDTVGG 218 (309)
T ss_pred CEEEEecCCchHHHHHHHHH-HHcCCEEEEEecch-hHHHHHHcCCCEEEeCCC-Cchhh----ccCCCCceEEEECCch
Confidence 99999999899999999999 67899999998777 888888889877776654 33332 3445689999999999
Q ss_pred ccHHHHHHHhhccCceEEe
Q psy1959 243 EDKTDLIRQKGAWAALTFT 261 (296)
Q Consensus 243 ~~~~~~~~~lg~~~g~~~~ 261 (296)
.....+++++ +.+|.+..
T Consensus 219 ~~~~~~~~~l-~~~g~~v~ 236 (309)
T cd05289 219 ETLARSLALV-KPGGRLVS 236 (309)
T ss_pred HHHHHHHHHH-hcCcEEEE
Confidence 9899999999 77777643
No 118
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=99.95 E-value=1.2e-25 Score=204.75 Aligned_cols=221 Identities=22% Similarity=0.256 Sum_probs=182.0
Q ss_pred ceEEecCCC-CC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCC
Q psy1959 14 DLLLYNGSG-DA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSS 88 (296)
Q Consensus 14 ~~~~~~~~~-~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~ 88 (296)
|++++.+++ +. .|.|.+.++ +|+|++.++++|+.|...+.|.+.. ..+|.++|+|++|+|+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~v~v~~~~i~~~d~~~~~g~~~~-~~~p~~~g~e~~G~v~~~------ 68 (330)
T cd08245 1 KAAVVHAAGGPLEPEEVPVPEPGPG-----EVLIKIEACGVCHTDLHAAEGDWGG-SKYPLVPGHEIVGEVVEV------ 68 (330)
T ss_pred CeEEEecCCCCceEEeccCCCCCCC-----eEEEEEEEEeccHHHHHHHcCCCCC-CCCCcccCccceEEEEEE------
Confidence 355555553 22 566667777 9999999999999999999887643 356889999999999999
Q ss_pred CCCCCCCCCCCCCCCEEEEec--------------------------CCCCCcccceEeeeCCceEECCCCCCHHHHhhh
Q psy1959 89 STEEDDEEDVLQVGDKVLALN--------------------------KELLHGFSDQCVVHTNDVFKIPEKMTFEHAASL 142 (296)
Q Consensus 89 ~~~~g~~v~~~~~Gd~V~~~~--------------------------~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l 142 (296)
|+++.++++||+|+... .+..|+|++|+.++.+.++++|+++++.+++.+
T Consensus 69 ----g~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~l 144 (330)
T cd08245 69 ----GAGVEGRKVGDRVGVGWLVGSCGRCEYCRRGLENLCQKAVNTGYTTQGGYAEYMVADAEYTVLLPDGLPLAQAAPL 144 (330)
T ss_pred ----CCCCcccccCCEEEEccccCCCCCChhhhCcCcccCcCccccCcccCCccccEEEEcHHHeEECCCCCCHHHhhhh
Confidence 99998999999998421 012489999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHH
Q psy1959 143 ADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVN 222 (296)
Q Consensus 143 ~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 222 (296)
...+.+||.++.. .+++++++|+|+|+ |++|++++++| +..|.+|+++++++++.+.++++|++.+++... .....
T Consensus 145 ~~~~~ta~~~l~~-~~~~~~~~vlI~g~-g~iG~~~~~~a-~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~ 220 (330)
T cd08245 145 LCAGITVYSALRD-AGPRPGERVAVLGI-GGLGHLAVQYA-RAMGFETVAITRSPDKRELARKLGADEVVDSGA-ELDEQ 220 (330)
T ss_pred hhhHHHHHHHHHh-hCCCCCCEEEEECC-CHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCC-cchHH
Confidence 9999999999955 78999999999976 77999999999 668999999999999999999999887776654 22222
Q ss_pred HHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE
Q psy1959 223 KVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF 260 (296)
Q Consensus 223 ~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~ 260 (296)
. . .+++|+++|++++ .....+++++ +.+|++.
T Consensus 221 ~----~-~~~~d~vi~~~~~~~~~~~~~~~l-~~~G~~i 253 (330)
T cd08245 221 A----A-AGGADVILVTVVSGAAAEAALGGL-RRGGRIV 253 (330)
T ss_pred h----c-cCCCCEEEECCCcHHHHHHHHHhc-ccCCEEE
Confidence 2 2 2479999999886 7888999999 7776664
No 119
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=99.95 E-value=1.7e-25 Score=203.57 Aligned_cols=210 Identities=21% Similarity=0.243 Sum_probs=176.6
Q ss_pred CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCC--CCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCC
Q psy1959 25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDA--KPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVG 102 (296)
Q Consensus 25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~--~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~G 102 (296)
.|.|.+.++ +|+||+.++++|+.|.....+.... +...+.++|+|++|+|+++ |.+ .+++|
T Consensus 25 ~~~p~~~~~-----~v~Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~----------G~~--~~~~G 87 (329)
T cd05288 25 VPLPELKDG-----EVLVRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVES----------RSP--DFKVG 87 (329)
T ss_pred ccCCCCCCC-----eEEEEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEec----------CCC--CCCCC
Confidence 566777888 9999999999999887655553211 1123557899999999999 754 69999
Q ss_pred CEEEEecCCCCCcccceEeeeC-CceEECCCCCC--HHHHhh-hccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHH
Q psy1959 103 DKVLALNKELLHGFSDQCVVHT-NDVFKIPEKMT--FEHAAS-LADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAA 178 (296)
Q Consensus 103 d~V~~~~~~~~g~~~~~~~v~~-~~~~~iP~~~~--~~~aa~-l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa 178 (296)
|+|+++ ++|++|+.++. +.++++|++++ ...+++ +++++.+||+++.+...+.++++|+|+|++|++|+++
T Consensus 88 d~V~~~-----~~~~~~~~v~~~~~~~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~ig~~~ 162 (329)
T cd05288 88 DLVSGF-----LGWQEYAVVDGASGLRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAAGAVGSVV 162 (329)
T ss_pred CEEecc-----cceEEEEEecchhhcEECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCCCEEEEecCcchHHHHH
Confidence 999886 47999999999 99999999995 545545 8999999999998888899999999999889999999
Q ss_pred HHHHHHhCCCEEEEEeCCcchHHHHHh-cCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCc
Q psy1959 179 VDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAA 257 (296)
Q Consensus 179 ~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g 257 (296)
+++| +..|++|+++++++++.+.+++ +|++.++++++ .++.+.+.+.++ +++|+++||+|+..+..+++++ +.+|
T Consensus 163 ~~~a-~~~G~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~v~~~~~-~~~d~vi~~~g~~~~~~~~~~l-~~~G 238 (329)
T cd05288 163 GQIA-KLLGARVVGIAGSDEKCRWLVEELGFDAAINYKT-PDLAEALKEAAP-DGIDVYFDNVGGEILDAALTLL-NKGG 238 (329)
T ss_pred HHHH-HHcCCEEEEEeCCHHHHHHHHhhcCCceEEecCC-hhHHHHHHHhcc-CCceEEEEcchHHHHHHHHHhc-CCCc
Confidence 9999 5689999999999999999988 89988888876 567777777764 6899999999998999999999 7777
Q ss_pred eEE
Q psy1959 258 LTF 260 (296)
Q Consensus 258 ~~~ 260 (296)
++.
T Consensus 239 ~~v 241 (329)
T cd05288 239 RIA 241 (329)
T ss_pred eEE
Confidence 663
No 120
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=99.95 E-value=1.1e-25 Score=206.03 Aligned_cols=211 Identities=24% Similarity=0.312 Sum_probs=172.3
Q ss_pred CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHc-CCCC-CCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCC
Q psy1959 25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYN-GSGD-AKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVG 102 (296)
Q Consensus 25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~-g~~~-~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~G 102 (296)
.|.|.+.++ ||+||+.++++|++|..... |.+. ....+|.++|+|++|+|+++ |+++..|++|
T Consensus 14 ~~~p~l~~~-----~v~I~v~~~~i~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~v----------G~~v~~~~~G 78 (339)
T cd08232 14 RPAPEPGPG-----EVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAV----------GPGVTGLAPG 78 (339)
T ss_pred cCCCCCCCC-----EEEEEEEEEEECcccHHHHcCCCCCcccccCCeecCccceEEEEee----------CCCCCcCCCC
Confidence 567778888 99999999999999988774 3321 11245779999999999999 9999999999
Q ss_pred CEEEEec------------------------------CCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHH
Q psy1959 103 DKVLALN------------------------------KELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIV 152 (296)
Q Consensus 103 d~V~~~~------------------------------~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~ 152 (296)
|+|++.. .+..|+|++|++++.+.++++|+++++++++. ..++.+||++
T Consensus 79 d~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~~~~~~aa~-~~~~~~a~~~ 157 (339)
T cd08232 79 QRVAVNPSRPCGTCDYCRAGRPNLCLNMRFLGSAMRFPHVQGGFREYLVVDASQCVPLPDGLSLRRAAL-AEPLAVALHA 157 (339)
T ss_pred CEEEEccCCcCCCChHHhCcCcccCccccceeeccccCCCCCceeeEEEechHHeEECcCCCCHHHhhh-cchHHHHHHH
Confidence 9998721 01248999999999999999999999999874 6788999999
Q ss_pred HHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHh-CC
Q psy1959 153 FSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVS-GG 230 (296)
Q Consensus 153 l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~-~~ 230 (296)
+.....+ ++++|+|.|+ |++|++++|+| +.+|+ +++++++++++.+.++++|++.++++++ .+ +.+.. ..
T Consensus 158 l~~~~~~-~~~~VLI~g~-g~vG~~~~~la-k~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~-~~----~~~~~~~~ 229 (339)
T cd08232 158 VNRAGDL-AGKRVLVTGA-GPIGALVVAAA-RRAGAAEIVATDLADAPLAVARAMGADETVNLAR-DP----LAAYAADK 229 (339)
T ss_pred HHhcCCC-CCCEEEEECC-CHHHHHHHHHH-HHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCc-hh----hhhhhccC
Confidence 8666666 9999999875 99999999999 56899 8999998888888889999888887755 33 22222 23
Q ss_pred CcccEEEECCCC-ccHHHHHHHhhccCceEE
Q psy1959 231 KYANVVFEAVGG-EDKTDLIRQKGAWAALTF 260 (296)
Q Consensus 231 ~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~ 260 (296)
.++|+++|+.|+ ..++..++++ +.+|++.
T Consensus 230 ~~vd~vld~~g~~~~~~~~~~~L-~~~G~~v 259 (339)
T cd08232 230 GDFDVVFEASGAPAALASALRVV-RPGGTVV 259 (339)
T ss_pred CCccEEEECCCCHHHHHHHHHHH-hcCCEEE
Confidence 469999999997 6788999999 7777764
No 121
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=99.94 E-value=1.8e-25 Score=198.02 Aligned_cols=199 Identities=28% Similarity=0.367 Sum_probs=178.1
Q ss_pred EEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCEEEEecCCCCCcccceEe
Q psy1959 42 EKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCV 121 (296)
Q Consensus 42 vkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~~~~ 121 (296)
||+.++++|+.|.....|.+. .|.++|+|++|+|+++ |+++..+++||+|+++.. |+|++|+.
T Consensus 2 i~v~~~~i~~~d~~~~~g~~~----~~~~~g~e~~G~v~~~----------G~~~~~~~~Gd~V~~~~~---g~~~~~~~ 64 (288)
T smart00829 2 VEVRAAGLNFRDVLIALGLLP----GEAVLGGECAGVVTRV----------GPGVTGLAVGDRVMGLAP---GSFATYVR 64 (288)
T ss_pred eeEEEEecCHHHHHHhcCCCC----CCCCCCceeEEEEEee----------CCCCcCCCCCCEEEEEcC---CceeeEEE
Confidence 789999999999999988653 2678999999999999 999989999999999865 89999999
Q ss_pred eeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHH
Q psy1959 122 VHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTD 201 (296)
Q Consensus 122 v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~ 201 (296)
++.+.++++|+++++.+++.+..++.++|.++.+...+++|++|+|+|+.|++|+++++++ +.+|++|+++++++++.+
T Consensus 65 ~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~~~~g~~~~~~a-~~~g~~v~~~~~~~~~~~ 143 (288)
T smart00829 65 TDARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARLRPGESVLIHAAAGGVGQAAIQLA-QHLGAEVFATAGSPEKRD 143 (288)
T ss_pred ccHHHeEECCCCCCHHHHHhchHHHHHHHHHHHHHhCCCCCCEEEEecCCcHHHHHHHHHH-HHcCCEEEEEeCCHHHHH
Confidence 9999999999999999999999999999999878889999999999998899999999999 678999999999999999
Q ss_pred HHHhcCC--cEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEE
Q psy1959 202 LIRQKGA--WAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTF 260 (296)
Q Consensus 202 ~~~~~g~--~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~ 260 (296)
.++++|+ +..+++.+ .++.+.+.+...++++|+++|++|+..+..+++++ +.+|.+.
T Consensus 144 ~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l-~~~g~~v 202 (288)
T smart00829 144 FLRELGIPDDHIFSSRD-LSFADEILRATGGRGVDVVLNSLAGEFLDASLRCL-APGGRFV 202 (288)
T ss_pred HHHHcCCChhheeeCCC-ccHHHHHHHHhCCCCcEEEEeCCCHHHHHHHHHhc-cCCcEEE
Confidence 9999998 66677665 56777788777777899999999988888899999 6666664
No 122
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.94 E-value=3.3e-25 Score=200.02 Aligned_cols=231 Identities=28% Similarity=0.397 Sum_probs=184.3
Q ss_pred eecccCCcceEEecCCCCCCCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCC--CCCCCCcCCCceeEEEEEEc
Q psy1959 6 QCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDA--KPTLPLVPGFEFSGTVIEVA 83 (296)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~--~~~~p~~~G~e~~G~V~~v~ 83 (296)
+++.+++.+.+.+.-. ..|.|.|.++ ||+|++.++++|+.|.....|.+.. ...+|..+|||++|+|+++
T Consensus 2 ~~~~~~~~~~~~~~~~--~~~~~~~~~~-----~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~- 73 (319)
T cd08267 2 VYTRYGSPEVLLLLEV--EVPIPTPKPG-----EVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAV- 73 (319)
T ss_pred eeCCCCChhhhhhccc--cCCCCCCCCC-----EEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEe-
Confidence 4455666665432311 2466677888 9999999999999999998776532 1234678999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCEEEEecC-CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCC
Q psy1959 84 DTKSSSTEEDDEEDVLQVGDKVLALNK-ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEK 162 (296)
Q Consensus 84 ~~~~~~~~~g~~v~~~~~Gd~V~~~~~-~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g 162 (296)
|+++.++++||+|++... ...|+|++|+.++.+.++++|++++.++++.++.++.+||+++.+...+++|
T Consensus 74 ---------G~~v~~~~~Gd~V~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g 144 (319)
T cd08267 74 ---------GSGVTRFKVGDEVFGRLPPKGGGALAEYVVAPESGLAKKPEGVSFEEAAALPVAGLTALQALRDAGKVKPG 144 (319)
T ss_pred ---------CCCCCCCCCCCEEEEeccCCCCceeeEEEEechhheEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCC
Confidence 999999999999998752 1248899999999999999999999999999999999999999888889999
Q ss_pred cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959 163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG 242 (296)
Q Consensus 163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~ 242 (296)
++++|+|++|++|++++++| +..|++|++++.+ ++.+.++++|.+.+++... .++. ...+.++++|++++|+|+
T Consensus 145 ~~vli~g~~g~~g~~~~~la-~~~g~~v~~~~~~-~~~~~~~~~g~~~~~~~~~-~~~~---~~~~~~~~~d~vi~~~~~ 218 (319)
T cd08267 145 QRVLINGASGGVGTFAVQIA-KALGAHVTGVCST-RNAELVRSLGADEVIDYTT-EDFV---ALTAGGEKYDVIFDAVGN 218 (319)
T ss_pred CEEEEEcCCcHHHHHHHHHH-HHcCCEEEEEeCH-HHHHHHHHcCCCEeecCCC-CCcc---hhccCCCCCcEEEECCCc
Confidence 99999999999999999999 6789999998865 8888899999877776654 3332 344556789999999995
Q ss_pred c--cHHHHHHHhhccCceEE
Q psy1959 243 E--DKTDLIRQKGAWAALTF 260 (296)
Q Consensus 243 ~--~~~~~~~~lg~~~g~~~ 260 (296)
. .....+..+ +.+|++.
T Consensus 219 ~~~~~~~~~~~l-~~~g~~i 237 (319)
T cd08267 219 SPFSLYRASLAL-KPGGRYV 237 (319)
T ss_pred hHHHHHHhhhcc-CCCCEEE
Confidence 3 334444447 6666664
No 123
>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.94 E-value=1.3e-24 Score=197.71 Aligned_cols=213 Identities=29% Similarity=0.480 Sum_probs=179.5
Q ss_pred CCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCEE
Q psy1959 26 PTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKV 105 (296)
Q Consensus 26 ~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V 105 (296)
+.|.|.++ +|+||+.++++|+.|.....|.+...+..|.++|||++|+|+.+ |+++.++++||+|
T Consensus 20 ~~~~~~~~-----~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~----------g~~~~~~~~G~~V 84 (337)
T cd08275 20 ALPEPSSG-----EVRVRVEACGLNFADLMARQGLYDSAPKPPFVPGFECAGTVEAV----------GEGVKDFKVGDRV 84 (337)
T ss_pred CCCCCCCC-----EEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCcceeEEEEEEE----------CCCCcCCCCCCEE
Confidence 44556778 99999999999999999988866544456788999999999999 9999999999999
Q ss_pred EEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHh
Q psy1959 106 LALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKI 185 (296)
Q Consensus 106 ~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~ 185 (296)
+++.. .|+|++|+.++.+.++++|+++++.+++.++.++.+||+++.+...+++|++|+|+|++|++|++++++| +.
T Consensus 85 ~~~~~--~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g~~g~~~~~~a-~~ 161 (337)
T cd08275 85 MGLTR--FGGYAEVVNVPADQVFPLPDGMSFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLC-KT 161 (337)
T ss_pred EEecC--CCeeeeEEEecHHHeEECCCCCCHHHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcchHHHHHHHHH-HH
Confidence 99854 4899999999999999999999999999999999999999988899999999999999999999999999 44
Q ss_pred C-CCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEE
Q psy1959 186 Y-KAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTF 260 (296)
Q Consensus 186 ~-g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~ 260 (296)
. ...++.. ..+++.++++++|++..++... .++.+.+++.++ +++|+++|++|+.....+++++ +.+|.+.
T Consensus 162 ~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~-~~~d~v~~~~g~~~~~~~~~~l-~~~g~~v 233 (337)
T cd08275 162 VPNVTVVGT-ASASKHEALKENGVTHVIDYRT-QDYVEEVKKISP-EGVDIVLDALGGEDTRKSYDLL-KPMGRLV 233 (337)
T ss_pred ccCcEEEEe-CCHHHHHHHHHcCCcEEeeCCC-CcHHHHHHHHhC-CCceEEEECCcHHHHHHHHHhh-ccCcEEE
Confidence 5 3232222 2345788888889887777765 567777777764 6899999999998888999999 7777664
No 124
>KOG1196|consensus
Probab=99.90 E-value=5.6e-22 Score=171.70 Aligned_cols=249 Identities=20% Similarity=0.245 Sum_probs=185.6
Q ss_pred eeEeecccCCcceEEecCCCCCCCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCC----ceeEE
Q psy1959 3 IDIQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGF----EFSGT 78 (296)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~----e~~G~ 78 (296)
++.+...+++...+.+.....+. ..+++.+ +||||..|.+..|......+.-.+..-..|+.+|- ..+|+
T Consensus 9 Lk~y~~g~P~~~d~~~~~~~~el-~~~~~s~-----~vlvknlYLS~DPymR~rM~~~~~~~y~~~~~~G~pi~g~GV~k 82 (343)
T KOG1196|consen 9 LKNYVTGFPTESDFEFTTTTVEL-RVPLGSG-----EVLVKNLYLSCDPYMRIRMGKPDPSDYAPPYEPGKPIDGFGVAK 82 (343)
T ss_pred EeccCCCCCccccceeeeeeecc-cCCCCCc-----cEEeEeeeecCCHHHHhhccCCCcccccCcccCCcEecCCceEE
Confidence 44445566666666555433222 2335667 99999999999887543332111110112444442 45678
Q ss_pred EEEEccCCCCCCCCCCCCCCCCCCCEEEEecCCCCCcccceEeeeCCc--eEECCC--CCCHHHH-hhhccHHHHHHHHH
Q psy1959 79 VIEVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTND--VFKIPE--KMTFEHA-ASLADSYSTAQIVF 153 (296)
Q Consensus 79 V~~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~--~~~iP~--~~~~~~a-a~l~~~~~ta~~~l 153 (296)
|++. +-+++++||.|+++.. |.||.+++.+. .+++|. +.++.-. ..|.++.+|||-.+
T Consensus 83 Vi~S------------~~~~~~~GD~v~g~~g-----Weeysii~~~~~~~~ki~~~~~~pLs~ylg~lGm~glTAy~Gf 145 (343)
T KOG1196|consen 83 VIDS------------GHPNYKKGDLVWGIVG-----WEEYSVITPNDLEHFKIQHPTDVPLSYYLGLLGMPGLTAYAGF 145 (343)
T ss_pred EEec------------CCCCCCcCceEEEecc-----ceEEEEecCcchhcccCCCCCccCHhhhhhccCCchhHHHHHH
Confidence 8766 4566999999999864 99999997753 355544 4444333 35789999999999
Q ss_pred HHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCCcEEEEcCCchhHHHHHHHHhCCCc
Q psy1959 154 SRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAWAALTFTNEKSLVNKVLEVSGGKY 232 (296)
Q Consensus 154 ~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~~~g 232 (296)
.++...++|++++|.||+|++|+.+-|+| +.+|++|+.++.+++|.+.++. +|.+..++|++..+..+++.+. .+.|
T Consensus 146 ~ei~~pk~geTv~VSaAsGAvGql~GQ~A-k~~Gc~VVGsaGS~EKv~ll~~~~G~d~afNYK~e~~~~~aL~r~-~P~G 223 (343)
T KOG1196|consen 146 YEICSPKKGETVFVSAASGAVGQLVGQFA-KLMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLSAALKRC-FPEG 223 (343)
T ss_pred HHhcCCCCCCEEEEeeccchhHHHHHHHH-HhcCCEEEEecCChhhhhhhHhccCCccceeccCccCHHHHHHHh-CCCc
Confidence 99999999999999999999999999999 7899999999999999999985 6999999999844777777775 4679
Q ss_pred ccEEEECCCCccHHHHHHHhhccCceEEe----------------ecccceeeeeEEeccc
Q psy1959 233 ANVVFEAVGGEDKTDLIRQKGAWAALTFT----------------NEKSLVNKVLEVSGGK 277 (296)
Q Consensus 233 ~d~vld~~g~~~~~~~~~~lg~~~g~~~~----------------~~~~~~~k~~~i~g~~ 277 (296)
+|+.||++|+..++..+..| ...|++.+ +...++.|++.|.|.-
T Consensus 224 IDiYfeNVGG~~lDavl~nM-~~~gri~~CG~ISqYN~~~~~~~~~l~~ii~Kr~~iqgfl 283 (343)
T KOG1196|consen 224 IDIYFENVGGKMLDAVLLNM-NLHGRIAVCGMISQYNLENPEGLHNLSTIIYKRIRIQGFL 283 (343)
T ss_pred ceEEEeccCcHHHHHHHHhh-hhccceEeeeeehhccccCCccccchhhheeeeEEeeeEE
Confidence 99999999999999999999 55444422 2347888999998844
No 125
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=99.87 E-value=1.1e-20 Score=168.08 Aligned_cols=167 Identities=29% Similarity=0.343 Sum_probs=143.2
Q ss_pred CCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCEEEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhcc
Q psy1959 65 PTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLAD 144 (296)
Q Consensus 65 ~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~ 144 (296)
.++|.++|+|++|+|+++ |+++..+++||+|+++ +.|++|+.++.+.++++|++++..+++.+ .
T Consensus 18 ~~~p~v~g~e~~G~V~~v----------G~~v~~~~~Gd~V~~~-----~~~~~~~~v~~~~~~~ip~~l~~~~aa~~-~ 81 (277)
T cd08255 18 LPLPLPPGYSSVGRVVEV----------GSGVTGFKPGDRVFCF-----GPHAERVVVPANLLVPLPDGLPPERAALT-A 81 (277)
T ss_pred CcCCcccCcceeEEEEEe----------CCCCCCCCCCCEEEec-----CCcceEEEcCHHHeeECcCCCCHHHhHHH-H
Confidence 457899999999999999 9999999999999986 35999999999999999999999999888 8
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCE-EEEEeCCcchHHHHHhcC-CcEEEEcCCchhHHH
Q psy1959 145 SYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAK-VIGVCNSEDKTDLIRQKG-AWAALTFTNEKSLVN 222 (296)
Q Consensus 145 ~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~-Vi~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~ 222 (296)
++.+||+++ ...+++++++++|+|+ |++|++++++| +.+|++ |+++++++++.+.++++| ++.++...+
T Consensus 82 ~~~ta~~~~-~~~~~~~g~~vlI~g~-g~vg~~~i~~a-~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~------ 152 (277)
T cd08255 82 LAATALNGV-RDAEPRLGERVAVVGL-GLVGLLAAQLA-KAAGAREVVGVDPDAARRELAEALGPADPVAADTA------ 152 (277)
T ss_pred HHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCcEEEECCCHHHHHHHHHcCCCccccccch------
Confidence 899999998 4789999999999985 99999999999 668998 999999999999989998 443333221
Q ss_pred HHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE
Q psy1959 223 KVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF 260 (296)
Q Consensus 223 ~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~ 260 (296)
..+.++++|++||+++. .....+++++ +.+|++.
T Consensus 153 ---~~~~~~~~d~vl~~~~~~~~~~~~~~~l-~~~g~~~ 187 (277)
T cd08255 153 ---DEIGGRGADVVIEASGSPSALETALRLL-RDRGRVV 187 (277)
T ss_pred ---hhhcCCCCCEEEEccCChHHHHHHHHHh-cCCcEEE
Confidence 11245689999999886 6888999999 7777774
No 126
>KOG1202|consensus
Probab=99.85 E-value=4.3e-21 Score=188.44 Aligned_cols=213 Identities=21% Similarity=0.292 Sum_probs=181.1
Q ss_pred cEEEEeeeeecChhhHHHHcCCCCCCCCCC-------CcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCEEEEecCC
Q psy1959 39 TIIEKKMMTRINSSDLLLYNGSGDAKPTLP-------LVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKE 111 (296)
Q Consensus 39 evlvkv~~~~i~~~D~~~~~g~~~~~~~~p-------~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~~ 111 (296)
.=+..|-|..||..|+++..|+.+.. .+| .++|-|++|+ .+-|.||++..+
T Consensus 1446 ~e~CtVYYAplNFRDiMLasGkL~~D-AiPG~~a~qdclLGmEFsGR--------------------d~~GrRvM~mvp- 1503 (2376)
T KOG1202|consen 1446 LELCTVYYAPLNFRDIMLASGKLSPD-AIPGDLASQDCLLGMEFSGR--------------------DASGRRVMGMVP- 1503 (2376)
T ss_pred CceeEEEeccccHHHHHHhcCCCCcc-cCCCccchhhheeceeeccc--------------------cCCCcEEEEeee-
Confidence 66888999999999999999987642 223 4688888887 577999998876
Q ss_pred CCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEE
Q psy1959 112 LLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVI 191 (296)
Q Consensus 112 ~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi 191 (296)
--++++.+.++.++++.+|++..+++|++.|+-|+|||++|..++.+++|+++||++++|++|++++.+| .+.|++|+
T Consensus 1504 -AksLATt~l~~rd~lWevP~~WTleeAstVP~VYsTaYYALVvRG~mkkGekiLIHaGsGGVGQAAIaiA-La~G~~VF 1581 (2376)
T KOG1202|consen 1504 -AKSLATTVLASRDFLWEVPSKWTLEEASTVPVVYSTAYYALVVRGQMKKGEKILIHAGSGGVGQAAIAIA-LAHGCTVF 1581 (2376)
T ss_pred -hhhhhhhhhcchhhhhhCCcccchhhcccCceEeeeehhhhhhhccccCCcEEEEecCCCchhHHHHHHH-HHcCCEEE
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999 78999999
Q ss_pred EEeCCcchHHHHHhcCC----cEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceE-Eee----
Q psy1959 192 GVCNSEDKTDLIRQKGA----WAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALT-FTN---- 262 (296)
Q Consensus 192 ~~~~~~~~~~~~~~~g~----~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~-~~~---- 262 (296)
.++.++||++++....+ ..+-+.++ .++.+.++..++++|+|+|++....+.++.+++|| +..|++ .+.
T Consensus 1582 TTVGSaEKRefL~~rFPqLqe~~~~NSRd-tsFEq~vl~~T~GrGVdlVLNSLaeEkLQASiRCL-a~~GRFLEIGKfDL 1659 (2376)
T KOG1202|consen 1582 TTVGSAEKREFLLKRFPQLQETNFANSRD-TSFEQHVLWHTKGRGVDLVLNSLAEEKLQASIRCL-ALHGRFLEIGKFDL 1659 (2376)
T ss_pred EecCcHHHHHHHHHhchhhhhhccccccc-ccHHHHHHHHhcCCCeeeehhhhhHHHHHHHHHHH-HhcCeeeeecceec
Confidence 99999999999976532 22344555 89999999999999999999999999999999999 666655 221
Q ss_pred ------cccceeeeeEEeccc
Q psy1959 263 ------EKSLVNKVLEVSGGK 277 (296)
Q Consensus 263 ------~~~~~~k~~~i~g~~ 277 (296)
....+.|+.++.|-.
T Consensus 1660 SqNspLGMavfLkNvsfHGiL 1680 (2376)
T KOG1202|consen 1660 SQNSPLGMAVFLKNVSFHGIL 1680 (2376)
T ss_pred ccCCcchhhhhhcccceeeee
Confidence 125566667766654
No 127
>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1.1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....
Probab=99.72 E-value=3.7e-17 Score=125.53 Aligned_cols=83 Identities=29% Similarity=0.459 Sum_probs=70.9
Q ss_pred CcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCEEEEecC-------
Q psy1959 38 GTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNK------- 110 (296)
Q Consensus 38 ~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~------- 110 (296)
+||||||.+++||++|++++.|.......+|.++|||++|+|+++ |+++++|++||+|+....
T Consensus 2 ~eVlVkv~a~gic~~D~~~~~g~~~~~~~~p~i~GhE~~G~V~~v----------G~~v~~~~~Gd~V~~~~~~~~~~c~ 71 (109)
T PF08240_consen 2 GEVLVKVRAAGICGSDLHIREGGPPPPPKFPLILGHEGVGVVVAV----------GPGVTDFKVGDRVVVSPNIGCGECE 71 (109)
T ss_dssp TEEEEEEEEEEE-HHHHHHHTTSSSSTSSSSEES-SEEEEEEEEE----------STTTTSSGTT-EEEEESEEETSSSH
T ss_pred CEEEEEEEEeeeCHHHHHHHhhccccCCCCCcccccceeeeeeee----------ccccccccccceeeeecccCccCch
Confidence 499999999999999999999965555788999999999999999 999999999999997331
Q ss_pred ------------------CCCCcccceEeeeCCceEEC
Q psy1959 111 ------------------ELLHGFSDQCVVHTNDVFKI 130 (296)
Q Consensus 111 ------------------~~~g~~~~~~~v~~~~~~~i 130 (296)
...|+|+||+.+|+++++|+
T Consensus 72 ~c~~~~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~v 109 (109)
T PF08240_consen 72 YCLSGRPNLCPNPEVLGLGLDGGFAEYVVVPARNLVPV 109 (109)
T ss_dssp HHHTTTGGGTTTBEETTTSSTCSSBSEEEEEGGGEEEE
T ss_pred hhcCCccccCCCCCEeEcCCCCcccCeEEEehHHEEEC
Confidence 24699999999999999885
No 128
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=99.49 E-value=1.3e-13 Score=108.67 Aligned_cols=105 Identities=28% Similarity=0.416 Sum_probs=92.8
Q ss_pred cHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHH
Q psy1959 173 GLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQ 251 (296)
Q Consensus 173 ~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~ 251 (296)
++|++++|+| +..|++|++++++++|++.++++|++.++++++ .++.+.+++.+++.++|++|||+|. +.++.++++
T Consensus 1 ~vG~~a~q~a-k~~G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~-~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~ 78 (130)
T PF00107_consen 1 GVGLMAIQLA-KAMGAKVIATDRSEEKLELAKELGADHVIDYSD-DDFVEQIRELTGGRGVDVVIDCVGSGDTLQEAIKL 78 (130)
T ss_dssp HHHHHHHHHH-HHTTSEEEEEESSHHHHHHHHHTTESEEEETTT-SSHHHHHHHHTTTSSEEEEEESSSSHHHHHHHHHH
T ss_pred ChHHHHHHHH-HHcCCEEEEEECCHHHHHHHHhhcccccccccc-cccccccccccccccceEEEEecCcHHHHHHHHHH
Confidence 5899999999 678999999999999999999999999999988 7799999999988899999999995 899999999
Q ss_pred hhccCceE-----------EeecccceeeeeEEecccccc
Q psy1959 252 KGAWAALT-----------FTNEKSLVNKVLEVSGGKYAN 280 (296)
Q Consensus 252 lg~~~g~~-----------~~~~~~~~~k~~~i~g~~~~~ 280 (296)
+ +++|++ .++...++.|++++.|+...+
T Consensus 79 l-~~~G~~v~vg~~~~~~~~~~~~~~~~~~~~i~g~~~~~ 117 (130)
T PF00107_consen 79 L-RPGGRIVVVGVYGGDPISFNLMNLMFKEITIRGSWGGS 117 (130)
T ss_dssp E-EEEEEEEEESSTSTSEEEEEHHHHHHTTEEEEEESSGG
T ss_pred h-ccCCEEEEEEccCCCCCCCCHHHHHhCCcEEEEEccCC
Confidence 9 666655 455668889999999988443
No 129
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=98.73 E-value=1.6e-07 Score=89.99 Aligned_cols=116 Identities=17% Similarity=0.193 Sum_probs=84.6
Q ss_pred CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE-EEcCCc------------hhHHHHHH
Q psy1959 159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA-LTFTNE------------KSLVNKVL 225 (296)
Q Consensus 159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~-~~~~~~------------~~~~~~i~ 225 (296)
..++++|+|+|+ |.+|+++++.| +.+|++|+++|.++++++.++++|++.+ ++..+. .++.+..+
T Consensus 162 ~~pg~kVlViGa-G~iGL~Ai~~A-k~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~ 239 (509)
T PRK09424 162 KVPPAKVLVIGA-GVAGLAAIGAA-GSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEM 239 (509)
T ss_pred CcCCCEEEEECC-cHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHH
Confidence 468999999998 99999999999 6789999999999999999999999854 443220 12222223
Q ss_pred HH-hC-CCcccEEEECCCCc------c-HHHHHHHhhccCceEEe-------------eccccee-eeeEEeccc
Q psy1959 226 EV-SG-GKYANVVFEAVGGE------D-KTDLIRQKGAWAALTFT-------------NEKSLVN-KVLEVSGGK 277 (296)
Q Consensus 226 ~~-~~-~~g~d~vld~~g~~------~-~~~~~~~lg~~~g~~~~-------------~~~~~~~-k~~~i~g~~ 277 (296)
+. .+ .+++|++|+|+|.+ . .+.+++.+ +++|.+.. +...++. +++++.|.+
T Consensus 240 ~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~m-kpGgvIVdvg~~~GG~~e~t~~~~~v~~~~gVti~Gv~ 313 (509)
T PRK09424 240 ALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASM-KPGSVIVDLAAENGGNCELTVPGEVVVTDNGVTIIGYT 313 (509)
T ss_pred HHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhc-CCCCEEEEEccCCCCCcccccCccceEeECCEEEEEeC
Confidence 32 21 14799999999963 3 48899999 77776521 1123454 788888865
No 130
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=98.43 E-value=2.2e-06 Score=80.27 Aligned_cols=113 Identities=18% Similarity=0.088 Sum_probs=86.8
Q ss_pred HHHHHHHcC-CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHh
Q psy1959 150 QIVFSRHAK-LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVS 228 (296)
Q Consensus 150 ~~~l~~~~~-~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~ 228 (296)
+.++.+..+ .-+|++|+|.|. |.+|+.+++.+ +.+|++|++++.++.|...+++.|+..+ . ..+.+
T Consensus 189 ~~~i~r~t~~~l~GktVvViG~-G~IG~~va~~a-k~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~------~~e~v---- 255 (413)
T cd00401 189 IDGIKRATDVMIAGKVAVVAGY-GDVGKGCAQSL-RGQGARVIVTEVDPICALQAAMEGYEVM-T------MEEAV---- 255 (413)
T ss_pred HHHHHHhcCCCCCCCEEEEECC-CHHHHHHHHHH-HHCCCEEEEEECChhhHHHHHhcCCEEc-c------HHHHH----
Confidence 444444434 368999999997 99999999999 6789999999999999999999998432 1 11111
Q ss_pred CCCcccEEEECCCC-ccHHHH-HHHhhccCceE--------EeecccceeeeeEEecccc
Q psy1959 229 GGKYANVVFEAVGG-EDKTDL-IRQKGAWAALT--------FTNEKSLVNKVLEVSGGKY 278 (296)
Q Consensus 229 ~~~g~d~vld~~g~-~~~~~~-~~~lg~~~g~~--------~~~~~~~~~k~~~i~g~~~ 278 (296)
.++|++++|.|. ..+... ++++ ++++.+ .++...+..+++++.+++.
T Consensus 256 --~~aDVVI~atG~~~~i~~~~l~~m-k~GgilvnvG~~~~eId~~~L~~~el~i~g~~~ 312 (413)
T cd00401 256 --KEGDIFVTTTGNKDIITGEHFEQM-KDGAIVCNIGHFDVEIDVKGLKENAVEVVNIKP 312 (413)
T ss_pred --cCCCEEEECCCCHHHHHHHHHhcC-CCCcEEEEeCCCCCccCHHHHHhhccEEEEccC
Confidence 268999999998 467765 8888 777776 3455677888999999873
No 131
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=97.90 E-value=7.5e-05 Score=64.37 Aligned_cols=81 Identities=20% Similarity=0.261 Sum_probs=60.7
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCC----cEEEEcCCchhHHHHHHHHhCCC-ccc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGA----WAALTFTNEKSLVNKVLEVSGGK-YAN 234 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~----~~~~~~~~~~~~~~~i~~~~~~~-g~d 234 (296)
+++.++|+|+++|+|.++++.. ...|++|+.+.|++++++.+. +++. ...++..+..+....+..+.... .+|
T Consensus 5 ~~kv~lITGASSGiG~A~A~~l-~~~G~~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iD 83 (246)
T COG4221 5 KGKVALITGASSGIGEATARAL-AEAGAKVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRID 83 (246)
T ss_pred CCcEEEEecCcchHHHHHHHHH-HHCCCeEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCccc
Confidence 4588999999999999999988 568999999999999998886 4562 12345555345555555444333 599
Q ss_pred EEEECCCC
Q psy1959 235 VVFEAVGG 242 (296)
Q Consensus 235 ~vld~~g~ 242 (296)
+.+++.|-
T Consensus 84 iLvNNAGl 91 (246)
T COG4221 84 ILVNNAGL 91 (246)
T ss_pred EEEecCCC
Confidence 99999984
No 132
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=97.70 E-value=0.00042 Score=66.60 Aligned_cols=97 Identities=20% Similarity=0.265 Sum_probs=70.1
Q ss_pred CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE-EEcCC------------chhHHHHHHH
Q psy1959 160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA-LTFTN------------EKSLVNKVLE 226 (296)
Q Consensus 160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~-~~~~~------------~~~~~~~i~~ 226 (296)
.++++++|.|+ |.+|+++++.+ +.+|++|++++++.++++.++++|+..+ ++..+ ..++.+...+
T Consensus 162 vp~akVlViGa-G~iGl~Aa~~a-k~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~ 239 (511)
T TIGR00561 162 VPPAKVLVIGA-GVAGLAAIGAA-NSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEME 239 (511)
T ss_pred CCCCEEEEECC-CHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHH
Confidence 46799999997 99999999999 6789999999999999999999998653 22110 0122322233
Q ss_pred HhC--CCcccEEEECC---CC-c---cHHHHHHHhhccCceE
Q psy1959 227 VSG--GKYANVVFEAV---GG-E---DKTDLIRQKGAWAALT 259 (296)
Q Consensus 227 ~~~--~~g~d~vld~~---g~-~---~~~~~~~~lg~~~g~~ 259 (296)
... .+++|++|+|+ |. . ..+..++.+ ++++.+
T Consensus 240 ~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~M-KpGsvI 280 (511)
T TIGR00561 240 LFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSM-KAGSVI 280 (511)
T ss_pred HHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhC-CCCCEE
Confidence 222 35799999999 65 2 456778888 655544
No 133
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.57 E-value=0.00094 Score=62.92 Aligned_cols=95 Identities=15% Similarity=0.117 Sum_probs=68.7
Q ss_pred HHHHHHHHcCCC-CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHH
Q psy1959 149 AQIVFSRHAKLK-EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEV 227 (296)
Q Consensus 149 a~~~l~~~~~~~-~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~ 227 (296)
+|.++.+..++. .|++++|.|. |.+|+.+++.+ +.+|++|+++++++.+...+...|+. +. +.. +.
T Consensus 198 ~~~ai~rat~~~l~Gk~VlViG~-G~IG~~vA~~l-r~~Ga~ViV~d~dp~ra~~A~~~G~~-v~------~l~----ea 264 (425)
T PRK05476 198 LLDGIKRATNVLIAGKVVVVAGY-GDVGKGCAQRL-RGLGARVIVTEVDPICALQAAMDGFR-VM------TME----EA 264 (425)
T ss_pred hHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHH-HhCCCEEEEEcCCchhhHHHHhcCCE-ec------CHH----HH
Confidence 455554443544 8999999997 99999999999 67899999999988887666666653 11 111 12
Q ss_pred hCCCcccEEEECCCCc-cHH-HHHHHhhccCceE
Q psy1959 228 SGGKYANVVFEAVGGE-DKT-DLIRQKGAWAALT 259 (296)
Q Consensus 228 ~~~~g~d~vld~~g~~-~~~-~~~~~lg~~~g~~ 259 (296)
. .++|+++++.|.. .++ ..+..+ +.++.+
T Consensus 265 l--~~aDVVI~aTG~~~vI~~~~~~~m-K~Gail 295 (425)
T PRK05476 265 A--ELGDIFVTATGNKDVITAEHMEAM-KDGAIL 295 (425)
T ss_pred H--hCCCEEEECCCCHHHHHHHHHhcC-CCCCEE
Confidence 2 2789999999984 455 567777 666655
No 134
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=97.51 E-value=0.00071 Score=59.64 Aligned_cols=83 Identities=20% Similarity=0.229 Sum_probs=56.6
Q ss_pred CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-c----CCcE-E--EEcCCchhHHHHHHHHhC-
Q psy1959 159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-K----GAWA-A--LTFTNEKSLVNKVLEVSG- 229 (296)
Q Consensus 159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~----g~~~-~--~~~~~~~~~~~~i~~~~~- 229 (296)
...+.+++|+|||+++|...+..+ ...|.+++.+.|+++|+..+.+ + +... + .|..+..+......++..
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~l-A~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~ 81 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQL-ARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKER 81 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhc
Confidence 356889999999999999866666 3479999999999999887753 2 2222 2 344442333332323322
Q ss_pred CCcccEEEECCCC
Q psy1959 230 GKYANVVFEAVGG 242 (296)
Q Consensus 230 ~~g~d~vld~~g~ 242 (296)
+..+|+.+++.|-
T Consensus 82 ~~~IdvLVNNAG~ 94 (265)
T COG0300 82 GGPIDVLVNNAGF 94 (265)
T ss_pred CCcccEEEECCCc
Confidence 2479999999984
No 135
>PRK05993 short chain dehydrogenase; Provisional
Probab=97.39 E-value=0.0011 Score=58.82 Aligned_cols=81 Identities=20% Similarity=0.322 Sum_probs=57.4
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE-EEcCCchhHHHHHHHHhC--CCcccEEE
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA-LTFTNEKSLVNKVLEVSG--GKYANVVF 237 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~--~~g~d~vl 237 (296)
.+++++|+|++|++|.+.++.+ ...|++|++++++.++.+.+.+.+...+ .+..+..+....+.+... +..+|+++
T Consensus 3 ~~k~vlItGasggiG~~la~~l-~~~G~~Vi~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~li 81 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARAL-QSDGWRVFATCRKEEDVAALEAEGLEAFQLDYAEPESIAALVAQVLELSGGRLDALF 81 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHCCceEEEccCCCHHHHHHHHHHHHHHcCCCccEEE
Confidence 4678999999999999988877 4479999999999888887777665432 344442333333433321 23689999
Q ss_pred ECCCC
Q psy1959 238 EAVGG 242 (296)
Q Consensus 238 d~~g~ 242 (296)
++.|.
T Consensus 82 ~~Ag~ 86 (277)
T PRK05993 82 NNGAY 86 (277)
T ss_pred ECCCc
Confidence 98873
No 136
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.34 E-value=0.003 Score=59.21 Aligned_cols=95 Identities=17% Similarity=0.087 Sum_probs=67.8
Q ss_pred HHHHHHHHcC-CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHH
Q psy1959 149 AQIVFSRHAK-LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEV 227 (296)
Q Consensus 149 a~~~l~~~~~-~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~ 227 (296)
++.++.+..+ ...|++|+|.|. |.+|+.+++.+ +.+|++|++++.++.+...++..|+.. . . ..+.+
T Consensus 181 ~~~~i~r~t~~~l~Gk~VvViG~-G~IG~~vA~~a-k~~Ga~ViV~d~dp~r~~~A~~~G~~v-~---~---leeal--- 248 (406)
T TIGR00936 181 TIDGILRATNLLIAGKTVVVAGY-GWCGKGIAMRA-RGMGARVIVTEVDPIRALEAAMDGFRV-M---T---MEEAA--- 248 (406)
T ss_pred HHHHHHHhcCCCCCcCEEEEECC-CHHHHHHHHHH-hhCcCEEEEEeCChhhHHHHHhcCCEe-C---C---HHHHH---
Confidence 3344434434 368999999997 99999999999 678999999998888777777667622 1 1 11221
Q ss_pred hCCCcccEEEECCCCc-cHHH-HHHHhhccCceE
Q psy1959 228 SGGKYANVVFEAVGGE-DKTD-LIRQKGAWAALT 259 (296)
Q Consensus 228 ~~~~g~d~vld~~g~~-~~~~-~~~~lg~~~g~~ 259 (296)
++.|++|++.|.. .++. .+..+ +.++.+
T Consensus 249 ---~~aDVVItaTG~~~vI~~~~~~~m-K~Gail 278 (406)
T TIGR00936 249 ---KIGDIFITATGNKDVIRGEHFENM-KDGAIV 278 (406)
T ss_pred ---hcCCEEEECCCCHHHHHHHHHhcC-CCCcEE
Confidence 2679999999984 4554 77777 666655
No 137
>PRK05693 short chain dehydrogenase; Provisional
Probab=97.31 E-value=0.0018 Score=57.27 Aligned_cols=79 Identities=20% Similarity=0.243 Sum_probs=56.5
Q ss_pred cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE-EEcCCchhHHHHHHHHh-CCCcccEEEECC
Q psy1959 163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA-LTFTNEKSLVNKVLEVS-GGKYANVVFEAV 240 (296)
Q Consensus 163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~-~~~g~d~vld~~ 240 (296)
++++|+|++|++|.+.++.+ ...|++|+++++++++.+.+.+.+.... .+..+..++.+.+.+.. ...++|+++++.
T Consensus 2 k~vlItGasggiG~~la~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~a 80 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAF-KAAGYEVWATARKAEDVEALAAAGFTAVQLDVNDGAALARLAEELEAEHGGLDVLINNA 80 (274)
T ss_pred CEEEEecCCChHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 47999999999999988888 4579999999998888777766654332 45544334444444432 123699999999
Q ss_pred CC
Q psy1959 241 GG 242 (296)
Q Consensus 241 g~ 242 (296)
|.
T Consensus 81 g~ 82 (274)
T PRK05693 81 GY 82 (274)
T ss_pred CC
Confidence 83
No 138
>PRK06182 short chain dehydrogenase; Validated
Probab=97.31 E-value=0.0018 Score=57.24 Aligned_cols=81 Identities=25% Similarity=0.281 Sum_probs=57.6
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE-EEcCCchhHHHHHHHHh-CCCcccEEEE
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA-LTFTNEKSLVNKVLEVS-GGKYANVVFE 238 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~-~~~g~d~vld 238 (296)
++++++|+|++|++|.+.++.+ ...|++|+++++++++.+.+.+.+...+ .+..+..++.+.+.+.. ...++|++++
T Consensus 2 ~~k~vlItGasggiG~~la~~l-~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~ 80 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRL-AAQGYTVYGAARRVDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVN 80 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 4678999999999999988887 4579999999998888776665554332 44444344444444332 1237999999
Q ss_pred CCCC
Q psy1959 239 AVGG 242 (296)
Q Consensus 239 ~~g~ 242 (296)
+.|.
T Consensus 81 ~ag~ 84 (273)
T PRK06182 81 NAGY 84 (273)
T ss_pred CCCc
Confidence 9984
No 139
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=97.30 E-value=0.0035 Score=55.10 Aligned_cols=141 Identities=18% Similarity=0.208 Sum_probs=91.3
Q ss_pred CCCCCCCCEEEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHH
Q psy1959 96 EDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLG 175 (296)
Q Consensus 96 v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG 175 (296)
...+++||+++..+. |.+|.. +...++++++++++..+. .+ ........+.. .+.++++|+-.|+ |. |
T Consensus 64 ~~p~~~g~~~~i~p~-----~~~~~~-~~~~~i~i~p~~afgtg~-h~-tt~~~l~~l~~--~~~~~~~VLDiGc-Gs-G 131 (250)
T PRK00517 64 FHPIRIGDRLWIVPS-----WEDPPD-PDEINIELDPGMAFGTGT-HP-TTRLCLEALEK--LVLPGKTVLDVGC-GS-G 131 (250)
T ss_pred CCCEEEcCCEEEECC-----CcCCCC-CCeEEEEECCCCccCCCC-CH-HHHHHHHHHHh--hcCCCCEEEEeCC-cH-H
Confidence 445889999888765 777754 667889999999877654 11 11122233322 2568899999996 55 8
Q ss_pred HHHHHHHHHhCCC-EEEEEeCCcchHHHHHhc----CCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCc----cHH
Q psy1959 176 LAAVDMATKIYKA-KVIGVCNSEDKTDLIRQK----GAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE----DKT 246 (296)
Q Consensus 176 ~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~----~~~ 246 (296)
..++.++ + .|+ +|++++.++...+.+++. +....+.... +...+|+++.+...+ .+.
T Consensus 132 ~l~i~~~-~-~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~------------~~~~fD~Vvani~~~~~~~l~~ 197 (250)
T PRK00517 132 ILAIAAA-K-LGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQ------------GDLKADVIVANILANPLLELAP 197 (250)
T ss_pred HHHHHHH-H-cCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEcc------------CCCCcCEEEEcCcHHHHHHHHH
Confidence 8887766 5 455 699999999888777653 3211111111 011589999877653 345
Q ss_pred HHHHHhhccCceEEeec
Q psy1959 247 DLIRQKGAWAALTFTNE 263 (296)
Q Consensus 247 ~~~~~lg~~~g~~~~~~ 263 (296)
.+.+.| +++|.+.+..
T Consensus 198 ~~~~~L-kpgG~lilsg 213 (250)
T PRK00517 198 DLARLL-KPGGRLILSG 213 (250)
T ss_pred HHHHhc-CCCcEEEEEE
Confidence 667777 8899887653
No 140
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.29 E-value=0.00095 Score=60.64 Aligned_cols=108 Identities=21% Similarity=0.281 Sum_probs=74.3
Q ss_pred CceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCC---CCCcEEEEEcCCCcHHHHHHHHHHHhCC-CEEEEEeCCcchH
Q psy1959 125 NDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKL---KEKQTVLVTAAGGGLGLAAVDMATKIYK-AKVIGVCNSEDKT 200 (296)
Q Consensus 125 ~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~---~~g~~vlI~Ga~g~vG~aa~~la~~~~g-~~Vi~~~~~~~~~ 200 (296)
..++++|+.++.+.++.. .+.+.++.++...... -++.+|+|.|+ |.+|+.+++.++ ..| .+|++++++.++.
T Consensus 139 ~~a~~~~k~vr~et~i~~-~~~sv~~~Av~~a~~~~~~l~~~~V~ViGa-G~iG~~~a~~L~-~~g~~~V~v~~r~~~ra 215 (311)
T cd05213 139 QKAIKVGKRVRTETGISR-GAVSISSAAVELAEKIFGNLKGKKVLVIGA-GEMGELAAKHLA-AKGVAEITIANRTYERA 215 (311)
T ss_pred HHHHHHHHHHhhhcCCCC-CCcCHHHHHHHHHHHHhCCccCCEEEEECc-HHHHHHHHHHHH-HcCCCEEEEEeCCHHHH
Confidence 355778888888877643 5677777776432221 37899999997 999999999984 455 4899999988775
Q ss_pred -HHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccH
Q psy1959 201 -DLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDK 245 (296)
Q Consensus 201 -~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~ 245 (296)
++++++|.. .... .++. +.. ..+|++|.|++.+..
T Consensus 216 ~~la~~~g~~-~~~~---~~~~----~~l--~~aDvVi~at~~~~~ 251 (311)
T cd05213 216 EELAKELGGN-AVPL---DELL----ELL--NEADVVISATGAPHY 251 (311)
T ss_pred HHHHHHcCCe-EEeH---HHHH----HHH--hcCCEEEECCCCCch
Confidence 555667762 2222 1222 222 257999999998544
No 141
>PRK08324 short chain dehydrogenase; Validated
Probab=97.17 E-value=0.0017 Score=65.36 Aligned_cols=114 Identities=23% Similarity=0.248 Sum_probs=74.9
Q ss_pred CcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHH--HcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEE
Q psy1959 114 HGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSR--HAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVI 191 (296)
Q Consensus 114 g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~--~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi 191 (296)
.++.+|..++...++.+ +.++.+++. +.+ ..+..+|++++|+|++|++|+++++.+ ...|++|+
T Consensus 385 ~~~~~~~~l~~~~~f~i-~~~~~e~a~------------l~~~~~~~~l~gk~vLVTGasggIG~~la~~L-~~~Ga~Vv 450 (681)
T PRK08324 385 EAVGRYEPLSEQEAFDI-EYWSLEQAK------------LQRMPKPKPLAGKVALVTGAAGGIGKATAKRL-AAEGACVV 450 (681)
T ss_pred hhcCCccCCChhhhcce-eeehhhhhh------------hhcCCCCcCCCCCEEEEecCCCHHHHHHHHHH-HHCcCEEE
Confidence 45677887887777777 556666664 111 122336899999999999999999888 45799999
Q ss_pred EEeCCcchHHHHHh-cCC--cE---EEEcCCchhHHHHHHHHh-CCCcccEEEECCC
Q psy1959 192 GVCNSEDKTDLIRQ-KGA--WA---ALTFTNEKSLVNKVLEVS-GGKYANVVFEAVG 241 (296)
Q Consensus 192 ~~~~~~~~~~~~~~-~g~--~~---~~~~~~~~~~~~~i~~~~-~~~g~d~vld~~g 241 (296)
+++++.++.+.+.+ ++. .. ..+..+.....+.+.+.. ...++|++|++.|
T Consensus 451 l~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~iDvvI~~AG 507 (681)
T PRK08324 451 LADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGGVDIVVSNAG 507 (681)
T ss_pred EEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 99998887665543 332 11 133344233333333332 1237999999998
No 142
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=97.15 E-value=0.0015 Score=55.01 Aligned_cols=79 Identities=19% Similarity=0.215 Sum_probs=56.7
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCc---EEEEcCCc---hhHHHHHHHHhCCCccc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAW---AALTFTNE---KSLVNKVLEVSGGKYAN 234 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~---~~~~~~~~---~~~~~~i~~~~~~~g~d 234 (296)
-|.+|||+|+++|+|++.++-. ...|-+||+..|++++++.++..-.. .+.+..+. ..+.+++.... -..+
T Consensus 4 tgnTiLITGG~sGIGl~lak~f-~elgN~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~~--P~lN 80 (245)
T COG3967 4 TGNTILITGGASGIGLALAKRF-LELGNTVIICGRNEERLAEAKAENPEIHTEVCDVADRDSRRELVEWLKKEY--PNLN 80 (245)
T ss_pred cCcEEEEeCCcchhhHHHHHHH-HHhCCEEEEecCcHHHHHHHHhcCcchheeeecccchhhHHHHHHHHHhhC--Cchh
Confidence 4789999999999999988877 56799999999999999999876432 23333331 22333333322 2579
Q ss_pred EEEECCCC
Q psy1959 235 VVFEAVGG 242 (296)
Q Consensus 235 ~vld~~g~ 242 (296)
+++++.|-
T Consensus 81 vliNNAGI 88 (245)
T COG3967 81 VLINNAGI 88 (245)
T ss_pred eeeecccc
Confidence 99999983
No 143
>PRK06139 short chain dehydrogenase; Provisional
Probab=97.15 E-value=0.003 Score=57.88 Aligned_cols=81 Identities=20% Similarity=0.260 Sum_probs=54.9
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH----HhcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI----RQKGAWAA---LTFTNEKSLVNKVLEVSG-GKY 232 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~----~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g 232 (296)
++++++|+|+++++|.++++.+ ...|++|+++++++++++.+ ++.+.... .+..+.++..+.+.+... ...
T Consensus 6 ~~k~vlITGAs~GIG~aia~~l-a~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 84 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAF-ARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGR 84 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 5689999999999999988877 45799999999988877544 33454432 344442333333322211 236
Q ss_pred ccEEEECCCC
Q psy1959 233 ANVVFEAVGG 242 (296)
Q Consensus 233 ~d~vld~~g~ 242 (296)
+|+++++.|.
T Consensus 85 iD~lVnnAG~ 94 (330)
T PRK06139 85 IDVWVNNVGV 94 (330)
T ss_pred CCEEEECCCc
Confidence 9999999983
No 144
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.13 E-value=0.006 Score=55.02 Aligned_cols=86 Identities=16% Similarity=0.166 Sum_probs=63.2
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECC
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAV 240 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~ 240 (296)
.+++++|+|. |.+|+.+++.+ +.+|++|++.+++.++...++++|...+ .. . .+.+.. ..+|++|+++
T Consensus 151 ~g~kvlViG~-G~iG~~~a~~L-~~~Ga~V~v~~r~~~~~~~~~~~G~~~~-~~---~----~l~~~l--~~aDiVI~t~ 218 (296)
T PRK08306 151 HGSNVLVLGF-GRTGMTLARTL-KALGANVTVGARKSAHLARITEMGLSPF-HL---S----ELAEEV--GKIDIIFNTI 218 (296)
T ss_pred CCCEEEEECC-cHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHcCCeee-cH---H----HHHHHh--CCCCEEEECC
Confidence 6899999997 99999999999 5689999999999888888888886432 11 1 222332 2689999998
Q ss_pred CCc-cHHHHHHHhhccCceE
Q psy1959 241 GGE-DKTDLIRQKGAWAALT 259 (296)
Q Consensus 241 g~~-~~~~~~~~lg~~~g~~ 259 (296)
... .....++.+ ++++.+
T Consensus 219 p~~~i~~~~l~~~-~~g~vI 237 (296)
T PRK08306 219 PALVLTKEVLSKM-PPEALI 237 (296)
T ss_pred ChhhhhHHHHHcC-CCCcEE
Confidence 764 334566667 555444
No 145
>PRK07904 short chain dehydrogenase; Provisional
Probab=97.11 E-value=0.0049 Score=54.06 Aligned_cols=84 Identities=21% Similarity=0.228 Sum_probs=53.7
Q ss_pred CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch-HHH----HHhcCC-cE-E--EEcCCchhHHHHHHHHhC
Q psy1959 159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK-TDL----IRQKGA-WA-A--LTFTNEKSLVNKVLEVSG 229 (296)
Q Consensus 159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~-~~~----~~~~g~-~~-~--~~~~~~~~~~~~i~~~~~ 229 (296)
+.++.+++|+|++|++|.+.++-+.+..|++|+++++++++ .+. ++..+. .. . .+..+..+..+.+.+...
T Consensus 5 ~~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~ 84 (253)
T PRK07904 5 VGNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFA 84 (253)
T ss_pred cCCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHh
Confidence 45778999999999999998876524335899999988775 433 333332 21 2 333332344444444433
Q ss_pred CCcccEEEECCCC
Q psy1959 230 GKYANVVFEAVGG 242 (296)
Q Consensus 230 ~~g~d~vld~~g~ 242 (296)
...+|+++.+.|.
T Consensus 85 ~g~id~li~~ag~ 97 (253)
T PRK07904 85 GGDVDVAIVAFGL 97 (253)
T ss_pred cCCCCEEEEeeec
Confidence 2479999988875
No 146
>PRK08339 short chain dehydrogenase; Provisional
Probab=97.08 E-value=0.0045 Score=54.60 Aligned_cols=81 Identities=20% Similarity=0.249 Sum_probs=54.1
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-c----CCcE-E--EEcCCchhHHHHHHHHhCCCc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-K----GAWA-A--LTFTNEKSLVNKVLEVSGGKY 232 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~----g~~~-~--~~~~~~~~~~~~i~~~~~~~g 232 (296)
++++++|+|+++++|.++++.+ ...|++|+++++++++.+.+.+ + +... . .+..+..+..+.+.+...-..
T Consensus 7 ~~k~~lItGas~gIG~aia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~ 85 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVL-ARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGE 85 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence 5789999999999999988887 4579999999998777654432 1 2221 1 233342334344443322236
Q ss_pred ccEEEECCCC
Q psy1959 233 ANVVFEAVGG 242 (296)
Q Consensus 233 ~d~vld~~g~ 242 (296)
+|+++++.|.
T Consensus 86 iD~lv~nag~ 95 (263)
T PRK08339 86 PDIFFFSTGG 95 (263)
T ss_pred CcEEEECCCC
Confidence 8999999874
No 147
>PLN02494 adenosylhomocysteinase
Probab=97.08 E-value=0.008 Score=57.17 Aligned_cols=94 Identities=17% Similarity=0.126 Sum_probs=69.3
Q ss_pred HHHHHHHcCC-CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHh
Q psy1959 150 QIVFSRHAKL-KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVS 228 (296)
Q Consensus 150 ~~~l~~~~~~-~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~ 228 (296)
+.++.+..++ -.|++++|.|. |.+|+.+++.+ +.+|++|+++++++.+...+...|+.. . +..+.+
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGy-G~IGr~vA~~a-ka~Ga~VIV~e~dp~r~~eA~~~G~~v-v------~leEal---- 307 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGY-GDVGKGCAAAM-KAAGARVIVTEIDPICALQALMEGYQV-L------TLEDVV---- 307 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECC-CHHHHHHHHHH-HHCCCEEEEEeCCchhhHHHHhcCCee-c------cHHHHH----
Confidence 4444444343 57999999997 99999999999 678999999998887777777777642 1 112222
Q ss_pred CCCcccEEEECCCCc-c-HHHHHHHhhccCceE
Q psy1959 229 GGKYANVVFEAVGGE-D-KTDLIRQKGAWAALT 259 (296)
Q Consensus 229 ~~~g~d~vld~~g~~-~-~~~~~~~lg~~~g~~ 259 (296)
...|+++++.|+. . ....++.| +.++.+
T Consensus 308 --~~ADVVI~tTGt~~vI~~e~L~~M-K~GAiL 337 (477)
T PLN02494 308 --SEADIFVTTTGNKDIIMVDHMRKM-KNNAIV 337 (477)
T ss_pred --hhCCEEEECCCCccchHHHHHhcC-CCCCEE
Confidence 2579999999985 3 37789999 777666
No 148
>PRK05872 short chain dehydrogenase; Provisional
Probab=97.05 E-value=0.004 Score=55.91 Aligned_cols=81 Identities=20% Similarity=0.126 Sum_probs=55.6
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCC--cEE---EEcCCchhHHHHHHHHhC-CCcc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGA--WAA---LTFTNEKSLVNKVLEVSG-GKYA 233 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~--~~~---~~~~~~~~~~~~i~~~~~-~~g~ 233 (296)
++++++|+|++|++|.++++.+ ...|++|+++++++++.+.+. +++. ... .+..+..+..+.+.+... ...+
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 86 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRL-HARGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFGGI 86 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 5789999999999999988888 557999999999888766553 3432 211 344442334343333321 1369
Q ss_pred cEEEECCCC
Q psy1959 234 NVVFEAVGG 242 (296)
Q Consensus 234 d~vld~~g~ 242 (296)
|+++++.|.
T Consensus 87 d~vI~nAG~ 95 (296)
T PRK05872 87 DVVVANAGI 95 (296)
T ss_pred CEEEECCCc
Confidence 999999984
No 149
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=97.04 E-value=0.004 Score=54.71 Aligned_cols=81 Identities=20% Similarity=0.124 Sum_probs=54.6
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhc-CCcE-E--EEcCCchhHHHHHHHHhC-CCcccE
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK-GAWA-A--LTFTNEKSLVNKVLEVSG-GKYANV 235 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~-g~~~-~--~~~~~~~~~~~~i~~~~~-~~g~d~ 235 (296)
++++++|+|++|++|.++++.+ ...|++|+++++++++.+.+++. +... . .+..+..+..+.+.+... -..+|+
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~ 82 (262)
T TIGR03325 4 KGEVVLVTGGASGLGRAIVDRF-VAEGARVAVLDKSAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAAFGKIDC 82 (262)
T ss_pred CCcEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHHHhCCCCE
Confidence 5789999999999999988777 45799999999988877766553 3221 1 233332333343433321 136899
Q ss_pred EEECCCC
Q psy1959 236 VFEAVGG 242 (296)
Q Consensus 236 vld~~g~ 242 (296)
++++.|.
T Consensus 83 li~~Ag~ 89 (262)
T TIGR03325 83 LIPNAGI 89 (262)
T ss_pred EEECCCC
Confidence 9999873
No 150
>PRK07060 short chain dehydrogenase; Provisional
Probab=97.04 E-value=0.0052 Score=53.08 Aligned_cols=78 Identities=19% Similarity=0.239 Sum_probs=53.7
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCCcEE-EEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAWAA-LTFTNEKSLVNKVLEVSGGKYANVVFE 238 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~~~g~d~vld 238 (296)
++++++|+|++|++|..+++.+ ...|++|++++++.++.+.+.+ .+.... .+..+ .+..+.+.+. ..++|++|+
T Consensus 8 ~~~~~lItGa~g~iG~~~a~~l-~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~--~~~~d~vi~ 83 (245)
T PRK07060 8 SGKSVLVTGASSGIGRACAVAL-AQRGARVVAAARNAAALDRLAGETGCEPLRLDVGD-DAAIRAALAA--AGAFDGLVN 83 (245)
T ss_pred CCCEEEEeCCcchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHhCCeEEEecCCC-HHHHHHHHHH--hCCCCEEEE
Confidence 5689999999999999999988 4579999999998877766544 343222 33433 2222222222 236899999
Q ss_pred CCCC
Q psy1959 239 AVGG 242 (296)
Q Consensus 239 ~~g~ 242 (296)
+.|.
T Consensus 84 ~ag~ 87 (245)
T PRK07060 84 CAGI 87 (245)
T ss_pred CCCC
Confidence 9985
No 151
>PRK08017 oxidoreductase; Provisional
Probab=96.99 E-value=0.0059 Score=53.15 Aligned_cols=79 Identities=23% Similarity=0.293 Sum_probs=55.2
Q ss_pred cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE-EEcCCchhHHHHHHHHh--CCCcccEEEEC
Q psy1959 163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA-LTFTNEKSLVNKVLEVS--GGKYANVVFEA 239 (296)
Q Consensus 163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~--~~~g~d~vld~ 239 (296)
++++|+|++|++|.++++.+ ...|++|++++++.++.+.+++.++... .+..+..+..+.+.... .+..+|.++.+
T Consensus 3 k~vlVtGasg~IG~~la~~l-~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~ii~~ 81 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALEL-KRRGYRVLAACRKPDDVARMNSLGFTGILLDLDDPESVERAADEVIALTDNRLYGLFNN 81 (256)
T ss_pred CEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHHHhHHHHhCCCeEEEeecCCHHHHHHHHHHHHHhcCCCCeEEEEC
Confidence 57999999999999999888 4579999999999888888777765433 33433223233233321 12368899988
Q ss_pred CCC
Q psy1959 240 VGG 242 (296)
Q Consensus 240 ~g~ 242 (296)
.|.
T Consensus 82 ag~ 84 (256)
T PRK08017 82 AGF 84 (256)
T ss_pred CCC
Confidence 774
No 152
>PRK08177 short chain dehydrogenase; Provisional
Probab=96.98 E-value=0.0061 Score=52.20 Aligned_cols=78 Identities=21% Similarity=0.248 Sum_probs=53.2
Q ss_pred cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE--EEcCCchhHHHHHHHHhCCCcccEEEECC
Q psy1959 163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA--LTFTNEKSLVNKVLEVSGGKYANVVFEAV 240 (296)
Q Consensus 163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~i~~~~~~~g~d~vld~~ 240 (296)
++++|+|++|++|.+.++.+ ...|++|+++++++++.+.+++++.... .+..+..+..+.+..+ ...++|+++.+.
T Consensus 2 k~vlItG~sg~iG~~la~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~-~~~~id~vi~~a 79 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRL-LERGWQVTATVRGPQQDTALQALPGVHIEKLDMNDPASLDQLLQRL-QGQRFDLLFVNA 79 (225)
T ss_pred CEEEEeCCCchHHHHHHHHH-HhCCCEEEEEeCCCcchHHHHhccccceEEcCCCCHHHHHHHHHHh-hcCCCCEEEEcC
Confidence 47999999999999987777 4479999999998887766665432222 3333423333333333 334799999988
Q ss_pred CC
Q psy1959 241 GG 242 (296)
Q Consensus 241 g~ 242 (296)
|.
T Consensus 80 g~ 81 (225)
T PRK08177 80 GI 81 (225)
T ss_pred cc
Confidence 74
No 153
>PRK07825 short chain dehydrogenase; Provisional
Probab=96.97 E-value=0.0048 Score=54.46 Aligned_cols=81 Identities=20% Similarity=0.156 Sum_probs=54.5
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcC-CcE-EEEcCCchhHHHHHHHHhC-CCcccEE
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKG-AWA-ALTFTNEKSLVNKVLEVSG-GKYANVV 236 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g-~~~-~~~~~~~~~~~~~i~~~~~-~~g~d~v 236 (296)
.+.+++|+|++|++|..+++.+ ...|++|+++++++++.+.+. +++ ... ..+..+..++.+.+.+... ..++|++
T Consensus 4 ~~~~ilVtGasggiG~~la~~l-~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~l 82 (273)
T PRK07825 4 RGKVVAITGGARGIGLATARAL-AALGARVAIGDLDEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEADLGPIDVL 82 (273)
T ss_pred CCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 3678999999999999988877 447999999999888776553 333 211 2344443444443443321 1368999
Q ss_pred EECCCC
Q psy1959 237 FEAVGG 242 (296)
Q Consensus 237 ld~~g~ 242 (296)
+++.|.
T Consensus 83 i~~ag~ 88 (273)
T PRK07825 83 VNNAGV 88 (273)
T ss_pred EECCCc
Confidence 999884
No 154
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=96.97 E-value=0.0052 Score=53.93 Aligned_cols=81 Identities=22% Similarity=0.147 Sum_probs=55.1
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCCc-EE--EEcCCchhHHHHHHHHhC-CCcccE
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAW-AA--LTFTNEKSLVNKVLEVSG-GKYANV 235 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~-~~--~~~~~~~~~~~~i~~~~~-~~g~d~ 235 (296)
++++++|+|+++++|.++++.+ ...|++|+++++++++.+.+.+ .+.. .. .+..+..+....+.+... ...+|+
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~ 83 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERF-LAEGARVAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDAFGKLDC 83 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHhcCCCCE
Confidence 5789999999999999988888 4579999999998887776654 3321 11 233332334444443321 236899
Q ss_pred EEECCCC
Q psy1959 236 VFEAVGG 242 (296)
Q Consensus 236 vld~~g~ 242 (296)
++++.|.
T Consensus 84 li~~ag~ 90 (263)
T PRK06200 84 FVGNAGI 90 (263)
T ss_pred EEECCCC
Confidence 9999884
No 155
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.97 E-value=0.015 Score=50.02 Aligned_cols=81 Identities=20% Similarity=0.202 Sum_probs=53.8
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hc---CCcEEE--EcCCchhHHHHHHHHhC-CCcc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QK---GAWAAL--TFTNEKSLVNKVLEVSG-GKYA 233 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~---g~~~~~--~~~~~~~~~~~i~~~~~-~~g~ 233 (296)
++++++|+|++|++|..+++.+ ...|++|+.+++++++.+.+. +. +....+ +..+..+..+.+.+... -.++
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 82 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFA-LKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAI 82 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 4689999999999999999999 557999999999888776552 22 221222 22332333333333211 1368
Q ss_pred cEEEECCCC
Q psy1959 234 NVVFEAVGG 242 (296)
Q Consensus 234 d~vld~~g~ 242 (296)
|.++.+.|.
T Consensus 83 d~ii~~ag~ 91 (238)
T PRK05786 83 DGLVVTVGG 91 (238)
T ss_pred CEEEEcCCC
Confidence 999998874
No 156
>PRK07831 short chain dehydrogenase; Provisional
Probab=96.91 E-value=0.0078 Score=52.79 Aligned_cols=83 Identities=24% Similarity=0.154 Sum_probs=54.2
Q ss_pred CCCCcEEEEEcCCC-cHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-----cCCcEE----EEcCCchhHHHHHHHHh
Q psy1959 159 LKEKQTVLVTAAGG-GLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-----KGAWAA----LTFTNEKSLVNKVLEVS 228 (296)
Q Consensus 159 ~~~g~~vlI~Ga~g-~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-----~g~~~~----~~~~~~~~~~~~i~~~~ 228 (296)
+.++++++|+|++| ++|.++++.+ ...|++|+++++++++.+...+ .+...+ .+..+..+..+.+.+..
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l-~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 92 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRA-LEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAV 92 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHH
Confidence 34578999999986 8999988888 5579999999988776654432 342222 23333233333333332
Q ss_pred C-CCcccEEEECCCC
Q psy1959 229 G-GKYANVVFEAVGG 242 (296)
Q Consensus 229 ~-~~g~d~vld~~g~ 242 (296)
. ...+|+++++.|.
T Consensus 93 ~~~g~id~li~~ag~ 107 (262)
T PRK07831 93 ERLGRLDVLVNNAGL 107 (262)
T ss_pred HHcCCCCEEEECCCC
Confidence 1 1368999999984
No 157
>PRK06057 short chain dehydrogenase; Provisional
Probab=96.88 E-value=0.0083 Score=52.37 Aligned_cols=81 Identities=16% Similarity=0.171 Sum_probs=54.8
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCcE-EEEcCCchhHHHHHHHHh-CCCcccEEE
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAWA-ALTFTNEKSLVNKVLEVS-GGKYANVVF 237 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~-~~~~~~~~~~~~~i~~~~-~~~g~d~vl 237 (296)
++++++|+|++|++|.++++.+ ...|++|+++++++.+.+.+. +++... ..+..+..+..+.+.+.. ....+|+++
T Consensus 6 ~~~~vlItGasggIG~~~a~~l-~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi 84 (255)
T PRK06057 6 AGRVAVITGGGSGIGLATARRL-AAEGATVVVGDIDPEAGKAAADEVGGLFVPTDVTDEDAVNALFDTAAETYGSVDIAF 84 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHHcCCcEEEeeCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 5789999999999999988888 457999999998877765543 344322 234444233333333332 123689999
Q ss_pred ECCCC
Q psy1959 238 EAVGG 242 (296)
Q Consensus 238 d~~g~ 242 (296)
.+.|.
T Consensus 85 ~~ag~ 89 (255)
T PRK06057 85 NNAGI 89 (255)
T ss_pred ECCCc
Confidence 98874
No 158
>PRK12742 oxidoreductase; Provisional
Probab=96.85 E-value=0.0098 Score=51.09 Aligned_cols=78 Identities=21% Similarity=0.225 Sum_probs=50.1
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC-CcchHHHH-HhcCCcEE-EEcCCchhHHHHHHHHhCCCcccEEE
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN-SEDKTDLI-RQKGAWAA-LTFTNEKSLVNKVLEVSGGKYANVVF 237 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~-~~~~~~~~-~~~g~~~~-~~~~~~~~~~~~i~~~~~~~g~d~vl 237 (296)
++++++|+|++|++|.++++.+ ...|++|+.+.+ ++++.+.+ .+.+.... .+..+...+.+.+.+ ...+|+++
T Consensus 5 ~~k~vlItGasggIG~~~a~~l-~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~---~~~id~li 80 (237)
T PRK12742 5 TGKKVLVLGGSRGIGAAIVRRF-VTDGANVRFTYAGSKDAAERLAQETGATAVQTDSADRDAVIDVVRK---SGALDILV 80 (237)
T ss_pred CCCEEEEECCCChHHHHHHHHH-HHCCCEEEEecCCCHHHHHHHHHHhCCeEEecCCCCHHHHHHHHHH---hCCCcEEE
Confidence 4789999999999999988887 457999887754 44444444 34454322 233332233333322 23689999
Q ss_pred ECCCC
Q psy1959 238 EAVGG 242 (296)
Q Consensus 238 d~~g~ 242 (296)
++.|.
T Consensus 81 ~~ag~ 85 (237)
T PRK12742 81 VNAGI 85 (237)
T ss_pred ECCCC
Confidence 99874
No 159
>PRK09072 short chain dehydrogenase; Provisional
Probab=96.84 E-value=0.0082 Score=52.67 Aligned_cols=81 Identities=20% Similarity=0.227 Sum_probs=52.8
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhc---CCcE-E--EEcCCchhHHHHHHHHhCCCccc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK---GAWA-A--LTFTNEKSLVNKVLEVSGGKYAN 234 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~---g~~~-~--~~~~~~~~~~~~i~~~~~~~g~d 234 (296)
++.+++|+|++|++|...+..+ ...|++|+++++++++.+.+... +... . .+..+..+..+.+........+|
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id 82 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEAL-AAAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGIN 82 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCC
Confidence 4678999999999999988877 45799999999988776655421 2111 1 23333233333333222224689
Q ss_pred EEEECCCC
Q psy1959 235 VVFEAVGG 242 (296)
Q Consensus 235 ~vld~~g~ 242 (296)
+++.+.|.
T Consensus 83 ~lv~~ag~ 90 (263)
T PRK09072 83 VLINNAGV 90 (263)
T ss_pred EEEECCCC
Confidence 99999885
No 160
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.84 E-value=0.0034 Score=61.78 Aligned_cols=79 Identities=18% Similarity=0.182 Sum_probs=56.5
Q ss_pred CCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCC---------------------cchHHHHHhcCCcEEEEcCC
Q psy1959 158 KLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNS---------------------EDKTDLIRQKGAWAALTFTN 216 (296)
Q Consensus 158 ~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~---------------------~~~~~~~~~~g~~~~~~~~~ 216 (296)
..++|++|+|.|+ |+.|+++++.+ +..|++|++++.. +++++.++++|++..++...
T Consensus 133 ~~~~g~~V~VIGa-GpaGL~aA~~l-~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~ 210 (564)
T PRK12771 133 APDTGKRVAVIGG-GPAGLSAAYHL-RRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRV 210 (564)
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHH-HHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence 4678999999997 99999999999 5689999998843 34567778889876654321
Q ss_pred chhH-HHHHHHHhCCCcccEEEECCCCc
Q psy1959 217 EKSL-VNKVLEVSGGKYANVVFEAVGGE 243 (296)
Q Consensus 217 ~~~~-~~~i~~~~~~~g~d~vld~~g~~ 243 (296)
..+. .+.+ ..++|.+|+++|..
T Consensus 211 ~~~~~~~~~-----~~~~D~Vi~AtG~~ 233 (564)
T PRK12771 211 GEDITLEQL-----EGEFDAVFVAIGAQ 233 (564)
T ss_pred CCcCCHHHH-----HhhCCEEEEeeCCC
Confidence 0111 1111 12689999999973
No 161
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.83 E-value=0.0062 Score=52.71 Aligned_cols=81 Identities=17% Similarity=0.179 Sum_probs=52.7
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cC--CcE-E--EEcCCchhHHHHHHHHh-CCCcc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KG--AWA-A--LTFTNEKSLVNKVLEVS-GGKYA 233 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g--~~~-~--~~~~~~~~~~~~i~~~~-~~~g~ 233 (296)
++.+++|+|++|++|..+++.+ ...|++|++++++.++.+.+.. +. ... . .+..+..++...+.+.. ....+
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 82 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRF-AAEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFGSV 82 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 4679999999999999888777 4579999999998877655432 22 211 1 22333233333333321 12368
Q ss_pred cEEEECCCC
Q psy1959 234 NVVFEAVGG 242 (296)
Q Consensus 234 d~vld~~g~ 242 (296)
|+++.+.|.
T Consensus 83 d~vi~~ag~ 91 (251)
T PRK07231 83 DILVNNAGT 91 (251)
T ss_pred CEEEECCCC
Confidence 999999885
No 162
>PRK07024 short chain dehydrogenase; Provisional
Probab=96.82 E-value=0.0072 Score=52.86 Aligned_cols=80 Identities=16% Similarity=0.131 Sum_probs=52.5
Q ss_pred CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCC--cE-E--EEcCCchhHHHHHHHHhC-CCccc
Q psy1959 162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGA--WA-A--LTFTNEKSLVNKVLEVSG-GKYAN 234 (296)
Q Consensus 162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~--~~-~--~~~~~~~~~~~~i~~~~~-~~g~d 234 (296)
+.+++|+|++|++|.+.++.+ ...|++|++++++.++.+.+.+ ... .. . .+..+..+..+.+.+... ...+|
T Consensus 2 ~~~vlItGas~gIG~~la~~l-~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id 80 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREY-ARQGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLPD 80 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCC
Confidence 468999999999999988877 4479999999998877665543 211 11 1 233332344444443322 12589
Q ss_pred EEEECCCC
Q psy1959 235 VVFEAVGG 242 (296)
Q Consensus 235 ~vld~~g~ 242 (296)
+++.+.|.
T Consensus 81 ~lv~~ag~ 88 (257)
T PRK07024 81 VVIANAGI 88 (257)
T ss_pred EEEECCCc
Confidence 99999874
No 163
>PRK06180 short chain dehydrogenase; Provisional
Probab=96.82 E-value=0.0066 Score=53.84 Aligned_cols=81 Identities=22% Similarity=0.192 Sum_probs=54.5
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCc-E-E--EEcCCchhHHHHHHHHhC-CCcccE
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAW-A-A--LTFTNEKSLVNKVLEVSG-GKYANV 235 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~-~-~--~~~~~~~~~~~~i~~~~~-~~g~d~ 235 (296)
.+++++|+|++|++|.+.++.+ ...|++|++++++.++.+.+.+.... . . .+..+.....+.+.+... -..+|+
T Consensus 3 ~~~~vlVtGasggiG~~la~~l-~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~d~ 81 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAA-LAAGHRVVGTVRSEAARADFEALHPDRALARLLDVTDFDAIDAVVADAEATFGPIDV 81 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHH-HhCcCEEEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHHHhCCCCE
Confidence 4578999999999999988877 45799999999988877666553221 1 1 233332333333333221 125899
Q ss_pred EEECCCC
Q psy1959 236 VFEAVGG 242 (296)
Q Consensus 236 vld~~g~ 242 (296)
++++.|.
T Consensus 82 vv~~ag~ 88 (277)
T PRK06180 82 LVNNAGY 88 (277)
T ss_pred EEECCCc
Confidence 9999885
No 164
>PRK06953 short chain dehydrogenase; Provisional
Probab=96.82 E-value=0.012 Score=50.31 Aligned_cols=78 Identities=22% Similarity=0.263 Sum_probs=54.0
Q ss_pred cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcE-EEEcCCchhHHHHHHHHhCCCcccEEEECCC
Q psy1959 163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWA-ALTFTNEKSLVNKVLEVSGGKYANVVFEAVG 241 (296)
Q Consensus 163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g 241 (296)
++++|+|++|++|..+++.+ ...|++|++++++.++.+.++..+... ..+..+.....+.+.+. ....+|+++.+.|
T Consensus 2 ~~vlvtG~sg~iG~~la~~L-~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~-~~~~~d~vi~~ag 79 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQY-RADGWRVIATARDAAALAALQALGAEALALDVADPASVAGLAWKL-DGEALDAAVYVAG 79 (222)
T ss_pred ceEEEEcCCCchhHHHHHHH-HhCCCEEEEEECCHHHHHHHHhccceEEEecCCCHHHHHHHHHHh-cCCCCCEEEECCC
Confidence 47899999999999988876 446999999999888777776665432 23344423333322233 3347999999887
Q ss_pred C
Q psy1959 242 G 242 (296)
Q Consensus 242 ~ 242 (296)
.
T Consensus 80 ~ 80 (222)
T PRK06953 80 V 80 (222)
T ss_pred c
Confidence 5
No 165
>PRK06196 oxidoreductase; Provisional
Probab=96.81 E-value=0.0084 Score=54.32 Aligned_cols=81 Identities=19% Similarity=0.161 Sum_probs=53.5
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcC-CcE-EEEcCCchhHHHHHHHHhC-CCcccEE
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKG-AWA-ALTFTNEKSLVNKVLEVSG-GKYANVV 236 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g-~~~-~~~~~~~~~~~~~i~~~~~-~~g~d~v 236 (296)
.+++++|+|++|++|.+++..+ ...|++|++++++.++.+.+. ++. ... ..+..+..+..+.+.+... ..++|++
T Consensus 25 ~~k~vlITGasggIG~~~a~~L-~~~G~~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~l 103 (315)
T PRK06196 25 SGKTAIVTGGYSGLGLETTRAL-AQAGAHVIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAERFLDSGRRIDIL 103 (315)
T ss_pred CCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHHHHhcCCCCCEE
Confidence 5689999999999999988777 457999999999877765443 221 211 1333442333333433321 2479999
Q ss_pred EECCCC
Q psy1959 237 FEAVGG 242 (296)
Q Consensus 237 ld~~g~ 242 (296)
+++.|.
T Consensus 104 i~nAg~ 109 (315)
T PRK06196 104 INNAGV 109 (315)
T ss_pred EECCCC
Confidence 999873
No 166
>PLN02780 ketoreductase/ oxidoreductase
Probab=96.80 E-value=0.0099 Score=54.17 Aligned_cols=81 Identities=20% Similarity=0.181 Sum_probs=53.7
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----c-C-CcE---EEEcCC-chhHHHHHHHHhCC
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----K-G-AWA---ALTFTN-EKSLVNKVLEVSGG 230 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~-g-~~~---~~~~~~-~~~~~~~i~~~~~~ 230 (296)
.|++++|+|+++++|.+.+... ...|++|+++++++++.+.+.+ . + ... ..+..+ ..+..+.+.+..++
T Consensus 52 ~g~~~lITGAs~GIG~alA~~L-a~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~ 130 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQL-ARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEG 130 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHH-HHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcC
Confidence 5899999999999999877666 3469999999999888765432 1 1 111 123322 12334445555444
Q ss_pred CcccEEEECCCC
Q psy1959 231 KYANVVFEAVGG 242 (296)
Q Consensus 231 ~g~d~vld~~g~ 242 (296)
..+|+++++.|.
T Consensus 131 ~didilVnnAG~ 142 (320)
T PLN02780 131 LDVGVLINNVGV 142 (320)
T ss_pred CCccEEEEecCc
Confidence 457799998874
No 167
>PRK08267 short chain dehydrogenase; Provisional
Probab=96.77 E-value=0.0096 Score=52.09 Aligned_cols=79 Identities=19% Similarity=0.213 Sum_probs=53.6
Q ss_pred cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cC-Cc-E--EEEcCCchhHHHHHHHHhC--CCcccE
Q psy1959 163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KG-AW-A--ALTFTNEKSLVNKVLEVSG--GKYANV 235 (296)
Q Consensus 163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g-~~-~--~~~~~~~~~~~~~i~~~~~--~~g~d~ 235 (296)
++++|+|++|++|...++.+ ...|++|++++++.++.+.+.+ .+ .. . ..+..+..+..+.+.+... ...+|+
T Consensus 2 k~vlItGasg~iG~~la~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~ 80 (260)
T PRK08267 2 KSIFITGAASGIGRATALLF-AAEGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLDV 80 (260)
T ss_pred cEEEEeCCCchHHHHHHHHH-HHCCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCE
Confidence 47999999999999988877 4479999999998887776644 22 11 1 2344442344444443321 246899
Q ss_pred EEECCCC
Q psy1959 236 VFEAVGG 242 (296)
Q Consensus 236 vld~~g~ 242 (296)
++.+.|.
T Consensus 81 vi~~ag~ 87 (260)
T PRK08267 81 LFNNAGI 87 (260)
T ss_pred EEECCCC
Confidence 9999985
No 168
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.77 E-value=0.0074 Score=47.81 Aligned_cols=72 Identities=21% Similarity=0.311 Sum_probs=51.0
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHh-cCC--cEEEEcCCchhHHHHHHHHhCCCcccEE
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQ-KGA--WAALTFTNEKSLVNKVLEVSGGKYANVV 236 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~-~g~--~~~~~~~~~~~~~~~i~~~~~~~g~d~v 236 (296)
++.+++|.|+ |+.|.+++..+ ...|+ +|+++.|+.+|.+.+.+ ++. .....+.+ +.+.+ ..+|++
T Consensus 11 ~~~~vlviGa-Gg~ar~v~~~L-~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~---~~~~~------~~~Div 79 (135)
T PF01488_consen 11 KGKRVLVIGA-GGAARAVAAAL-AALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLED---LEEAL------QEADIV 79 (135)
T ss_dssp TTSEEEEESS-SHHHHHHHHHH-HHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGG---HCHHH------HTESEE
T ss_pred CCCEEEEECC-HHHHHHHHHHH-HHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHH---HHHHH------hhCCeE
Confidence 6899999997 99999998888 45688 59999999998877654 422 12344433 21111 268999
Q ss_pred EECCCCc
Q psy1959 237 FEAVGGE 243 (296)
Q Consensus 237 ld~~g~~ 243 (296)
++|++..
T Consensus 80 I~aT~~~ 86 (135)
T PF01488_consen 80 INATPSG 86 (135)
T ss_dssp EE-SSTT
T ss_pred EEecCCC
Confidence 9998863
No 169
>PRK06949 short chain dehydrogenase; Provisional
Probab=96.74 E-value=0.012 Score=51.27 Aligned_cols=81 Identities=22% Similarity=0.269 Sum_probs=54.2
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhc----CCc-EE--EEcCCchhHHHHHHHHh-CCCc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK----GAW-AA--LTFTNEKSLVNKVLEVS-GGKY 232 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~----g~~-~~--~~~~~~~~~~~~i~~~~-~~~g 232 (296)
.+++++|+|++|++|.+++..+ ...|++|+++++++++.+.+.+. +.. .. .+..+..+..+.+.+.. ....
T Consensus 8 ~~k~ilItGasg~IG~~~a~~l-~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 86 (258)
T PRK06949 8 EGKVALVTGASSGLGARFAQVL-AQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEAGT 86 (258)
T ss_pred CCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 5789999999999999988888 45799999999988876555331 211 12 23333233433333321 1236
Q ss_pred ccEEEECCCC
Q psy1959 233 ANVVFEAVGG 242 (296)
Q Consensus 233 ~d~vld~~g~ 242 (296)
+|+++++.|.
T Consensus 87 ~d~li~~ag~ 96 (258)
T PRK06949 87 IDILVNNSGV 96 (258)
T ss_pred CCEEEECCCC
Confidence 8999999984
No 170
>PRK12828 short chain dehydrogenase; Provisional
Probab=96.73 E-value=0.012 Score=50.37 Aligned_cols=81 Identities=16% Similarity=0.166 Sum_probs=51.8
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHH----HHhcCCcEE-EEcCCchhHHHHHHHHhC-CCccc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDL----IRQKGAWAA-LTFTNEKSLVNKVLEVSG-GKYAN 234 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~----~~~~g~~~~-~~~~~~~~~~~~i~~~~~-~~g~d 234 (296)
++++++|+|++|++|..+++.+ ...|++|+.++++.++... ++..+...+ .+..+..+..+.+.+... -.++|
T Consensus 6 ~~k~vlItGatg~iG~~la~~l-~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 84 (239)
T PRK12828 6 QGKVVAITGGFGGLGRATAAWL-AARGARVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVNRQFGRLD 84 (239)
T ss_pred CCCEEEEECCCCcHhHHHHHHH-HHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHHHhCCcC
Confidence 4789999999999999988877 4569999999987765432 222333221 333332333333333221 12689
Q ss_pred EEEECCCC
Q psy1959 235 VVFEAVGG 242 (296)
Q Consensus 235 ~vld~~g~ 242 (296)
+++.+.|.
T Consensus 85 ~vi~~ag~ 92 (239)
T PRK12828 85 ALVNIAGA 92 (239)
T ss_pred EEEECCcc
Confidence 99998874
No 171
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.73 E-value=0.011 Score=51.05 Aligned_cols=81 Identities=16% Similarity=0.168 Sum_probs=53.3
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG-GKY 232 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g 232 (296)
++++++|+|++|++|+.+++.+ ...|++|+.+++++++.+.+. +.+.... .+..+..+..+.+..... ...
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l-~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYL-AQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFGQ 82 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 5789999999999999999888 447999999998877655442 2343322 222332333333333321 136
Q ss_pred ccEEEECCCC
Q psy1959 233 ANVVFEAVGG 242 (296)
Q Consensus 233 ~d~vld~~g~ 242 (296)
+|.+|.+.|.
T Consensus 83 id~vi~~ag~ 92 (253)
T PRK08217 83 LNGLINNAGI 92 (253)
T ss_pred CCEEEECCCc
Confidence 8999999883
No 172
>PRK06841 short chain dehydrogenase; Provisional
Probab=96.73 E-value=0.01 Score=51.64 Aligned_cols=81 Identities=19% Similarity=0.189 Sum_probs=52.8
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcE----EEEcCCchhHHHHHHHHhC-CCcccE
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWA----ALTFTNEKSLVNKVLEVSG-GKYANV 235 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~~~i~~~~~-~~g~d~ 235 (296)
++++++|+|++|++|..+++.+ ...|++|+.++++++..+...+..... ..+..+..+....+.+... ...+|+
T Consensus 14 ~~k~vlItGas~~IG~~la~~l-~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~ 92 (255)
T PRK06841 14 SGKVAVVTGGASGIGHAIAELF-AAKGARVALLDRSEDVAEVAAQLLGGNAKGLVCDVSDSQSVEAAVAAVISAFGRIDI 92 (255)
T ss_pred CCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence 5789999999999999988877 457999999998876555444432111 1333332333333333211 136899
Q ss_pred EEECCCC
Q psy1959 236 VFEAVGG 242 (296)
Q Consensus 236 vld~~g~ 242 (296)
++.+.|.
T Consensus 93 vi~~ag~ 99 (255)
T PRK06841 93 LVNSAGV 99 (255)
T ss_pred EEECCCC
Confidence 9999984
No 173
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=96.72 E-value=0.0089 Score=58.29 Aligned_cols=81 Identities=17% Similarity=0.224 Sum_probs=56.1
Q ss_pred HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh---------cCC-----cEE--EEcCCch
Q psy1959 155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ---------KGA-----WAA--LTFTNEK 218 (296)
Q Consensus 155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~---------~g~-----~~~--~~~~~~~ 218 (296)
...+.+.|++++|+|++|++|.++++.+ ...|++|++++++.++.+.+.+ .|. ..+ .+..+
T Consensus 73 ~~~~~~~gKvVLVTGATGgIG~aLAr~L-Lk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD-- 149 (576)
T PLN03209 73 KELDTKDEDLAFVAGATGKVGSRTVREL-LKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEK-- 149 (576)
T ss_pred cccccCCCCEEEEECCCCHHHHHHHHHH-HHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCC--
Confidence 4556778999999999999999988887 4579999999998887754432 121 111 22222
Q ss_pred hHHHHHHHHhCCCcccEEEECCCC
Q psy1959 219 SLVNKVLEVSGGKYANVVFEAVGG 242 (296)
Q Consensus 219 ~~~~~i~~~~~~~g~d~vld~~g~ 242 (296)
.+.+.+.. .++|++|++.|.
T Consensus 150 --~esI~~aL--ggiDiVVn~AG~ 169 (576)
T PLN03209 150 --PDQIGPAL--GNASVVICCIGA 169 (576)
T ss_pred --HHHHHHHh--cCCCEEEEcccc
Confidence 22344443 369999999985
No 174
>PRK08265 short chain dehydrogenase; Provisional
Probab=96.68 E-value=0.0099 Score=52.22 Aligned_cols=81 Identities=16% Similarity=0.114 Sum_probs=54.0
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCcE-E--EEcCCchhHHHHHHHHhC-CCcccE
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAWA-A--LTFTNEKSLVNKVLEVSG-GKYANV 235 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~-~--~~~~~~~~~~~~i~~~~~-~~g~d~ 235 (296)
++++++|+|+++++|.++++.+ ...|++|++++++.++.+.+. +.+... . .+..+..+..+.+.+... -..+|+
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~ 83 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARAL-VAAGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFGRVDI 83 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence 4689999999999999988887 447999999999887665554 344321 1 233332333333333321 136899
Q ss_pred EEECCCC
Q psy1959 236 VFEAVGG 242 (296)
Q Consensus 236 vld~~g~ 242 (296)
++.+.|.
T Consensus 84 lv~~ag~ 90 (261)
T PRK08265 84 LVNLACT 90 (261)
T ss_pred EEECCCC
Confidence 9999874
No 175
>PRK07062 short chain dehydrogenase; Provisional
Probab=96.68 E-value=0.014 Score=51.29 Aligned_cols=81 Identities=21% Similarity=0.230 Sum_probs=53.6
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----c--CCcE---EEEcCCchhHHHHHHHHhC-C
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----K--GAWA---ALTFTNEKSLVNKVLEVSG-G 230 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~--g~~~---~~~~~~~~~~~~~i~~~~~-~ 230 (296)
.+++++|+|+++++|.+.++.+ ...|++|+.+++++++.+.+.+ . +... ..+..+..+..+.+.+... -
T Consensus 7 ~~k~~lItGas~giG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T PRK07062 7 EGRVAVVTGGSSGIGLATVELL-LEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF 85 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHH-HHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 5789999999999999988888 4579999999998877654432 1 1111 1234442333333333321 1
Q ss_pred CcccEEEECCCC
Q psy1959 231 KYANVVFEAVGG 242 (296)
Q Consensus 231 ~g~d~vld~~g~ 242 (296)
..+|+++++.|.
T Consensus 86 g~id~li~~Ag~ 97 (265)
T PRK07062 86 GGVDMLVNNAGQ 97 (265)
T ss_pred CCCCEEEECCCC
Confidence 368999999984
No 176
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.67 E-value=0.0038 Score=59.16 Aligned_cols=143 Identities=19% Similarity=0.202 Sum_probs=87.0
Q ss_pred cCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCEEE-Eec---------C-----CCCCcccceEeeeCCceEECCCCC
Q psy1959 70 VPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVL-ALN---------K-----ELLHGFSDQCVVHTNDVFKIPEKM 134 (296)
Q Consensus 70 ~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V~-~~~---------~-----~~~g~~~~~~~v~~~~~~~iP~~~ 134 (296)
.-|+|+++.+.+| +.+.+..-+|..-+ +-. . ..++.|++. +++|+.+
T Consensus 91 ~~g~ea~~hl~~V----------~~GldS~V~GE~qIlgQvk~a~~~a~~~g~~g~~l~~lf~~a--------~~~~k~v 152 (423)
T PRK00045 91 HEGEEAVRHLFRV----------ASGLDSMVLGEPQILGQVKDAYALAQEAGTVGTILNRLFQKA--------FSVAKRV 152 (423)
T ss_pred cCCHHHHHHHHHH----------HhhhhhhhcCChHHHHHHHHHHHHHHHcCCchHHHHHHHHHH--------HHHHhhH
Confidence 4699999999999 55555455555322 100 0 011233333 3344444
Q ss_pred CHHHHhhhccHHHHHHHHHHHHcC---CCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHH-HHHhcCCc
Q psy1959 135 TFEHAASLADSYSTAQIVFSRHAK---LKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTD-LIRQKGAW 209 (296)
Q Consensus 135 ~~~~aa~l~~~~~ta~~~l~~~~~---~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~-~~~~~g~~ 209 (296)
..+.. ....+.++++.++..... -.++++|+|+|+ |.+|.++++.+ ...|+ +|++++++.++.. +++++|..
T Consensus 153 ~~~t~-i~~~~~Sv~~~Av~~a~~~~~~~~~~~vlViGa-G~iG~~~a~~L-~~~G~~~V~v~~r~~~ra~~la~~~g~~ 229 (423)
T PRK00045 153 RTETG-IGAGAVSVASAAVELAKQIFGDLSGKKVLVIGA-GEMGELVAKHL-AEKGVRKITVANRTLERAEELAEEFGGE 229 (423)
T ss_pred hhhcC-CCCCCcCHHHHHHHHHHHhhCCccCCEEEEECc-hHHHHHHHHHH-HHCCCCeEEEEeCCHHHHHHHHHHcCCc
Confidence 33322 223356666666633222 257899999997 99999999999 55787 8999999888765 55666653
Q ss_pred EEEEcCCchhHHHHHHHHhCCCcccEEEECCCCc
Q psy1959 210 AALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE 243 (296)
Q Consensus 210 ~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~ 243 (296)
.... .+. .+.. .++|++|+|++..
T Consensus 230 -~~~~---~~~----~~~l--~~aDvVI~aT~s~ 253 (423)
T PRK00045 230 -AIPL---DEL----PEAL--AEADIVISSTGAP 253 (423)
T ss_pred -EeeH---HHH----HHHh--ccCCEEEECCCCC
Confidence 2222 122 2222 2689999999973
No 177
>PRK12829 short chain dehydrogenase; Provisional
Probab=96.65 E-value=0.0093 Score=52.11 Aligned_cols=83 Identities=16% Similarity=0.027 Sum_probs=54.4
Q ss_pred CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCC-c--E--EEEcCCchhHHHHHHHHhC-CCc
Q psy1959 159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGA-W--A--ALTFTNEKSLVNKVLEVSG-GKY 232 (296)
Q Consensus 159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~-~--~--~~~~~~~~~~~~~i~~~~~-~~g 232 (296)
.-++.+++|+|++|++|..+++.+ ...|++|+++++++++.+.+.+... . . ..+..+.....+.+.+... -.+
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L-~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 86 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAF-AEAGARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTAVERFGG 86 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 347789999999999999988888 4579999999998776665543221 1 1 1233332333222322211 136
Q ss_pred ccEEEECCCC
Q psy1959 233 ANVVFEAVGG 242 (296)
Q Consensus 233 ~d~vld~~g~ 242 (296)
+|+++.+.|.
T Consensus 87 ~d~vi~~ag~ 96 (264)
T PRK12829 87 LDVLVNNAGI 96 (264)
T ss_pred CCEEEECCCC
Confidence 9999998885
No 178
>PRK05866 short chain dehydrogenase; Provisional
Probab=96.64 E-value=0.012 Score=52.77 Aligned_cols=81 Identities=23% Similarity=0.291 Sum_probs=53.3
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcE-E--EEcCCchhHHHHHHHHhC-CCc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWA-A--LTFTNEKSLVNKVLEVSG-GKY 232 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~-~--~~~~~~~~~~~~i~~~~~-~~g 232 (296)
.+++++|+|++|++|.+.++.+ ...|++|++++++.++.+.+.+ .+... . .+..+..+..+.+..... -..
T Consensus 39 ~~k~vlItGasggIG~~la~~L-a~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~ 117 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQF-ARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIGG 117 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4689999999999999988877 4479999999998877655432 23322 1 233332333333332211 236
Q ss_pred ccEEEECCCC
Q psy1959 233 ANVVFEAVGG 242 (296)
Q Consensus 233 ~d~vld~~g~ 242 (296)
+|+++++.|.
T Consensus 118 id~li~~AG~ 127 (293)
T PRK05866 118 VDILINNAGR 127 (293)
T ss_pred CCEEEECCCC
Confidence 8999999884
No 179
>PRK05867 short chain dehydrogenase; Provisional
Probab=96.63 E-value=0.012 Score=51.20 Aligned_cols=81 Identities=14% Similarity=0.106 Sum_probs=53.6
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcE-E--EEcCCchhHHHHHHHHhC-CCc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWA-A--LTFTNEKSLVNKVLEVSG-GKY 232 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~-~--~~~~~~~~~~~~i~~~~~-~~g 232 (296)
.+++++|+|+++++|.++++.+ ...|++|++++++.++.+.+.+ .+... . .+..+..+..+.+.+... -..
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 86 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAY-VEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGG 86 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 5789999999999999988887 4579999999998777655432 23222 1 233332333333333221 126
Q ss_pred ccEEEECCCC
Q psy1959 233 ANVVFEAVGG 242 (296)
Q Consensus 233 ~d~vld~~g~ 242 (296)
+|+++.+.|.
T Consensus 87 id~lv~~ag~ 96 (253)
T PRK05867 87 IDIAVCNAGI 96 (253)
T ss_pred CCEEEECCCC
Confidence 8999999874
No 180
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=96.63 E-value=0.013 Score=50.66 Aligned_cols=81 Identities=19% Similarity=0.175 Sum_probs=51.9
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc--hHHHHHhcCCcE-E--EEcCCchhHHHHHHHHhC-CCccc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED--KTDLIRQKGAWA-A--LTFTNEKSLVNKVLEVSG-GKYAN 234 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~--~~~~~~~~g~~~-~--~~~~~~~~~~~~i~~~~~-~~g~d 234 (296)
.+++++|+|++|++|.++++.+ ...|++|+.+++++. ..+.+++.+... . .+..+..+....+.+... ...+|
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l-~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 82 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGL-AEAGADIVGAGRSEPSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEFGHID 82 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEcCchHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence 5789999999999999988777 447999999987652 123334444322 1 233332444444443321 23689
Q ss_pred EEEECCCC
Q psy1959 235 VVFEAVGG 242 (296)
Q Consensus 235 ~vld~~g~ 242 (296)
+++.+.|.
T Consensus 83 ~li~~ag~ 90 (248)
T TIGR01832 83 ILVNNAGI 90 (248)
T ss_pred EEEECCCC
Confidence 99999874
No 181
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.63 E-value=0.017 Score=47.55 Aligned_cols=70 Identities=21% Similarity=0.119 Sum_probs=51.4
Q ss_pred EEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959 165 VLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG 242 (296)
Q Consensus 165 vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~ 242 (296)
|+|+|++|.+|..+++.+ ...|.+|+++.|++++.+. ..++. ++..+- .+. +.+.+... ++|.++.+.|.
T Consensus 1 I~V~GatG~vG~~l~~~L-~~~~~~V~~~~R~~~~~~~--~~~~~-~~~~d~-~d~-~~~~~al~--~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQL-LRRGHEVTALVRSPSKAED--SPGVE-IIQGDL-FDP-DSVKAALK--GADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHH-HHTTSEEEEEESSGGGHHH--CTTEE-EEESCT-TCH-HHHHHHHT--TSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHH-HHCCCEEEEEecCchhccc--ccccc-cceeee-hhh-hhhhhhhh--hcchhhhhhhh
Confidence 789999999999999999 5578999999999998877 33433 232221 222 34455443 79999999984
No 182
>PRK06483 dihydromonapterin reductase; Provisional
Probab=96.62 E-value=0.017 Score=49.66 Aligned_cols=80 Identities=20% Similarity=0.206 Sum_probs=52.1
Q ss_pred CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch-HHHHHhcCCcEE-EEcCCchhHHHHHHHHhCC-CcccEEEE
Q psy1959 162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK-TDLIRQKGAWAA-LTFTNEKSLVNKVLEVSGG-KYANVVFE 238 (296)
Q Consensus 162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~-~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~-~g~d~vld 238 (296)
+++++|+|+++++|.++++.+ ...|++|+++++++++ .+.+++.+...+ .+..+..+..+.+.+.... .++|++++
T Consensus 2 ~k~vlItGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~ 80 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHL-LAQGQPVIVSYRTHYPAIDGLRQAGAQCIQADFSTNAGIMAFIDELKQHTDGLRAIIH 80 (236)
T ss_pred CceEEEECCCChHHHHHHHHH-HHCCCeEEEEeCCchhHHHHHHHcCCEEEEcCCCCHHHHHHHHHHHHhhCCCccEEEE
Confidence 468999999999999988877 4579999999987654 334444553221 2333323444444443221 25899999
Q ss_pred CCCC
Q psy1959 239 AVGG 242 (296)
Q Consensus 239 ~~g~ 242 (296)
+.|.
T Consensus 81 ~ag~ 84 (236)
T PRK06483 81 NASD 84 (236)
T ss_pred CCcc
Confidence 9874
No 183
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=96.61 E-value=0.013 Score=51.10 Aligned_cols=81 Identities=17% Similarity=0.157 Sum_probs=53.4
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH----HhcCCcEE---EEcCCchhHHHHHHHHh-CCCc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI----RQKGAWAA---LTFTNEKSLVNKVLEVS-GGKY 232 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~----~~~g~~~~---~~~~~~~~~~~~i~~~~-~~~g 232 (296)
++++++|+|++|++|.++++.+ ...|++|+++++++++.+.+ ++.|.... .+..+..+..+.+.+.. ....
T Consensus 9 ~~k~vlItGa~g~iG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 87 (255)
T PRK07523 9 TGRRALVTGSSQGIGYALAEGL-AQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIGP 87 (255)
T ss_pred CCCEEEEECCcchHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 5789999999999999988877 44799999999887765433 22232221 23333233333333332 1236
Q ss_pred ccEEEECCCC
Q psy1959 233 ANVVFEAVGG 242 (296)
Q Consensus 233 ~d~vld~~g~ 242 (296)
+|+++.+.|.
T Consensus 88 ~d~li~~ag~ 97 (255)
T PRK07523 88 IDILVNNAGM 97 (255)
T ss_pred CCEEEECCCC
Confidence 8999999984
No 184
>PRK09291 short chain dehydrogenase; Provisional
Probab=96.60 E-value=0.015 Score=50.66 Aligned_cols=75 Identities=20% Similarity=0.243 Sum_probs=50.7
Q ss_pred CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcE-E--EEcCCchhHHHHHHHHhCCCccc
Q psy1959 162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWA-A--LTFTNEKSLVNKVLEVSGGKYAN 234 (296)
Q Consensus 162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~-~--~~~~~~~~~~~~i~~~~~~~g~d 234 (296)
+++++|+|++|++|..+++.+ ...|++|+++++++++.+.+.+ .+... . .+..+ .+.+..... .++|
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l-~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~----~~~~~~~~~-~~id 75 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRL-ARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTD----AIDRAQAAE-WDVD 75 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCC----HHHHHHHhc-CCCC
Confidence 458999999999999998888 4579999999988776555433 23221 1 23333 123333332 3799
Q ss_pred EEEECCCC
Q psy1959 235 VVFEAVGG 242 (296)
Q Consensus 235 ~vld~~g~ 242 (296)
++|.+.|.
T Consensus 76 ~vi~~ag~ 83 (257)
T PRK09291 76 VLLNNAGI 83 (257)
T ss_pred EEEECCCc
Confidence 99999873
No 185
>PRK07577 short chain dehydrogenase; Provisional
Probab=96.60 E-value=0.014 Score=49.98 Aligned_cols=76 Identities=24% Similarity=0.229 Sum_probs=51.5
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCc-EEEEcCCchhHHHHHHHHhCCCcccEEEEC
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAW-AALTFTNEKSLVNKVLEVSGGKYANVVFEA 239 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~i~~~~~~~g~d~vld~ 239 (296)
.+++++|.|++|++|...++.+ ...|.+|+.++++.++ . .... ...+..+..+..+.+.+.....++|+++.+
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l-~~~G~~v~~~~r~~~~-~----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~vi~~ 75 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRL-ANLGHQVIGIARSAID-D----FPGELFACDLADIEQTAATLAQINEIHPVDAIVNN 75 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHH-HHCCCEEEEEeCCccc-c----cCceEEEeeCCCHHHHHHHHHHHHHhCCCcEEEEC
Confidence 3578999999999999988887 4579999999987654 1 1111 223444434444445544433468999999
Q ss_pred CCC
Q psy1959 240 VGG 242 (296)
Q Consensus 240 ~g~ 242 (296)
.|.
T Consensus 76 ag~ 78 (234)
T PRK07577 76 VGI 78 (234)
T ss_pred CCC
Confidence 884
No 186
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=96.59 E-value=0.017 Score=51.20 Aligned_cols=97 Identities=20% Similarity=0.134 Sum_probs=65.1
Q ss_pred HcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC--EEEEEeCCcchHHHHHhc----CCcEEEEcCCchhHHHHHHHHh-
Q psy1959 156 HAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA--KVIGVCNSEDKTDLIRQK----GAWAALTFTNEKSLVNKVLEVS- 228 (296)
Q Consensus 156 ~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~--~Vi~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~i~~~~- 228 (296)
.+.+++|++||.+|+ |+ |..+.+++ +..+. +|++++.+++.++.+++. +...+.... .++ .+..
T Consensus 72 ~~~~~~g~~VLDiG~-G~-G~~~~~~a-~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~--~d~----~~l~~ 142 (272)
T PRK11873 72 LAELKPGETVLDLGS-GG-GFDCFLAA-RRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRL--GEI----EALPV 142 (272)
T ss_pred hccCCCCCEEEEeCC-CC-CHHHHHHH-HHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEE--cch----hhCCC
Confidence 467889999999997 66 88777777 44443 799999999988888763 332221111 111 1111
Q ss_pred CCCcccEEEECCC-----C--ccHHHHHHHhhccCceEEee
Q psy1959 229 GGKYANVVFEAVG-----G--EDKTDLIRQKGAWAALTFTN 262 (296)
Q Consensus 229 ~~~g~d~vld~~g-----~--~~~~~~~~~lg~~~g~~~~~ 262 (296)
....+|+|+...- + ..+..+.+.| +++|.+.+.
T Consensus 143 ~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~L-kpGG~l~i~ 182 (272)
T PRK11873 143 ADNSVDVIISNCVINLSPDKERVFKEAFRVL-KPGGRFAIS 182 (272)
T ss_pred CCCceeEEEEcCcccCCCCHHHHHHHHHHHc-CCCcEEEEE
Confidence 2347999986531 2 4688999999 999988653
No 187
>PRK07814 short chain dehydrogenase; Provisional
Probab=96.59 E-value=0.01 Score=52.07 Aligned_cols=81 Identities=23% Similarity=0.266 Sum_probs=53.5
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcE-E--EEcCCchhHHHHHHHHhC-CCc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWA-A--LTFTNEKSLVNKVLEVSG-GKY 232 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~-~--~~~~~~~~~~~~i~~~~~-~~g 232 (296)
++++++|+|++|++|.+.++.+ ...|++|+++++++++.+.+.+ .+... . .+..+.....+.+.+... -..
T Consensus 9 ~~~~vlItGasggIG~~~a~~l-~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 87 (263)
T PRK07814 9 DDQVAVVTGAGRGLGAAIALAF-AEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAFGR 87 (263)
T ss_pred CCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 5789999999999999999888 4579999999998776654432 23221 1 333342333333333321 136
Q ss_pred ccEEEECCCC
Q psy1959 233 ANVVFEAVGG 242 (296)
Q Consensus 233 ~d~vld~~g~ 242 (296)
+|+++++.|.
T Consensus 88 id~vi~~Ag~ 97 (263)
T PRK07814 88 LDIVVNNVGG 97 (263)
T ss_pred CCEEEECCCC
Confidence 8999999873
No 188
>PRK07326 short chain dehydrogenase; Provisional
Probab=96.58 E-value=0.015 Score=49.91 Aligned_cols=81 Identities=14% Similarity=0.124 Sum_probs=53.1
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCC---cEE--EEcCCchhHHHHHHHHhC-CCcc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGA---WAA--LTFTNEKSLVNKVLEVSG-GKYA 233 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~---~~~--~~~~~~~~~~~~i~~~~~-~~g~ 233 (296)
.+.+++|+|++|++|..+++.+ ...|++|+++++++++...+. ++.. ... .+..+..++.+.+.++.. ..++
T Consensus 5 ~~~~ilItGatg~iG~~la~~l-~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 83 (237)
T PRK07326 5 KGKVALITGGSKGIGFAIAEAL-LAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGL 83 (237)
T ss_pred CCCEEEEECCCCcHHHHHHHHH-HHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4689999999999999988888 446999999999877665443 2221 111 233332344444443321 1368
Q ss_pred cEEEECCCC
Q psy1959 234 NVVFEAVGG 242 (296)
Q Consensus 234 d~vld~~g~ 242 (296)
|++|++.|.
T Consensus 84 d~vi~~ag~ 92 (237)
T PRK07326 84 DVLIANAGV 92 (237)
T ss_pred CEEEECCCC
Confidence 999998874
No 189
>PRK08862 short chain dehydrogenase; Provisional
Probab=96.57 E-value=0.011 Score=51.04 Aligned_cols=80 Identities=14% Similarity=0.051 Sum_probs=52.7
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC--CC
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG--GK 231 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~--~~ 231 (296)
++++++|.|+++++|.+.+.-+ ...|++|+++.+++++.+.+. +.+.... .+..+.++..+.+.+... +.
T Consensus 4 ~~k~~lVtGas~GIG~aia~~l-a~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 82 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHF-ARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFNR 82 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHH-HHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 4789999999999999977666 347999999999888765443 3343321 223332334333443322 22
Q ss_pred cccEEEECCC
Q psy1959 232 YANVVFEAVG 241 (296)
Q Consensus 232 g~d~vld~~g 241 (296)
.+|+++++.|
T Consensus 83 ~iD~li~nag 92 (227)
T PRK08862 83 APDVLVNNWT 92 (227)
T ss_pred CCCEEEECCc
Confidence 6999999987
No 190
>PRK07478 short chain dehydrogenase; Provisional
Probab=96.57 E-value=0.012 Score=51.30 Aligned_cols=81 Identities=20% Similarity=0.178 Sum_probs=53.3
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG-GKY 232 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g 232 (296)
++++++|+|+++++|.+.++.+ ...|++|+.+++++++.+.+. +.+.... .+..+..+..+.+.+... -..
T Consensus 5 ~~k~~lItGas~giG~~ia~~l-~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLF-AREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFGG 83 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 4679999999999999988777 447999999999887765543 2233222 233332333333333321 136
Q ss_pred ccEEEECCCC
Q psy1959 233 ANVVFEAVGG 242 (296)
Q Consensus 233 ~d~vld~~g~ 242 (296)
+|+++.+.|.
T Consensus 84 id~li~~ag~ 93 (254)
T PRK07478 84 LDIAFNNAGT 93 (254)
T ss_pred CCEEEECCCC
Confidence 9999999884
No 191
>PRK05854 short chain dehydrogenase; Provisional
Probab=96.55 E-value=0.016 Score=52.47 Aligned_cols=81 Identities=21% Similarity=0.206 Sum_probs=52.3
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hc--CCcE---EEEcCCchhHHHHHHHHh-CC
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QK--GAWA---ALTFTNEKSLVNKVLEVS-GG 230 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~--g~~~---~~~~~~~~~~~~~i~~~~-~~ 230 (296)
.+++++|+|+++++|.++++.+ ...|++|+++++++++.+.+. +. +... ..+..+..+..+.+.+.. ..
T Consensus 13 ~gk~~lITGas~GIG~~~a~~L-a~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~ 91 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRL-AAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG 91 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 4789999999999999988777 347999999999887655432 21 1111 133334233333333322 12
Q ss_pred CcccEEEECCCC
Q psy1959 231 KYANVVFEAVGG 242 (296)
Q Consensus 231 ~g~d~vld~~g~ 242 (296)
..+|+++++.|.
T Consensus 92 ~~iD~li~nAG~ 103 (313)
T PRK05854 92 RPIHLLINNAGV 103 (313)
T ss_pred CCccEEEECCcc
Confidence 368999998874
No 192
>KOG1205|consensus
Probab=96.54 E-value=0.015 Score=51.81 Aligned_cols=80 Identities=26% Similarity=0.319 Sum_probs=53.3
Q ss_pred CCcEEEEEcCCCcHHHH-HHHHHHHhCCCEEEEEeCCcchHHHH----HhcCCcE-E----EEcCCchhHHHHHHHHh-C
Q psy1959 161 EKQTVLVTAAGGGLGLA-AVDMATKIYKAKVIGVCNSEDKTDLI----RQKGAWA-A----LTFTNEKSLVNKVLEVS-G 229 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~a-a~~la~~~~g~~Vi~~~~~~~~~~~~----~~~g~~~-~----~~~~~~~~~~~~i~~~~-~ 229 (296)
.++.|+|+|||+|+|.+ |.+++ + .|++++.+.+..++++.+ ++.+... + .+..+.++..+.+.+.. .
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la-~-~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~ 88 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELA-K-RGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRH 88 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHH-h-CCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHh
Confidence 57899999999999977 55666 4 699989899888887766 3334333 2 22333234444443322 2
Q ss_pred CCcccEEEECCCC
Q psy1959 230 GKYANVVFEAVGG 242 (296)
Q Consensus 230 ~~g~d~vld~~g~ 242 (296)
-.++|+.+++.|-
T Consensus 89 fg~vDvLVNNAG~ 101 (282)
T KOG1205|consen 89 FGRVDVLVNNAGI 101 (282)
T ss_pred cCCCCEEEecCcc
Confidence 3479999999883
No 193
>KOG1014|consensus
Probab=96.53 E-value=0.015 Score=51.91 Aligned_cols=81 Identities=26% Similarity=0.332 Sum_probs=59.5
Q ss_pred CCCcEEEEEcCCCcHHHH-HHHHHHHhCCCEEEEEeCCcchHHHHHh-----cCCc---EEEEcCCchhHHHHHHHHhCC
Q psy1959 160 KEKQTVLVTAAGGGLGLA-AVDMATKIYKAKVIGVCNSEDKTDLIRQ-----KGAW---AALTFTNEKSLVNKVLEVSGG 230 (296)
Q Consensus 160 ~~g~~vlI~Ga~g~vG~a-a~~la~~~~g~~Vi~~~~~~~~~~~~~~-----~g~~---~~~~~~~~~~~~~~i~~~~~~ 230 (296)
+-|+|.+|.|++.++|.+ +-++| + .|.+|+.+.|+++|++..++ .++. ..+|+.+....-+.+++...+
T Consensus 47 ~~g~WAVVTGaTDGIGKayA~eLA-k-rG~nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~ 124 (312)
T KOG1014|consen 47 KLGSWAVVTGATDGIGKAYARELA-K-RGFNVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAG 124 (312)
T ss_pred hcCCEEEEECCCCcchHHHHHHHH-H-cCCEEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcC
Confidence 357999999999999976 77788 5 79999999999999876643 2321 235665422234556666656
Q ss_pred CcccEEEECCCC
Q psy1959 231 KYANVVFEAVGG 242 (296)
Q Consensus 231 ~g~d~vld~~g~ 242 (296)
-.+-+.++++|-
T Consensus 125 ~~VgILVNNvG~ 136 (312)
T KOG1014|consen 125 LDVGILVNNVGM 136 (312)
T ss_pred CceEEEEecccc
Confidence 677899999996
No 194
>PRK07774 short chain dehydrogenase; Provisional
Probab=96.50 E-value=0.014 Score=50.53 Aligned_cols=81 Identities=15% Similarity=0.140 Sum_probs=51.4
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcE---EEEcCCchhHHHHHHHHh-CCCc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWA---ALTFTNEKSLVNKVLEVS-GGKY 232 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~---~~~~~~~~~~~~~i~~~~-~~~g 232 (296)
.+.+++|+|++|++|..+++.+ ...|++|+.+++++++.+.+.+ .+... ..+..+..+..+.+.+.. ...+
T Consensus 5 ~~k~vlItGasg~iG~~la~~l-~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK07774 5 DDKVAIVTGAAGGIGQAYAEAL-AREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFGG 83 (250)
T ss_pred CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence 5678999999999999988877 4579999999998766544322 22222 123333222222222221 1126
Q ss_pred ccEEEECCCC
Q psy1959 233 ANVVFEAVGG 242 (296)
Q Consensus 233 ~d~vld~~g~ 242 (296)
+|++|.+.|.
T Consensus 84 id~vi~~ag~ 93 (250)
T PRK07774 84 IDYLVNNAAI 93 (250)
T ss_pred CCEEEECCCC
Confidence 8999999884
No 195
>PRK06500 short chain dehydrogenase; Provisional
Probab=96.50 E-value=0.017 Score=49.96 Aligned_cols=81 Identities=17% Similarity=0.124 Sum_probs=53.1
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCcEE---EEcCCchhHHHHHHHHhC-CCcccE
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAWAA---LTFTNEKSLVNKVLEVSG-GKYANV 235 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~d~ 235 (296)
++++++|+|++|++|.+.++.+ ...|++|+++++++++.+.+. +++.... .+..+..+....+..... ...+|+
T Consensus 5 ~~k~vlItGasg~iG~~la~~l-~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 83 (249)
T PRK06500 5 QGKTALITGGTSGIGLETARQF-LAEGARVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAEAFGRLDA 83 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence 4679999999999999988887 457999999998877665543 3443322 223332222222222211 136899
Q ss_pred EEECCCC
Q psy1959 236 VFEAVGG 242 (296)
Q Consensus 236 vld~~g~ 242 (296)
++.+.|.
T Consensus 84 vi~~ag~ 90 (249)
T PRK06500 84 VFINAGV 90 (249)
T ss_pred EEECCCC
Confidence 9999874
No 196
>PRK05717 oxidoreductase; Validated
Probab=96.49 E-value=0.015 Score=50.82 Aligned_cols=81 Identities=19% Similarity=0.163 Sum_probs=52.6
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCcEE---EEcCCchhHHHHHHHHhCC-CcccE
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAWAA---LTFTNEKSLVNKVLEVSGG-KYANV 235 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~~---~~~~~~~~~~~~i~~~~~~-~g~d~ 235 (296)
.|++++|+|++|++|..++..+ ...|++|++++++.++.+.+. +.+.... .+..+..+..+.+.+.... ..+|+
T Consensus 9 ~~k~vlItG~sg~IG~~~a~~l-~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~ 87 (255)
T PRK05717 9 NGRVALVTGAARGIGLGIAAWL-IAEGWQVVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQFGRLDA 87 (255)
T ss_pred CCCEEEEeCCcchHHHHHHHHH-HHcCCEEEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHhCCCCE
Confidence 5789999999999999988877 457999999988776655443 3442221 2333323333333333211 25899
Q ss_pred EEECCCC
Q psy1959 236 VFEAVGG 242 (296)
Q Consensus 236 vld~~g~ 242 (296)
++.+.|.
T Consensus 88 li~~ag~ 94 (255)
T PRK05717 88 LVCNAAI 94 (255)
T ss_pred EEECCCc
Confidence 9999884
No 197
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.49 E-value=0.014 Score=50.94 Aligned_cols=81 Identities=9% Similarity=0.060 Sum_probs=50.9
Q ss_pred CCcEEEEEcCC--CcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCc--EE--EEcCCchhHHHHHHHHhC-CCcc
Q psy1959 161 EKQTVLVTAAG--GGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAW--AA--LTFTNEKSLVNKVLEVSG-GKYA 233 (296)
Q Consensus 161 ~g~~vlI~Ga~--g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~--~~--~~~~~~~~~~~~i~~~~~-~~g~ 233 (296)
.+++++|+|++ +++|.++++.+ ...|++|++..++++..+.++++... .. .+..+..+..+.+.+... ...+
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~l-a~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i 84 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAI-KDQGATVIYTYQNDRMKKSLQKLVDEEDLLVECDVASDESIERAFATIKERVGKI 84 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHH-HHCCCEEEEecCchHHHHHHHhhccCceeEEeCCCCCHHHHHHHHHHHHHHhCCC
Confidence 57899999998 79999987777 44799999998875433444443211 11 233332333333333321 1369
Q ss_pred cEEEECCCC
Q psy1959 234 NVVFEAVGG 242 (296)
Q Consensus 234 d~vld~~g~ 242 (296)
|+++++.|.
T Consensus 85 D~lv~nAg~ 93 (252)
T PRK06079 85 DGIVHAIAY 93 (252)
T ss_pred CEEEEcccc
Confidence 999999874
No 198
>PRK06194 hypothetical protein; Provisional
Probab=96.49 E-value=0.015 Score=51.57 Aligned_cols=81 Identities=16% Similarity=0.183 Sum_probs=51.6
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-h---cCCcEE-E--EcCCchhHHHHHHHHh-CCCc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-Q---KGAWAA-L--TFTNEKSLVNKVLEVS-GGKY 232 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~---~g~~~~-~--~~~~~~~~~~~i~~~~-~~~g 232 (296)
.+.++||+|++|++|...++.+ ...|++|++++++.++.+.+. + .+.... + +..+..++.+.+.+.. ....
T Consensus 5 ~~k~vlVtGasggIG~~la~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~ 83 (287)
T PRK06194 5 AGKVAVITGAASGFGLAFARIG-AALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGA 83 (287)
T ss_pred CCCEEEEeCCccHHHHHHHHHH-HHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 3678999999999999988877 447999999998876654432 2 233221 2 2233233333333321 1136
Q ss_pred ccEEEECCCC
Q psy1959 233 ANVVFEAVGG 242 (296)
Q Consensus 233 ~d~vld~~g~ 242 (296)
+|+++.+.|.
T Consensus 84 id~vi~~Ag~ 93 (287)
T PRK06194 84 VHLLFNNAGV 93 (287)
T ss_pred CCEEEECCCC
Confidence 8999999985
No 199
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=96.47 E-value=0.024 Score=48.72 Aligned_cols=81 Identities=21% Similarity=0.213 Sum_probs=53.1
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH----HhcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI----RQKGAWAA---LTFTNEKSLVNKVLEVSG-GKY 232 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~----~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g 232 (296)
++.+++|+|++|++|...++.+ ...|.+|+++++++++.+.+ ++.+.... .+..+...+.+.+.+... -..
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l-~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRL-AADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFGA 82 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 3578999999999999988887 44799999999987775443 22343222 233332334444433321 125
Q ss_pred ccEEEECCCC
Q psy1959 233 ANVVFEAVGG 242 (296)
Q Consensus 233 ~d~vld~~g~ 242 (296)
+|.++.+.|.
T Consensus 83 id~vi~~ag~ 92 (246)
T PRK05653 83 LDILVNNAGI 92 (246)
T ss_pred CCEEEECCCc
Confidence 8999999875
No 200
>PRK07109 short chain dehydrogenase; Provisional
Probab=96.47 E-value=0.019 Score=52.60 Aligned_cols=81 Identities=16% Similarity=0.132 Sum_probs=54.1
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG-GKY 232 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g 232 (296)
++++++|+|++|++|.++++.+ ...|++|+++++++++.+.+. +.|.... .+..+..+..+.+.+... -..
T Consensus 7 ~~k~vlITGas~gIG~~la~~l-a~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~ 85 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAF-ARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELGP 85 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCCC
Confidence 5679999999999999988877 457999999999887765443 3344332 233342333333333211 126
Q ss_pred ccEEEECCCC
Q psy1959 233 ANVVFEAVGG 242 (296)
Q Consensus 233 ~d~vld~~g~ 242 (296)
+|+++++.|.
T Consensus 86 iD~lInnAg~ 95 (334)
T PRK07109 86 IDTWVNNAMV 95 (334)
T ss_pred CCEEEECCCc
Confidence 8999999984
No 201
>PRK04148 hypothetical protein; Provisional
Probab=96.46 E-value=0.025 Score=44.64 Aligned_cols=49 Identities=14% Similarity=0.094 Sum_probs=37.7
Q ss_pred CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE
Q psy1959 160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA 211 (296)
Q Consensus 160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~ 211 (296)
.++.++++.|. | .|...+..+ ...|.+|+++|.+++..+.+++.+...+
T Consensus 15 ~~~~kileIG~-G-fG~~vA~~L-~~~G~~ViaIDi~~~aV~~a~~~~~~~v 63 (134)
T PRK04148 15 GKNKKIVELGI-G-FYFKVAKKL-KESGFDVIVIDINEKAVEKAKKLGLNAF 63 (134)
T ss_pred ccCCEEEEEEe-c-CCHHHHHHH-HHCCCEEEEEECCHHHHHHHHHhCCeEE
Confidence 45688999997 7 787444444 2369999999999999999988876544
No 202
>PRK08589 short chain dehydrogenase; Validated
Probab=96.46 E-value=0.017 Score=51.05 Aligned_cols=80 Identities=20% Similarity=0.258 Sum_probs=51.0
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHH-HH---hcCCcE---EEEcCCchhHHHHHHHHhC-CCc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDL-IR---QKGAWA---ALTFTNEKSLVNKVLEVSG-GKY 232 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~-~~---~~g~~~---~~~~~~~~~~~~~i~~~~~-~~g 232 (296)
++++++|+|+++++|.+.++.+ ...|++|++++++ ++.+. +. +.+... ..+..+..+....+.+... ...
T Consensus 5 ~~k~vlItGas~gIG~aia~~l-~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 82 (272)
T PRK08589 5 ENKVAVITGASTGIGQASAIAL-AQEGAYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFGR 82 (272)
T ss_pred CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence 5789999999999999988776 4479999999988 44332 22 223221 2344442333333333321 136
Q ss_pred ccEEEECCCC
Q psy1959 233 ANVVFEAVGG 242 (296)
Q Consensus 233 ~d~vld~~g~ 242 (296)
+|+++++.|.
T Consensus 83 id~li~~Ag~ 92 (272)
T PRK08589 83 VDVLFNNAGV 92 (272)
T ss_pred cCEEEECCCC
Confidence 8999999874
No 203
>PRK07890 short chain dehydrogenase; Provisional
Probab=96.45 E-value=0.017 Score=50.31 Aligned_cols=81 Identities=20% Similarity=0.169 Sum_probs=53.3
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcE---EEEcCCchhHHHHHHHHhC-CCc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWA---ALTFTNEKSLVNKVLEVSG-GKY 232 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~---~~~~~~~~~~~~~i~~~~~-~~g 232 (296)
++++++|+|++|++|+++++.+ ...|++|+++++++++.+.+.+ .+... ..+..+..+....+.+... -..
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 82 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRA-ARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFGR 82 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 5689999999999999988877 4579999999998876654432 23222 1233332333333333321 136
Q ss_pred ccEEEECCCC
Q psy1959 233 ANVVFEAVGG 242 (296)
Q Consensus 233 ~d~vld~~g~ 242 (296)
+|+++.+.|.
T Consensus 83 ~d~vi~~ag~ 92 (258)
T PRK07890 83 VDALVNNAFR 92 (258)
T ss_pred ccEEEECCcc
Confidence 8999998874
No 204
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=96.45 E-value=0.021 Score=49.85 Aligned_cols=81 Identities=15% Similarity=0.160 Sum_probs=51.6
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch--HHHHHhcCCcEE---EEcCCchhHHHHHHHHhC-CCccc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK--TDLIRQKGAWAA---LTFTNEKSLVNKVLEVSG-GKYAN 234 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~--~~~~~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~d 234 (296)
++++++|+|+++++|.++++.+ ...|++|+++++++.. .+.+++.+.... .+..+..+..+.+.+... -..+|
T Consensus 7 ~~k~~lItGas~gIG~aia~~l-~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~iD 85 (251)
T PRK12481 7 NGKVAIITGCNTGLGQGMAIGL-AKAGADIVGVGVAEAPETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVMGHID 85 (251)
T ss_pred CCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEecCchHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHcCCCC
Confidence 5789999999999999988877 4479999988765422 233344443321 333442344444433321 13699
Q ss_pred EEEECCCC
Q psy1959 235 VVFEAVGG 242 (296)
Q Consensus 235 ~vld~~g~ 242 (296)
+++++.|.
T Consensus 86 ~lv~~ag~ 93 (251)
T PRK12481 86 ILINNAGI 93 (251)
T ss_pred EEEECCCc
Confidence 99999884
No 205
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.45 E-value=0.074 Score=50.81 Aligned_cols=85 Identities=19% Similarity=0.196 Sum_probs=62.0
Q ss_pred CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959 159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFE 238 (296)
Q Consensus 159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld 238 (296)
.-.|++++|.|. |.+|..+++.+ +.+|++|++.++++.+...+...|+.. . ++.+.+ +..|+++.
T Consensus 251 ~LaGKtVgVIG~-G~IGr~vA~rL-~a~Ga~ViV~e~dp~~a~~A~~~G~~~-~------~leell------~~ADIVI~ 315 (476)
T PTZ00075 251 MIAGKTVVVCGY-GDVGKGCAQAL-RGFGARVVVTEIDPICALQAAMEGYQV-V------TLEDVV------ETADIFVT 315 (476)
T ss_pred CcCCCEEEEECC-CHHHHHHHHHH-HHCCCEEEEEeCCchhHHHHHhcCcee-c------cHHHHH------hcCCEEEE
Confidence 347999999997 99999999999 678999999988777665555556432 1 122221 26899999
Q ss_pred CCCCc-cHH-HHHHHhhccCceE
Q psy1959 239 AVGGE-DKT-DLIRQKGAWAALT 259 (296)
Q Consensus 239 ~~g~~-~~~-~~~~~lg~~~g~~ 259 (296)
+.|.. .++ ..++.| ++++.+
T Consensus 316 atGt~~iI~~e~~~~M-KpGAiL 337 (476)
T PTZ00075 316 ATGNKDIITLEHMRRM-KNNAIV 337 (476)
T ss_pred CCCcccccCHHHHhcc-CCCcEE
Confidence 99884 454 788888 666655
No 206
>PRK06179 short chain dehydrogenase; Provisional
Probab=96.44 E-value=0.01 Score=52.20 Aligned_cols=79 Identities=24% Similarity=0.299 Sum_probs=52.4
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcE-EEEcCCchhHHHHHHHHhC-CCcccEEEE
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWA-ALTFTNEKSLVNKVLEVSG-GKYANVVFE 238 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~i~~~~~-~~g~d~vld 238 (296)
.+++++|+|++|++|..+++.+ ...|++|++++++.++.+... +... ..+..+..++.+.+.+... ...+|++++
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l-~~~g~~V~~~~r~~~~~~~~~--~~~~~~~D~~d~~~~~~~~~~~~~~~g~~d~li~ 79 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKL-ARAGYRVFGTSRNPARAAPIP--GVELLELDVTDDASVQAAVDEVIARAGRIDVLVN 79 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHH-HHCCCEEEEEeCChhhccccC--CCeeEEeecCCHHHHHHHHHHHHHhCCCCCEEEE
Confidence 3568999999999999988777 447999999998766543221 2221 2344443444444444321 236899999
Q ss_pred CCCC
Q psy1959 239 AVGG 242 (296)
Q Consensus 239 ~~g~ 242 (296)
+.|.
T Consensus 80 ~ag~ 83 (270)
T PRK06179 80 NAGV 83 (270)
T ss_pred CCCC
Confidence 9984
No 207
>PRK12939 short chain dehydrogenase; Provisional
Probab=96.43 E-value=0.02 Score=49.45 Aligned_cols=81 Identities=17% Similarity=0.068 Sum_probs=52.8
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG-GKY 232 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g 232 (296)
++.+++|+|++|++|+..+..+ ...|++|+++++++++.+.+. +.+.... .+..+..+..+.+.+... ..+
T Consensus 6 ~~~~vlItGa~g~iG~~la~~l-~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 84 (250)
T PRK12939 6 AGKRALVTGAARGLGAAFAEAL-AEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGG 84 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 5789999999999999988877 457999999998877655442 2232221 233332333333333221 137
Q ss_pred ccEEEECCCC
Q psy1959 233 ANVVFEAVGG 242 (296)
Q Consensus 233 ~d~vld~~g~ 242 (296)
+|+++.+.|.
T Consensus 85 id~vi~~ag~ 94 (250)
T PRK12939 85 LDGLVNNAGI 94 (250)
T ss_pred CCEEEECCCC
Confidence 9999999985
No 208
>KOG0725|consensus
Probab=96.43 E-value=0.015 Score=51.78 Aligned_cols=81 Identities=20% Similarity=0.161 Sum_probs=53.3
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCc---E---EEEcCCchhHHHHHHHHhC-
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAW---A---ALTFTNEKSLVNKVLEVSG- 229 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~---~---~~~~~~~~~~~~~i~~~~~- 229 (296)
.|+.++|+|++.++|.+.+..+ ...|++|+...+++++.+.... .+.. . ..+..+..+..+.+.....
T Consensus 7 ~gkvalVTG~s~GIG~aia~~l-a~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~~ 85 (270)
T KOG0725|consen 7 AGKVALVTGGSSGIGKAIALLL-AKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVEK 85 (270)
T ss_pred CCcEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHHH
Confidence 6889999999999998876666 3479999999999888655432 2221 1 1233332333333333322
Q ss_pred -CCcccEEEECCCC
Q psy1959 230 -GKYANVVFEAVGG 242 (296)
Q Consensus 230 -~~g~d~vld~~g~ 242 (296)
...+|+.+++.|.
T Consensus 86 ~~GkidiLvnnag~ 99 (270)
T KOG0725|consen 86 FFGKIDILVNNAGA 99 (270)
T ss_pred hCCCCCEEEEcCCc
Confidence 2369999999885
No 209
>PRK07454 short chain dehydrogenase; Provisional
Probab=96.42 E-value=0.02 Score=49.41 Aligned_cols=82 Identities=20% Similarity=0.229 Sum_probs=53.4
Q ss_pred CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcE-E--EEcCCchhHHHHHHHHhC-CC
Q psy1959 160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWA-A--LTFTNEKSLVNKVLEVSG-GK 231 (296)
Q Consensus 160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~-~--~~~~~~~~~~~~i~~~~~-~~ 231 (296)
..+++++|.|++|++|..++..+ ...|++|+++++++++.+.+.+ .+... . .+..+..+....+.+... ..
T Consensus 4 ~~~k~vlItG~sg~iG~~la~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (241)
T PRK07454 4 NSMPRALITGASSGIGKATALAF-AKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFG 82 (241)
T ss_pred CCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 35678999999999999988888 4579999999998776654432 22222 1 233332333333333321 13
Q ss_pred cccEEEECCCC
Q psy1959 232 YANVVFEAVGG 242 (296)
Q Consensus 232 g~d~vld~~g~ 242 (296)
.+|+++.+.|.
T Consensus 83 ~id~lv~~ag~ 93 (241)
T PRK07454 83 CPDVLINNAGM 93 (241)
T ss_pred CCCEEEECCCc
Confidence 58999999984
No 210
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.41 E-value=0.025 Score=49.37 Aligned_cols=81 Identities=22% Similarity=0.244 Sum_probs=51.8
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCC-cchHHHHHhcCCcEE-EEcCCchhHHHHHHHHhC-CCcccEEE
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNS-EDKTDLIRQKGAWAA-LTFTNEKSLVNKVLEVSG-GKYANVVF 237 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~-~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~-~~g~d~vl 237 (296)
.+++++|+|++|++|.++++.+ ...|++|+++.++ ++..+.+++.+...+ .+..+..+..+.+.+... ...+|+++
T Consensus 6 ~~k~~lItGas~gIG~~~a~~l-~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li 84 (255)
T PRK06463 6 KGKVALITGGTRGIGRAIAEAF-LREGAKVAVLYNSAENEAKELREKGVFTIKCDVGNRDQVKKSKEVVEKEFGRVDVLV 84 (255)
T ss_pred CCCEEEEeCCCChHHHHHHHHH-HHCCCEEEEEeCCcHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 4689999999999999988777 4479999887654 334445544443222 344442344444443321 23689999
Q ss_pred ECCCC
Q psy1959 238 EAVGG 242 (296)
Q Consensus 238 d~~g~ 242 (296)
.+.|.
T Consensus 85 ~~ag~ 89 (255)
T PRK06463 85 NNAGI 89 (255)
T ss_pred ECCCc
Confidence 99874
No 211
>PRK08628 short chain dehydrogenase; Provisional
Probab=96.40 E-value=0.019 Score=50.12 Aligned_cols=81 Identities=15% Similarity=0.115 Sum_probs=52.9
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh---cCCcEE---EEcCCchhHHHHHHHHhC-CCcc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ---KGAWAA---LTFTNEKSLVNKVLEVSG-GKYA 233 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~---~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~ 233 (296)
++.+++|+|++|++|..+++.+ ...|++|+++++++++.+..++ .+.... .+..+..+....+.+... ..++
T Consensus 6 ~~~~ilItGasggiG~~la~~l-~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 84 (258)
T PRK08628 6 KDKVVIVTGGASGIGAAISLRL-AEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKFGRI 84 (258)
T ss_pred CCCEEEEeCCCChHHHHHHHHH-HHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence 4679999999999999977777 3479999999988776644333 233222 233332334443443322 1368
Q ss_pred cEEEECCCC
Q psy1959 234 NVVFEAVGG 242 (296)
Q Consensus 234 d~vld~~g~ 242 (296)
|+++.+.|.
T Consensus 85 d~vi~~ag~ 93 (258)
T PRK08628 85 DGLVNNAGV 93 (258)
T ss_pred CEEEECCcc
Confidence 999999984
No 212
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.40 E-value=0.017 Score=51.20 Aligned_cols=81 Identities=10% Similarity=0.016 Sum_probs=51.1
Q ss_pred CCcEEEEEcCCC--cHHHHHHHHHHHhCCCEEEEEeCCcchH---HHH-HhcCCcEE--EEcCCchhHHHHHHHHhC-CC
Q psy1959 161 EKQTVLVTAAGG--GLGLAAVDMATKIYKAKVIGVCNSEDKT---DLI-RQKGAWAA--LTFTNEKSLVNKVLEVSG-GK 231 (296)
Q Consensus 161 ~g~~vlI~Ga~g--~vG~aa~~la~~~~g~~Vi~~~~~~~~~---~~~-~~~g~~~~--~~~~~~~~~~~~i~~~~~-~~ 231 (296)
++++++|+|+++ ++|.++++.+ ...|++|++.+++++.. +.+ ++.|.... .+..+..+..+.+.+... -.
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~l-a~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~~~g 84 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQL-AAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEKKWG 84 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHH-HhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHHHhC
Confidence 578999999976 9999987777 45799999988765322 222 23343322 233342334444443322 13
Q ss_pred cccEEEECCCC
Q psy1959 232 YANVVFEAVGG 242 (296)
Q Consensus 232 g~d~vld~~g~ 242 (296)
.+|+++++.|.
T Consensus 85 ~iD~lVnnAG~ 95 (271)
T PRK06505 85 KLDFVVHAIGF 95 (271)
T ss_pred CCCEEEECCcc
Confidence 69999999984
No 213
>PRK06138 short chain dehydrogenase; Provisional
Probab=96.39 E-value=0.016 Score=50.20 Aligned_cols=81 Identities=20% Similarity=0.192 Sum_probs=51.8
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-c--CCcE-E--EEcCCchhHHHHHHHHh-CCCcc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-K--GAWA-A--LTFTNEKSLVNKVLEVS-GGKYA 233 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~--g~~~-~--~~~~~~~~~~~~i~~~~-~~~g~ 233 (296)
++++++|+|++|++|...++.+ ...|++|+.+.++.++.....+ . +... . .+..+..+..+.+.+.. ....+
T Consensus 4 ~~k~~lItG~sg~iG~~la~~l-~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~i 82 (252)
T PRK06138 4 AGRVAIVTGAGSGIGRATAKLF-AREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARWGRL 82 (252)
T ss_pred CCcEEEEeCCCchHHHHHHHHH-HHCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 4679999999999999988876 3469999999988776554332 2 2221 1 23333233333333321 12378
Q ss_pred cEEEECCCC
Q psy1959 234 NVVFEAVGG 242 (296)
Q Consensus 234 d~vld~~g~ 242 (296)
|+++.+.|.
T Consensus 83 d~vi~~ag~ 91 (252)
T PRK06138 83 DVLVNNAGF 91 (252)
T ss_pred CEEEECCCC
Confidence 999999984
No 214
>PLN02253 xanthoxin dehydrogenase
Probab=96.39 E-value=0.021 Score=50.58 Aligned_cols=81 Identities=20% Similarity=0.102 Sum_probs=51.9
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCC--cE---EEEcCCchhHHHHHHHHhC-CCcc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGA--WA---ALTFTNEKSLVNKVLEVSG-GKYA 233 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~--~~---~~~~~~~~~~~~~i~~~~~-~~g~ 233 (296)
.+++++|+|++|++|.+.++.+ ...|++|+++++++++.+.+. +++. .. ..+..+.....+.+.+... -.++
T Consensus 17 ~~k~~lItGas~gIG~~la~~l-~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g~i 95 (280)
T PLN02253 17 LGKVALVTGGATGIGESIVRLF-HKHGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKFGTL 95 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence 4789999999999999988777 347999999998776654443 2221 11 1333442333333333221 1369
Q ss_pred cEEEECCCC
Q psy1959 234 NVVFEAVGG 242 (296)
Q Consensus 234 d~vld~~g~ 242 (296)
|+++++.|.
T Consensus 96 d~li~~Ag~ 104 (280)
T PLN02253 96 DIMVNNAGL 104 (280)
T ss_pred CEEEECCCc
Confidence 999999874
No 215
>PRK07677 short chain dehydrogenase; Provisional
Probab=96.37 E-value=0.017 Score=50.28 Aligned_cols=80 Identities=14% Similarity=0.176 Sum_probs=52.3
Q ss_pred CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcE-EE--EcCCchhHHHHHHHHhC-CCcc
Q psy1959 162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWA-AL--TFTNEKSLVNKVLEVSG-GKYA 233 (296)
Q Consensus 162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~-~~--~~~~~~~~~~~i~~~~~-~~g~ 233 (296)
|++++|+|++|++|.+.++.+ ...|++|+++++++++.+.+.+ .+... .+ +..+..+..+.+.+... -..+
T Consensus 1 ~k~~lItG~s~giG~~ia~~l-~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRF-AEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRI 79 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 468999999999999988888 4579999999988776654432 22221 22 33332334333333321 1368
Q ss_pred cEEEECCCC
Q psy1959 234 NVVFEAVGG 242 (296)
Q Consensus 234 d~vld~~g~ 242 (296)
|+++++.|.
T Consensus 80 d~lI~~ag~ 88 (252)
T PRK07677 80 DALINNAAG 88 (252)
T ss_pred cEEEECCCC
Confidence 999999874
No 216
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.37 E-value=0.042 Score=51.19 Aligned_cols=90 Identities=22% Similarity=0.233 Sum_probs=60.0
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCCcEEEEcCCchhHHHHHHHHhCCCcccEEEEC
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEA 239 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~ 239 (296)
++.+|+|.|+ |.+|+.+++.+ +.+|++|++++++.++.+.+.+ ++........+ .+.+.+.. ..+|++|++
T Consensus 166 ~~~~VlViGa-G~vG~~aa~~a-~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~----~~~l~~~l--~~aDvVI~a 237 (370)
T TIGR00518 166 EPGDVTIIGG-GVVGTNAAKMA-NGLGATVTILDINIDRLRQLDAEFGGRIHTRYSN----AYEIEDAV--KRADLLIGA 237 (370)
T ss_pred CCceEEEEcC-CHHHHHHHHHH-HHCCCeEEEEECCHHHHHHHHHhcCceeEeccCC----HHHHHHHH--ccCCEEEEc
Confidence 3456899997 99999999999 6789999999998888877754 44432222222 12233333 268999999
Q ss_pred C---CC--c--cHHHHHHHhhccCceE
Q psy1959 240 V---GG--E--DKTDLIRQKGAWAALT 259 (296)
Q Consensus 240 ~---g~--~--~~~~~~~~lg~~~g~~ 259 (296)
+ +. . .....++.+ ++++.+
T Consensus 238 ~~~~g~~~p~lit~~~l~~m-k~g~vI 263 (370)
T TIGR00518 238 VLIPGAKAPKLVSNSLVAQM-KPGAVI 263 (370)
T ss_pred cccCCCCCCcCcCHHHHhcC-CCCCEE
Confidence 8 33 2 135666777 555443
No 217
>PRK07035 short chain dehydrogenase; Provisional
Probab=96.37 E-value=0.017 Score=50.13 Aligned_cols=81 Identities=16% Similarity=0.168 Sum_probs=52.0
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWAA---LTFTNEKSLVNKVLEVSG-GKY 232 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~~---~~~~~~~~~~~~i~~~~~-~~g 232 (296)
++.+++|+|++|++|.+.++.+ ...|++|+.++++.++.+.+.+ .+.... .+..+..+..+.+.+... -..
T Consensus 7 ~~k~vlItGas~gIG~~l~~~l-~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 85 (252)
T PRK07035 7 TGKIALVTGASRGIGEAIAKLL-AQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHGR 85 (252)
T ss_pred CCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 4678999999999999988888 4579999999988766544332 232221 233332333333333321 125
Q ss_pred ccEEEECCCC
Q psy1959 233 ANVVFEAVGG 242 (296)
Q Consensus 233 ~d~vld~~g~ 242 (296)
+|+++.+.|.
T Consensus 86 id~li~~ag~ 95 (252)
T PRK07035 86 LDILVNNAAA 95 (252)
T ss_pred CCEEEECCCc
Confidence 8999998873
No 218
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=96.36 E-value=0.017 Score=50.46 Aligned_cols=81 Identities=19% Similarity=0.184 Sum_probs=53.4
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG-GKY 232 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g 232 (296)
++++++|+|++|++|..+++.+ ...|++|++++++.++.+.+. ..+.... .+..+..++.+.+.+... ...
T Consensus 11 ~~k~ilItGa~g~IG~~la~~l-~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~~ 89 (259)
T PRK08213 11 SGKTALVTGGSRGLGLQIAEAL-GEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERFGH 89 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 5789999999999999988888 457999999999877665443 2232221 233332333333333221 136
Q ss_pred ccEEEECCCC
Q psy1959 233 ANVVFEAVGG 242 (296)
Q Consensus 233 ~d~vld~~g~ 242 (296)
+|.++.+.|.
T Consensus 90 id~vi~~ag~ 99 (259)
T PRK08213 90 VDILVNNAGA 99 (259)
T ss_pred CCEEEECCCC
Confidence 8999999874
No 219
>PRK07576 short chain dehydrogenase; Provisional
Probab=96.36 E-value=0.023 Score=50.01 Aligned_cols=80 Identities=15% Similarity=0.146 Sum_probs=52.9
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG-GKY 232 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g 232 (296)
++++++|+|++|++|...++.+ ...|++|+++++++++.+.+. +.+.... .+..+..+..+.+.+... ..+
T Consensus 8 ~~k~ilItGasggIG~~la~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~ 86 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAF-ARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGP 86 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 5789999999999999988877 457999999998877654332 2232221 233332344444444321 236
Q ss_pred ccEEEECCC
Q psy1959 233 ANVVFEAVG 241 (296)
Q Consensus 233 ~d~vld~~g 241 (296)
+|+++.+.|
T Consensus 87 iD~vi~~ag 95 (264)
T PRK07576 87 IDVLVSGAA 95 (264)
T ss_pred CCEEEECCC
Confidence 899999886
No 220
>PRK05876 short chain dehydrogenase; Provisional
Probab=96.35 E-value=0.019 Score=51.06 Aligned_cols=81 Identities=16% Similarity=0.078 Sum_probs=52.6
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG-GKY 232 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g 232 (296)
++++++|+|++|++|.+.+..+ ...|++|+++++++++.+.+. ..+.... .+..+..+..+.+.+... ...
T Consensus 5 ~~k~vlVTGas~gIG~ala~~L-a~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 83 (275)
T PRK05876 5 PGRGAVITGGASGIGLATGTEF-ARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLLGH 83 (275)
T ss_pred CCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 4789999999999999988877 457999999998877655432 2343222 233332333333333211 126
Q ss_pred ccEEEECCCC
Q psy1959 233 ANVVFEAVGG 242 (296)
Q Consensus 233 ~d~vld~~g~ 242 (296)
+|+++++.|.
T Consensus 84 id~li~nAg~ 93 (275)
T PRK05876 84 VDVVFSNAGI 93 (275)
T ss_pred CCEEEECCCc
Confidence 8999999883
No 221
>PRK06125 short chain dehydrogenase; Provisional
Probab=96.33 E-value=0.034 Score=48.62 Aligned_cols=78 Identities=18% Similarity=0.246 Sum_probs=51.7
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----c-CCcE-E--EEcCCchhHHHHHHHHhCCCc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----K-GAWA-A--LTFTNEKSLVNKVLEVSGGKY 232 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~-g~~~-~--~~~~~~~~~~~~i~~~~~~~g 232 (296)
.+++++|.|+++++|...++.+ ...|++|+++++++++.+.+.+ . +... . .+..+..+..+.+.. . ..
T Consensus 6 ~~k~vlItG~~~giG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~-~--g~ 81 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAF-AAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAE-A--GD 81 (259)
T ss_pred CCCEEEEeCCCchHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHH-h--CC
Confidence 4789999999999999988877 4579999999998776655432 1 2221 1 233332333333322 2 36
Q ss_pred ccEEEECCCC
Q psy1959 233 ANVVFEAVGG 242 (296)
Q Consensus 233 ~d~vld~~g~ 242 (296)
+|+++.+.|.
T Consensus 82 id~lv~~ag~ 91 (259)
T PRK06125 82 IDILVNNAGA 91 (259)
T ss_pred CCEEEECCCC
Confidence 9999999884
No 222
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=96.33 E-value=0.024 Score=49.42 Aligned_cols=81 Identities=20% Similarity=0.155 Sum_probs=52.4
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH----HhcCCcEEE---EcCCchhHHHHHHHHh-CCCc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI----RQKGAWAAL---TFTNEKSLVNKVLEVS-GGKY 232 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~----~~~g~~~~~---~~~~~~~~~~~i~~~~-~~~g 232 (296)
++++++|+|++|++|..+++.+ ...|++|+++++++++.+.+ ++.+....+ +..+...+.+.+.+.. ....
T Consensus 6 ~~~~vlItGasg~iG~~la~~l-~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 84 (262)
T PRK13394 6 NGKTAVVTGAASGIGKEIALEL-ARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFGS 84 (262)
T ss_pred CCCEEEEECCCChHHHHHHHHH-HHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 4789999999999999988877 45799999999988665443 233433222 2233233333333221 1136
Q ss_pred ccEEEECCCC
Q psy1959 233 ANVVFEAVGG 242 (296)
Q Consensus 233 ~d~vld~~g~ 242 (296)
+|+++.+.|.
T Consensus 85 ~d~vi~~ag~ 94 (262)
T PRK13394 85 VDILVSNAGI 94 (262)
T ss_pred CCEEEECCcc
Confidence 8999999874
No 223
>PRK05884 short chain dehydrogenase; Provisional
Probab=96.33 E-value=0.028 Score=48.27 Aligned_cols=75 Identities=19% Similarity=0.080 Sum_probs=50.9
Q ss_pred EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCcEE-EEcCCchhHHHHHHHHhCCCcccEEEECCC
Q psy1959 164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAWAA-LTFTNEKSLVNKVLEVSGGKYANVVFEAVG 241 (296)
Q Consensus 164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~~-~~~~~~~~~~~~i~~~~~~~g~d~vld~~g 241 (296)
+++|+|++|++|++.++.+ ...|++|+.+++++++.+.+. +.+...+ .+..+..+..+.+.+.. +.+|+++++.|
T Consensus 2 ~vlItGas~giG~~ia~~l-~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~--~~id~lv~~ag 78 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGF-RNDGHKVTLVGARRDDLEVAAKELDVDAIVCDNTDPASLEEARGLFP--HHLDTIVNVPA 78 (223)
T ss_pred eEEEEeCCchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHhccCcEEecCCCCHHHHHHHHHHHh--hcCcEEEECCC
Confidence 4899999999999988877 447999999999888776553 3343322 33444233444333332 26899999875
No 224
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=96.32 E-value=0.02 Score=51.97 Aligned_cols=80 Identities=23% Similarity=0.230 Sum_probs=52.1
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcC---CcE-E--EEcCCchhHHHHHHHHh-CCCc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKG---AWA-A--LTFTNEKSLVNKVLEVS-GGKY 232 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g---~~~-~--~~~~~~~~~~~~i~~~~-~~~g 232 (296)
.+++++|+|++|++|..+++.+ ...|++|+++++++++.+.+. ++. ... . .+..+..+..+.+.+.. ....
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L-~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~ 83 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKAL-AKRGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALGKP 83 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhCCC
Confidence 4788999999999999988777 446999999999887765443 221 111 1 23333233333333322 1235
Q ss_pred ccEEEECCC
Q psy1959 233 ANVVFEAVG 241 (296)
Q Consensus 233 ~d~vld~~g 241 (296)
+|+++++.|
T Consensus 84 iD~li~nAg 92 (322)
T PRK07453 84 LDALVCNAA 92 (322)
T ss_pred ccEEEECCc
Confidence 999999988
No 225
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=96.31 E-value=0.027 Score=48.92 Aligned_cols=78 Identities=19% Similarity=0.222 Sum_probs=52.7
Q ss_pred EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCCcEE---EEcCCchhHHHHHHHHhC-CCcccEEEE
Q psy1959 164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAWAA---LTFTNEKSLVNKVLEVSG-GKYANVVFE 238 (296)
Q Consensus 164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~d~vld 238 (296)
+++|+|++|++|.+.+..+ ...|++|+++++++++.+.+.+ .+.... .+..+..+..+.+.+... ..++|+++.
T Consensus 2 ~vlItGasg~iG~~la~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~ 80 (248)
T PRK10538 2 IVLVTGATAGFGECITRRF-IQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDVLVN 80 (248)
T ss_pred EEEEECCCchHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 6899999999999988888 4579999999998887766644 333221 233332333333333321 236999999
Q ss_pred CCCC
Q psy1959 239 AVGG 242 (296)
Q Consensus 239 ~~g~ 242 (296)
+.|.
T Consensus 81 ~ag~ 84 (248)
T PRK10538 81 NAGL 84 (248)
T ss_pred CCCc
Confidence 8874
No 226
>PRK07063 short chain dehydrogenase; Provisional
Probab=96.30 E-value=0.026 Score=49.33 Aligned_cols=81 Identities=21% Similarity=0.113 Sum_probs=52.7
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-c-----CCcE-E--EEcCCchhHHHHHHHHhC-C
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-K-----GAWA-A--LTFTNEKSLVNKVLEVSG-G 230 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~-----g~~~-~--~~~~~~~~~~~~i~~~~~-~ 230 (296)
.+++++|+|+++++|.++++.+ ...|++|+.+++++++.+.+.+ + +... . .+..+..+..+.+.+... -
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l-~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAF-AREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF 84 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 4689999999999999988877 4579999999998776654432 1 2211 1 233332333333333221 1
Q ss_pred CcccEEEECCCC
Q psy1959 231 KYANVVFEAVGG 242 (296)
Q Consensus 231 ~g~d~vld~~g~ 242 (296)
..+|+++.+.|.
T Consensus 85 g~id~li~~ag~ 96 (260)
T PRK07063 85 GPLDVLVNNAGI 96 (260)
T ss_pred CCCcEEEECCCc
Confidence 369999999884
No 227
>KOG1201|consensus
Probab=96.30 E-value=0.021 Score=50.82 Aligned_cols=78 Identities=23% Similarity=0.313 Sum_probs=51.6
Q ss_pred CCcEEEEEcCCCcHHHH-HHHHHHHhCCCEEEEEeCCcchH----HHHHhcCCcE--EEEcCCchhH---HHHHHHHhCC
Q psy1959 161 EKQTVLVTAAGGGLGLA-AVDMATKIYKAKVIGVCNSEDKT----DLIRQKGAWA--ALTFTNEKSL---VNKVLEVSGG 230 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~a-a~~la~~~~g~~Vi~~~~~~~~~----~~~~~~g~~~--~~~~~~~~~~---~~~i~~~~~~ 230 (296)
.|+.|||+|+++|+|++ +.++| + +|+++++.|.+++.. +.+++.|-.+ ..+..+.++. .+.+++..
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa-~-rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~-- 112 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFA-K-RGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEV-- 112 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHH-H-hCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhc--
Confidence 69999999999999987 66666 4 699999999876643 3444445222 2333432333 33344333
Q ss_pred CcccEEEECCCC
Q psy1959 231 KYANVVFEAVGG 242 (296)
Q Consensus 231 ~g~d~vld~~g~ 242 (296)
..+|+++++.|-
T Consensus 113 G~V~ILVNNAGI 124 (300)
T KOG1201|consen 113 GDVDILVNNAGI 124 (300)
T ss_pred CCceEEEecccc
Confidence 369999999983
No 228
>PRK08264 short chain dehydrogenase; Validated
Probab=96.30 E-value=0.031 Score=48.01 Aligned_cols=75 Identities=23% Similarity=0.254 Sum_probs=49.9
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCCcE-E--EEcCCchhHHHHHHHHhCCCcccEE
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWA-A--LTFTNEKSLVNKVLEVSGGKYANVV 236 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~~~-~--~~~~~~~~~~~~i~~~~~~~g~d~v 236 (296)
.+.+++|+|++|++|..+++.+ ...|+ +|++++++.++.+. .+... . .+..+..++.+.+.+ . ..+|++
T Consensus 5 ~~~~vlItGgsg~iG~~la~~l-~~~G~~~V~~~~r~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~-~--~~id~v 77 (238)
T PRK08264 5 KGKVVLVTGANRGIGRAFVEQL-LARGAAKVYAAARDPESVTD---LGPRVVPLQLDVTDPASVAAAAEA-A--SDVTIL 77 (238)
T ss_pred CCCEEEEECCCchHHHHHHHHH-HHCCcccEEEEecChhhhhh---cCCceEEEEecCCCHHHHHHHHHh-c--CCCCEE
Confidence 5678999999999999988887 45798 99999988766543 22221 1 233332333322222 2 358999
Q ss_pred EECCCC
Q psy1959 237 FEAVGG 242 (296)
Q Consensus 237 ld~~g~ 242 (296)
+.+.|.
T Consensus 78 i~~ag~ 83 (238)
T PRK08264 78 VNNAGI 83 (238)
T ss_pred EECCCc
Confidence 999886
No 229
>PRK09186 flagellin modification protein A; Provisional
Probab=96.29 E-value=0.026 Score=49.02 Aligned_cols=80 Identities=19% Similarity=0.132 Sum_probs=52.2
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hc----CCc---E-EEEcCCchhHHHHHHHHhC-C
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QK----GAW---A-ALTFTNEKSLVNKVLEVSG-G 230 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~----g~~---~-~~~~~~~~~~~~~i~~~~~-~ 230 (296)
++++++|+|++|++|.+.+..+ ...|++|+.+++++++.+.+. ++ +.. . ..+..+..+..+.+.+... -
T Consensus 3 ~~k~vlItGas~giG~~~a~~l-~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 81 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAI-LEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKY 81 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence 5789999999999999988887 457999999998877765442 21 211 1 2244442334343443321 1
Q ss_pred CcccEEEECCC
Q psy1959 231 KYANVVFEAVG 241 (296)
Q Consensus 231 ~g~d~vld~~g 241 (296)
..+|+++.+.+
T Consensus 82 ~~id~vi~~A~ 92 (256)
T PRK09186 82 GKIDGAVNCAY 92 (256)
T ss_pred CCccEEEECCc
Confidence 35899999886
No 230
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=96.28 E-value=0.025 Score=49.51 Aligned_cols=78 Identities=22% Similarity=0.199 Sum_probs=50.8
Q ss_pred EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcEE--EEcCCchhHHHHHHHHhC-CCcccEE
Q psy1959 164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWAA--LTFTNEKSLVNKVLEVSG-GKYANVV 236 (296)
Q Consensus 164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~~--~~~~~~~~~~~~i~~~~~-~~g~d~v 236 (296)
+++|+|+++++|.+.++.+ ...|++|+++++++++.+.+.+ .+.... .+..+..+..+.+.+... ...+|++
T Consensus 2 ~vlItGas~gIG~aia~~l-~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~l 80 (259)
T PRK08340 2 NVLVTASSRGIGFNVAREL-LKKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGIDAL 80 (259)
T ss_pred eEEEEcCCcHHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 6899999999999987777 4479999999998776654432 232122 233332344444443321 2368999
Q ss_pred EECCCC
Q psy1959 237 FEAVGG 242 (296)
Q Consensus 237 ld~~g~ 242 (296)
+++.|.
T Consensus 81 i~naG~ 86 (259)
T PRK08340 81 VWNAGN 86 (259)
T ss_pred EECCCC
Confidence 999884
No 231
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=96.27 E-value=0.041 Score=48.00 Aligned_cols=81 Identities=22% Similarity=0.193 Sum_probs=51.5
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH---hcCCcE---EEEcCCchhHHHHHHHHhC-CCcc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR---QKGAWA---ALTFTNEKSLVNKVLEVSG-GKYA 233 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~---~~g~~~---~~~~~~~~~~~~~i~~~~~-~~g~ 233 (296)
++++++|+|++|++|.++++.+ ...|++|+++++++...+... +.+... ..+..+..+..+.+.+... ...+
T Consensus 7 ~~k~vlVtGas~gIG~~la~~l-~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 85 (260)
T PRK12823 7 AGKVVVVTGAAQGIGRGVALRA-AAEGARVVLVDRSELVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAFGRI 85 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHcCCC
Confidence 4689999999999999988877 447999999998754333222 234332 1344442333333443321 2369
Q ss_pred cEEEECCCC
Q psy1959 234 NVVFEAVGG 242 (296)
Q Consensus 234 d~vld~~g~ 242 (296)
|+++.+.|.
T Consensus 86 d~lv~nAg~ 94 (260)
T PRK12823 86 DVLINNVGG 94 (260)
T ss_pred eEEEECCcc
Confidence 999999873
No 232
>PRK06482 short chain dehydrogenase; Provisional
Probab=96.27 E-value=0.03 Score=49.43 Aligned_cols=79 Identities=19% Similarity=0.206 Sum_probs=52.7
Q ss_pred cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhc-CCcE---EEEcCCchhHHHHHHHHh-CCCcccEEE
Q psy1959 163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK-GAWA---ALTFTNEKSLVNKVLEVS-GGKYANVVF 237 (296)
Q Consensus 163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~-g~~~---~~~~~~~~~~~~~i~~~~-~~~g~d~vl 237 (296)
++++|+|++|++|...++.+ ...|.+|+++++++++.+.+++. +... ..+..+.....+.+.+.. ...++|+++
T Consensus 3 k~vlVtGasg~IG~~la~~L-~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi 81 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERL-LARGDRVAATVRRPDALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAALGRIDVVV 81 (276)
T ss_pred CEEEEecCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 57999999999999988777 44799999999988877766543 2221 133333233334443322 123689999
Q ss_pred ECCCC
Q psy1959 238 EAVGG 242 (296)
Q Consensus 238 d~~g~ 242 (296)
.+.|.
T Consensus 82 ~~ag~ 86 (276)
T PRK06482 82 SNAGY 86 (276)
T ss_pred ECCCC
Confidence 99874
No 233
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.26 E-value=0.027 Score=49.44 Aligned_cols=81 Identities=7% Similarity=0.032 Sum_probs=50.3
Q ss_pred CCcEEEEEcCC--CcHHHHHHHHHHHhCCCEEEEEeCCcchH---HHHH-hcCCcEE--EEcCCchhHHHHHHHHhC-CC
Q psy1959 161 EKQTVLVTAAG--GGLGLAAVDMATKIYKAKVIGVCNSEDKT---DLIR-QKGAWAA--LTFTNEKSLVNKVLEVSG-GK 231 (296)
Q Consensus 161 ~g~~vlI~Ga~--g~vG~aa~~la~~~~g~~Vi~~~~~~~~~---~~~~-~~g~~~~--~~~~~~~~~~~~i~~~~~-~~ 231 (296)
+|++++|+|++ +++|.++++.+ ...|++|++++++++.. +.+. +++.... .+..+..+..+.+.+... -.
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~l-a~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 87 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAF-RALGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEWG 87 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHH-HHcCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHcC
Confidence 57899999997 49999988777 44799999998875432 2222 3332222 233332334444433322 13
Q ss_pred cccEEEECCCC
Q psy1959 232 YANVVFEAVGG 242 (296)
Q Consensus 232 g~d~vld~~g~ 242 (296)
.+|+++++.|.
T Consensus 88 ~ld~lv~nAg~ 98 (258)
T PRK07533 88 RLDFLLHSIAF 98 (258)
T ss_pred CCCEEEEcCcc
Confidence 69999999874
No 234
>PRK06398 aldose dehydrogenase; Validated
Probab=96.25 E-value=0.017 Score=50.57 Aligned_cols=76 Identities=17% Similarity=0.190 Sum_probs=50.0
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCc-EEEEcCCchhHHHHHHHHhC-CCcccEEEE
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAW-AALTFTNEKSLVNKVLEVSG-GKYANVVFE 238 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~i~~~~~-~~g~d~vld 238 (296)
.|++++|+|+++++|.+++..+ ...|++|+++++++++.. ... ...+..+..+..+.+.+... ...+|++++
T Consensus 5 ~gk~vlItGas~gIG~~ia~~l-~~~G~~Vi~~~r~~~~~~-----~~~~~~~D~~~~~~i~~~~~~~~~~~~~id~li~ 78 (258)
T PRK06398 5 KDKVAIVTGGSQGIGKAVVNRL-KEEGSNVINFDIKEPSYN-----DVDYFKVDVSNKEQVIKGIDYVISKYGRIDILVN 78 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHH-HHCCCeEEEEeCCccccC-----ceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 4689999999999999988887 457999999998765432 111 11233332344343433321 236999999
Q ss_pred CCCC
Q psy1959 239 AVGG 242 (296)
Q Consensus 239 ~~g~ 242 (296)
+.|.
T Consensus 79 ~Ag~ 82 (258)
T PRK06398 79 NAGI 82 (258)
T ss_pred CCCC
Confidence 8873
No 235
>PRK06181 short chain dehydrogenase; Provisional
Probab=96.25 E-value=0.023 Score=49.75 Aligned_cols=80 Identities=14% Similarity=0.139 Sum_probs=52.1
Q ss_pred CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC-CCcc
Q psy1959 162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG-GKYA 233 (296)
Q Consensus 162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~ 233 (296)
+.+++|+|++|++|..+++.+ ...|++|+.+++++++.+.+. ..+.... .+..+...+.+.+.+... -.++
T Consensus 1 ~~~vlVtGasg~iG~~la~~l-~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 79 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRL-ARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGI 79 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 357999999999999988887 457999999999876654332 2333222 223332333333443321 1368
Q ss_pred cEEEECCCC
Q psy1959 234 NVVFEAVGG 242 (296)
Q Consensus 234 d~vld~~g~ 242 (296)
|+++.+.|.
T Consensus 80 d~vi~~ag~ 88 (263)
T PRK06181 80 DILVNNAGI 88 (263)
T ss_pred CEEEECCCc
Confidence 999999874
No 236
>PRK12367 short chain dehydrogenase; Provisional
Probab=96.24 E-value=0.034 Score=48.58 Aligned_cols=74 Identities=19% Similarity=0.166 Sum_probs=47.6
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc-hHHHHHhcCCcEE--EEcCCchhHHHHHHHHhCCCcccEEE
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED-KTDLIRQKGAWAA--LTFTNEKSLVNKVLEVSGGKYANVVF 237 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~-~~~~~~~~g~~~~--~~~~~~~~~~~~i~~~~~~~g~d~vl 237 (296)
.+++++|+|++|++|.+.++.+ ...|++|+++++++. +.+... .+.... .+..+ . +.+.+.. ..+|+++
T Consensus 13 ~~k~~lITGas~gIG~ala~~l-~~~G~~Vi~~~r~~~~~~~~~~-~~~~~~~~~D~~~-~---~~~~~~~--~~iDilV 84 (245)
T PRK12367 13 QGKRIGITGASGALGKALTKAF-RAKGAKVIGLTHSKINNSESND-ESPNEWIKWECGK-E---ESLDKQL--ASLDVLI 84 (245)
T ss_pred CCCEEEEEcCCcHHHHHHHHHH-HHCCCEEEEEECCchhhhhhhc-cCCCeEEEeeCCC-H---HHHHHhc--CCCCEEE
Confidence 4689999999999999988877 457999999988762 222211 121122 23333 1 2233333 2699999
Q ss_pred ECCCC
Q psy1959 238 EAVGG 242 (296)
Q Consensus 238 d~~g~ 242 (296)
++.|.
T Consensus 85 nnAG~ 89 (245)
T PRK12367 85 LNHGI 89 (245)
T ss_pred ECCcc
Confidence 99984
No 237
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.085 Score=44.80 Aligned_cols=110 Identities=14% Similarity=0.102 Sum_probs=74.6
Q ss_pred hccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH----HhcCCcEE-EEcCC
Q psy1959 142 LADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI----RQKGAWAA-LTFTN 216 (296)
Q Consensus 142 l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~----~~~g~~~~-~~~~~ 216 (296)
+..+...|.- + +...+++|++||=+| +|.|+.++-+| ++.+ +|+.+.+.++-.+.+ +.+|...+ +...+
T Consensus 55 is~P~~vA~m-~-~~L~~~~g~~VLEIG--tGsGY~aAvla-~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gD 128 (209)
T COG2518 55 ISAPHMVARM-L-QLLELKPGDRVLEIG--TGSGYQAAVLA-RLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGD 128 (209)
T ss_pred ecCcHHHHHH-H-HHhCCCCCCeEEEEC--CCchHHHHHHH-HHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECC
Confidence 3344445542 2 778899999999998 56699999999 5444 999999888754444 55676433 22222
Q ss_pred chhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEeecc
Q psy1959 217 EKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFTNEK 264 (296)
Q Consensus 217 ~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~~~~ 264 (296)
- ...+.....+|.++-+.+- +.-...+++| +.+|+..++..
T Consensus 129 ---G---~~G~~~~aPyD~I~Vtaaa~~vP~~Ll~QL-~~gGrlv~PvG 170 (209)
T COG2518 129 ---G---SKGWPEEAPYDRIIVTAAAPEVPEALLDQL-KPGGRLVIPVG 170 (209)
T ss_pred ---c---ccCCCCCCCcCEEEEeeccCCCCHHHHHhc-ccCCEEEEEEc
Confidence 0 1111122468988887776 5668899999 99999977765
No 238
>PRK06172 short chain dehydrogenase; Provisional
Probab=96.24 E-value=0.025 Score=49.20 Aligned_cols=81 Identities=20% Similarity=0.145 Sum_probs=51.7
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH----HhcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI----RQKGAWAA---LTFTNEKSLVNKVLEVSG-GKY 232 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~----~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g 232 (296)
++++++|.|++|++|..+++.+ ...|++|+.+++++++.+.+ ++.+.... .+..+..+..+.+.+... ...
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l-~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~ 84 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAF-AREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYGR 84 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence 4689999999999999988777 34699999999987765433 23333221 223332233333333211 126
Q ss_pred ccEEEECCCC
Q psy1959 233 ANVVFEAVGG 242 (296)
Q Consensus 233 ~d~vld~~g~ 242 (296)
+|+++.+.|.
T Consensus 85 id~li~~ag~ 94 (253)
T PRK06172 85 LDYAFNNAGI 94 (253)
T ss_pred CCEEEECCCC
Confidence 8999999884
No 239
>PRK06114 short chain dehydrogenase; Provisional
Probab=96.22 E-value=0.033 Score=48.57 Aligned_cols=81 Identities=22% Similarity=0.145 Sum_probs=51.4
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch-HH----HHHhcCCcEE---EEcCCchhHHHHHHHHhC-CC
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK-TD----LIRQKGAWAA---LTFTNEKSLVNKVLEVSG-GK 231 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~-~~----~~~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~ 231 (296)
++++++|+|+++++|.++++.+ ...|++|+++++++++ .+ .++..+.... .+..+..+..+.+.+... ..
T Consensus 7 ~~k~~lVtG~s~gIG~~ia~~l-~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g 85 (254)
T PRK06114 7 DGQVAFVTGAGSGIGQRIAIGL-AQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAELG 85 (254)
T ss_pred CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 5789999999999999988877 4579999999986542 22 2233343221 233332333333333321 23
Q ss_pred cccEEEECCCC
Q psy1959 232 YANVVFEAVGG 242 (296)
Q Consensus 232 g~d~vld~~g~ 242 (296)
.+|+++.+.|.
T Consensus 86 ~id~li~~ag~ 96 (254)
T PRK06114 86 ALTLAVNAAGI 96 (254)
T ss_pred CCCEEEECCCC
Confidence 68999999984
No 240
>PRK07832 short chain dehydrogenase; Provisional
Probab=96.22 E-value=0.036 Score=48.90 Aligned_cols=78 Identities=19% Similarity=0.190 Sum_probs=50.5
Q ss_pred EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH----HhcCCcE----EEEcCCchhHHHHHHHHh-CCCccc
Q psy1959 164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI----RQKGAWA----ALTFTNEKSLVNKVLEVS-GGKYAN 234 (296)
Q Consensus 164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~----~~~g~~~----~~~~~~~~~~~~~i~~~~-~~~g~d 234 (296)
+++|+|++|++|..+++.+ ...|++|+++++++++.+.+ +..+... ..+..+..+..+.+.+.. ....+|
T Consensus 2 ~vlItGas~giG~~la~~l-a~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 80 (272)
T PRK07832 2 RCFVTGAASGIGRATALRL-AAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSMD 80 (272)
T ss_pred EEEEeCCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence 6899999999999988877 45799999999877765433 2233321 234444233333333321 123689
Q ss_pred EEEECCCC
Q psy1959 235 VVFEAVGG 242 (296)
Q Consensus 235 ~vld~~g~ 242 (296)
+++++.|.
T Consensus 81 ~lv~~ag~ 88 (272)
T PRK07832 81 VVMNIAGI 88 (272)
T ss_pred EEEECCCC
Confidence 99999984
No 241
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=96.17 E-value=0.026 Score=45.62 Aligned_cols=79 Identities=23% Similarity=0.274 Sum_probs=48.4
Q ss_pred cEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCC--cchHHHH----HhcCCcEEE---EcCCchhHHHHHHHHh-CCC
Q psy1959 163 QTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNS--EDKTDLI----RQKGAWAAL---TFTNEKSLVNKVLEVS-GGK 231 (296)
Q Consensus 163 ~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~--~~~~~~~----~~~g~~~~~---~~~~~~~~~~~i~~~~-~~~ 231 (296)
++++|+|+++++|.+.++.+.+ .|+ +|+.+.++ .++.+.+ ++.+....+ +..+..+....+.+.. ...
T Consensus 1 k~~lItGa~~giG~~~a~~l~~-~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALAR-RGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFG 79 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHH-TTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHS
T ss_pred CEEEEECCCCHHHHHHHHHHHh-cCceEEEEeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4789999999999997777734 455 77777777 3443333 334533222 2233233344444332 223
Q ss_pred cccEEEECCCC
Q psy1959 232 YANVVFEAVGG 242 (296)
Q Consensus 232 g~d~vld~~g~ 242 (296)
.+|++|.+.|.
T Consensus 80 ~ld~li~~ag~ 90 (167)
T PF00106_consen 80 PLDILINNAGI 90 (167)
T ss_dssp SESEEEEECSC
T ss_pred ccccccccccc
Confidence 69999999985
No 242
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.16 E-value=0.039 Score=49.05 Aligned_cols=81 Identities=9% Similarity=0.046 Sum_probs=51.8
Q ss_pred CCcEEEEEcCC--CcHHHHHHHHHHHhCCCEEEEEeCCcc---hHHHH-HhcCCcE--EEEcCCchhHHHHHHHHhC-CC
Q psy1959 161 EKQTVLVTAAG--GGLGLAAVDMATKIYKAKVIGVCNSED---KTDLI-RQKGAWA--ALTFTNEKSLVNKVLEVSG-GK 231 (296)
Q Consensus 161 ~g~~vlI~Ga~--g~vG~aa~~la~~~~g~~Vi~~~~~~~---~~~~~-~~~g~~~--~~~~~~~~~~~~~i~~~~~-~~ 231 (296)
.+++++|+|++ +++|+++++.+ ...|++|++.+++++ +.+.+ ++++... ..+..+..+..+.+.+... ..
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~l-a~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~i~~~~g 82 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKAC-FEQGAELAFTYLNEALKKRVEPIAQELGSDYVYELDVSKPEHFKSLAESLKKDLG 82 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHH-HHCCCEEEEEecCHHHHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHHHHcC
Confidence 47899999996 79999988777 447999999888743 33333 3344322 2344443344444444322 23
Q ss_pred cccEEEECCCC
Q psy1959 232 YANVVFEAVGG 242 (296)
Q Consensus 232 g~d~vld~~g~ 242 (296)
.+|+++++.|.
T Consensus 83 ~iDilVnnAG~ 93 (274)
T PRK08415 83 KIDFIVHSVAF 93 (274)
T ss_pred CCCEEEECCcc
Confidence 68999999984
No 243
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.15 E-value=0.035 Score=48.74 Aligned_cols=81 Identities=19% Similarity=0.157 Sum_probs=49.9
Q ss_pred CCcEEEEEcCCC--cHHHHHHHHHHHhCCCEEEEEeCCcc---hHHHHH-hcCCcEE--EEcCCchhHHHHHHHHhC-CC
Q psy1959 161 EKQTVLVTAAGG--GLGLAAVDMATKIYKAKVIGVCNSED---KTDLIR-QKGAWAA--LTFTNEKSLVNKVLEVSG-GK 231 (296)
Q Consensus 161 ~g~~vlI~Ga~g--~vG~aa~~la~~~~g~~Vi~~~~~~~---~~~~~~-~~g~~~~--~~~~~~~~~~~~i~~~~~-~~ 231 (296)
.|+.++|+|+++ ++|.++++.+ ...|++|+..+++++ ..+.+. +.+.... .+..+..+..+.+.+... -.
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~l-a~~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~g 85 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLA-KKHGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKWG 85 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHH-HHcCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHcC
Confidence 578999999986 8999987666 347999998887642 223332 2243222 344443344444443322 13
Q ss_pred cccEEEECCCC
Q psy1959 232 YANVVFEAVGG 242 (296)
Q Consensus 232 g~d~vld~~g~ 242 (296)
.+|+++++.|.
T Consensus 86 ~iDilVnnag~ 96 (260)
T PRK06603 86 SFDFLLHGMAF 96 (260)
T ss_pred CccEEEEcccc
Confidence 69999998873
No 244
>PRK08643 acetoin reductase; Validated
Probab=96.15 E-value=0.027 Score=49.00 Aligned_cols=80 Identities=25% Similarity=0.224 Sum_probs=52.1
Q ss_pred CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcEE---EEcCCchhHHHHHHHHh-CCCcc
Q psy1959 162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWAA---LTFTNEKSLVNKVLEVS-GGKYA 233 (296)
Q Consensus 162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~~---~~~~~~~~~~~~i~~~~-~~~g~ 233 (296)
+++++|+|++|++|...++.+ ...|++|+.+++++++.+.+.. .+.... .+..+.....+.+.+.. ...++
T Consensus 2 ~k~~lItGas~giG~~la~~l-~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 80 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRL-VEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDL 80 (256)
T ss_pred CCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 568999999999999988888 4579999999988776544432 232221 23333233333333332 12368
Q ss_pred cEEEECCCC
Q psy1959 234 NVVFEAVGG 242 (296)
Q Consensus 234 d~vld~~g~ 242 (296)
|+++.+.|.
T Consensus 81 d~vi~~ag~ 89 (256)
T PRK08643 81 NVVVNNAGV 89 (256)
T ss_pred CEEEECCCC
Confidence 999999874
No 245
>PRK09242 tropinone reductase; Provisional
Probab=96.15 E-value=0.021 Score=49.80 Aligned_cols=81 Identities=21% Similarity=0.190 Sum_probs=53.0
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----c--CCcEE---EEcCCchhHHHHHHHHh-CC
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----K--GAWAA---LTFTNEKSLVNKVLEVS-GG 230 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~--g~~~~---~~~~~~~~~~~~i~~~~-~~ 230 (296)
.+++++|+|++|++|..+++.+ ...|++|++++++.++.+.+.+ . +.... .+..+..+..+.+.+.. .-
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l-~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREF-LGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW 86 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4789999999999999988887 4579999999998876654432 1 22221 23333233333333322 12
Q ss_pred CcccEEEECCCC
Q psy1959 231 KYANVVFEAVGG 242 (296)
Q Consensus 231 ~g~d~vld~~g~ 242 (296)
..+|+++.+.|.
T Consensus 87 g~id~li~~ag~ 98 (257)
T PRK09242 87 DGLHILVNNAGG 98 (257)
T ss_pred CCCCEEEECCCC
Confidence 369999999985
No 246
>PRK07856 short chain dehydrogenase; Provisional
Probab=96.15 E-value=0.02 Score=49.85 Aligned_cols=77 Identities=18% Similarity=0.171 Sum_probs=50.0
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcE-E--EEcCCchhHHHHHHHHhC-CCcccEE
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWA-A--LTFTNEKSLVNKVLEVSG-GKYANVV 236 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~-~--~~~~~~~~~~~~i~~~~~-~~g~d~v 236 (296)
.+++++|+|++|++|.+.++.+ ...|++|+++++++++ ...+... . .+..+..+..+.+.+... ...+|++
T Consensus 5 ~~k~~lItGas~gIG~~la~~l-~~~g~~v~~~~r~~~~----~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v 79 (252)
T PRK07856 5 TGRVVLVTGGTRGIGAGIARAF-LAAGATVVVCGRRAPE----TVDGRPAEFHAADVRDPDQVAALVDAIVERHGRLDVL 79 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCChhh----hhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 5789999999999999988877 4479999999987655 1122211 1 233332334333333321 1368999
Q ss_pred EECCCC
Q psy1959 237 FEAVGG 242 (296)
Q Consensus 237 ld~~g~ 242 (296)
|.+.|.
T Consensus 80 i~~ag~ 85 (252)
T PRK07856 80 VNNAGG 85 (252)
T ss_pred EECCCC
Confidence 999874
No 247
>PRK08263 short chain dehydrogenase; Provisional
Probab=96.15 E-value=0.024 Score=50.07 Aligned_cols=80 Identities=18% Similarity=0.197 Sum_probs=52.6
Q ss_pred CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhc-CCcE-E--EEcCCchhHHHHHHHHhC-CCcccEE
Q psy1959 162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK-GAWA-A--LTFTNEKSLVNKVLEVSG-GKYANVV 236 (296)
Q Consensus 162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~-g~~~-~--~~~~~~~~~~~~i~~~~~-~~g~d~v 236 (296)
+.+++|+|++|++|..+++.+ ...|++|++++++.++.+.+.+. +... . .+..+..+..+.+.+... -.++|++
T Consensus 3 ~k~vlItGasg~iG~~~a~~l-~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~v 81 (275)
T PRK08263 3 EKVWFITGASRGFGRAWTEAA-LERGDRVVATARDTATLADLAEKYGDRLLPLALDVTDRAAVFAAVETAVEHFGRLDIV 81 (275)
T ss_pred CCEEEEeCCCChHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHhccCCeeEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 468999999999999988877 44699999999988877665543 2211 1 233332333333333211 1368999
Q ss_pred EECCCC
Q psy1959 237 FEAVGG 242 (296)
Q Consensus 237 ld~~g~ 242 (296)
+.+.|.
T Consensus 82 i~~ag~ 87 (275)
T PRK08263 82 VNNAGY 87 (275)
T ss_pred EECCCC
Confidence 999985
No 248
>PRK06198 short chain dehydrogenase; Provisional
Probab=96.14 E-value=0.028 Score=49.05 Aligned_cols=81 Identities=19% Similarity=0.156 Sum_probs=51.9
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCE-EEEEeCCcchHH----HHHhcCCcEE---EEcCCchhHHHHHHHHhC-CC
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAK-VIGVCNSEDKTD----LIRQKGAWAA---LTFTNEKSLVNKVLEVSG-GK 231 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~-Vi~~~~~~~~~~----~~~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~ 231 (296)
.+++++|.|++|++|..+++.+ ...|++ |++++++.++.. .+++.+.... .+..+...+.+.+..... -.
T Consensus 5 ~~k~vlItGa~g~iG~~la~~l-~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 83 (260)
T PRK06198 5 DGKVALVTGGTQGLGAAIARAF-AERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAFG 83 (260)
T ss_pred CCcEEEEeCCCchHHHHHHHHH-HHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 5688999999999999988888 457998 999998766554 2233343221 233332333333332211 12
Q ss_pred cccEEEECCCC
Q psy1959 232 YANVVFEAVGG 242 (296)
Q Consensus 232 g~d~vld~~g~ 242 (296)
++|+++.+.|.
T Consensus 84 ~id~li~~ag~ 94 (260)
T PRK06198 84 RLDALVNAAGL 94 (260)
T ss_pred CCCEEEECCCc
Confidence 69999999984
No 249
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.13 E-value=0.031 Score=52.04 Aligned_cols=82 Identities=16% Similarity=0.133 Sum_probs=56.9
Q ss_pred cEEEEEcCCCcHHHHHHHHHHHhCC-CEEEEEeCCcchHHHHHhcC---Cc-EEEEcCCchhHHHHHHHHhCCCcccEEE
Q psy1959 163 QTVLVTAAGGGLGLAAVDMATKIYK-AKVIGVCNSEDKTDLIRQKG---AW-AALTFTNEKSLVNKVLEVSGGKYANVVF 237 (296)
Q Consensus 163 ~~vlI~Ga~g~vG~aa~~la~~~~g-~~Vi~~~~~~~~~~~~~~~g---~~-~~~~~~~~~~~~~~i~~~~~~~g~d~vl 237 (296)
.+|+|+|+ |.+|+.+++.+ ...+ .+|++++++.++.+.+.+.. .. ..++..+ .+.+.++.. +.|+||
T Consensus 2 ~~ilviGa-G~Vg~~va~~l-a~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d----~~al~~li~--~~d~VI 73 (389)
T COG1748 2 MKILVIGA-GGVGSVVAHKL-AQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAAD----VDALVALIK--DFDLVI 73 (389)
T ss_pred CcEEEECC-chhHHHHHHHH-HhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccC----hHHHHHHHh--cCCEEE
Confidence 47899998 99999999987 3456 79999999999999987764 22 2244444 223333332 459999
Q ss_pred ECCCCccHHHHHHHh
Q psy1959 238 EAVGGEDKTDLIRQK 252 (296)
Q Consensus 238 d~~g~~~~~~~~~~l 252 (296)
++.....-..+++..
T Consensus 74 n~~p~~~~~~i~ka~ 88 (389)
T COG1748 74 NAAPPFVDLTILKAC 88 (389)
T ss_pred EeCCchhhHHHHHHH
Confidence 999985434555444
No 250
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.13 E-value=0.16 Score=42.55 Aligned_cols=76 Identities=20% Similarity=0.161 Sum_probs=50.1
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-c----CCcEE-EEcCCchhHHHHHHHHhCCCccc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-K----GAWAA-LTFTNEKSLVNKVLEVSGGKYAN 234 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~----g~~~~-~~~~~~~~~~~~i~~~~~~~g~d 234 (296)
++.+++|.|++|++|+.++..+ ...|++|+++.++.++.+.+.+ + +.... .+..+ . +.+.+.. .++|
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l-~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~---~-~~~~~~~--~~~d 99 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLL-AREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSD---D-AARAAAI--KGAD 99 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCC---H-HHHHHHH--hcCC
Confidence 6789999999999999887777 3468899999998877665543 2 22211 12222 1 1222222 3689
Q ss_pred EEEECCCCc
Q psy1959 235 VVFEAVGGE 243 (296)
Q Consensus 235 ~vld~~g~~ 243 (296)
++|.+....
T Consensus 100 iVi~at~~g 108 (194)
T cd01078 100 VVFAAGAAG 108 (194)
T ss_pred EEEECCCCC
Confidence 999988763
No 251
>PRK06197 short chain dehydrogenase; Provisional
Probab=96.13 E-value=0.024 Score=51.05 Aligned_cols=81 Identities=20% Similarity=0.177 Sum_probs=51.6
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH----Hh-c-CCcE-E--EEcCCchhHHHHHHHHhC-C
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI----RQ-K-GAWA-A--LTFTNEKSLVNKVLEVSG-G 230 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~----~~-~-g~~~-~--~~~~~~~~~~~~i~~~~~-~ 230 (296)
.+++++|+|++|++|.++++.+ ...|++|++++++.++.+.+ .+ . +... . .+..+..+..+.+.++.. .
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l-~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 93 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAAL-AAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAY 93 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhC
Confidence 5789999999999999988766 34699999999887765432 21 1 1211 1 233332333333333321 2
Q ss_pred CcccEEEECCCC
Q psy1959 231 KYANVVFEAVGG 242 (296)
Q Consensus 231 ~g~d~vld~~g~ 242 (296)
..+|+++.+.|.
T Consensus 94 ~~iD~li~nAg~ 105 (306)
T PRK06197 94 PRIDLLINNAGV 105 (306)
T ss_pred CCCCEEEECCcc
Confidence 369999999873
No 252
>PRK07791 short chain dehydrogenase; Provisional
Probab=96.12 E-value=0.039 Score=49.27 Aligned_cols=82 Identities=21% Similarity=0.128 Sum_probs=51.3
Q ss_pred CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc---------chHHHH----HhcCCcEE---EEcCCchhHHHH
Q psy1959 160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE---------DKTDLI----RQKGAWAA---LTFTNEKSLVNK 223 (296)
Q Consensus 160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~---------~~~~~~----~~~g~~~~---~~~~~~~~~~~~ 223 (296)
-++++++|+|+++++|.+.++.+ ...|++|++++++. ++.+.+ ++.+.... .+..+..+..+.
T Consensus 4 l~~k~~lITGas~GIG~aia~~l-a~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~ 82 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAF-AAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANL 82 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHH
Confidence 36789999999999999988776 44799999887654 333322 22233222 233332333444
Q ss_pred HHHHhC-CCcccEEEECCCC
Q psy1959 224 VLEVSG-GKYANVVFEAVGG 242 (296)
Q Consensus 224 i~~~~~-~~g~d~vld~~g~ 242 (296)
+.+... ...+|+++++.|.
T Consensus 83 ~~~~~~~~g~id~lv~nAG~ 102 (286)
T PRK07791 83 VDAAVETFGGLDVLVNNAGI 102 (286)
T ss_pred HHHHHHhcCCCCEEEECCCC
Confidence 433321 1369999999884
No 253
>PRK07074 short chain dehydrogenase; Provisional
Probab=96.12 E-value=0.037 Score=48.17 Aligned_cols=80 Identities=23% Similarity=0.255 Sum_probs=51.8
Q ss_pred CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cC---CcE-EEEcCCchhHHHHHHHHhC-CCcccE
Q psy1959 162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KG---AWA-ALTFTNEKSLVNKVLEVSG-GKYANV 235 (296)
Q Consensus 162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g---~~~-~~~~~~~~~~~~~i~~~~~-~~g~d~ 235 (296)
+++++|+|++|++|...+..+ ...|++|++++++.++.+.+.+ .. +.. ..+..+..+....+.+... ..++|+
T Consensus 2 ~k~ilItGat~~iG~~la~~L-~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~ 80 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRF-LAAGDRVLALDIDAAALAAFADALGDARFVPVACDLTDAASLAAALANAAAERGPVDV 80 (257)
T ss_pred CCEEEEECCcchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 468999999999999988777 3479999999998777654433 21 111 1333332333333433321 136899
Q ss_pred EEECCCC
Q psy1959 236 VFEAVGG 242 (296)
Q Consensus 236 vld~~g~ 242 (296)
++.+.|.
T Consensus 81 vi~~ag~ 87 (257)
T PRK07074 81 LVANAGA 87 (257)
T ss_pred EEECCCC
Confidence 9999985
No 254
>PRK06101 short chain dehydrogenase; Provisional
Probab=96.11 E-value=0.028 Score=48.66 Aligned_cols=76 Identities=17% Similarity=0.138 Sum_probs=50.1
Q ss_pred cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCc-E--EEEcCCchhHHHHHHHHhCCCcccEEEEC
Q psy1959 163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAW-A--ALTFTNEKSLVNKVLEVSGGKYANVVFEA 239 (296)
Q Consensus 163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~-~--~~~~~~~~~~~~~i~~~~~~~g~d~vld~ 239 (296)
.+++|+|++|++|...+..+ ...|++|+++++++++.+.+.+.+.. . ..+..+..+..+.+.+.. ...|.++.+
T Consensus 2 ~~vlItGas~giG~~la~~L-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~d~~i~~ 78 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDY-AKQGWQVIACGRNQSVLDELHTQSANIFTLAFDVTDHPGTKAALSQLP--FIPELWIFN 78 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHH-HhCCCEEEEEECCHHHHHHHHHhcCCCeEEEeeCCCHHHHHHHHHhcc--cCCCEEEEc
Confidence 57899999999999877666 34799999999998887777654321 1 234444234444443332 246777776
Q ss_pred CC
Q psy1959 240 VG 241 (296)
Q Consensus 240 ~g 241 (296)
.|
T Consensus 79 ag 80 (240)
T PRK06101 79 AG 80 (240)
T ss_pred Cc
Confidence 65
No 255
>PRK08251 short chain dehydrogenase; Provisional
Probab=96.07 E-value=0.043 Score=47.45 Aligned_cols=80 Identities=18% Similarity=0.210 Sum_probs=51.5
Q ss_pred CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----c--CCcEE---EEcCCchhHHHHHHHHhC-CC
Q psy1959 162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----K--GAWAA---LTFTNEKSLVNKVLEVSG-GK 231 (296)
Q Consensus 162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~--g~~~~---~~~~~~~~~~~~i~~~~~-~~ 231 (296)
+++++|+|++|++|...++.+ ...|++|+++++++++.+.+.+ . +.... .+..+..+..+.+.+... -.
T Consensus 2 ~k~vlItGas~giG~~la~~l-~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREF-AAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 468999999999999877766 3468999999998877654432 1 22211 233332344444443321 23
Q ss_pred cccEEEECCCC
Q psy1959 232 YANVVFEAVGG 242 (296)
Q Consensus 232 g~d~vld~~g~ 242 (296)
++|+++.+.|.
T Consensus 81 ~id~vi~~ag~ 91 (248)
T PRK08251 81 GLDRVIVNAGI 91 (248)
T ss_pred CCCEEEECCCc
Confidence 68999999873
No 256
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=96.06 E-value=0.029 Score=48.93 Aligned_cols=81 Identities=20% Similarity=0.163 Sum_probs=53.4
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCCcEE---EEcCCchhHHHHHHHHhC-CCcccE
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAWAA---LTFTNEKSLVNKVLEVSG-GKYANV 235 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~d~ 235 (296)
.+++++|+|++|++|..+++.+ ...|++|+.++++.++.+.+.+ .+.... .+..+..+....+.+... ...+|+
T Consensus 5 ~~~~vlItGas~~iG~~ia~~l-~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 83 (257)
T PRK07067 5 QGKVALLTGAASGIGEAVAERY-LAEGARVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVERFGGIDI 83 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHH-HHcCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 4678999999999999988888 4579999999998887765543 332211 223332333333333211 136899
Q ss_pred EEECCCC
Q psy1959 236 VFEAVGG 242 (296)
Q Consensus 236 vld~~g~ 242 (296)
++.+.|.
T Consensus 84 li~~ag~ 90 (257)
T PRK07067 84 LFNNAAL 90 (257)
T ss_pred EEECCCc
Confidence 9998874
No 257
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=96.06 E-value=0.033 Score=48.56 Aligned_cols=80 Identities=18% Similarity=0.072 Sum_probs=50.6
Q ss_pred CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-----cCCcE--E--EEcCCchhHHHHHHHHhC-CC
Q psy1959 162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-----KGAWA--A--LTFTNEKSLVNKVLEVSG-GK 231 (296)
Q Consensus 162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-----~g~~~--~--~~~~~~~~~~~~i~~~~~-~~ 231 (296)
+++++|+|++|++|.+.+..+ ...|++|+.++++..+.+.+.+ .+... . .+..+..+....+.++.. -.
T Consensus 2 ~k~ilItG~~~~IG~~la~~l-~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 80 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGL-AEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG 80 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 468999999999999988877 4579999999988776544322 12111 1 233332333333333321 13
Q ss_pred cccEEEECCCC
Q psy1959 232 YANVVFEAVGG 242 (296)
Q Consensus 232 g~d~vld~~g~ 242 (296)
.+|+++.+.|.
T Consensus 81 ~id~vv~~ag~ 91 (259)
T PRK12384 81 RVDLLVYNAGI 91 (259)
T ss_pred CCCEEEECCCc
Confidence 68999999873
No 258
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=96.05 E-value=0.033 Score=48.09 Aligned_cols=81 Identities=22% Similarity=0.158 Sum_probs=51.1
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH----HhcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI----RQKGAWAA---LTFTNEKSLVNKVLEVSG-GKY 232 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~----~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g 232 (296)
.+.+++|+|++|.+|...+..+ ...|++|++++++.++...+ ++.+.... .+..+..+..+.+.+... -..
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l-~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 83 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRL-AADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFGR 83 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 4678999999999999988777 44699999999986554332 33333221 223332333333333221 126
Q ss_pred ccEEEECCCC
Q psy1959 233 ANVVFEAVGG 242 (296)
Q Consensus 233 ~d~vld~~g~ 242 (296)
+|.++.+.|.
T Consensus 84 ~d~vi~~ag~ 93 (251)
T PRK12826 84 LDILVANAGI 93 (251)
T ss_pred CCEEEECCCC
Confidence 8999999865
No 259
>PRK07806 short chain dehydrogenase; Provisional
Probab=96.05 E-value=0.046 Score=47.29 Aligned_cols=81 Identities=20% Similarity=0.207 Sum_probs=50.1
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc-hHHH----HHhcCCcE-E--EEcCCchhHHHHHHHHhC-CC
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED-KTDL----IRQKGAWA-A--LTFTNEKSLVNKVLEVSG-GK 231 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~-~~~~----~~~~g~~~-~--~~~~~~~~~~~~i~~~~~-~~ 231 (296)
.+++++|+|++|++|...+..+ ...|.+|++++++.+ +.+. ++..+... . .+..+..+....+.+... ..
T Consensus 5 ~~k~vlItGasggiG~~l~~~l-~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (248)
T PRK07806 5 PGKTALVTGSSRGIGADTAKIL-AGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFG 83 (248)
T ss_pred CCcEEEEECCCCcHHHHHHHHH-HHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 4679999999999999988877 457999998887643 3322 22223222 1 233442333333333321 13
Q ss_pred cccEEEECCCC
Q psy1959 232 YANVVFEAVGG 242 (296)
Q Consensus 232 g~d~vld~~g~ 242 (296)
++|+++.+.|.
T Consensus 84 ~~d~vi~~ag~ 94 (248)
T PRK07806 84 GLDALVLNASG 94 (248)
T ss_pred CCcEEEECCCC
Confidence 68999988864
No 260
>PRK06523 short chain dehydrogenase; Provisional
Probab=96.04 E-value=0.024 Score=49.47 Aligned_cols=78 Identities=21% Similarity=0.208 Sum_probs=48.6
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCc-EEEEcCCchhHHHHHHHHhC-CCcccEEEE
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAW-AALTFTNEKSLVNKVLEVSG-GKYANVVFE 238 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~i~~~~~-~~g~d~vld 238 (296)
++++++|+|++|++|...++.+ ...|++|+++++++++.. ..... ...+..+..+..+.+.+... ...+|++++
T Consensus 8 ~~k~vlItGas~gIG~~ia~~l-~~~G~~v~~~~r~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~ 83 (260)
T PRK06523 8 AGKRALVTGGTKGIGAATVARL-LEAGARVVTTARSRPDDL---PEGVEFVAADLTTAEGCAAVARAVLERLGGVDILVH 83 (260)
T ss_pred CCCEEEEECCCCchhHHHHHHH-HHCCCEEEEEeCChhhhc---CCceeEEecCCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 5789999999999999988877 447999999998754321 11111 11233332233332322211 236899999
Q ss_pred CCCC
Q psy1959 239 AVGG 242 (296)
Q Consensus 239 ~~g~ 242 (296)
+.|.
T Consensus 84 ~ag~ 87 (260)
T PRK06523 84 VLGG 87 (260)
T ss_pred CCcc
Confidence 9883
No 261
>PRK06720 hypothetical protein; Provisional
Probab=96.04 E-value=0.071 Score=43.93 Aligned_cols=81 Identities=16% Similarity=0.133 Sum_probs=51.4
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH----HhcCCcE-E--EEcCCchhHHHHHHHHh-CCCc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI----RQKGAWA-A--LTFTNEKSLVNKVLEVS-GGKY 232 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~----~~~g~~~-~--~~~~~~~~~~~~i~~~~-~~~g 232 (296)
++..++|.|+++++|.+.+..+ ...|++|++++++++..+.. .+.+... . .+..+..++.+.+.+.. .-..
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l-~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~G~ 93 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLL-AKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAFSR 93 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 5789999999999999987766 44799999999876654332 2224332 2 22223233333333322 1236
Q ss_pred ccEEEECCCC
Q psy1959 233 ANVVFEAVGG 242 (296)
Q Consensus 233 ~d~vld~~g~ 242 (296)
+|+++++.|.
T Consensus 94 iDilVnnAG~ 103 (169)
T PRK06720 94 IDMLFQNAGL 103 (169)
T ss_pred CCEEEECCCc
Confidence 8999999984
No 262
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.03 E-value=0.045 Score=52.95 Aligned_cols=83 Identities=17% Similarity=0.178 Sum_probs=57.7
Q ss_pred CCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEE
Q psy1959 158 KLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVF 237 (296)
Q Consensus 158 ~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vl 237 (296)
.+.++++|+|+|. |..|+++++++ +..|++|++.|..+.+.+.+++.|+.. +.... ..+.+ ..+|+++
T Consensus 8 ~~~~~~~v~V~G~-G~sG~aa~~~L-~~~G~~v~~~D~~~~~~~~l~~~g~~~-~~~~~---~~~~l------~~~D~VV 75 (488)
T PRK03369 8 PLLPGAPVLVAGA-GVTGRAVLAAL-TRFGARPTVCDDDPDALRPHAERGVAT-VSTSD---AVQQI------ADYALVV 75 (488)
T ss_pred cccCCCeEEEEcC-CHHHHHHHHHH-HHCCCEEEEEcCCHHHHHHHHhCCCEE-EcCcc---hHhHh------hcCCEEE
Confidence 3557899999997 99999999999 668999999997766666677777743 22211 11111 2579999
Q ss_pred ECCCCccHHHHHHHh
Q psy1959 238 EAVGGEDKTDLIRQK 252 (296)
Q Consensus 238 d~~g~~~~~~~~~~l 252 (296)
.+.|-+.-...++..
T Consensus 76 ~SpGi~~~~p~~~~a 90 (488)
T PRK03369 76 TSPGFRPTAPVLAAA 90 (488)
T ss_pred ECCCCCCCCHHHHHH
Confidence 999975433334443
No 263
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=96.03 E-value=0.042 Score=47.91 Aligned_cols=81 Identities=12% Similarity=0.111 Sum_probs=50.5
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc--hHHHHHhcCCcEE---EEcCCchhHHHHHHHHhC-CCccc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED--KTDLIRQKGAWAA---LTFTNEKSLVNKVLEVSG-GKYAN 234 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~--~~~~~~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~d 234 (296)
+|++++|+|++|++|.++++.+ ...|++|+.+++.+. ..+.+++.+.... .+..+.++..+.+.+... ...+|
T Consensus 9 ~~k~~lItG~~~gIG~a~a~~l-~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~D 87 (253)
T PRK08993 9 EGKVAVVTGCDTGLGQGMALGL-AEAGCDIVGINIVEPTETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAEFGHID 87 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEecCcchHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence 4789999999999999988877 447999998775432 2233444443222 222332333333333321 13689
Q ss_pred EEEECCCC
Q psy1959 235 VVFEAVGG 242 (296)
Q Consensus 235 ~vld~~g~ 242 (296)
+++++.|.
T Consensus 88 ~li~~Ag~ 95 (253)
T PRK08993 88 ILVNNAGL 95 (253)
T ss_pred EEEECCCC
Confidence 99999984
No 264
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.03 E-value=0.035 Score=50.31 Aligned_cols=72 Identities=19% Similarity=0.158 Sum_probs=50.1
Q ss_pred EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEE-EcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959 164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAAL-TFTNEKSLVNKVLEVSGGKYANVVFEAVGG 242 (296)
Q Consensus 164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~i~~~~~~~g~d~vld~~g~ 242 (296)
+|+|+|++|-+|..+++.+ ...|.+|++++++.++...+...+...+. +..+ .+.+.+.. +++|+|+++++.
T Consensus 2 kIlVtGatG~iG~~lv~~L-l~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d----~~~l~~al--~g~d~Vi~~~~~ 74 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQA-LDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSL----PETLPPSF--KGVTAIIDASTS 74 (317)
T ss_pred EEEEECCCcHHHHHHHHHH-HHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCC----HHHHHHHH--CCCCEEEECCCC
Confidence 6999999999999998887 45799999999987766655555553322 2223 22333433 268999998763
No 265
>PRK08226 short chain dehydrogenase; Provisional
Probab=96.03 E-value=0.037 Score=48.37 Aligned_cols=81 Identities=16% Similarity=0.176 Sum_probs=51.3
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh---cCCcEE---EEcCCchhHHHHHHHHh-CCCcc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ---KGAWAA---LTFTNEKSLVNKVLEVS-GGKYA 233 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~---~g~~~~---~~~~~~~~~~~~i~~~~-~~~g~ 233 (296)
++.+++|+|++|++|.+.++.+ ...|++|+.++++++..+.+++ .+.... .+..+..+..+.+.+.. ....+
T Consensus 5 ~~~~~lItG~s~giG~~la~~l-~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~i 83 (263)
T PRK08226 5 TGKTALITGALQGIGEGIARVF-ARHGANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEGRI 83 (263)
T ss_pred CCCEEEEeCCCChHHHHHHHHH-HHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 4689999999999999988887 4579999999987654333322 232221 23333233333333321 12368
Q ss_pred cEEEECCCC
Q psy1959 234 NVVFEAVGG 242 (296)
Q Consensus 234 d~vld~~g~ 242 (296)
|+++.+.|.
T Consensus 84 d~vi~~ag~ 92 (263)
T PRK08226 84 DILVNNAGV 92 (263)
T ss_pred CEEEECCCc
Confidence 999999883
No 266
>PRK08303 short chain dehydrogenase; Provisional
Probab=96.02 E-value=0.043 Score=49.63 Aligned_cols=80 Identities=14% Similarity=0.137 Sum_probs=50.3
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc----------chHHH----HHhcCCcEE---EEcCCchhHHHH
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE----------DKTDL----IRQKGAWAA---LTFTNEKSLVNK 223 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~----------~~~~~----~~~~g~~~~---~~~~~~~~~~~~ 223 (296)
.+++++|+|+++++|+++++.+ ...|++|+++++++ ++.+. +...+.... .+..+..+....
T Consensus 7 ~~k~~lITGgs~GIG~aia~~l-a~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~ 85 (305)
T PRK08303 7 RGKVALVAGATRGAGRGIAVEL-GAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRAL 85 (305)
T ss_pred CCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence 5789999999999999988877 45799999998863 23332 223333221 233332333333
Q ss_pred HHHHhC-CCcccEEEECC-C
Q psy1959 224 VLEVSG-GKYANVVFEAV-G 241 (296)
Q Consensus 224 i~~~~~-~~g~d~vld~~-g 241 (296)
+.+... -..+|+++++. |
T Consensus 86 ~~~~~~~~g~iDilVnnA~g 105 (305)
T PRK08303 86 VERIDREQGRLDILVNDIWG 105 (305)
T ss_pred HHHHHHHcCCccEEEECCcc
Confidence 333322 12689999988 5
No 267
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=96.02 E-value=0.038 Score=48.05 Aligned_cols=81 Identities=17% Similarity=0.247 Sum_probs=52.5
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG-GKY 232 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g 232 (296)
.+++++|+|++|++|.++++.+ ...|++|+.+++++++...+. +.+.... .+..+..+..+.+.+... -..
T Consensus 8 ~~k~~lItGas~giG~~ia~~L-~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 86 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGL-AEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIGP 86 (254)
T ss_pred CCCEEEEECCCChHHHHHHHHH-HHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhcCC
Confidence 5789999999999999988877 447999999998877654432 2232221 233332333333333221 136
Q ss_pred ccEEEECCCC
Q psy1959 233 ANVVFEAVGG 242 (296)
Q Consensus 233 ~d~vld~~g~ 242 (296)
+|+++.+.|.
T Consensus 87 id~vi~~ag~ 96 (254)
T PRK08085 87 IDVLINNAGI 96 (254)
T ss_pred CCEEEECCCc
Confidence 8999999984
No 268
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.01 E-value=0.035 Score=48.84 Aligned_cols=81 Identities=6% Similarity=0.076 Sum_probs=49.4
Q ss_pred CCcEEEEEcC--CCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcEE--EEcCCchhHHHHHHHHhC-CC
Q psy1959 161 EKQTVLVTAA--GGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWAA--LTFTNEKSLVNKVLEVSG-GK 231 (296)
Q Consensus 161 ~g~~vlI~Ga--~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~~--~~~~~~~~~~~~i~~~~~-~~ 231 (296)
++++++|+|+ ++++|.+.++.+ ...|++|++..+.++..+.+++ .+.... .+..+.++..+.+.+... -.
T Consensus 5 ~~k~~lITGa~~~~GIG~a~a~~l-~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 83 (261)
T PRK08690 5 QGKKILITGMISERSIAYGIAKAC-REQGAELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKHWD 83 (261)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHH-HHCCCEEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHHhC
Confidence 5789999996 579999977777 4579999987665432233322 232222 233332344444433322 13
Q ss_pred cccEEEECCCC
Q psy1959 232 YANVVFEAVGG 242 (296)
Q Consensus 232 g~d~vld~~g~ 242 (296)
++|+++++.|.
T Consensus 84 ~iD~lVnnAG~ 94 (261)
T PRK08690 84 GLDGLVHSIGF 94 (261)
T ss_pred CCcEEEECCcc
Confidence 69999999885
No 269
>PRK08703 short chain dehydrogenase; Provisional
Probab=96.01 E-value=0.055 Score=46.61 Aligned_cols=80 Identities=23% Similarity=0.261 Sum_probs=51.2
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCC-c---EEEEcCC--chhHH---HHHHHH
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGA-W---AALTFTN--EKSLV---NKVLEV 227 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~-~---~~~~~~~--~~~~~---~~i~~~ 227 (296)
++++++|+|++|++|...++.+ ...|++|+++++++++.+.+.+ .+. . ...+..+ ..++. +.+.+.
T Consensus 5 ~~k~vlItG~sggiG~~la~~l-~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~ 83 (239)
T PRK08703 5 SDKTILVTGASQGLGEQVAKAY-AAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEA 83 (239)
T ss_pred CCCEEEEECCCCcHHHHHHHHH-HHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHH
Confidence 4679999999999999988877 4579999999998876654422 221 1 1122211 12222 233333
Q ss_pred hCCCcccEEEECCCC
Q psy1959 228 SGGKYANVVFEAVGG 242 (296)
Q Consensus 228 ~~~~g~d~vld~~g~ 242 (296)
.. ..+|.++.+.|.
T Consensus 84 ~~-~~id~vi~~ag~ 97 (239)
T PRK08703 84 TQ-GKLDGIVHCAGY 97 (239)
T ss_pred hC-CCCCEEEEeccc
Confidence 31 268999999884
No 270
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=96.00 E-value=0.047 Score=47.49 Aligned_cols=81 Identities=19% Similarity=0.239 Sum_probs=53.1
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcE-E--EEcCCchhHHHHHHHHhC-CCc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWA-A--LTFTNEKSLVNKVLEVSG-GKY 232 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~-~--~~~~~~~~~~~~i~~~~~-~~g 232 (296)
++++++|.|++|++|..+++.+ ...|++|+.+++++++.+.+. +.+... . .+..+..+....+.+... -..
T Consensus 10 ~~k~ilItGas~~IG~~la~~l-~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 88 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARAL-AGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEHGR 88 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHH-HHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 5889999999999999988877 347999999999876654432 233222 1 233332333433433321 136
Q ss_pred ccEEEECCCC
Q psy1959 233 ANVVFEAVGG 242 (296)
Q Consensus 233 ~d~vld~~g~ 242 (296)
+|+++.+.|.
T Consensus 89 id~vi~~ag~ 98 (256)
T PRK06124 89 LDILVNNVGA 98 (256)
T ss_pred CCEEEECCCC
Confidence 8999999884
No 271
>PRK06484 short chain dehydrogenase; Validated
Probab=96.00 E-value=0.032 Score=54.15 Aligned_cols=81 Identities=14% Similarity=0.181 Sum_probs=55.4
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCCcEE---EEcCCchhHHHHHHHHhC-CCcccE
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAWAA---LTFTNEKSLVNKVLEVSG-GKYANV 235 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~d~ 235 (296)
.+++++|+|+++++|++.++.+ ...|++|+++++++++.+.+.+ .+.... .+..+..+..+.+.+... -..+|+
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~ 346 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRF-AAAGDRLLIIDRDAEGAKKLAEALGDEHLSVQADITDEAAVESAFAQIQARWGRLDV 346 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 5789999999999999988777 4479999999998887776654 343221 233332334333433321 136899
Q ss_pred EEECCCC
Q psy1959 236 VFEAVGG 242 (296)
Q Consensus 236 vld~~g~ 242 (296)
++.+.|.
T Consensus 347 li~nAg~ 353 (520)
T PRK06484 347 LVNNAGI 353 (520)
T ss_pred EEECCCC
Confidence 9999884
No 272
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.99 E-value=0.045 Score=48.31 Aligned_cols=81 Identities=10% Similarity=0.092 Sum_probs=49.6
Q ss_pred CCcEEEEEcCCC--cHHHHHHHHHHHhCCCEEEEEeCCcc---hHHHHHh-cCCcEE--EEcCCchhHHHHHHHHhCC-C
Q psy1959 161 EKQTVLVTAAGG--GLGLAAVDMATKIYKAKVIGVCNSED---KTDLIRQ-KGAWAA--LTFTNEKSLVNKVLEVSGG-K 231 (296)
Q Consensus 161 ~g~~vlI~Ga~g--~vG~aa~~la~~~~g~~Vi~~~~~~~---~~~~~~~-~g~~~~--~~~~~~~~~~~~i~~~~~~-~ 231 (296)
++++++|+|+++ ++|.++++.+ ...|++|+..+++++ ..+.+.. .+.... .+..+..+....+.+.... .
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~l-a~~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 83 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAM-HREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKVWP 83 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHH-HHCCCEEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhhcC
Confidence 578999999975 8999877776 447999998887632 2222322 222122 3334434444444443322 2
Q ss_pred cccEEEECCCC
Q psy1959 232 YANVVFEAVGG 242 (296)
Q Consensus 232 g~d~vld~~g~ 242 (296)
.+|+++++.|.
T Consensus 84 ~iD~linnAg~ 94 (262)
T PRK07984 84 KFDGFVHSIGF 94 (262)
T ss_pred CCCEEEECCcc
Confidence 58999999984
No 273
>PRK08278 short chain dehydrogenase; Provisional
Probab=95.97 E-value=0.039 Score=48.82 Aligned_cols=81 Identities=17% Similarity=0.181 Sum_probs=50.5
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch-------HH----HHHhcCCcEE---EEcCCchhHHHHHHH
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK-------TD----LIRQKGAWAA---LTFTNEKSLVNKVLE 226 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~-------~~----~~~~~g~~~~---~~~~~~~~~~~~i~~ 226 (296)
.+++++|+|++|++|...++.+ ...|++|++++++.++ .+ .+++.+.... .+..+.....+.+.+
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~ 83 (273)
T PRK08278 5 SGKTLFITGASRGIGLAIALRA-ARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVAK 83 (273)
T ss_pred CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHH
Confidence 4679999999999999988877 4579999999986542 11 1223333222 333332333333333
Q ss_pred HhC-CCcccEEEECCCC
Q psy1959 227 VSG-GKYANVVFEAVGG 242 (296)
Q Consensus 227 ~~~-~~g~d~vld~~g~ 242 (296)
... -..+|++|++.|.
T Consensus 84 ~~~~~g~id~li~~ag~ 100 (273)
T PRK08278 84 AVERFGGIDICVNNASA 100 (273)
T ss_pred HHHHhCCCCEEEECCCC
Confidence 211 1269999999884
No 274
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.96 E-value=0.12 Score=46.42 Aligned_cols=80 Identities=15% Similarity=0.173 Sum_probs=56.9
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECC
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAV 240 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~ 240 (296)
.|++++|+|. |.+|.+++..+ +.+|++|++.++++++.+.+.+.+... +.. .+ +.+.. ..+|++++++
T Consensus 150 ~gk~v~IiG~-G~iG~avA~~L-~~~G~~V~v~~R~~~~~~~~~~~g~~~-~~~---~~----l~~~l--~~aDiVint~ 217 (287)
T TIGR02853 150 HGSNVMVLGF-GRTGMTIARTF-SALGARVFVGARSSADLARITEMGLIP-FPL---NK----LEEKV--AEIDIVINTI 217 (287)
T ss_pred CCCEEEEEcC-hHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHCCCee-ecH---HH----HHHHh--ccCCEEEECC
Confidence 5789999997 99999999999 568999999999988877777666432 111 11 22222 3689999998
Q ss_pred CCccH-HHHHHHh
Q psy1959 241 GGEDK-TDLIRQK 252 (296)
Q Consensus 241 g~~~~-~~~~~~l 252 (296)
....+ ...++.+
T Consensus 218 P~~ii~~~~l~~~ 230 (287)
T TIGR02853 218 PALVLTADVLSKL 230 (287)
T ss_pred ChHHhCHHHHhcC
Confidence 75432 3345555
No 275
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=95.96 E-value=0.042 Score=48.53 Aligned_cols=81 Identities=20% Similarity=0.232 Sum_probs=52.2
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG-GKY 232 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g 232 (296)
++++++|+|++|++|++.++.+ ...|++|+++++++++.+.+. +.+.... .+..+..+....+.+... -..
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 87 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKEL-ARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDFGP 87 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 5789999999999999988877 457999999998876654432 2233221 223332333333333221 136
Q ss_pred ccEEEECCCC
Q psy1959 233 ANVVFEAVGG 242 (296)
Q Consensus 233 ~d~vld~~g~ 242 (296)
+|+++.+.|.
T Consensus 88 id~li~~ag~ 97 (278)
T PRK08277 88 CDILINGAGG 97 (278)
T ss_pred CCEEEECCCC
Confidence 8999999883
No 276
>KOG1209|consensus
Probab=95.96 E-value=0.073 Score=45.29 Aligned_cols=80 Identities=16% Similarity=0.231 Sum_probs=55.5
Q ss_pred CCcEEEEEcC-CCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCcE-EEEcCCch---hHHHHHHHHhCCCccc
Q psy1959 161 EKQTVLVTAA-GGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAWA-ALTFTNEK---SLVNKVLEVSGGKYAN 234 (296)
Q Consensus 161 ~g~~vlI~Ga-~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~-~~~~~~~~---~~~~~i~~~~~~~g~d 234 (296)
..+.|||.|+ +|++|.+.+.-. ...|+.|+++.|+-+.++.+. ++|... -++..+++ .+..+++... ..+.|
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef-~~~G~~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~-~Gkld 83 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEF-ARNGYLVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANP-DGKLD 83 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHH-HhCCeEEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCC-CCceE
Confidence 4567889887 899999866655 347999999999999998887 677532 13333322 3334444433 34799
Q ss_pred EEEECCCC
Q psy1959 235 VVFEAVGG 242 (296)
Q Consensus 235 ~vld~~g~ 242 (296)
+.+++.|.
T Consensus 84 ~L~NNAG~ 91 (289)
T KOG1209|consen 84 LLYNNAGQ 91 (289)
T ss_pred EEEcCCCC
Confidence 99998874
No 277
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=95.96 E-value=0.043 Score=48.17 Aligned_cols=81 Identities=17% Similarity=0.142 Sum_probs=52.7
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG-GKY 232 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g 232 (296)
++++++|+|+++++|.+++..+ ...|++|+++++++++.+.+. ..+.... .+..+..+..+.+.+... -..
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l-~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 87 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAY-AKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVGV 87 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHH-HHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 5789999999999999877766 447999999998877654432 2343222 233332333333333321 136
Q ss_pred ccEEEECCCC
Q psy1959 233 ANVVFEAVGG 242 (296)
Q Consensus 233 ~d~vld~~g~ 242 (296)
+|+++.+.|.
T Consensus 88 id~li~~ag~ 97 (265)
T PRK07097 88 IDILVNNAGI 97 (265)
T ss_pred CCEEEECCCC
Confidence 8999999884
No 278
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=95.96 E-value=0.049 Score=51.34 Aligned_cols=75 Identities=23% Similarity=0.212 Sum_probs=49.3
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCc-EE--EEcCCchhHHHHHHHHhCCCcccEE
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAW-AA--LTFTNEKSLVNKVLEVSGGKYANVV 236 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~-~~--~~~~~~~~~~~~i~~~~~~~g~d~v 236 (296)
++++++|+|++|++|.+.++.+ ...|++|+++++++++..... +.... .. .+..+ .+.+.+.. .++|++
T Consensus 177 ~gK~VLITGASgGIG~aLA~~L-a~~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd----~~~v~~~l--~~IDiL 249 (406)
T PRK07424 177 KGKTVAVTGASGTLGQALLKEL-HQQGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQ----EAALAELL--EKVDIL 249 (406)
T ss_pred CCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCC----HHHHHHHh--CCCCEE
Confidence 4789999999999999988776 447999999998776654322 21111 11 23333 22333333 269999
Q ss_pred EECCCC
Q psy1959 237 FEAVGG 242 (296)
Q Consensus 237 ld~~g~ 242 (296)
+.+.|.
T Consensus 250 InnAGi 255 (406)
T PRK07424 250 IINHGI 255 (406)
T ss_pred EECCCc
Confidence 998874
No 279
>PRK06914 short chain dehydrogenase; Provisional
Probab=95.95 E-value=0.046 Score=48.30 Aligned_cols=80 Identities=20% Similarity=0.172 Sum_probs=52.0
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCC--cE-E--EEcCCchhHHHHHHHHhC-C
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGA--WA-A--LTFTNEKSLVNKVLEVSG-G 230 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~--~~-~--~~~~~~~~~~~~i~~~~~-~ 230 (296)
.+++++|+|++|++|.+.+..+ ...|++|++++++.++.+.+.+ .+. .. . .+..+..++.. +.+... -
T Consensus 2 ~~k~~lItGasg~iG~~la~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~~~~ 79 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLEL-AKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHN-FQLVLKEI 79 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHH-HhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHH-HHHHHHhc
Confidence 3578999999999999988877 4479999999988776654432 221 11 1 23333233333 443321 2
Q ss_pred CcccEEEECCCC
Q psy1959 231 KYANVVFEAVGG 242 (296)
Q Consensus 231 ~g~d~vld~~g~ 242 (296)
..+|+++.+.|.
T Consensus 80 ~~id~vv~~ag~ 91 (280)
T PRK06914 80 GRIDLLVNNAGY 91 (280)
T ss_pred CCeeEEEECCcc
Confidence 368999999874
No 280
>PRK06484 short chain dehydrogenase; Validated
Probab=95.93 E-value=0.035 Score=53.85 Aligned_cols=81 Identities=20% Similarity=0.211 Sum_probs=55.6
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCcE---EEEcCCchhHHHHHHHHhC-CCcccE
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAWA---ALTFTNEKSLVNKVLEVSG-GKYANV 235 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~---~~~~~~~~~~~~~i~~~~~-~~g~d~ 235 (296)
++++++|+|+++++|.++++.+ ...|++|+.++++.++.+.+. +++... ..+..+..+..+.+.+... ...+|+
T Consensus 4 ~~k~~lITGas~gIG~aia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~ 82 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRF-ARAGDQVVVADRNVERARERADSLGPDHHALAMDVSDEAQIREGFEQLHREFGRIDV 82 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEeccCCHHHHHHHHHHHHHHhCCCCE
Confidence 5789999999999999988877 457999999999888766554 444332 2333342344444433321 136999
Q ss_pred EEECCCC
Q psy1959 236 VFEAVGG 242 (296)
Q Consensus 236 vld~~g~ 242 (296)
++++.|.
T Consensus 83 li~nag~ 89 (520)
T PRK06484 83 LVNNAGV 89 (520)
T ss_pred EEECCCc
Confidence 9999874
No 281
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=95.91 E-value=0.043 Score=47.94 Aligned_cols=80 Identities=18% Similarity=0.166 Sum_probs=51.0
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH----HhcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI----RQKGAWAA---LTFTNEKSLVNKVLEVSG-GKY 232 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~----~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g 232 (296)
.+++++|+|+++++|.+.++.+ ...|++|++++++ ++.+.+ .+.+.... .+..+..+..+.+.+... ...
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l-~~~G~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~ 91 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVAL-AKAGADIIITTHG-TNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEFGK 91 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCC-cHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 5789999999999999988888 4579999999887 433333 22332221 233332333333333321 126
Q ss_pred ccEEEECCCC
Q psy1959 233 ANVVFEAVGG 242 (296)
Q Consensus 233 ~d~vld~~g~ 242 (296)
+|+++.+.|.
T Consensus 92 id~li~~ag~ 101 (258)
T PRK06935 92 IDILVNNAGT 101 (258)
T ss_pred CCEEEECCCC
Confidence 8999998874
No 282
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.88 E-value=0.05 Score=47.17 Aligned_cols=81 Identities=19% Similarity=0.172 Sum_probs=52.4
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWAA---LTFTNEKSLVNKVLEVSG-GKY 232 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~~---~~~~~~~~~~~~i~~~~~-~~g 232 (296)
++++++|+|++|++|..+++.. ...|.+|++++++.++.+.+.. .+.... .+..+..+..+.+.+... ..+
T Consensus 3 ~~~~vlItG~sg~iG~~la~~l-~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK12429 3 KGKVALVTGAASGIGLEIALAL-AKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFGG 81 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHH-HHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 4679999999999999988877 4479999999998776654422 232221 233332333333333211 136
Q ss_pred ccEEEECCCC
Q psy1959 233 ANVVFEAVGG 242 (296)
Q Consensus 233 ~d~vld~~g~ 242 (296)
+|+++.+.|.
T Consensus 82 ~d~vi~~a~~ 91 (258)
T PRK12429 82 VDILVNNAGI 91 (258)
T ss_pred CCEEEECCCC
Confidence 8999998874
No 283
>PRK12743 oxidoreductase; Provisional
Probab=95.86 E-value=0.056 Score=47.14 Aligned_cols=80 Identities=18% Similarity=0.189 Sum_probs=49.0
Q ss_pred CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC-CcchHHH----HHhcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959 162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN-SEDKTDL----IRQKGAWAA---LTFTNEKSLVNKVLEVSG-GKY 232 (296)
Q Consensus 162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~-~~~~~~~----~~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g 232 (296)
+++++|+|+++++|+.+++.+ ...|++|+.+.+ +.++.+. ++..+.... .+..+..+....+.+... -..
T Consensus 2 ~k~vlItGas~giG~~~a~~l-~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 80 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLL-AQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLGR 80 (256)
T ss_pred CCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 468999999999999988888 457999988754 3333332 233443322 233332333333333221 136
Q ss_pred ccEEEECCCC
Q psy1959 233 ANVVFEAVGG 242 (296)
Q Consensus 233 ~d~vld~~g~ 242 (296)
+|+++.+.|.
T Consensus 81 id~li~~ag~ 90 (256)
T PRK12743 81 IDVLVNNAGA 90 (256)
T ss_pred CCEEEECCCC
Confidence 8999999874
No 284
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.83 E-value=0.054 Score=47.43 Aligned_cols=81 Identities=21% Similarity=0.154 Sum_probs=50.2
Q ss_pred CCcEEEEEcC--CCcHHHHHHHHHHHhCCCEEEEEeCCc--chHHHHH-hcCCc---EEEEcCCchhHHHHHHHHhC-CC
Q psy1959 161 EKQTVLVTAA--GGGLGLAAVDMATKIYKAKVIGVCNSE--DKTDLIR-QKGAW---AALTFTNEKSLVNKVLEVSG-GK 231 (296)
Q Consensus 161 ~g~~vlI~Ga--~g~vG~aa~~la~~~~g~~Vi~~~~~~--~~~~~~~-~~g~~---~~~~~~~~~~~~~~i~~~~~-~~ 231 (296)
.+++++|+|+ ++++|.++++.+ ...|++|++++++. +..+.+. +++.. ...+..+..+..+.+.+... ..
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~l-a~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~g 84 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVA-QEQGAEVVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLASLADRVREHVD 84 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHH-HHCCCEEEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 5689999998 799999988776 34799999988653 3334333 33321 11333332333333333321 23
Q ss_pred cccEEEECCCC
Q psy1959 232 YANVVFEAVGG 242 (296)
Q Consensus 232 g~d~vld~~g~ 242 (296)
.+|+++++.|.
T Consensus 85 ~iD~li~nAG~ 95 (256)
T PRK07889 85 GLDGVVHSIGF 95 (256)
T ss_pred CCcEEEEcccc
Confidence 69999998874
No 285
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.83 E-value=0.078 Score=49.52 Aligned_cols=80 Identities=18% Similarity=0.199 Sum_probs=50.8
Q ss_pred EEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHh--cCCcEE---EEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959 165 VLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQ--KGAWAA---LTFTNEKSLVNKVLEVSGGKYANVVFE 238 (296)
Q Consensus 165 vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~--~g~~~~---~~~~~~~~~~~~i~~~~~~~g~d~vld 238 (296)
|+|+|+ |.+|..+++.+.+.... +|++.+++.++.+.+.+ .+.... ++..+ . +.+.++.. +.|+|++
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~---~-~~l~~~~~--~~dvVin 73 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVND---P-ESLAELLR--GCDVVIN 73 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTT---H-HHHHHHHT--TSSEEEE
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCC---H-HHHHHHHh--cCCEEEE
Confidence 689999 99999999998554445 89999999999887765 222221 23322 2 23555553 5699999
Q ss_pred CCCCccHHHHHHH
Q psy1959 239 AVGGEDKTDLIRQ 251 (296)
Q Consensus 239 ~~g~~~~~~~~~~ 251 (296)
|+|.......+++
T Consensus 74 ~~gp~~~~~v~~~ 86 (386)
T PF03435_consen 74 CAGPFFGEPVARA 86 (386)
T ss_dssp -SSGGGHHHHHHH
T ss_pred CCccchhHHHHHH
Confidence 9997533333333
No 286
>PRK05875 short chain dehydrogenase; Provisional
Probab=95.82 E-value=0.042 Score=48.45 Aligned_cols=81 Identities=22% Similarity=0.201 Sum_probs=51.8
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-h---cC--Cc-EEE--EcCCchhHHHHHHHHhC-C
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-Q---KG--AW-AAL--TFTNEKSLVNKVLEVSG-G 230 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~---~g--~~-~~~--~~~~~~~~~~~i~~~~~-~ 230 (296)
++++++|+|++|++|.++++.+ ...|++|+.+++++++.+... + .+ .. ..+ +..+..+....+.+... .
T Consensus 6 ~~k~vlItGasg~IG~~la~~l-~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (276)
T PRK05875 6 QDRTYLVTGGGSGIGKGVAAGL-VAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWH 84 (276)
T ss_pred CCCEEEEECCCcHHHHHHHHHH-HHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999888 457999999998876654332 2 11 11 112 33332333333333321 2
Q ss_pred CcccEEEECCCC
Q psy1959 231 KYANVVFEAVGG 242 (296)
Q Consensus 231 ~g~d~vld~~g~ 242 (296)
..+|+++.+.|.
T Consensus 85 ~~~d~li~~ag~ 96 (276)
T PRK05875 85 GRLHGVVHCAGG 96 (276)
T ss_pred CCCCEEEECCCc
Confidence 368999999873
No 287
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=95.82 E-value=0.057 Score=47.11 Aligned_cols=77 Identities=22% Similarity=0.179 Sum_probs=49.2
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcC--CcEE-EEcCCchhHHHHHHHHhCCCcccEEE
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKG--AWAA-LTFTNEKSLVNKVLEVSGGKYANVVF 237 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g--~~~~-~~~~~~~~~~~~i~~~~~~~g~d~vl 237 (296)
.+.+|+|+|++|.+|..+++.+ ...|.+|+++.++.++.......+ +..+ .+..+ . .+.+.+.. ..++|++|
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L-~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d-~--~~~l~~~~-~~~~d~vi 90 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQL-LAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTE-G--SDKLVEAI-GDDSDAVI 90 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHH-HhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCC-C--HHHHHHHh-hcCCCEEE
Confidence 3579999999999999988877 446899999988877654332212 2111 23322 1 12233332 13799999
Q ss_pred ECCCC
Q psy1959 238 EAVGG 242 (296)
Q Consensus 238 d~~g~ 242 (296)
.+.|.
T Consensus 91 ~~~g~ 95 (251)
T PLN00141 91 CATGF 95 (251)
T ss_pred ECCCC
Confidence 98774
No 288
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=95.82 E-value=0.053 Score=54.62 Aligned_cols=113 Identities=21% Similarity=0.253 Sum_probs=67.4
Q ss_pred ccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcC--CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEE
Q psy1959 116 FSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAK--LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGV 193 (296)
Q Consensus 116 ~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~--~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~ 193 (296)
..+|.-+++...|.+ +-.+++++= | .+... .-.+++++|+|++|++|.++++.+ ...|++|+++
T Consensus 379 ~~~~~~~~~~~~f~~-eyw~~e~~k-l-----------~~~~~~~~l~gkvvLVTGasggIG~aiA~~L-a~~Ga~Vvi~ 444 (676)
T TIGR02632 379 VSEYVSLPEQEAFDI-EYWPLEEAK-L-----------RRMPKEKTLARRVAFVTGGAGGIGRETARRL-AAEGAHVVLA 444 (676)
T ss_pred ccceecCchhhccch-hhhhhhHHh-h-----------ccCCCCcCCCCCEEEEeCCCcHHHHHHHHHH-HhCCCEEEEE
Confidence 455666666666665 444444442 1 01111 124789999999999999988877 4579999999
Q ss_pred eCCcchHHHHHh-----cCCcE--E--EEcCCchhHHHHHHHHhC-CCcccEEEECCCC
Q psy1959 194 CNSEDKTDLIRQ-----KGAWA--A--LTFTNEKSLVNKVLEVSG-GKYANVVFEAVGG 242 (296)
Q Consensus 194 ~~~~~~~~~~~~-----~g~~~--~--~~~~~~~~~~~~i~~~~~-~~g~d~vld~~g~ 242 (296)
+++.++.+.+.+ .+... . .+..+..++.+.+.+... -.++|+++++.|.
T Consensus 445 ~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~~g~iDilV~nAG~ 503 (676)
T TIGR02632 445 DLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALAYGGVDIVVNNAGI 503 (676)
T ss_pred eCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHhcCCCcEEEECCCC
Confidence 998776654432 12211 1 233332333333433321 2369999999984
No 289
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.81 E-value=0.059 Score=47.76 Aligned_cols=83 Identities=13% Similarity=0.149 Sum_probs=51.4
Q ss_pred CCCCcEEEEEcCC--CcHHHHHHHHHHHhCCCEEEEEeCCc---chHHHHH-hcCCcE--EEEcCCchhHHHHHHHHhC-
Q psy1959 159 LKEKQTVLVTAAG--GGLGLAAVDMATKIYKAKVIGVCNSE---DKTDLIR-QKGAWA--ALTFTNEKSLVNKVLEVSG- 229 (296)
Q Consensus 159 ~~~g~~vlI~Ga~--g~vG~aa~~la~~~~g~~Vi~~~~~~---~~~~~~~-~~g~~~--~~~~~~~~~~~~~i~~~~~- 229 (296)
+-.+++++|+|++ +++|++.++.+ ...|++|+.+.+++ ++.+.+. +++... ..+..+..+..+.+.+...
T Consensus 7 ~~~~k~~lItGas~~~GIG~aia~~l-a~~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 85 (272)
T PRK08159 7 LMAGKRGLILGVANNRSIAWGIAKAC-RAAGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKK 85 (272)
T ss_pred cccCCEEEEECCCCCCcHHHHHHHHH-HHCCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHh
Confidence 3367899999996 79999977777 45799998887653 3333332 334322 2333332344444444322
Q ss_pred CCcccEEEECCCC
Q psy1959 230 GKYANVVFEAVGG 242 (296)
Q Consensus 230 ~~g~d~vld~~g~ 242 (296)
-..+|+++++.|.
T Consensus 86 ~g~iD~lv~nAG~ 98 (272)
T PRK08159 86 WGKLDFVVHAIGF 98 (272)
T ss_pred cCCCcEEEECCcc
Confidence 2368999999874
No 290
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=95.81 E-value=0.084 Score=45.31 Aligned_cols=81 Identities=22% Similarity=0.226 Sum_probs=49.7
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch-HHH----HHhcCCcEE-E--EcCCchhHHHHHHHHhC-CC
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK-TDL----IRQKGAWAA-L--TFTNEKSLVNKVLEVSG-GK 231 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~-~~~----~~~~g~~~~-~--~~~~~~~~~~~i~~~~~-~~ 231 (296)
++.+++|+|++|++|...+..+ ...|++|+++.++..+ .+. ++..+.... + +..+..++.+.+.+... -.
T Consensus 4 ~~~~vlItG~sg~iG~~l~~~l-~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK05557 4 EGKVALVTGASRGIGRAIAERL-AAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAEFG 82 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4578999999999999999888 4579999777765442 222 222333222 2 33332333333333321 13
Q ss_pred cccEEEECCCC
Q psy1959 232 YANVVFEAVGG 242 (296)
Q Consensus 232 g~d~vld~~g~ 242 (296)
++|.++.+.|.
T Consensus 83 ~id~vi~~ag~ 93 (248)
T PRK05557 83 GVDILVNNAGI 93 (248)
T ss_pred CCCEEEECCCc
Confidence 68999999874
No 291
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=95.79 E-value=0.056 Score=46.71 Aligned_cols=81 Identities=25% Similarity=0.247 Sum_probs=52.3
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcE-E--EEcCCchhHHHHHHHHhC-CCc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWA-A--LTFTNEKSLVNKVLEVSG-GKY 232 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~-~--~~~~~~~~~~~~i~~~~~-~~g 232 (296)
++++++|+|++|++|..+++.+ ...|++|+.++++.++.+.+.+ .+... . .+..+..+..+.+.+... -..
T Consensus 2 ~~~~ilItGas~~iG~~la~~l-~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRF-AEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGP 80 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHH-HHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 4688999999999999988887 4579999999988776554432 23222 1 222332333333333321 136
Q ss_pred ccEEEECCCC
Q psy1959 233 ANVVFEAVGG 242 (296)
Q Consensus 233 ~d~vld~~g~ 242 (296)
+|++|.+.|.
T Consensus 81 ~d~vi~~ag~ 90 (250)
T TIGR03206 81 VDVLVNNAGW 90 (250)
T ss_pred CCEEEECCCC
Confidence 8999999973
No 292
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.79 E-value=0.063 Score=46.16 Aligned_cols=81 Identities=14% Similarity=0.178 Sum_probs=51.7
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG-GKY 232 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g 232 (296)
.+.+++|.|++|++|..++..+ ...|++|+++++++++.+.+. ..+.... .+..+..+..+.+.+... -.+
T Consensus 6 ~~~~vlVtG~sg~iG~~l~~~L-~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (239)
T PRK07666 6 QGKNALITGAGRGIGRAVAIAL-AKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGS 84 (239)
T ss_pred CCCEEEEEcCCchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 3578999999999999988776 447999999999877654432 2232221 122232333333333321 236
Q ss_pred ccEEEECCCC
Q psy1959 233 ANVVFEAVGG 242 (296)
Q Consensus 233 ~d~vld~~g~ 242 (296)
+|++|.+.|.
T Consensus 85 id~vi~~ag~ 94 (239)
T PRK07666 85 IDILINNAGI 94 (239)
T ss_pred ccEEEEcCcc
Confidence 8999999874
No 293
>PRK06128 oxidoreductase; Provisional
Probab=95.77 E-value=0.064 Score=48.15 Aligned_cols=81 Identities=19% Similarity=0.148 Sum_probs=49.8
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch--H----HHHHhcCCcEE---EEcCCchhHHHHHHHHhC-C
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK--T----DLIRQKGAWAA---LTFTNEKSLVNKVLEVSG-G 230 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~--~----~~~~~~g~~~~---~~~~~~~~~~~~i~~~~~-~ 230 (296)
.+++++|+|++|++|.+++..+ ...|++|+++.++.+. . +.++..+.... .+..+..+..+.+.+... -
T Consensus 54 ~~k~vlITGas~gIG~~~a~~l-~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 132 (300)
T PRK06128 54 QGRKALITGADSGIGRATAIAF-AREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKEL 132 (300)
T ss_pred CCCEEEEecCCCcHHHHHHHHH-HHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHHh
Confidence 5789999999999999988777 4479999887654332 1 22333343322 233332333333333221 2
Q ss_pred CcccEEEECCCC
Q psy1959 231 KYANVVFEAVGG 242 (296)
Q Consensus 231 ~g~d~vld~~g~ 242 (296)
.++|+++.+.|.
T Consensus 133 g~iD~lV~nAg~ 144 (300)
T PRK06128 133 GGLDILVNIAGK 144 (300)
T ss_pred CCCCEEEECCcc
Confidence 369999999884
No 294
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.77 E-value=0.055 Score=47.47 Aligned_cols=81 Identities=11% Similarity=0.054 Sum_probs=49.6
Q ss_pred CCcEEEEEcCC--CcHHHHHHHHHHHhCCCEEEEEeCCc---chHHHHH-hc-CCcE---EEEcCCchhHHHHHHHHhC-
Q psy1959 161 EKQTVLVTAAG--GGLGLAAVDMATKIYKAKVIGVCNSE---DKTDLIR-QK-GAWA---ALTFTNEKSLVNKVLEVSG- 229 (296)
Q Consensus 161 ~g~~vlI~Ga~--g~vG~aa~~la~~~~g~~Vi~~~~~~---~~~~~~~-~~-g~~~---~~~~~~~~~~~~~i~~~~~- 229 (296)
.+++++|+|++ +++|.++++.+ ...|++|+++++++ ++.+.+. +. +... ..+..+..+..+.+.+...
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~l-a~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 84 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSL-HNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEE 84 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHH-HHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHh
Confidence 57899999986 79999977776 34799999887643 3333333 22 2211 1233442344444444322
Q ss_pred CCcccEEEECCCC
Q psy1959 230 GKYANVVFEAVGG 242 (296)
Q Consensus 230 ~~g~d~vld~~g~ 242 (296)
-..+|+++++.|.
T Consensus 85 ~g~ld~lv~nag~ 97 (257)
T PRK08594 85 VGVIHGVAHCIAF 97 (257)
T ss_pred CCCccEEEECccc
Confidence 1369999998873
No 295
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=95.74 E-value=0.066 Score=46.03 Aligned_cols=81 Identities=15% Similarity=0.153 Sum_probs=52.2
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCcE-E--EEcCCchhHHHHHHHHhC-CCcccE
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAWA-A--LTFTNEKSLVNKVLEVSG-GKYANV 235 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~-~--~~~~~~~~~~~~i~~~~~-~~g~d~ 235 (296)
++.+++|+|++|++|+.+++.+ ...|+.|+...++.++.+.+. +.+... . .+..+..+..+.+.+... -.++|+
T Consensus 5 ~~~~vlItGa~g~iG~~la~~l-~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 83 (245)
T PRK12936 5 SGRKALVTGASGGIGEEIARLL-HAQGAIVGLHGTRVEKLEALAAELGERVKIFPANLSDRDEVKALGQKAEADLEGVDI 83 (245)
T ss_pred CCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 4679999999999999988777 447899988888777766553 333222 1 233332333333333211 236999
Q ss_pred EEECCCC
Q psy1959 236 VFEAVGG 242 (296)
Q Consensus 236 vld~~g~ 242 (296)
++.+.|.
T Consensus 84 vi~~ag~ 90 (245)
T PRK12936 84 LVNNAGI 90 (245)
T ss_pred EEECCCC
Confidence 9999884
No 296
>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function.
Probab=95.71 E-value=0.83 Score=41.38 Aligned_cols=145 Identities=14% Similarity=0.148 Sum_probs=86.5
Q ss_pred CCCCCCCCCEEEEecCC-------------------------CCCcccceEeeeCCceEECCCCCCHHHHhhhccH-HHH
Q psy1959 95 EEDVLQVGDKVLALNKE-------------------------LLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADS-YST 148 (296)
Q Consensus 95 ~v~~~~~Gd~V~~~~~~-------------------------~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~-~~t 148 (296)
.++++.+|.||.++-+. ..-.|.+|.++..+..+. -+.+..-+|..+ +.|
T Consensus 45 ~~~~i~vGerlyGy~P~ashl~l~p~~v~~~~f~d~s~hR~~l~~~YN~Y~r~~~d~~y~----~~~e~~~~LlrPLf~T 120 (314)
T PF11017_consen 45 RHPGIAVGERLYGYFPMASHLVLEPGKVSPGGFRDVSPHRAGLPPIYNQYLRVSADPAYD----PEREDWQMLLRPLFIT 120 (314)
T ss_pred CCCCccCccEEEeeccccceeEEeccccCCCccccChhhhCcCchhhhceeecCCCcccC----cchhHHHHHHHHHHHH
Confidence 67889999999987650 112234444443332221 122333233333 555
Q ss_pred HHHHHHHHc--CCCCCcEEEEEcCCCcHHHHHHHHHHH-hCCCEEEEEeCCcchHHHHHhcCC-cEEEEcCCchhHHHHH
Q psy1959 149 AQIVFSRHA--KLKEKQTVLVTAAGGGLGLAAVDMATK-IYKAKVIGVCNSEDKTDLIRQKGA-WAALTFTNEKSLVNKV 224 (296)
Q Consensus 149 a~~~l~~~~--~~~~g~~vlI~Ga~g~vG~aa~~la~~-~~g~~Vi~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~i 224 (296)
.|..-.-+. +.-..+.|+|..+|+-+++..+.++++ ..+.+++.+. |+....+.+.+|. +.++.|++ +
T Consensus 121 sfll~d~l~~~~~~ga~~vvl~SASSKTA~glA~~L~~~~~~~~~vglT-S~~N~~Fve~lg~Yd~V~~Yd~-------i 192 (314)
T PF11017_consen 121 SFLLDDFLFDNDFFGAAQVVLSSASSKTAIGLAYCLKKQRGPPKVVGLT-SARNVAFVESLGCYDEVLTYDD-------I 192 (314)
T ss_pred HHHHHHHhcccccCCccEEEEeccchHHHHHHHHHhhccCCCceEEEEe-cCcchhhhhccCCceEEeehhh-------h
Confidence 554422111 233567888999999999998888842 3455888777 6777788888885 56777755 2
Q ss_pred HHHhCCCcccEEEECCCCc-cHHHHHHHh
Q psy1959 225 LEVSGGKYANVVFEAVGGE-DKTDLIRQK 252 (296)
Q Consensus 225 ~~~~~~~g~d~vld~~g~~-~~~~~~~~l 252 (296)
..+.. ..--+++|..|+. .....-..+
T Consensus 193 ~~l~~-~~~~v~VDfaG~~~~~~~Lh~~l 220 (314)
T PF11017_consen 193 DSLDA-PQPVVIVDFAGNGEVLAALHEHL 220 (314)
T ss_pred hhccC-CCCEEEEECCCCHHHHHHHHHHH
Confidence 22221 2456899999994 555555555
No 297
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.71 E-value=0.072 Score=50.76 Aligned_cols=81 Identities=20% Similarity=0.190 Sum_probs=52.2
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc--hHHHH-HhcCCcE-EEEcCCchhHHHHHHHHhC-CCcccE
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED--KTDLI-RQKGAWA-ALTFTNEKSLVNKVLEVSG-GKYANV 235 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~--~~~~~-~~~g~~~-~~~~~~~~~~~~~i~~~~~-~~g~d~ 235 (296)
++++++|+|++|++|.++++.+ ...|++|+++++++. +...+ .+.+... ..+..+.......+..... ..++|+
T Consensus 209 ~g~~vlItGasggIG~~la~~l-~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~ 287 (450)
T PRK08261 209 AGKVALVTGAARGIGAAIAEVL-ARDGAHVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLDI 287 (450)
T ss_pred CCCEEEEecCCCHHHHHHHHHH-HHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCCE
Confidence 5789999999999999998888 457999999987432 23332 3445432 2455442333333333221 226999
Q ss_pred EEECCCC
Q psy1959 236 VFEAVGG 242 (296)
Q Consensus 236 vld~~g~ 242 (296)
+|++.|.
T Consensus 288 vi~~AG~ 294 (450)
T PRK08261 288 VVHNAGI 294 (450)
T ss_pred EEECCCc
Confidence 9999983
No 298
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=95.69 E-value=0.23 Score=38.94 Aligned_cols=94 Identities=15% Similarity=0.188 Sum_probs=59.8
Q ss_pred EEEEcCCCcHHHHHHHHHHHhC-CCEEEEEeCCcc--h-HHHHHhcCCcEEEEcCCc--hhH----------------HH
Q psy1959 165 VLVTAAGGGLGLAAVDMATKIY-KAKVIGVCNSED--K-TDLIRQKGAWAALTFTNE--KSL----------------VN 222 (296)
Q Consensus 165 vlI~Ga~g~vG~aa~~la~~~~-g~~Vi~~~~~~~--~-~~~~~~~g~~~~~~~~~~--~~~----------------~~ 222 (296)
|.|+|++|.+|..++++.++.. .++|+.+..... + .+.++++.+..+...++. ..+ .+
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~~ 80 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAGSNIEKLAEQAREFKPKYVVIADEEAYEELKKALPSKGPGIEVLSGPE 80 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEESSTHHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTSSSEEEESHH
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHHhhhcCCCCEEEeChH
Confidence 5789999999999999996543 268887775332 2 244566777776665431 111 12
Q ss_pred HHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceE
Q psy1959 223 KVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALT 259 (296)
Q Consensus 223 ~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~ 259 (296)
.+.++.....+|+++.++-+ ..+.-.+..+ ..+-.+
T Consensus 81 ~l~~~~~~~~~D~vv~Ai~G~aGL~pt~~Ai-~~gk~i 117 (129)
T PF02670_consen 81 GLEELAEEPEVDIVVNAIVGFAGLKPTLAAI-KAGKDI 117 (129)
T ss_dssp HHHHHHTHTT-SEEEE--SSGGGHHHHHHHH-HTTSEE
T ss_pred HHHHHhcCCCCCEEEEeCcccchHHHHHHHH-HCCCeE
Confidence 23344444579999998877 7899999998 666554
No 299
>PRK05650 short chain dehydrogenase; Provisional
Probab=95.67 E-value=0.066 Score=47.10 Aligned_cols=78 Identities=17% Similarity=0.076 Sum_probs=49.4
Q ss_pred EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH----HhcCCcEE---EEcCCchhHHHHHHHHh-CCCcccE
Q psy1959 164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI----RQKGAWAA---LTFTNEKSLVNKVLEVS-GGKYANV 235 (296)
Q Consensus 164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~----~~~g~~~~---~~~~~~~~~~~~i~~~~-~~~g~d~ 235 (296)
+++|+|++|++|+..+..+ ...|++|++++++.++.+.+ +..+.... .+..+..+..+.+.+.. ...++|+
T Consensus 2 ~vlVtGasggIG~~la~~l-~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~ 80 (270)
T PRK05650 2 RVMITGAASGLGRAIALRW-AREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGIDV 80 (270)
T ss_pred EEEEecCCChHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 6899999999999988777 34799999999887765533 22333322 22223223333332221 1236999
Q ss_pred EEECCCC
Q psy1959 236 VFEAVGG 242 (296)
Q Consensus 236 vld~~g~ 242 (296)
++.+.|.
T Consensus 81 lI~~ag~ 87 (270)
T PRK05650 81 IVNNAGV 87 (270)
T ss_pred EEECCCC
Confidence 9999884
No 300
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=95.67 E-value=0.053 Score=46.96 Aligned_cols=80 Identities=20% Similarity=0.187 Sum_probs=51.5
Q ss_pred CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcEE---EEcCCchhHHHHHHHHh-CCCcc
Q psy1959 162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWAA---LTFTNEKSLVNKVLEVS-GGKYA 233 (296)
Q Consensus 162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~~---~~~~~~~~~~~~i~~~~-~~~g~ 233 (296)
+++++|+|++|++|...+..+ ...|.+|++++++.++.+.+.+ .+.... .+..+..++...+.+.. .-.++
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l-~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 79 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALAL-AAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGL 79 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 357999999999999988777 4479999999998776655543 232221 23333233333333321 12368
Q ss_pred cEEEECCCC
Q psy1959 234 NVVFEAVGG 242 (296)
Q Consensus 234 d~vld~~g~ 242 (296)
|+++.+.|.
T Consensus 80 d~vi~~a~~ 88 (255)
T TIGR01963 80 DILVNNAGI 88 (255)
T ss_pred CEEEECCCC
Confidence 999998874
No 301
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=95.67 E-value=0.047 Score=47.13 Aligned_cols=81 Identities=16% Similarity=0.145 Sum_probs=48.8
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC-Ccc-hHHHH---HhcCCcEE---EEcCCchhHHHHHHHHhC-CC
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN-SED-KTDLI---RQKGAWAA---LTFTNEKSLVNKVLEVSG-GK 231 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~-~~~-~~~~~---~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~ 231 (296)
++++++|+|++|++|..+++.+ ...|++|++..+ ++. +.+.+ ++.+.... .+..+..+..+.+.+... ..
T Consensus 2 ~~k~~lVtG~s~giG~~~a~~l-~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (246)
T PRK12938 2 SQRIAYVTGGMGGIGTSICQRL-HKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEVG 80 (246)
T ss_pred CCCEEEEECCCChHHHHHHHHH-HHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 3678999999999999988888 457999887543 222 22222 33344332 233332333333333211 13
Q ss_pred cccEEEECCCC
Q psy1959 232 YANVVFEAVGG 242 (296)
Q Consensus 232 g~d~vld~~g~ 242 (296)
++|+++++.|.
T Consensus 81 ~id~li~~ag~ 91 (246)
T PRK12938 81 EIDVLVNNAGI 91 (246)
T ss_pred CCCEEEECCCC
Confidence 79999999985
No 302
>PRK08219 short chain dehydrogenase; Provisional
Probab=95.66 E-value=0.074 Score=45.16 Aligned_cols=74 Identities=18% Similarity=0.218 Sum_probs=48.1
Q ss_pred cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhc--CCcEE-EEcCCchhHHHHHHHHhCC-CcccEEEE
Q psy1959 163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK--GAWAA-LTFTNEKSLVNKVLEVSGG-KYANVVFE 238 (296)
Q Consensus 163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~--g~~~~-~~~~~~~~~~~~i~~~~~~-~g~d~vld 238 (296)
.+++|+|++|.+|..++..+.+ . .+|++++++.++.+.+.+. +...+ .+..+.. .+.+.... .++|.++.
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~-~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~----~~~~~~~~~~~id~vi~ 77 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAP-T-HTLLLGGRPAERLDELAAELPGATPFPVDLTDPE----AIAAAVEQLGRLDVLVH 77 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHh-h-CCEEEEeCCHHHHHHHHHHhccceEEecCCCCHH----HHHHHHHhcCCCCEEEE
Confidence 5799999999999998887734 4 8999999987776655432 22111 2222312 23322221 26999999
Q ss_pred CCCC
Q psy1959 239 AVGG 242 (296)
Q Consensus 239 ~~g~ 242 (296)
+.|.
T Consensus 78 ~ag~ 81 (227)
T PRK08219 78 NAGV 81 (227)
T ss_pred CCCc
Confidence 9885
No 303
>PRK07102 short chain dehydrogenase; Provisional
Probab=95.60 E-value=0.076 Score=45.86 Aligned_cols=77 Identities=13% Similarity=0.175 Sum_probs=49.6
Q ss_pred cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----c-CCcE-E--EEcCCchhHHHHHHHHhCCCccc
Q psy1959 163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----K-GAWA-A--LTFTNEKSLVNKVLEVSGGKYAN 234 (296)
Q Consensus 163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~-g~~~-~--~~~~~~~~~~~~i~~~~~~~g~d 234 (296)
++++|+|++|++|...++.+ ...|++|+++++++++.+.+.+ . +... . .+..+..+..+.+.+.. ..+|
T Consensus 2 ~~vlItGas~giG~~~a~~l-~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~d 78 (243)
T PRK07102 2 KKILIIGATSDIARACARRY-AAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLP--ALPD 78 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHH-HhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHh--hcCC
Confidence 57999999999999988888 4579999999998876654322 1 1111 1 22233233333333332 2469
Q ss_pred EEEECCCC
Q psy1959 235 VVFEAVGG 242 (296)
Q Consensus 235 ~vld~~g~ 242 (296)
+++.+.|.
T Consensus 79 ~vv~~ag~ 86 (243)
T PRK07102 79 IVLIAVGT 86 (243)
T ss_pred EEEECCcC
Confidence 99998774
No 304
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.60 E-value=0.093 Score=47.33 Aligned_cols=81 Identities=22% Similarity=0.144 Sum_probs=49.3
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc-chHH----HHHhcCCcEEE---EcCCchhHHHHHHHHhCCCc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE-DKTD----LIRQKGAWAAL---TFTNEKSLVNKVLEVSGGKY 232 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~-~~~~----~~~~~g~~~~~---~~~~~~~~~~~i~~~~~~~g 232 (296)
++++++|+|+++++|.+.++.+ ...|++|++.++.. ++.+ .++..+..... +..+.....+.+.....-..
T Consensus 11 ~~k~~lVTGas~gIG~~ia~~L-~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~~g~ 89 (306)
T PRK07792 11 SGKVAVVTGAAAGLGRAEALGL-ARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVGLGG 89 (306)
T ss_pred CCCEEEEECCCChHHHHHHHHH-HHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHhCC
Confidence 5789999999999999977777 44799999988643 2322 22333433222 22232233332322222236
Q ss_pred ccEEEECCCC
Q psy1959 233 ANVVFEAVGG 242 (296)
Q Consensus 233 ~d~vld~~g~ 242 (296)
+|+++++.|.
T Consensus 90 iD~li~nAG~ 99 (306)
T PRK07792 90 LDIVVNNAGI 99 (306)
T ss_pred CCEEEECCCC
Confidence 9999999885
No 305
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=95.60 E-value=0.073 Score=46.35 Aligned_cols=81 Identities=20% Similarity=0.197 Sum_probs=52.7
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG-GKY 232 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g 232 (296)
.+++++|+|+++++|...+..+ ...|++|+.+++++++.+.+. +.+.... .+..+..+..+.+..... -..
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l-~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 88 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITF-ATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKLGK 88 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHH-HHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4789999999999999988877 457999999998877654432 2232221 233332333333333221 236
Q ss_pred ccEEEECCCC
Q psy1959 233 ANVVFEAVGG 242 (296)
Q Consensus 233 ~d~vld~~g~ 242 (296)
+|+++.+.|.
T Consensus 89 ~d~li~~ag~ 98 (255)
T PRK06113 89 VDILVNNAGG 98 (255)
T ss_pred CCEEEECCCC
Confidence 8999999884
No 306
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=95.60 E-value=0.061 Score=47.17 Aligned_cols=81 Identities=6% Similarity=-0.013 Sum_probs=48.2
Q ss_pred CCcEEEEEcCC--CcHHHHHHHHHHHhCCCEEEEEeCCc------chHHHHHhcCCc-EE--EEcCCchhHHHHHHHHhC
Q psy1959 161 EKQTVLVTAAG--GGLGLAAVDMATKIYKAKVIGVCNSE------DKTDLIRQKGAW-AA--LTFTNEKSLVNKVLEVSG 229 (296)
Q Consensus 161 ~g~~vlI~Ga~--g~vG~aa~~la~~~~g~~Vi~~~~~~------~~~~~~~~~g~~-~~--~~~~~~~~~~~~i~~~~~ 229 (296)
.+++++|+|++ +++|.++++.+ ...|++|++..++. +..+.+++.+.. .. .+..+.++..+.+.+...
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~l-a~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 83 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQL-HAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIKQ 83 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHH-HHCCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHHH
Confidence 57899999985 79999977777 44799998875432 223333332221 11 333342333333333321
Q ss_pred -CCcccEEEECCCC
Q psy1959 230 -GKYANVVFEAVGG 242 (296)
Q Consensus 230 -~~g~d~vld~~g~ 242 (296)
...+|+++++.|.
T Consensus 84 ~~g~iD~lv~nag~ 97 (258)
T PRK07370 84 KWGKLDILVHCLAF 97 (258)
T ss_pred HcCCCCEEEEcccc
Confidence 1369999999884
No 307
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=95.58 E-value=0.14 Score=48.58 Aligned_cols=141 Identities=20% Similarity=0.231 Sum_probs=88.3
Q ss_pred cCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCEEEE---------------ecCCCCCcccceEeeeCCceEE---C-
Q psy1959 70 VPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLA---------------LNKELLHGFSDQCVVHTNDVFK---I- 130 (296)
Q Consensus 70 ~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V~~---------------~~~~~~g~~~~~~~v~~~~~~~---i- 130 (296)
.-|.|+++.+.+| +.+.+..-+|+.-++ .....++.|++++.++. .+.. |
T Consensus 89 ~~~~~a~~hl~~V----------a~GldS~V~GE~qI~gQvk~a~~~a~~~~~~g~~l~~lf~~a~~~~k-~vr~~t~i~ 157 (417)
T TIGR01035 89 LTGESAVEHLFRV----------ASGLDSMVVGETQILGQVKNAYKVAQEEKTVGKVLERLFQKAFSVGK-RVRTETDIS 157 (417)
T ss_pred cCchHHHHHHHHH----------HhhhhhhhcCChHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhh-hhhhhcCCC
Confidence 4688899999999 665555555553331 00122467888888876 3222 4
Q ss_pred CCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCC-CEEEEEeCCcchHH-HHHhcCC
Q psy1959 131 PEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYK-AKVIGVCNSEDKTD-LIRQKGA 208 (296)
Q Consensus 131 P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g-~~Vi~~~~~~~~~~-~~~~~g~ 208 (296)
+..+|...+|. ....+..+..++++++|+|+ |.+|..+++.+ ...| .+|++++++.++.. .+++++.
T Consensus 158 ~~~vSv~~~Av---------~la~~~~~~l~~~~VlViGa-G~iG~~~a~~L-~~~G~~~V~v~~rs~~ra~~la~~~g~ 226 (417)
T TIGR01035 158 AGAVSISSAAV---------ELAERIFGSLKGKKALLIGA-GEMGELVAKHL-LRKGVGKILIANRTYERAEDLAKELGG 226 (417)
T ss_pred CCCcCHHHHHH---------HHHHHHhCCccCCEEEEECC-hHHHHHHHHHH-HHCCCCEEEEEeCCHHHHHHHHHHcCC
Confidence 44444443331 11113334457899999997 99999999999 4578 58999999888755 5556665
Q ss_pred cEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959 209 WAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG 242 (296)
Q Consensus 209 ~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~ 242 (296)
. .+.. .+.. +.. .++|++|+|++.
T Consensus 227 ~-~i~~---~~l~----~~l--~~aDvVi~aT~s 250 (417)
T TIGR01035 227 E-AVKF---EDLE----EYL--AEADIVISSTGA 250 (417)
T ss_pred e-EeeH---HHHH----HHH--hhCCEEEECCCC
Confidence 3 2222 1222 222 268999999987
No 308
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=95.52 E-value=0.051 Score=47.60 Aligned_cols=78 Identities=15% Similarity=0.143 Sum_probs=50.2
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcE-EEEcCCchhHHHHHHHHhC-CCcccEEEE
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWA-ALTFTNEKSLVNKVLEVSG-GKYANVVFE 238 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~i~~~~~-~~g~d~vld 238 (296)
.+++++|+|++|++|.++++.+ ...|++|+.+++++++.+. ..... ..+..+..+..+.+.+... -..+|+++.
T Consensus 8 ~~k~vlItG~s~gIG~~la~~l-~~~G~~v~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~ 83 (266)
T PRK06171 8 QGKIIIVTGGSSGIGLAIVKEL-LANGANVVNADIHGGDGQH---ENYQFVPTDVSSAEEVNHTVAEIIEKFGRIDGLVN 83 (266)
T ss_pred CCCEEEEeCCCChHHHHHHHHH-HHCCCEEEEEeCCcccccc---CceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 4689999999999999988877 4579999999987665431 11111 1233332333333333321 136899999
Q ss_pred CCCC
Q psy1959 239 AVGG 242 (296)
Q Consensus 239 ~~g~ 242 (296)
+.|.
T Consensus 84 ~Ag~ 87 (266)
T PRK06171 84 NAGI 87 (266)
T ss_pred CCcc
Confidence 9884
No 309
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=95.50 E-value=0.12 Score=44.35 Aligned_cols=72 Identities=18% Similarity=0.159 Sum_probs=52.9
Q ss_pred EEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc--hHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959 165 VLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED--KTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG 242 (296)
Q Consensus 165 vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~ 242 (296)
|+|+|++|.+|..+++.+. ..+.+|.++.|+.. ..+.+++.|+..+ ..+ .+-.+.+.+.. +|+|.+|.+.+.
T Consensus 1 I~V~GatG~~G~~v~~~L~-~~~~~V~~l~R~~~~~~~~~l~~~g~~vv-~~d--~~~~~~l~~al--~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALL-SAGFSVRALVRDPSSDRAQQLQALGAEVV-EAD--YDDPESLVAAL--KGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHH-HTTGCEEEEESSSHHHHHHHHHHTTTEEE-ES---TT-HHHHHHHH--TTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHH-hCCCCcEEEEeccchhhhhhhhcccceEe-ecc--cCCHHHHHHHH--cCCceEEeecCc
Confidence 7899999999999999994 47889999998764 3566777888544 221 22245555555 389999999983
No 310
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.48 E-value=0.085 Score=45.60 Aligned_cols=81 Identities=14% Similarity=0.086 Sum_probs=49.9
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEE-eCCcchHHH----HHhcCCcEE---EEcCCchhHHHHHHHHhC-CC
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGV-CNSEDKTDL----IRQKGAWAA---LTFTNEKSLVNKVLEVSG-GK 231 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~-~~~~~~~~~----~~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~ 231 (296)
++++++|+|++|++|+.++..+ ...|++|++. .++.++.+. +++.+.... .+..+..+....+.+... ..
T Consensus 3 ~~~~vlItGa~g~iG~~~a~~l-~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (250)
T PRK08063 3 SGKVALVTGSSRGIGKAIALRL-AEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEFG 81 (250)
T ss_pred CCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4679999999999999988888 4579998764 555554433 233343222 223332333333433321 13
Q ss_pred cccEEEECCCC
Q psy1959 232 YANVVFEAVGG 242 (296)
Q Consensus 232 g~d~vld~~g~ 242 (296)
.+|+++.+.|.
T Consensus 82 ~id~vi~~ag~ 92 (250)
T PRK08063 82 RLDVFVNNAAS 92 (250)
T ss_pred CCCEEEECCCC
Confidence 68999999874
No 311
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=95.46 E-value=0.093 Score=45.42 Aligned_cols=83 Identities=22% Similarity=0.208 Sum_probs=52.0
Q ss_pred CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH----HhcCCcE--E--EEcC--CchhHHHHHHHHh
Q psy1959 159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI----RQKGAWA--A--LTFT--NEKSLVNKVLEVS 228 (296)
Q Consensus 159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~----~~~g~~~--~--~~~~--~~~~~~~~i~~~~ 228 (296)
..++.+++|+|++|++|...++.+ ...|++|++++++.++.+.+ ++.+... . .+.. +..+..+.+..+.
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l-~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTY-ARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIE 87 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHH-HHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHH
Confidence 447899999999999999988877 44799999999987665433 2333221 1 1221 1123333222221
Q ss_pred C-CCcccEEEECCCC
Q psy1959 229 G-GKYANVVFEAVGG 242 (296)
Q Consensus 229 ~-~~g~d~vld~~g~ 242 (296)
. ...+|.++.+.|.
T Consensus 88 ~~~~~id~vi~~Ag~ 102 (247)
T PRK08945 88 EQFGRLDGVLHNAGL 102 (247)
T ss_pred HHhCCCCEEEECCcc
Confidence 1 1268999998864
No 312
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=95.46 E-value=0.094 Score=45.90 Aligned_cols=80 Identities=15% Similarity=0.142 Sum_probs=49.1
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC-CcchHHHH----Hh-cCCcE-E--EEcCCchhHHHHHHHHhC-C
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN-SEDKTDLI----RQ-KGAWA-A--LTFTNEKSLVNKVLEVSG-G 230 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~-~~~~~~~~----~~-~g~~~-~--~~~~~~~~~~~~i~~~~~-~ 230 (296)
++++++|+|+++++|.+++..+ ...|++|+.+.+ ++++.+.+ +. .+... . .+..+..+..+.+.+... -
T Consensus 7 ~~k~vlItGas~gIG~~ia~~l-~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (260)
T PRK08416 7 KGKTLVISGGTRGIGKAIVYEF-AQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDEDF 85 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 5789999999999999988777 447999988754 34443322 21 23222 1 233332344433433321 1
Q ss_pred CcccEEEECCC
Q psy1959 231 KYANVVFEAVG 241 (296)
Q Consensus 231 ~g~d~vld~~g 241 (296)
..+|+++++.|
T Consensus 86 g~id~lv~nAg 96 (260)
T PRK08416 86 DRVDFFISNAI 96 (260)
T ss_pred CCccEEEECcc
Confidence 36899999886
No 313
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=95.43 E-value=0.084 Score=47.85 Aligned_cols=80 Identities=24% Similarity=0.221 Sum_probs=51.3
Q ss_pred CcEEEEEcCCCcHHHHHHHHHHHhCC-CEEEEEeCCcchHHHHH-hcC---CcE-E--EEcCCchhHHHHHHHHhC-CCc
Q psy1959 162 KQTVLVTAAGGGLGLAAVDMATKIYK-AKVIGVCNSEDKTDLIR-QKG---AWA-A--LTFTNEKSLVNKVLEVSG-GKY 232 (296)
Q Consensus 162 g~~vlI~Ga~g~vG~aa~~la~~~~g-~~Vi~~~~~~~~~~~~~-~~g---~~~-~--~~~~~~~~~~~~i~~~~~-~~g 232 (296)
+++++|+|+++++|.++++.+ ...| ++|+++++++++.+.+. ++. ... . .+..+..+....+.+... ...
T Consensus 3 ~k~vlITGas~GIG~aia~~L-~~~G~~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~ 81 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKAL-AATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRESGRP 81 (314)
T ss_pred CCEEEEECCCChHHHHHHHHH-HHcCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 568999999999999977766 3468 89999998877665443 332 111 1 233332333333333321 236
Q ss_pred ccEEEECCCC
Q psy1959 233 ANVVFEAVGG 242 (296)
Q Consensus 233 ~d~vld~~g~ 242 (296)
+|+++.+.|.
T Consensus 82 iD~lI~nAG~ 91 (314)
T TIGR01289 82 LDALVCNAAV 91 (314)
T ss_pred CCEEEECCCc
Confidence 9999999874
No 314
>PRK12746 short chain dehydrogenase; Provisional
Probab=95.42 E-value=0.063 Score=46.57 Aligned_cols=81 Identities=19% Similarity=0.156 Sum_probs=50.1
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEE-eCCcchHHHHH-h---cCCcE-E--EEcCCchhHHHHHHHHh----
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGV-CNSEDKTDLIR-Q---KGAWA-A--LTFTNEKSLVNKVLEVS---- 228 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~-~~~~~~~~~~~-~---~g~~~-~--~~~~~~~~~~~~i~~~~---- 228 (296)
.+.+++|+|++|++|...++.+ ...|++|++. .+++++.+.+. + .+... . .+..+..++.+.+.+..
T Consensus 5 ~~~~ilItGasg~iG~~la~~l-~~~G~~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~ 83 (254)
T PRK12746 5 DGKVALVTGASRGIGRAIAMRL-ANDGALVAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKNELQ 83 (254)
T ss_pred CCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHHHHhc
Confidence 3578999999999999988877 4479998775 56555543222 2 22222 1 23333344444444332
Q ss_pred ---CCCcccEEEECCCC
Q psy1959 229 ---GGKYANVVFEAVGG 242 (296)
Q Consensus 229 ---~~~g~d~vld~~g~ 242 (296)
+..++|++|.+.|.
T Consensus 84 ~~~~~~~id~vi~~ag~ 100 (254)
T PRK12746 84 IRVGTSEIDILVNNAGI 100 (254)
T ss_pred cccCCCCccEEEECCCC
Confidence 12369999999874
No 315
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=95.42 E-value=0.091 Score=48.22 Aligned_cols=77 Identities=16% Similarity=0.043 Sum_probs=48.9
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH-HhcC--CcE-E--EEcCCchhHHHHHHHHhCCCccc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI-RQKG--AWA-A--LTFTNEKSLVNKVLEVSGGKYAN 234 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~-~~~g--~~~-~--~~~~~~~~~~~~i~~~~~~~g~d 234 (296)
++.+|+|+|++|.+|..+++.+ ...|.+|+++++++...... ..++ ... . .+..+.. .+.++....++|
T Consensus 3 ~~k~ilItGatG~IG~~l~~~L-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~----~~~~~~~~~~~d 77 (349)
T TIGR02622 3 QGKKVLVTGHTGFKGSWLSLWL-LELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAA----KLRKAIAEFKPE 77 (349)
T ss_pred CCCEEEEECCCChhHHHHHHHH-HHCCCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHH----HHHHHHhhcCCC
Confidence 4689999999999999988888 45799999998866543322 1121 111 1 2223312 233333233689
Q ss_pred EEEECCCC
Q psy1959 235 VVFEAVGG 242 (296)
Q Consensus 235 ~vld~~g~ 242 (296)
+++.+.+.
T Consensus 78 ~vih~A~~ 85 (349)
T TIGR02622 78 IVFHLAAQ 85 (349)
T ss_pred EEEECCcc
Confidence 99999873
No 316
>PRK09135 pteridine reductase; Provisional
Probab=95.41 E-value=0.089 Score=45.29 Aligned_cols=81 Identities=12% Similarity=0.087 Sum_probs=48.8
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc-chHHHH----HhcCC-cE-E--EEcCCchhHHHHHHHHh-CC
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE-DKTDLI----RQKGA-WA-A--LTFTNEKSLVNKVLEVS-GG 230 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~-~~~~~~----~~~g~-~~-~--~~~~~~~~~~~~i~~~~-~~ 230 (296)
.+++++|+|++|++|..+++.+ ...|++|+.++++. ++.+.+ .+... .. . .+..+..+....+.+.. .-
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l-~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 83 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTL-HAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAF 83 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4578999999999999887777 44799999998753 333322 22211 11 1 23333233333333221 11
Q ss_pred CcccEEEECCCC
Q psy1959 231 KYANVVFEAVGG 242 (296)
Q Consensus 231 ~g~d~vld~~g~ 242 (296)
..+|++|.+.|.
T Consensus 84 ~~~d~vi~~ag~ 95 (249)
T PRK09135 84 GRLDALVNNASS 95 (249)
T ss_pred CCCCEEEECCCC
Confidence 368999999983
No 317
>PRK06701 short chain dehydrogenase; Provisional
Probab=95.32 E-value=0.11 Score=46.57 Aligned_cols=81 Identities=15% Similarity=0.131 Sum_probs=49.7
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch-HH----HHHhcCCcEE---EEcCCchhHHHHHHHHhC-CC
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK-TD----LIRQKGAWAA---LTFTNEKSLVNKVLEVSG-GK 231 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~-~~----~~~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~ 231 (296)
++.+++|+|++|++|..+++.+ ...|++|+++.+++++ .+ .++..+.... .+..+.....+.+.+... ..
T Consensus 45 ~~k~iLItGasggIG~~la~~l-~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~ 123 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLF-AKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELG 123 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 5789999999999999987777 3479999998876532 22 2222233222 233332333333333221 13
Q ss_pred cccEEEECCCC
Q psy1959 232 YANVVFEAVGG 242 (296)
Q Consensus 232 g~d~vld~~g~ 242 (296)
.+|+++.+.|.
T Consensus 124 ~iD~lI~~Ag~ 134 (290)
T PRK06701 124 RLDILVNNAAF 134 (290)
T ss_pred CCCEEEECCcc
Confidence 68999998874
No 318
>PRK12937 short chain dehydrogenase; Provisional
Probab=95.29 E-value=0.13 Score=44.32 Aligned_cols=81 Identities=16% Similarity=0.128 Sum_probs=48.9
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc-hHH----HHHhcCCcEE---EEcCCchhHHHHHHHHh-CCC
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED-KTD----LIRQKGAWAA---LTFTNEKSLVNKVLEVS-GGK 231 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~-~~~----~~~~~g~~~~---~~~~~~~~~~~~i~~~~-~~~ 231 (296)
++.+++|+|++|++|+..++.+ ...|++++.+.++.. +.+ .++..+.... .+..+..+..+.+.+.. ...
T Consensus 4 ~~~~vlItG~~~~iG~~la~~l-~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (245)
T PRK12937 4 SNKVAIVTGASRGIGAAIARRL-AADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAFG 82 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 5689999999999999988887 457999887765433 222 2223333222 22233233333333321 123
Q ss_pred cccEEEECCCC
Q psy1959 232 YANVVFEAVGG 242 (296)
Q Consensus 232 g~d~vld~~g~ 242 (296)
++|+++.+.|.
T Consensus 83 ~id~vi~~ag~ 93 (245)
T PRK12937 83 RIDVLVNNAGV 93 (245)
T ss_pred CCCEEEECCCC
Confidence 68999999884
No 319
>KOG1208|consensus
Probab=95.28 E-value=0.099 Score=47.54 Aligned_cols=79 Identities=16% Similarity=0.288 Sum_probs=52.1
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-c----CCcEE----EEcCCc---hhHHHHHHHHh
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-K----GAWAA----LTFTNE---KSLVNKVLEVS 228 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~----g~~~~----~~~~~~---~~~~~~i~~~~ 228 (296)
.|.+++|+|+++|+|..++..+ ...|++|+.++++.++...+++ . ....+ ++.... ..+.+.+.+
T Consensus 34 ~~~~~vVTGansGIG~eta~~L-a~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~-- 110 (314)
T KOG1208|consen 34 SGKVALVTGATSGIGFETAREL-ALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKK-- 110 (314)
T ss_pred CCcEEEEECCCCchHHHHHHHH-HhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHh--
Confidence 5689999999999999988777 5579999999999876655543 2 12221 222221 222233322
Q ss_pred CCCcccEEEECCCC
Q psy1959 229 GGKYANVVFEAVGG 242 (296)
Q Consensus 229 ~~~g~d~vld~~g~ 242 (296)
.....|+.+++.|-
T Consensus 111 ~~~~ldvLInNAGV 124 (314)
T KOG1208|consen 111 KEGPLDVLINNAGV 124 (314)
T ss_pred cCCCccEEEeCccc
Confidence 23478999998883
No 320
>PRK07775 short chain dehydrogenase; Provisional
Probab=95.28 E-value=0.12 Score=45.65 Aligned_cols=81 Identities=20% Similarity=0.190 Sum_probs=51.3
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHh-CCCc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVS-GGKY 232 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~-~~~g 232 (296)
+..+++|+|++|++|.++++.+ ...|++|++++++.++.+.+. ..+.... .+..+..+..+.+.+.. .-..
T Consensus 9 ~~~~vlVtGa~g~iG~~la~~L-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 87 (274)
T PRK07775 9 DRRPALVAGASSGIGAATAIEL-AAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEALGE 87 (274)
T ss_pred CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 3568999999999999988877 447999999988766554332 2343322 23333233333333321 1136
Q ss_pred ccEEEECCCC
Q psy1959 233 ANVVFEAVGG 242 (296)
Q Consensus 233 ~d~vld~~g~ 242 (296)
+|.+|.+.|.
T Consensus 88 id~vi~~Ag~ 97 (274)
T PRK07775 88 IEVLVSGAGD 97 (274)
T ss_pred CCEEEECCCc
Confidence 8999999875
No 321
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.27 E-value=0.15 Score=44.18 Aligned_cols=79 Identities=13% Similarity=0.066 Sum_probs=48.2
Q ss_pred cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc-hHH----HHHhcCCcE-E--EEcCCchhHHHHHHHHhC-CCcc
Q psy1959 163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED-KTD----LIRQKGAWA-A--LTFTNEKSLVNKVLEVSG-GKYA 233 (296)
Q Consensus 163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~-~~~----~~~~~g~~~-~--~~~~~~~~~~~~i~~~~~-~~g~ 233 (296)
++++|+|++|++|..++..+ ...|++|++++++.. +.+ .++..+... . .+..+..+..+.+.+... ...+
T Consensus 3 k~vlItG~sg~iG~~la~~L-~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 81 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARAL-AAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWGRI 81 (256)
T ss_pred cEEEEeCCCchHHHHHHHHH-HHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence 57999999999999888777 457999999987543 222 222223221 1 233332333333333321 1368
Q ss_pred cEEEECCCC
Q psy1959 234 NVVFEAVGG 242 (296)
Q Consensus 234 d~vld~~g~ 242 (296)
|+++.+.|.
T Consensus 82 d~vi~~ag~ 90 (256)
T PRK12745 82 DCLVNNAGV 90 (256)
T ss_pred CEEEECCcc
Confidence 999999874
No 322
>PRK06940 short chain dehydrogenase; Provisional
Probab=95.26 E-value=0.17 Score=44.82 Aligned_cols=78 Identities=18% Similarity=0.169 Sum_probs=50.5
Q ss_pred CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcE-E--EEcCCchhHHHHHHHHhCCCccc
Q psy1959 162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWA-A--LTFTNEKSLVNKVLEVSGGKYAN 234 (296)
Q Consensus 162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~-~--~~~~~~~~~~~~i~~~~~~~g~d 234 (296)
+++++|.|+ |++|.+++..+ . .|++|+.+++++++.+.+. +.+... . .+..+..+..+.+.+......+|
T Consensus 2 ~k~~lItGa-~gIG~~la~~l-~-~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id 78 (275)
T PRK06940 2 KEVVVVIGA-GGIGQAIARRV-G-AGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVT 78 (275)
T ss_pred CCEEEEECC-ChHHHHHHHHH-h-CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence 357899997 79999988888 4 6999999999877654432 223322 1 34444234444443332223699
Q ss_pred EEEECCCC
Q psy1959 235 VVFEAVGG 242 (296)
Q Consensus 235 ~vld~~g~ 242 (296)
+++++.|.
T Consensus 79 ~li~nAG~ 86 (275)
T PRK06940 79 GLVHTAGV 86 (275)
T ss_pred EEEECCCc
Confidence 99999985
No 323
>PRK05599 hypothetical protein; Provisional
Probab=95.26 E-value=0.11 Score=45.25 Aligned_cols=77 Identities=10% Similarity=0.085 Sum_probs=50.1
Q ss_pred EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCc--EE--EEcCCchhHHHHHHHHhC-CCccc
Q psy1959 164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAW--AA--LTFTNEKSLVNKVLEVSG-GKYAN 234 (296)
Q Consensus 164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~--~~--~~~~~~~~~~~~i~~~~~-~~g~d 234 (296)
+++|+|+++++|.+.++.. . .|++|+++.+++++.+.+. +.+.. .. .+..+..+..+.+.+... ...+|
T Consensus 2 ~vlItGas~GIG~aia~~l-~-~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id 79 (246)
T PRK05599 2 SILILGGTSDIAGEIATLL-C-HGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEIS 79 (246)
T ss_pred eEEEEeCccHHHHHHHHHH-h-CCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCCC
Confidence 6899999999999988877 4 4899999999887765442 33432 12 233332333333333321 23689
Q ss_pred EEEECCCC
Q psy1959 235 VVFEAVGG 242 (296)
Q Consensus 235 ~vld~~g~ 242 (296)
+++.+.|.
T Consensus 80 ~lv~nag~ 87 (246)
T PRK05599 80 LAVVAFGI 87 (246)
T ss_pred EEEEecCc
Confidence 99998884
No 324
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=95.25 E-value=0.078 Score=47.58 Aligned_cols=146 Identities=12% Similarity=0.074 Sum_probs=83.7
Q ss_pred CCCCCCEEEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHH
Q psy1959 98 VLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLA 177 (296)
Q Consensus 98 ~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~a 177 (296)
.+.+|++.+..+. |.++...+....+.+..++.+..+.- + ........+.+. .+++++|+-.|+ |. |..
T Consensus 105 p~~~g~~~~i~p~-----w~~~~~~~~~~~i~ldpg~aFgtG~h-~-tt~l~l~~l~~~--~~~g~~VLDvGc-Gs-G~l 173 (288)
T TIGR00406 105 PVQFGKRFWICPS-----WRDVPSDEDALIIMLDPGLAFGTGTH-P-TTSLCLEWLEDL--DLKDKNVIDVGC-GS-GIL 173 (288)
T ss_pred CEEEcCeEEEECC-----CcCCCCCCCcEEEEECCCCcccCCCC-H-HHHHHHHHHHhh--cCCCCEEEEeCC-Ch-hHH
Confidence 4778888877765 44443223345566777765543310 0 111122233222 457899999996 55 888
Q ss_pred HHHHHHHhCCCEEEEEeCCcchHHHHHhc----CCcE-EEEcCCchhHHHHHHHHhCCCcccEEEECCCCc----cHHHH
Q psy1959 178 AVDMATKIYKAKVIGVCNSEDKTDLIRQK----GAWA-ALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE----DKTDL 248 (296)
Q Consensus 178 a~~la~~~~g~~Vi~~~~~~~~~~~~~~~----g~~~-~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~----~~~~~ 248 (296)
++.++ +....+|++++.++...+.+++. +... ...... + ..... ..++|+++.+.... .+..+
T Consensus 174 ai~aa-~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~--~----~~~~~-~~~fDlVvan~~~~~l~~ll~~~ 245 (288)
T TIGR00406 174 SIAAL-KLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLI--Y----LEQPI-EGKADVIVANILAEVIKELYPQF 245 (288)
T ss_pred HHHHH-HcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEec--c----ccccc-CCCceEEEEecCHHHHHHHHHHH
Confidence 77777 54334999999998877777653 2221 111111 1 11111 34799999866543 34556
Q ss_pred HHHhhccCceEEeec
Q psy1959 249 IRQKGAWAALTFTNE 263 (296)
Q Consensus 249 ~~~lg~~~g~~~~~~ 263 (296)
.+.| +++|.+.+..
T Consensus 246 ~~~L-kpgG~li~sg 259 (288)
T TIGR00406 246 SRLV-KPGGWLILSG 259 (288)
T ss_pred HHHc-CCCcEEEEEe
Confidence 6777 8888886654
No 325
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=95.23 E-value=0.21 Score=42.02 Aligned_cols=101 Identities=15% Similarity=0.161 Sum_probs=65.5
Q ss_pred HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhC-CCEEEEEeCCcchHHHHHh----cCC-cEEEEcCCchhHHHHHHHHh
Q psy1959 155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIY-KAKVIGVCNSEDKTDLIRQ----KGA-WAALTFTNEKSLVNKVLEVS 228 (296)
Q Consensus 155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~-g~~Vi~~~~~~~~~~~~~~----~g~-~~~~~~~~~~~~~~~i~~~~ 228 (296)
...++.++++++-.|+ |. |..++.+++... +.+|++++.+++..+.+++ ++. +.+.... .+..+.+...
T Consensus 34 ~~l~~~~~~~vlDlG~-Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~--~d~~~~l~~~- 108 (198)
T PRK00377 34 SKLRLRKGDMILDIGC-GT-GSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIK--GEAPEILFTI- 108 (198)
T ss_pred HHcCCCCcCEEEEeCC-cC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEE--echhhhHhhc-
Confidence 4567889999999997 66 888888884332 3599999999888776643 452 2221111 1222222222
Q ss_pred CCCcccEEEECCCC----ccHHHHHHHhhccCceEEee
Q psy1959 229 GGKYANVVFEAVGG----EDKTDLIRQKGAWAALTFTN 262 (296)
Q Consensus 229 ~~~g~d~vld~~g~----~~~~~~~~~lg~~~g~~~~~ 262 (296)
...+|.++...+. ..+..+.+.| +++|.+.+.
T Consensus 109 -~~~~D~V~~~~~~~~~~~~l~~~~~~L-kpgG~lv~~ 144 (198)
T PRK00377 109 -NEKFDRIFIGGGSEKLKEIISASWEII-KKGGRIVID 144 (198)
T ss_pred -CCCCCEEEECCCcccHHHHHHHHHHHc-CCCcEEEEE
Confidence 2379999986653 2466777788 888887653
No 326
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.22 E-value=0.094 Score=45.08 Aligned_cols=80 Identities=21% Similarity=0.249 Sum_probs=49.3
Q ss_pred CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEE-eCCcchHHHHHh----cCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959 162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGV-CNSEDKTDLIRQ----KGAWAA---LTFTNEKSLVNKVLEVSG-GKY 232 (296)
Q Consensus 162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~-~~~~~~~~~~~~----~g~~~~---~~~~~~~~~~~~i~~~~~-~~g 232 (296)
+++++|.|++|++|...+..+ ...|++|+++ +++.++.+.+.+ .+.... .+..+..++.+.+.+... -.+
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l-~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELL-AKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEKFGK 83 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 568999999999999988776 3469999998 887766544332 222221 222332233232322211 126
Q ss_pred ccEEEECCCC
Q psy1959 233 ANVVFEAVGG 242 (296)
Q Consensus 233 ~d~vld~~g~ 242 (296)
+|++|.+.|.
T Consensus 84 id~vi~~ag~ 93 (247)
T PRK05565 84 IDILVNNAGI 93 (247)
T ss_pred CCEEEECCCc
Confidence 9999998874
No 327
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=95.22 E-value=0.097 Score=49.09 Aligned_cols=82 Identities=23% Similarity=0.214 Sum_probs=52.0
Q ss_pred CCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHH-------HHHhc-CCcEE-EEcCCchhHHHHHHHHh
Q psy1959 158 KLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTD-------LIRQK-GAWAA-LTFTNEKSLVNKVLEVS 228 (296)
Q Consensus 158 ~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~-------~~~~~-g~~~~-~~~~~~~~~~~~i~~~~ 228 (296)
+...+.+|+|+|++|.+|..+++.+ ...|.+|++++++..+.. ..... +...+ .+..+...+.+.+.+.
T Consensus 56 ~~~~~~kVLVtGatG~IG~~l~~~L-l~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~- 133 (390)
T PLN02657 56 KEPKDVTVLVVGATGYIGKFVVREL-VRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSE- 133 (390)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHh-
Confidence 3456789999999999999998887 447999999998765431 11111 22222 3344423333333322
Q ss_pred CCCcccEEEECCCC
Q psy1959 229 GGKYANVVFEAVGG 242 (296)
Q Consensus 229 ~~~g~d~vld~~g~ 242 (296)
+.++|+|++|.+.
T Consensus 134 -~~~~D~Vi~~aa~ 146 (390)
T PLN02657 134 -GDPVDVVVSCLAS 146 (390)
T ss_pred -CCCCcEEEECCcc
Confidence 1269999999874
No 328
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.19 E-value=0.11 Score=45.00 Aligned_cols=80 Identities=28% Similarity=0.268 Sum_probs=47.9
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC-CcchHHHHH-hcCCcE-E--EEcCCchhHHHHHHHHh--CCCcc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN-SEDKTDLIR-QKGAWA-A--LTFTNEKSLVNKVLEVS--GGKYA 233 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~-~~~~~~~~~-~~g~~~-~--~~~~~~~~~~~~i~~~~--~~~g~ 233 (296)
.+++++|+|++|++|..++..+ ...|++|+...+ ++++.+.+. +.+... . .+..+..+..+.+.+.. .+..+
T Consensus 4 ~~k~ilItGas~gIG~~la~~l-~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~i 82 (253)
T PRK08642 4 SEQTVLVTGGSRGLGAAIARAF-AREGARVVVNYHQSEDAAEALADELGDRAIALQADVTDREQVQAMFATATEHFGKPI 82 (253)
T ss_pred CCCEEEEeCCCCcHHHHHHHHH-HHCCCeEEEEcCCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHhCCCC
Confidence 3578999999999999988877 457999987654 444444333 233221 1 23333233333333321 12249
Q ss_pred cEEEECCC
Q psy1959 234 NVVFEAVG 241 (296)
Q Consensus 234 d~vld~~g 241 (296)
|+++.+.|
T Consensus 83 d~li~~ag 90 (253)
T PRK08642 83 TTVVNNAL 90 (253)
T ss_pred eEEEECCC
Confidence 99999876
No 329
>PRK07201 short chain dehydrogenase; Provisional
Probab=95.19 E-value=0.11 Score=51.89 Aligned_cols=80 Identities=21% Similarity=0.242 Sum_probs=53.1
Q ss_pred CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC-CCcc
Q psy1959 162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG-GKYA 233 (296)
Q Consensus 162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~ 233 (296)
+++++|+|++|++|..++..+ ...|++|+++++++++.+.+. +.+.... .+..+..+..+.+.+... ...+
T Consensus 371 ~k~vlItGas~giG~~la~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i 449 (657)
T PRK07201 371 GKVVLITGASSGIGRATAIKV-AEAGATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAEHGHV 449 (657)
T ss_pred CCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence 678999999999999988777 447999999999887765443 2233222 233332344444443321 1268
Q ss_pred cEEEECCCC
Q psy1959 234 NVVFEAVGG 242 (296)
Q Consensus 234 d~vld~~g~ 242 (296)
|+++.+.|.
T Consensus 450 d~li~~Ag~ 458 (657)
T PRK07201 450 DYLVNNAGR 458 (657)
T ss_pred CEEEECCCC
Confidence 999999984
No 330
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=95.13 E-value=0.19 Score=47.11 Aligned_cols=107 Identities=19% Similarity=0.156 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHH
Q psy1959 145 SYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKV 224 (296)
Q Consensus 145 ~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i 224 (296)
+-...+..+.+..++++|++||-+|+ |.|..+..++ +..+++|+.++.+++..+.+++......+.... .++.
T Consensus 151 Aq~~k~~~l~~~l~l~~g~rVLDIGc--G~G~~a~~la-~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~-~D~~--- 223 (383)
T PRK11705 151 AQEAKLDLICRKLQLKPGMRVLDIGC--GWGGLARYAA-EHYGVSVVGVTISAEQQKLAQERCAGLPVEIRL-QDYR--- 223 (383)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCC--CccHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEE-Cchh---
Confidence 33445555557778899999999996 5678888888 557899999999999999887753211121111 1221
Q ss_pred HHHhCCCcccEEEEC-----CCC----ccHHHHHHHhhccCceEEee
Q psy1959 225 LEVSGGKYANVVFEA-----VGG----EDKTDLIRQKGAWAALTFTN 262 (296)
Q Consensus 225 ~~~~~~~g~d~vld~-----~g~----~~~~~~~~~lg~~~g~~~~~ 262 (296)
+. ...+|.++.. +|. ..+..+.+.| +++|.+.+.
T Consensus 224 -~l--~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~L-kpGG~lvl~ 266 (383)
T PRK11705 224 -DL--NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCL-KPDGLFLLH 266 (383)
T ss_pred -hc--CCCCCEEEEeCchhhCChHHHHHHHHHHHHHc-CCCcEEEEE
Confidence 11 2368988753 343 2466777788 899988654
No 331
>PRK12747 short chain dehydrogenase; Provisional
Probab=95.13 E-value=0.19 Score=43.65 Aligned_cols=81 Identities=17% Similarity=0.173 Sum_probs=47.9
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEe-CCcchHHHH----HhcCCcEE---EEcCCchhHHHHHHHHh----
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVC-NSEDKTDLI----RQKGAWAA---LTFTNEKSLVNKVLEVS---- 228 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~-~~~~~~~~~----~~~g~~~~---~~~~~~~~~~~~i~~~~---- 228 (296)
.+++++|+|+++++|.++++.+ ...|++|++.. +++++.+.+ ++.+.... .+..+..+....+.+..
T Consensus 3 ~~k~~lItGas~gIG~~ia~~l-~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (252)
T PRK12747 3 KGKVALVTGASRGIGRAIAKRL-ANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQ 81 (252)
T ss_pred CCCEEEEeCCCChHHHHHHHHH-HHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHHhh
Confidence 4689999999999999988877 45799998864 444443322 22232221 22222122222222221
Q ss_pred ---CCCcccEEEECCCC
Q psy1959 229 ---GGKYANVVFEAVGG 242 (296)
Q Consensus 229 ---~~~g~d~vld~~g~ 242 (296)
+...+|+++++.|.
T Consensus 82 ~~~g~~~id~lv~~Ag~ 98 (252)
T PRK12747 82 NRTGSTKFDILINNAGI 98 (252)
T ss_pred hhcCCCCCCEEEECCCc
Confidence 12369999999883
No 332
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=95.11 E-value=0.11 Score=44.65 Aligned_cols=79 Identities=20% Similarity=0.198 Sum_probs=47.6
Q ss_pred cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC-CcchHHHH-Hh---cCCcE---EEEcCCchhHHHHHHHHhC-CCcc
Q psy1959 163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN-SEDKTDLI-RQ---KGAWA---ALTFTNEKSLVNKVLEVSG-GKYA 233 (296)
Q Consensus 163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~-~~~~~~~~-~~---~g~~~---~~~~~~~~~~~~~i~~~~~-~~g~ 233 (296)
++++|+|++|++|...++.+ ...|++|+++.+ ++++.+.. .+ .+... ..+..+...+.+.+.+... ...+
T Consensus 1 k~~lItG~sg~iG~~la~~l-~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRL-AKDGYRVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEAELGPI 79 (242)
T ss_pred CEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 46899999999999988888 457999998887 43333322 22 22211 1233332333333333221 2368
Q ss_pred cEEEECCCC
Q psy1959 234 NVVFEAVGG 242 (296)
Q Consensus 234 d~vld~~g~ 242 (296)
|.+|.+.|.
T Consensus 80 d~vi~~ag~ 88 (242)
T TIGR01829 80 DVLVNNAGI 88 (242)
T ss_pred cEEEECCCC
Confidence 999999974
No 333
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.11 E-value=0.095 Score=46.03 Aligned_cols=81 Identities=9% Similarity=0.064 Sum_probs=49.2
Q ss_pred CCcEEEEEcC--CCcHHHHHHHHHHHhCCCEEEEEeCC---cchHHHH-HhcCCcEE--EEcCCchhHHHHHHHHhC-CC
Q psy1959 161 EKQTVLVTAA--GGGLGLAAVDMATKIYKAKVIGVCNS---EDKTDLI-RQKGAWAA--LTFTNEKSLVNKVLEVSG-GK 231 (296)
Q Consensus 161 ~g~~vlI~Ga--~g~vG~aa~~la~~~~g~~Vi~~~~~---~~~~~~~-~~~g~~~~--~~~~~~~~~~~~i~~~~~-~~ 231 (296)
++++++|+|+ ++++|+++++.+ ...|++|+.+.+. +++.+.+ ++++.... .+..+.++..+.+.+... -.
T Consensus 5 ~~k~vlItGas~~~GIG~a~a~~l-~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 83 (260)
T PRK06997 5 AGKRILITGLLSNRSIAYGIAKAC-KREGAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQHWD 83 (260)
T ss_pred CCcEEEEeCCCCCCcHHHHHHHHH-HHCCCeEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHHHhC
Confidence 5789999996 579999977666 4479999887543 3333333 23343222 333332344444444322 13
Q ss_pred cccEEEECCCC
Q psy1959 232 YANVVFEAVGG 242 (296)
Q Consensus 232 g~d~vld~~g~ 242 (296)
.+|+++++.|.
T Consensus 84 ~iD~lvnnAG~ 94 (260)
T PRK06997 84 GLDGLVHSIGF 94 (260)
T ss_pred CCcEEEEcccc
Confidence 69999999874
No 334
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=95.09 E-value=0.064 Score=40.29 Aligned_cols=93 Identities=16% Similarity=0.097 Sum_probs=61.6
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhc----C--CcEEEEcCCchhHHHHHHHHhCCCccc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK----G--AWAALTFTNEKSLVNKVLEVSGGKYAN 234 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~----g--~~~~~~~~~~~~~~~~i~~~~~~~g~d 234 (296)
|+.+||-.|+ +.|..+..++++..+++|+.++.+++-.+.+++. + ....+...+ + . ........+|
T Consensus 1 p~~~vLDlGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d---~-~--~~~~~~~~~D 72 (112)
T PF12847_consen 1 PGGRVLDLGC--GTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGD---A-E--FDPDFLEPFD 72 (112)
T ss_dssp TTCEEEEETT--TTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESC---C-H--GGTTTSSCEE
T ss_pred CCCEEEEEcC--cCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECc---c-c--cCcccCCCCC
Confidence 6789998885 4488888888545799999999999988777653 2 222233322 2 1 1112234699
Q ss_pred EEEECC-CC----cc------HHHHHHHhhccCceEEee
Q psy1959 235 VVFEAV-GG----ED------KTDLIRQKGAWAALTFTN 262 (296)
Q Consensus 235 ~vld~~-g~----~~------~~~~~~~lg~~~g~~~~~ 262 (296)
+++... .. .. ++.+.+.| +++|.+.++
T Consensus 73 ~v~~~~~~~~~~~~~~~~~~~l~~~~~~L-~pgG~lvi~ 110 (112)
T PF12847_consen 73 LVICSGFTLHFLLPLDERRRVLERIRRLL-KPGGRLVIN 110 (112)
T ss_dssp EEEECSGSGGGCCHHHHHHHHHHHHHHHE-EEEEEEEEE
T ss_pred EEEECCCccccccchhHHHHHHHHHHHhc-CCCcEEEEE
Confidence 999977 22 12 56677777 888888665
No 335
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=95.09 E-value=0.15 Score=43.91 Aligned_cols=81 Identities=17% Similarity=0.142 Sum_probs=49.0
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC-CcchHHHH----HhcCCcEE---EEcCCchhHHHHHHHHhC-CC
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN-SEDKTDLI----RQKGAWAA---LTFTNEKSLVNKVLEVSG-GK 231 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~-~~~~~~~~----~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~ 231 (296)
++++++|+|++|++|..++..+ ...|++|+++.+ ++++.+.+ ++.+.... .+..+.....+.+.+... -.
T Consensus 5 ~~~~~lItG~s~~iG~~la~~l-~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (247)
T PRK12935 5 NGKVAIVTGGAKGIGKAITVAL-AQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNHFG 83 (247)
T ss_pred CCCEEEEECCCCHHHHHHHHHH-HHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4789999999999999988877 447999887654 33333222 23343222 223332333333333321 12
Q ss_pred cccEEEECCCC
Q psy1959 232 YANVVFEAVGG 242 (296)
Q Consensus 232 g~d~vld~~g~ 242 (296)
.+|+++.+.|.
T Consensus 84 ~id~vi~~ag~ 94 (247)
T PRK12935 84 KVDILVNNAGI 94 (247)
T ss_pred CCCEEEECCCC
Confidence 58999999885
No 336
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=95.08 E-value=0.073 Score=44.20 Aligned_cols=71 Identities=14% Similarity=0.130 Sum_probs=49.6
Q ss_pred EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959 164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG 242 (296)
Q Consensus 164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~ 242 (296)
+|.|+|++|-+|...++-| +..|-.|++++++++|+...+..- +...+..+.......+ .|+|+||++.|.
T Consensus 2 KIaiIgAsG~~Gs~i~~EA-~~RGHeVTAivRn~~K~~~~~~~~----i~q~Difd~~~~a~~l---~g~DaVIsA~~~ 72 (211)
T COG2910 2 KIAIIGASGKAGSRILKEA-LKRGHEVTAIVRNASKLAARQGVT----ILQKDIFDLTSLASDL---AGHDAVISAFGA 72 (211)
T ss_pred eEEEEecCchhHHHHHHHH-HhCCCeeEEEEeChHhccccccce----eecccccChhhhHhhh---cCCceEEEeccC
Confidence 5889999999999999999 668999999999999987642221 1111112222221222 489999999885
No 337
>PRK07985 oxidoreductase; Provisional
Probab=95.08 E-value=0.17 Score=45.42 Aligned_cols=81 Identities=20% Similarity=0.114 Sum_probs=49.9
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc--chHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC-C
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE--DKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG-G 230 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~--~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~-~ 230 (296)
++++++|+|+++++|.++++.+ ...|++|+++.++. ++.+.+. +.+.... .+..+..+..+.+.+... .
T Consensus 48 ~~k~vlITGas~gIG~aia~~L-~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 126 (294)
T PRK07985 48 KDRKALVTGGDSGIGRAAAIAY-AREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKAL 126 (294)
T ss_pred CCCEEEEECCCCcHHHHHHHHH-HHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 5689999999999999988877 45799999876543 2333332 2333221 233332333333333321 2
Q ss_pred CcccEEEECCCC
Q psy1959 231 KYANVVFEAVGG 242 (296)
Q Consensus 231 ~g~d~vld~~g~ 242 (296)
.++|+++.+.|.
T Consensus 127 g~id~lv~~Ag~ 138 (294)
T PRK07985 127 GGLDIMALVAGK 138 (294)
T ss_pred CCCCEEEECCCC
Confidence 368999998873
No 338
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=95.05 E-value=0.19 Score=43.83 Aligned_cols=81 Identities=26% Similarity=0.235 Sum_probs=49.9
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc-hHH----HHHhcCCcEE---EEcCCchhHHHHHHHHhC-CC
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED-KTD----LIRQKGAWAA---LTFTNEKSLVNKVLEVSG-GK 231 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~-~~~----~~~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~ 231 (296)
++++++|+|++|++|..+++.+ ...|++|+++.++.. +.. .++..+.... .+..+..+..+.+.+... ..
T Consensus 6 ~~k~~lItGa~~gIG~~ia~~l-~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g 84 (261)
T PRK08936 6 EGKVVVITGGSTGLGRAMAVRF-GKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVKEFG 84 (261)
T ss_pred CCCEEEEeCCCChHHHHHHHHH-HHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 5789999999999999988877 457999888776432 222 2222333221 233332333333333221 23
Q ss_pred cccEEEECCCC
Q psy1959 232 YANVVFEAVGG 242 (296)
Q Consensus 232 g~d~vld~~g~ 242 (296)
.+|+++.+.|.
T Consensus 85 ~id~lv~~ag~ 95 (261)
T PRK08936 85 TLDVMINNAGI 95 (261)
T ss_pred CCCEEEECCCC
Confidence 68999999884
No 339
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=95.03 E-value=0.18 Score=43.60 Aligned_cols=96 Identities=18% Similarity=0.201 Sum_probs=65.8
Q ss_pred CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE--EEcCCchhHHHHHHHHhCCCcccEEE
Q psy1959 160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA--LTFTNEKSLVNKVLEVSGGKYANVVF 237 (296)
Q Consensus 160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~i~~~~~~~g~d~vl 237 (296)
-+|.+||=.|+.| |+++..+| + .|++|+.+|-+++-.+.++......- ++|.. ...+.+.+. +..+|+|+
T Consensus 58 l~g~~vLDvGCGg--G~Lse~mA-r-~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~--~~~edl~~~--~~~FDvV~ 129 (243)
T COG2227 58 LPGLRVLDVGCGG--GILSEPLA-R-LGASVTGIDASEKPIEVAKLHALESGVNIDYRQ--ATVEDLASA--GGQFDVVT 129 (243)
T ss_pred CCCCeEEEecCCc--cHhhHHHH-H-CCCeeEEecCChHHHHHHHHhhhhccccccchh--hhHHHHHhc--CCCccEEE
Confidence 3788898889833 68888888 4 69999999999998888775432221 34433 222333322 35899998
Q ss_pred E-----CCCC--ccHHHHHHHhhccCceEEeecc
Q psy1959 238 E-----AVGG--EDKTDLIRQKGAWAALTFTNEK 264 (296)
Q Consensus 238 d-----~~g~--~~~~~~~~~lg~~~g~~~~~~~ 264 (296)
+ -+-. ..+..+.+++ +++|..+++..
T Consensus 130 cmEVlEHv~dp~~~~~~c~~lv-kP~G~lf~STi 162 (243)
T COG2227 130 CMEVLEHVPDPESFLRACAKLV-KPGGILFLSTI 162 (243)
T ss_pred EhhHHHccCCHHHHHHHHHHHc-CCCcEEEEecc
Confidence 7 3444 3577788888 99999877664
No 340
>PRK05855 short chain dehydrogenase; Validated
Probab=95.03 E-value=0.11 Score=50.84 Aligned_cols=81 Identities=20% Similarity=0.187 Sum_probs=53.4
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG-GKY 232 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g 232 (296)
.+.+++|+|++|++|.+.++.+ ...|++|+++++++++.+.+. +.|.... .+..+.....+.+.+... ...
T Consensus 314 ~~~~~lv~G~s~giG~~~a~~l-~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 392 (582)
T PRK05855 314 SGKLVVVTGAGSGIGRETALAF-AREGAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEHGV 392 (582)
T ss_pred CCCEEEEECCcCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 4688999999999999877777 457999999999887765443 2343222 233332333333333321 236
Q ss_pred ccEEEECCCC
Q psy1959 233 ANVVFEAVGG 242 (296)
Q Consensus 233 ~d~vld~~g~ 242 (296)
+|+++++.|.
T Consensus 393 id~lv~~Ag~ 402 (582)
T PRK05855 393 PDIVVNNAGI 402 (582)
T ss_pred CcEEEECCcc
Confidence 8999999985
No 341
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=95.03 E-value=0.13 Score=44.51 Aligned_cols=76 Identities=25% Similarity=0.207 Sum_probs=48.7
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE---EEcCCchhHHHHHHHHhC-CCcccEE
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA---LTFTNEKSLVNKVLEVSG-GKYANVV 236 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~d~v 236 (296)
++++++|+|++|++|+..++.+ ...|++|++++++. +...+.... .+..+...+.+.+.+... ...+|++
T Consensus 7 ~~k~vlItGas~~iG~~la~~l-~~~G~~v~~~~~~~-----~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v 80 (252)
T PRK08220 7 SGKTVWVTGAAQGIGYAVALAF-VEAGAKVIGFDQAF-----LTQEDYPFATFVLDVSDAAAVAQVCQRLLAETGPLDVL 80 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEecch-----hhhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 4689999999999999988877 44799999998765 222222211 233332333333333321 1358999
Q ss_pred EECCCC
Q psy1959 237 FEAVGG 242 (296)
Q Consensus 237 ld~~g~ 242 (296)
+.+.|.
T Consensus 81 i~~ag~ 86 (252)
T PRK08220 81 VNAAGI 86 (252)
T ss_pred EECCCc
Confidence 999885
No 342
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.03 E-value=0.15 Score=44.00 Aligned_cols=81 Identities=14% Similarity=0.186 Sum_probs=47.8
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc-chH----HHHHhcCCcEE---EEcCCchhHHHHHHHHhC-CC
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE-DKT----DLIRQKGAWAA---LTFTNEKSLVNKVLEVSG-GK 231 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~-~~~----~~~~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~ 231 (296)
.+.+++|+|++|++|.+.++-+ ...|++|+...++. ++. ..+++.+.... .+..+..+....+.+... -.
T Consensus 5 ~~~~vlitGasg~iG~~l~~~l-~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (252)
T PRK06077 5 KDKVVVVTGSGRGIGRAIAVRL-AKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATIDRYG 83 (252)
T ss_pred CCcEEEEeCCCChHHHHHHHHH-HHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHHHcC
Confidence 3679999999999999887766 34799987766432 222 22233333222 233332333333333211 13
Q ss_pred cccEEEECCCC
Q psy1959 232 YANVVFEAVGG 242 (296)
Q Consensus 232 g~d~vld~~g~ 242 (296)
.+|++|.+.|.
T Consensus 84 ~~d~vi~~ag~ 94 (252)
T PRK06077 84 VADILVNNAGL 94 (252)
T ss_pred CCCEEEECCCC
Confidence 68999999984
No 343
>PRK09134 short chain dehydrogenase; Provisional
Probab=95.01 E-value=0.21 Score=43.58 Aligned_cols=81 Identities=19% Similarity=0.124 Sum_probs=49.2
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCC-cchHHHH----HhcCCcEE---EEcCCchhHHHHHHHHhC-CC
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNS-EDKTDLI----RQKGAWAA---LTFTNEKSLVNKVLEVSG-GK 231 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~-~~~~~~~----~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~ 231 (296)
.+++++|+|++|++|..+++.+ ...|++|+.+++. .++.+.+ +..+.... .+..+..+..+.+.+... ..
T Consensus 8 ~~k~vlItGas~giG~~la~~l-~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~ 86 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDL-AAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARASAALG 86 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4678999999999999988777 4479999887654 3333322 22233221 233332333333333321 23
Q ss_pred cccEEEECCCC
Q psy1959 232 YANVVFEAVGG 242 (296)
Q Consensus 232 g~d~vld~~g~ 242 (296)
.+|+++.+.|.
T Consensus 87 ~iD~vi~~ag~ 97 (258)
T PRK09134 87 PITLLVNNASL 97 (258)
T ss_pred CCCEEEECCcC
Confidence 68999999874
No 344
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=94.97 E-value=0.46 Score=39.59 Aligned_cols=99 Identities=20% Similarity=0.077 Sum_probs=59.6
Q ss_pred HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHh-CCCEEEEEeCCcchHHHHHhcCCcEE-EEcCCchhHHHHHHHHhCCCc
Q psy1959 155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKI-YKAKVIGVCNSEDKTDLIRQKGAWAA-LTFTNEKSLVNKVLEVSGGKY 232 (296)
Q Consensus 155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~-~g~~Vi~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~~g 232 (296)
+...+++|++||.+|+ |. |..+..++++. ...+|++++.++.. ...++... .+..+ ....+.+.+.....+
T Consensus 26 ~~~~i~~g~~VLDiG~-Gt-G~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~-~~~~~~l~~~~~~~~ 98 (188)
T TIGR00438 26 KFKLIKPGDTVLDLGA-AP-GGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTD-EEVLNKIRERVGDDK 98 (188)
T ss_pred HhcccCCCCEEEEecC-CC-CHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCC-hhHHHHHHHHhCCCC
Confidence 3556789999999997 44 33444444333 24589999988754 11233222 23322 333445555555668
Q ss_pred ccEEEEC-----CCC-------------ccHHHHHHHhhccCceEEe
Q psy1959 233 ANVVFEA-----VGG-------------EDKTDLIRQKGAWAALTFT 261 (296)
Q Consensus 233 ~d~vld~-----~g~-------------~~~~~~~~~lg~~~g~~~~ 261 (296)
+|+|+.. .|. ..+..+.+.| +++|.+.+
T Consensus 99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~L-kpgG~lvi 144 (188)
T TIGR00438 99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVL-KPKGNFVV 144 (188)
T ss_pred ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHc-cCCCEEEE
Confidence 9999963 221 2456677888 88888865
No 345
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=94.91 E-value=0.14 Score=44.28 Aligned_cols=79 Identities=16% Similarity=0.151 Sum_probs=49.7
Q ss_pred cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH----HhcCCcEE---EEcCCchhHHHHHHHHhC-CCccc
Q psy1959 163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI----RQKGAWAA---LTFTNEKSLVNKVLEVSG-GKYAN 234 (296)
Q Consensus 163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~----~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~d 234 (296)
++++|.|++|++|...++.+ ...|++|+.+.+++++...+ +..+.... .+..+..+..+.+.+... ...+|
T Consensus 1 k~~lItG~sg~iG~~la~~l-~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id 79 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERL-AKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFD 79 (254)
T ss_pred CEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 36899999999999988887 45799999999876654332 22333221 233332333333333321 12689
Q ss_pred EEEECCCC
Q psy1959 235 VVFEAVGG 242 (296)
Q Consensus 235 ~vld~~g~ 242 (296)
+++.+.|.
T Consensus 80 ~vi~~ag~ 87 (254)
T TIGR02415 80 VMVNNAGV 87 (254)
T ss_pred EEEECCCc
Confidence 99999874
No 346
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.85 E-value=0.17 Score=43.40 Aligned_cols=81 Identities=21% Similarity=0.182 Sum_probs=48.6
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch-HHHH----HhcCCcEE---EEcCCchhHHHHHHHHhC-CC
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK-TDLI----RQKGAWAA---LTFTNEKSLVNKVLEVSG-GK 231 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~-~~~~----~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~ 231 (296)
+.++++|+|++|.+|..+++.+ ...|.+|+++.++..+ .+.+ ...+.... .+..+..++.+.+.+... ..
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l-~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 83 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRL-ARAGADVVVHYRSDEEAAEELVEAVEALGRRAQAVQADVTDKAALEAAVAAAVERFG 83 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHH-HHCCCeEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCcCCHHHHHHHHHHHHHHcC
Confidence 3568999999999999998887 4579998776665443 2222 22232221 223332333333333311 23
Q ss_pred cccEEEECCCC
Q psy1959 232 YANVVFEAVGG 242 (296)
Q Consensus 232 g~d~vld~~g~ 242 (296)
++|+++.+.|.
T Consensus 84 ~id~vi~~ag~ 94 (249)
T PRK12825 84 RIDILVNNAGI 94 (249)
T ss_pred CCCEEEECCcc
Confidence 68999999883
No 347
>PRK07023 short chain dehydrogenase; Provisional
Probab=94.84 E-value=0.14 Score=44.15 Aligned_cols=77 Identities=19% Similarity=0.236 Sum_probs=47.6
Q ss_pred EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE---EEcCCchhHHHHHHH----H-hCCCcccE
Q psy1959 164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA---LTFTNEKSLVNKVLE----V-SGGKYANV 235 (296)
Q Consensus 164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~i~~----~-~~~~g~d~ 235 (296)
+++|+|++|++|..+++.+ ...|++|++++++.++.. ....+.... .+..+..+....+.+ . .....+|.
T Consensus 3 ~vlItGasggiG~~ia~~l-~~~G~~v~~~~r~~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (243)
T PRK07023 3 RAIVTGHSRGLGAALAEQL-LQPGIAVLGVARSRHPSL-AAAAGERLAEVELDLSDAAAAAAWLAGDLLAAFVDGASRVL 80 (243)
T ss_pred eEEEecCCcchHHHHHHHH-HhCCCEEEEEecCcchhh-hhccCCeEEEEEeccCCHHHHHHHHHHHHHHHhccCCCceE
Confidence 6899999999999988887 447999999988765422 222332221 233332333332322 1 12236889
Q ss_pred EEECCCC
Q psy1959 236 VFEAVGG 242 (296)
Q Consensus 236 vld~~g~ 242 (296)
++.+.|.
T Consensus 81 ~v~~ag~ 87 (243)
T PRK07023 81 LINNAGT 87 (243)
T ss_pred EEEcCcc
Confidence 9998874
No 348
>KOG1210|consensus
Probab=94.83 E-value=0.17 Score=45.39 Aligned_cols=86 Identities=21% Similarity=0.129 Sum_probs=56.8
Q ss_pred HcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCC----cEEEEcC-Cc---hhHHHHHHH
Q psy1959 156 HAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGA----WAALTFT-NE---KSLVNKVLE 226 (296)
Q Consensus 156 ~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~----~~~~~~~-~~---~~~~~~i~~ 226 (296)
..+.++-..++|.|++.++|++....+ +..|++|.++.++.+|+..++. +.. ..+.... +. +.....+.+
T Consensus 27 ~~~~k~~~hi~itggS~glgl~la~e~-~~~ga~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~ 105 (331)
T KOG1210|consen 27 IVKPKPRRHILITGGSSGLGLALALEC-KREGADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEE 105 (331)
T ss_pred hcccCccceEEEecCcchhhHHHHHHH-HHccCceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhh
Confidence 344556689999999999999999999 6689999999999999988764 322 1111111 10 112222322
Q ss_pred HhC-CCcccEEEECCCC
Q psy1959 227 VSG-GKYANVVFEAVGG 242 (296)
Q Consensus 227 ~~~-~~g~d~vld~~g~ 242 (296)
+-. ..-+|.+|+|.|.
T Consensus 106 l~~~~~~~d~l~~cAG~ 122 (331)
T KOG1210|consen 106 LRDLEGPIDNLFCCAGV 122 (331)
T ss_pred hhhccCCcceEEEecCc
Confidence 211 1257999999985
No 349
>PRK12744 short chain dehydrogenase; Provisional
Probab=94.81 E-value=0.19 Score=43.72 Aligned_cols=81 Identities=15% Similarity=0.190 Sum_probs=48.3
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc----chHHH----HHhcCCcEE---EEcCCchhHHHHHHHHhC
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE----DKTDL----IRQKGAWAA---LTFTNEKSLVNKVLEVSG 229 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~----~~~~~----~~~~g~~~~---~~~~~~~~~~~~i~~~~~ 229 (296)
.+++++|+|++|++|.+.++.+ ...|++|+++.++. ++.+. ++..+.... .+..+..+..+.+.+...
T Consensus 7 ~~k~vlItGa~~gIG~~~a~~l-~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 85 (257)
T PRK12744 7 KGKVVLIAGGAKNLGGLIARDL-AAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKA 85 (257)
T ss_pred CCcEEEEECCCchHHHHHHHHH-HHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHH
Confidence 4679999999999999988888 45799977665432 22221 222343221 233332333333333321
Q ss_pred -CCcccEEEECCCC
Q psy1959 230 -GKYANVVFEAVGG 242 (296)
Q Consensus 230 -~~g~d~vld~~g~ 242 (296)
...+|+++.+.|.
T Consensus 86 ~~~~id~li~~ag~ 99 (257)
T PRK12744 86 AFGRPDIAINTVGK 99 (257)
T ss_pred hhCCCCEEEECCcc
Confidence 2368999999884
No 350
>PRK07069 short chain dehydrogenase; Validated
Probab=94.80 E-value=0.21 Score=43.03 Aligned_cols=77 Identities=21% Similarity=0.149 Sum_probs=48.7
Q ss_pred EEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCC-cchHHHHHh-c----CCcE----EEEcCCchhHHHHHHHHhC-CCcc
Q psy1959 165 VLVTAAGGGLGLAAVDMATKIYKAKVIGVCNS-EDKTDLIRQ-K----GAWA----ALTFTNEKSLVNKVLEVSG-GKYA 233 (296)
Q Consensus 165 vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~-~~~~~~~~~-~----g~~~----~~~~~~~~~~~~~i~~~~~-~~g~ 233 (296)
++|+|++|++|...++.+ ...|++|++++++ .++.+.+.+ + +... ..+..+.+.+.+.+.+... -.++
T Consensus 2 ilVtG~~~~iG~~~a~~l-~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 80 (251)
T PRK07069 2 AFITGAAGGLGRAIARRM-AEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGGL 80 (251)
T ss_pred EEEECCCChHHHHHHHHH-HHCCCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCCc
Confidence 799999999999988877 4479999999987 555544332 1 2111 1234443444444433321 2368
Q ss_pred cEEEECCCC
Q psy1959 234 NVVFEAVGG 242 (296)
Q Consensus 234 d~vld~~g~ 242 (296)
|+++.+.|.
T Consensus 81 d~vi~~ag~ 89 (251)
T PRK07069 81 SVLVNNAGV 89 (251)
T ss_pred cEEEECCCc
Confidence 999999884
No 351
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=94.78 E-value=0.34 Score=45.08 Aligned_cols=97 Identities=11% Similarity=0.127 Sum_probs=63.8
Q ss_pred cEEEEEcCCCcHHHHHHHHHHHhC-CCEEEEEe--CCcchH-HHHHhcCCcEEEEcCCchhH-----------------H
Q psy1959 163 QTVLVTAAGGGLGLAAVDMATKIY-KAKVIGVC--NSEDKT-DLIRQKGAWAALTFTNEKSL-----------------V 221 (296)
Q Consensus 163 ~~vlI~Ga~g~vG~aa~~la~~~~-g~~Vi~~~--~~~~~~-~~~~~~g~~~~~~~~~~~~~-----------------~ 221 (296)
++|.|.|++|++|..++...++.. .++|++++ ++.+++ +.++++++..+...++ ... .
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~-~~~~~l~~~l~~~~~~v~~G~ 80 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADE-EAAKELKEALAAAGIEVLAGE 80 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCH-HHHHHHHHhhccCCceEEECh
Confidence 579999999999999999885432 56888776 333343 3455678766655433 111 1
Q ss_pred HHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEe
Q psy1959 222 NKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFT 261 (296)
Q Consensus 222 ~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~ 261 (296)
+.+.++.....+|+|+.++.+ ..+...+.++ +.|-.+.+
T Consensus 81 ~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai-~aGK~VaL 120 (385)
T PRK05447 81 EGLCELAALPEADVVVAAIVGAAGLLPTLAAI-RAGKRIAL 120 (385)
T ss_pred hHHHHHhcCCCCCEEEEeCcCcccHHHHHHHH-HCCCcEEE
Confidence 122233333469999999988 6888888888 66655533
No 352
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=94.74 E-value=0.12 Score=47.16 Aligned_cols=37 Identities=16% Similarity=0.185 Sum_probs=31.4
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED 198 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~ 198 (296)
++++|||+|++|.+|...++.+ ...|.+|+++++..+
T Consensus 5 ~~~~vlVTGatGfiG~~l~~~L-~~~G~~V~~~~r~~~ 41 (340)
T PLN02653 5 PRKVALITGITGQDGSYLTEFL-LSKGYEVHGIIRRSS 41 (340)
T ss_pred CCCEEEEECCCCccHHHHHHHH-HHCCCEEEEEecccc
Confidence 4688999999999999988888 457999999887643
No 353
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=94.70 E-value=0.55 Score=42.87 Aligned_cols=99 Identities=18% Similarity=0.125 Sum_probs=66.1
Q ss_pred HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCC--CEEEEEeCCcchHHHHHh----cCCcEEEEcCCchhHHHHHHHHh
Q psy1959 155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYK--AKVIGVCNSEDKTDLIRQ----KGAWAALTFTNEKSLVNKVLEVS 228 (296)
Q Consensus 155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g--~~Vi~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~i~~~~ 228 (296)
+...++++++||-.|+ | .|..++.+++ ..+ ..|+.++.+++..+.+++ .|.+.+..... +..+.+.
T Consensus 74 ~~L~i~~g~~VLDIG~-G-tG~~a~~LA~-~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~g--D~~~~~~--- 145 (322)
T PRK13943 74 EWVGLDKGMRVLEIGG-G-TGYNAAVMSR-VVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCG--DGYYGVP--- 145 (322)
T ss_pred HhcCCCCCCEEEEEeC-C-ccHHHHHHHH-hcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeC--Chhhccc---
Confidence 4567889999999996 5 5999999994 454 379999999886665543 56543322221 2222111
Q ss_pred CCCcccEEEECCCC-ccHHHHHHHhhccCceEEee
Q psy1959 229 GGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFTN 262 (296)
Q Consensus 229 ~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~~ 262 (296)
....+|+++.+.+. ......++.+ +.+|.+.+.
T Consensus 146 ~~~~fD~Ii~~~g~~~ip~~~~~~L-kpgG~Lvv~ 179 (322)
T PRK13943 146 EFAPYDVIFVTVGVDEVPETWFTQL-KEGGRVIVP 179 (322)
T ss_pred ccCCccEEEECCchHHhHHHHHHhc-CCCCEEEEE
Confidence 12369999998886 4555678888 888887554
No 354
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.68 E-value=0.24 Score=43.16 Aligned_cols=81 Identities=15% Similarity=0.209 Sum_probs=48.5
Q ss_pred CCcEEEEEcCC--CcHHHHHHHHHHHhCCCEEEEEeCC-----------cchH----HHHHhcCCcEE---EEcCCchhH
Q psy1959 161 EKQTVLVTAAG--GGLGLAAVDMATKIYKAKVIGVCNS-----------EDKT----DLIRQKGAWAA---LTFTNEKSL 220 (296)
Q Consensus 161 ~g~~vlI~Ga~--g~vG~aa~~la~~~~g~~Vi~~~~~-----------~~~~----~~~~~~g~~~~---~~~~~~~~~ 220 (296)
+|++++|+|++ +++|.+.+..+ ...|++|++++++ .++. +.+++.|.... .+..+.++.
T Consensus 5 ~~k~vlVtGas~~~giG~~~a~~l-~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~i 83 (256)
T PRK12859 5 KNKVAVVTGVSRLDGIGAAICKEL-AEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDAP 83 (256)
T ss_pred CCcEEEEECCCCCCChHHHHHHHH-HHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHH
Confidence 57899999997 48999988777 4579999887532 1111 22333454322 233332344
Q ss_pred HHHHHHHhC-CCcccEEEECCCC
Q psy1959 221 VNKVLEVSG-GKYANVVFEAVGG 242 (296)
Q Consensus 221 ~~~i~~~~~-~~g~d~vld~~g~ 242 (296)
.+.+.+... ...+|+++.+.|.
T Consensus 84 ~~~~~~~~~~~g~id~li~~ag~ 106 (256)
T PRK12859 84 KELLNKVTEQLGYPHILVNNAAY 106 (256)
T ss_pred HHHHHHHHHHcCCCcEEEECCCC
Confidence 444443321 1258999999874
No 355
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=94.65 E-value=0.17 Score=45.74 Aligned_cols=40 Identities=18% Similarity=0.091 Sum_probs=32.7
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHH
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTD 201 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~ 201 (296)
.|++|+|+|++|.+|..+++.+ ...|.+|+++.++.++.+
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L-~~~g~~V~~~~r~~~~~~ 43 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLL-LLRGYTVKATVRDLTDRK 43 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEECCCcchH
Confidence 5789999999999999988877 447999998887766543
No 356
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=94.62 E-value=0.18 Score=46.04 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=30.0
Q ss_pred cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc
Q psy1959 163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED 198 (296)
Q Consensus 163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~ 198 (296)
++|||+|++|.+|..+++.+ ...|.+|++++++.+
T Consensus 1 ~~vlVTGatGfIG~~l~~~L-~~~G~~V~~~~r~~~ 35 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFL-LEKGYEVHGLIRRSS 35 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHH-HHCCCEEEEEecCCc
Confidence 47999999999999999888 457999999988654
No 357
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=94.57 E-value=0.51 Score=40.56 Aligned_cols=104 Identities=13% Similarity=0.146 Sum_probs=71.8
Q ss_pred HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhC-CCEEEEEeCCcchHHHHHhc----CCcEE-EEcCCchhHHHHHHHHh
Q psy1959 155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIY-KAKVIGVCNSEDKTDLIRQK----GAWAA-LTFTNEKSLVNKVLEVS 228 (296)
Q Consensus 155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~-g~~Vi~~~~~~~~~~~~~~~----g~~~~-~~~~~~~~~~~~i~~~~ 228 (296)
..++.+..++++=+| +.+|+.++.+|..+. ..+++.++.++++.+.+++. |.+.. ..... .+..+.+.+ .
T Consensus 53 ~L~~~~~~k~iLEiG--T~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~-gdal~~l~~-~ 128 (219)
T COG4122 53 LLARLSGPKRILEIG--TAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLG-GDALDVLSR-L 128 (219)
T ss_pred HHHHhcCCceEEEee--cccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec-CcHHHHHHh-c
Confidence 345566778888887 778999999995544 46899999999998888653 65542 22221 244555554 2
Q ss_pred CCCcccEEEECCCC----ccHHHHHHHhhccCceEEeec
Q psy1959 229 GGKYANVVFEAVGG----EDKTDLIRQKGAWAALTFTNE 263 (296)
Q Consensus 229 ~~~g~d~vld~~g~----~~~~~~~~~lg~~~g~~~~~~ 263 (296)
....+|++|--..- ..++.++++| ++||.+.++.
T Consensus 129 ~~~~fDliFIDadK~~yp~~le~~~~lL-r~GGliv~DN 166 (219)
T COG4122 129 LDGSFDLVFIDADKADYPEYLERALPLL-RPGGLIVADN 166 (219)
T ss_pred cCCCccEEEEeCChhhCHHHHHHHHHHh-CCCcEEEEee
Confidence 24579977765443 4688999999 9999886543
No 358
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=94.55 E-value=0.35 Score=42.90 Aligned_cols=71 Identities=20% Similarity=0.218 Sum_probs=47.1
Q ss_pred CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-c---CCcEEEEcCCchhHHHHHHHHhCCCccc
Q psy1959 159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-K---GAWAALTFTNEKSLVNKVLEVSGGKYAN 234 (296)
Q Consensus 159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~---g~~~~~~~~~~~~~~~~i~~~~~~~g~d 234 (296)
..++++++|.|+ |+.|.+++..+ ...|++|++.++++++.+.+.+ + +....... .+ . ....+|
T Consensus 114 ~~~~k~vliiGa-Gg~g~aia~~L-~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~------~~----~-~~~~~D 180 (270)
T TIGR00507 114 LRPNQRVLIIGA-GGAARAVALPL-LKADCNVIIANRTVSKAEELAERFQRYGEIQAFSM------DE----L-PLHRVD 180 (270)
T ss_pred CccCCEEEEEcC-cHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEech------hh----h-cccCcc
Confidence 346789999998 89999988777 4468899999998877655433 2 21111111 11 0 113589
Q ss_pred EEEECCCC
Q psy1959 235 VVFEAVGG 242 (296)
Q Consensus 235 ~vld~~g~ 242 (296)
++++|++.
T Consensus 181 ivInatp~ 188 (270)
T TIGR00507 181 LIINATSA 188 (270)
T ss_pred EEEECCCC
Confidence 99999875
No 359
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=94.55 E-value=0.18 Score=44.34 Aligned_cols=38 Identities=13% Similarity=0.080 Sum_probs=29.6
Q ss_pred cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCC-cchHH
Q psy1959 163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNS-EDKTD 201 (296)
Q Consensus 163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~-~~~~~ 201 (296)
.+++|+|+++++|++.++.+ ...|++|+++.+. +++.+
T Consensus 2 ~~~lITGas~gIG~~~a~~l-~~~G~~V~~~~~~~~~~~~ 40 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVAL-HQEGYRVVLHYHRSAAAAS 40 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHH-HhCCCeEEEEcCCcHHHHH
Confidence 47899999999999988887 4579999987643 34443
No 360
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=94.53 E-value=0.25 Score=40.98 Aligned_cols=45 Identities=24% Similarity=0.279 Sum_probs=37.1
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcC
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKG 207 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g 207 (296)
.|++|.|+|. |.+|+.+++.+ +.+|++|++.+++........+.+
T Consensus 35 ~g~tvgIiG~-G~IG~~vA~~l-~~fG~~V~~~d~~~~~~~~~~~~~ 79 (178)
T PF02826_consen 35 RGKTVGIIGY-GRIGRAVARRL-KAFGMRVIGYDRSPKPEEGADEFG 79 (178)
T ss_dssp TTSEEEEEST-SHHHHHHHHHH-HHTT-EEEEEESSCHHHHHHHHTT
T ss_pred CCCEEEEEEE-cCCcCeEeeee-ecCCceeEEecccCChhhhccccc
Confidence 6999999997 99999999999 689999999998877665444444
No 361
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=94.53 E-value=0.24 Score=42.73 Aligned_cols=79 Identities=20% Similarity=0.160 Sum_probs=47.4
Q ss_pred cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEe-CCcchHHHH----HhcCCcEE---EEcCCchhHHHHHHHHhC-CCcc
Q psy1959 163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVC-NSEDKTDLI----RQKGAWAA---LTFTNEKSLVNKVLEVSG-GKYA 233 (296)
Q Consensus 163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~-~~~~~~~~~----~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~ 233 (296)
++++|.|++|++|..+++.+ ...|++|+++. +++++.+.+ +..+.... .+..+..+..+.+.++.. ...+
T Consensus 3 k~ilItGas~giG~~la~~l-~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 81 (248)
T PRK06947 3 KVVLITGASRGIGRATAVLA-AARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQSAFGRL 81 (248)
T ss_pred cEEEEeCCCCcHHHHHHHHH-HHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHHhcCCC
Confidence 47999999999999988777 44699987764 444443322 22332222 233332344443433321 2368
Q ss_pred cEEEECCCC
Q psy1959 234 NVVFEAVGG 242 (296)
Q Consensus 234 d~vld~~g~ 242 (296)
|+++.+.|.
T Consensus 82 d~li~~ag~ 90 (248)
T PRK06947 82 DALVNNAGI 90 (248)
T ss_pred CEEEECCcc
Confidence 999999874
No 362
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=94.52 E-value=0.23 Score=38.32 Aligned_cols=87 Identities=13% Similarity=0.129 Sum_probs=51.8
Q ss_pred EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc-hHHHHHhc-C----CcE-EEEcCCchhHHHHHHHHhCCCcccEE
Q psy1959 164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED-KTDLIRQK-G----AWA-ALTFTNEKSLVNKVLEVSGGKYANVV 236 (296)
Q Consensus 164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~-~~~~~~~~-g----~~~-~~~~~~~~~~~~~i~~~~~~~g~d~v 236 (296)
+|.|+|++|-+|...++++.+...++++.+..++. .-+.+.+. . ... .+...+ . +.+ ..+|++
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~-~~~------~~~Dvv 70 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDAD---P-EEL------SDVDVV 70 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETS---G-HHH------TTESEE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecc---h-hHh------hcCCEE
Confidence 58899999999999999997766777666555444 33333322 1 211 121111 1 111 379999
Q ss_pred EECCCCccHHHHHHHhhccCceEEe
Q psy1959 237 FEAVGGEDKTDLIRQKGAWAALTFT 261 (296)
Q Consensus 237 ld~~g~~~~~~~~~~lg~~~g~~~~ 261 (296)
|.|.+..........+ ...|...+
T Consensus 71 f~a~~~~~~~~~~~~~-~~~g~~Vi 94 (121)
T PF01118_consen 71 FLALPHGASKELAPKL-LKAGIKVI 94 (121)
T ss_dssp EE-SCHHHHHHHHHHH-HHTTSEEE
T ss_pred EecCchhHHHHHHHHH-hhCCcEEE
Confidence 9999987666666666 34443433
No 363
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=94.52 E-value=0.25 Score=44.95 Aligned_cols=76 Identities=17% Similarity=0.169 Sum_probs=47.3
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhC-CCEEEEEeCCcchHHHHH-hcCC-cE-EE--EcCCchhHHHHHHHHhCCCccc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIY-KAKVIGVCNSEDKTDLIR-QKGA-WA-AL--TFTNEKSLVNKVLEVSGGKYAN 234 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~-g~~Vi~~~~~~~~~~~~~-~~g~-~~-~~--~~~~~~~~~~~i~~~~~~~g~d 234 (296)
.|.+++|+|++|.+|...++.+.+.. +.+|++++++..+...+. .+.. .. .+ +..+ .+.+.+... ++|
T Consensus 3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d----~~~l~~~~~--~iD 76 (324)
T TIGR03589 3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRD----KERLTRALR--GVD 76 (324)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCC----HHHHHHHHh--cCC
Confidence 46889999999999999888773432 268998887766544332 2221 11 12 3333 123333332 589
Q ss_pred EEEECCCC
Q psy1959 235 VVFEAVGG 242 (296)
Q Consensus 235 ~vld~~g~ 242 (296)
++|.+.|.
T Consensus 77 ~Vih~Ag~ 84 (324)
T TIGR03589 77 YVVHAAAL 84 (324)
T ss_pred EEEECccc
Confidence 99998874
No 364
>PRK07041 short chain dehydrogenase; Provisional
Probab=94.51 E-value=0.24 Score=42.21 Aligned_cols=73 Identities=23% Similarity=0.206 Sum_probs=47.0
Q ss_pred EEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-c--CCcE-E--EEcCCchhHHHHHHHHhCCCcccEEEEC
Q psy1959 166 LVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-K--GAWA-A--LTFTNEKSLVNKVLEVSGGKYANVVFEA 239 (296)
Q Consensus 166 lI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~--g~~~-~--~~~~~~~~~~~~i~~~~~~~g~d~vld~ 239 (296)
+|+|++|++|.+.++.+ ...|++|++++++.++.+.+.+ . +... . .+..+..++.+.+.+ . ..+|.++.+
T Consensus 1 lItGas~~iG~~~a~~l-~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-~--~~id~li~~ 76 (230)
T PRK07041 1 LVVGGSSGIGLALARAF-AAEGARVTIASRSRDRLAAAARALGGGAPVRTAALDITDEAAVDAFFAE-A--GPFDHVVIT 76 (230)
T ss_pred CeecCCChHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHh-c--CCCCEEEEC
Confidence 58899999999888777 4579999999998776554432 2 2222 2 233332333333332 2 368999999
Q ss_pred CCC
Q psy1959 240 VGG 242 (296)
Q Consensus 240 ~g~ 242 (296)
.|.
T Consensus 77 ag~ 79 (230)
T PRK07041 77 AAD 79 (230)
T ss_pred CCC
Confidence 874
No 365
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=94.50 E-value=0.19 Score=41.21 Aligned_cols=51 Identities=25% Similarity=0.303 Sum_probs=40.8
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEE
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALT 213 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~ 213 (296)
+..+|+|+|+ |.+|+.|+.++ +.+|++|+..+...++...++..+...+..
T Consensus 19 ~p~~vvv~G~-G~vg~gA~~~~-~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~ 69 (168)
T PF01262_consen 19 PPAKVVVTGA-GRVGQGAAEIA-KGLGAEVVVPDERPERLRQLESLGAYFIEV 69 (168)
T ss_dssp -T-EEEEEST-SHHHHHHHHHH-HHTT-EEEEEESSHHHHHHHHHTTTEESEE
T ss_pred CCeEEEEECC-CHHHHHHHHHH-hHCCCEEEeccCCHHHHHhhhcccCceEEE
Confidence 3478899997 99999999999 678999999999988888888887755433
No 366
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=94.50 E-value=0.24 Score=44.85 Aligned_cols=75 Identities=13% Similarity=0.096 Sum_probs=47.6
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh---c-CC--c-EEE--EcCCchhHHHHHHHHhCCC
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ---K-GA--W-AAL--TFTNEKSLVNKVLEVSGGK 231 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~---~-g~--~-~~~--~~~~~~~~~~~i~~~~~~~ 231 (296)
.+++++|+|++|.+|..+++.+ ...|++|++++++.++...... . +. . ..+ +..+ . +.+.+...
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d-~---~~~~~~~~-- 76 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLL-LFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLD-E---GSFELAID-- 76 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHH-HHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCC-c---hHHHHHHc--
Confidence 5789999999999999988877 4579999888777654432221 1 11 1 112 2222 1 22333332
Q ss_pred cccEEEECCCC
Q psy1959 232 YANVVFEAVGG 242 (296)
Q Consensus 232 g~d~vld~~g~ 242 (296)
++|+++.+.+.
T Consensus 77 ~~d~vih~A~~ 87 (325)
T PLN02989 77 GCETVFHTASP 87 (325)
T ss_pred CCCEEEEeCCC
Confidence 58999999873
No 367
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=94.43 E-value=0.25 Score=42.44 Aligned_cols=79 Identities=16% Similarity=0.133 Sum_probs=48.7
Q ss_pred cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEE-eCCcchHHHH----HhcCCcEE---EEcCCchhHHHHHHHHh-CCCcc
Q psy1959 163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGV-CNSEDKTDLI----RQKGAWAA---LTFTNEKSLVNKVLEVS-GGKYA 233 (296)
Q Consensus 163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~-~~~~~~~~~~----~~~g~~~~---~~~~~~~~~~~~i~~~~-~~~g~ 233 (296)
++++|+|++|++|...++.+ ...|++|+++ .+++++.... +..+.... .+..+..+..+.+.+.. ...++
T Consensus 2 ~~~lItGa~g~iG~~l~~~l-~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~i 80 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLL-AQEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQHDEPL 80 (247)
T ss_pred CEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCCChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHHhCCCC
Confidence 47899999999999988877 4479998764 4555443322 22232221 23334234444444432 23478
Q ss_pred cEEEECCCC
Q psy1959 234 NVVFEAVGG 242 (296)
Q Consensus 234 d~vld~~g~ 242 (296)
|+++.+.|.
T Consensus 81 d~vi~~ag~ 89 (247)
T PRK09730 81 AALVNNAGI 89 (247)
T ss_pred CEEEECCCC
Confidence 999999984
No 368
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=94.41 E-value=0.32 Score=44.65 Aligned_cols=78 Identities=17% Similarity=0.056 Sum_probs=49.3
Q ss_pred CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hc--CCcE-EEEcCCchhHHHHHHHHhCCCcccE
Q psy1959 160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QK--GAWA-ALTFTNEKSLVNKVLEVSGGKYANV 235 (296)
Q Consensus 160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~--g~~~-~~~~~~~~~~~~~i~~~~~~~g~d~ 235 (296)
..+.+|||+|++|.+|..+++.+ ...|.+|++++++.++.+.+. ++ +... .+.. +..+ .+.+.++.. ++|.
T Consensus 8 ~~~~~vLVtG~~GfIG~~l~~~L-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-Dl~~-~~~~~~~~~--~~d~ 82 (353)
T PLN02896 8 SATGTYCVTGATGYIGSWLVKLL-LQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRA-DLQE-EGSFDEAVK--GCDG 82 (353)
T ss_pred cCCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEEC-CCCC-HHHHHHHHc--CCCE
Confidence 35779999999999999988888 447999999888766554432 21 1111 1221 1111 123333332 5899
Q ss_pred EEECCCC
Q psy1959 236 VFEAVGG 242 (296)
Q Consensus 236 vld~~g~ 242 (296)
||.+.+.
T Consensus 83 Vih~A~~ 89 (353)
T PLN02896 83 VFHVAAS 89 (353)
T ss_pred EEECCcc
Confidence 9998874
No 369
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=94.35 E-value=0.44 Score=45.06 Aligned_cols=73 Identities=18% Similarity=0.174 Sum_probs=50.4
Q ss_pred CCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHh-cCCcEEEEcCCchhHHHHHHHHhCCCcccEEE
Q psy1959 160 KEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQ-KGAWAALTFTNEKSLVNKVLEVSGGKYANVVF 237 (296)
Q Consensus 160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vl 237 (296)
-.+.+++|.|+ |+.|.+++..+ ...|+ +++++.|+.++.+.+.+ ++...... + +.+.+.. ..+|++|
T Consensus 179 l~~kkvlviGa-G~~a~~va~~L-~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~------~-~~l~~~l--~~aDiVI 247 (414)
T PRK13940 179 ISSKNVLIIGA-GQTGELLFRHV-TALAPKQIMLANRTIEKAQKITSAFRNASAHY------L-SELPQLI--KKADIII 247 (414)
T ss_pred ccCCEEEEEcC-cHHHHHHHHHH-HHcCCCEEEEECCCHHHHHHHHHHhcCCeEec------H-HHHHHHh--ccCCEEE
Confidence 36789999997 99999988888 45676 89999998887666654 44112221 1 1222222 2589999
Q ss_pred ECCCCc
Q psy1959 238 EAVGGE 243 (296)
Q Consensus 238 d~~g~~ 243 (296)
+|++.+
T Consensus 248 ~aT~a~ 253 (414)
T PRK13940 248 AAVNVL 253 (414)
T ss_pred ECcCCC
Confidence 999984
No 370
>PRK12827 short chain dehydrogenase; Provisional
Probab=94.32 E-value=0.29 Score=42.04 Aligned_cols=81 Identities=19% Similarity=0.154 Sum_probs=47.9
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCC----cchHHHH----HhcCCcEE---EEcCCchhHHHHHHHHhC
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNS----EDKTDLI----RQKGAWAA---LTFTNEKSLVNKVLEVSG 229 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~----~~~~~~~----~~~g~~~~---~~~~~~~~~~~~i~~~~~ 229 (296)
.+.+++|+|++|++|+..+..+ ...|++|+++++. +++.+.+ .+.+.... .+..+.....+.+.+...
T Consensus 5 ~~~~ilItGasg~iG~~la~~l-~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 83 (249)
T PRK12827 5 DSRRVLITGGSGGLGRAIAVRL-AADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGVE 83 (249)
T ss_pred CCCEEEEECCCChHHHHHHHHH-HHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 3578999999999999988777 4579999886642 2233222 22233222 223332233333333221
Q ss_pred -CCcccEEEECCCC
Q psy1959 230 -GKYANVVFEAVGG 242 (296)
Q Consensus 230 -~~g~d~vld~~g~ 242 (296)
..++|.++.+.|.
T Consensus 84 ~~~~~d~vi~~ag~ 97 (249)
T PRK12827 84 EFGRLDILVNNAGI 97 (249)
T ss_pred HhCCCCEEEECCCC
Confidence 1368999999884
No 371
>KOG4022|consensus
Probab=94.31 E-value=0.097 Score=42.58 Aligned_cols=73 Identities=27% Similarity=0.283 Sum_probs=50.3
Q ss_pred CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHH-------HHHHHHhCCCccc
Q psy1959 162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLV-------NKVLEVSGGKYAN 234 (296)
Q Consensus 162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~~i~~~~~~~g~d 234 (296)
..+|+|+|+-|.+|.+++++. +..++-|.-++.++..... ...+++. + .+|. +++-+...++++|
T Consensus 3 agrVivYGGkGALGSacv~~F-kannywV~siDl~eNe~Ad-----~sI~V~~-~-~swtEQe~~v~~~vg~sL~gekvD 74 (236)
T KOG4022|consen 3 AGRVIVYGGKGALGSACVEFF-KANNYWVLSIDLSENEQAD-----SSILVDG-N-KSWTEQEQSVLEQVGSSLQGEKVD 74 (236)
T ss_pred CceEEEEcCcchHhHHHHHHH-HhcCeEEEEEeeccccccc-----ceEEecC-C-cchhHHHHHHHHHHHHhhcccccc
Confidence 357999999999999999999 6688888888876554321 1122222 2 3333 3344445678999
Q ss_pred EEEECCCC
Q psy1959 235 VVFEAVGG 242 (296)
Q Consensus 235 ~vld~~g~ 242 (296)
.||+-.|+
T Consensus 75 av~CVAGG 82 (236)
T KOG4022|consen 75 AVFCVAGG 82 (236)
T ss_pred eEEEeecc
Confidence 99997774
No 372
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=94.27 E-value=0.13 Score=45.71 Aligned_cols=75 Identities=12% Similarity=0.096 Sum_probs=47.3
Q ss_pred EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcE-EEEcCCchhHHHHHHHHhCCCc-ccEEEECCC
Q psy1959 164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWA-ALTFTNEKSLVNKVLEVSGGKY-ANVVFEAVG 241 (296)
Q Consensus 164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~i~~~~~~~g-~d~vld~~g 241 (296)
+|+|+|++|.+|..+++.+ ...|.+|.+++++.++... .+... ..++.+...+.+.++....-.+ +|.++-+.+
T Consensus 1 ~ilVtGatG~iG~~vv~~L-~~~g~~V~~~~R~~~~~~~---~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~ 76 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLL-QAASVPFLVASRSSSSSAG---PNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAP 76 (285)
T ss_pred CEEEEcCCChHHHHHHHHH-HhCCCcEEEEeCCCccccC---CCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCC
Confidence 4899999999999988887 4469999999998775431 23222 2344442333333322111245 888887766
Q ss_pred C
Q psy1959 242 G 242 (296)
Q Consensus 242 ~ 242 (296)
.
T Consensus 77 ~ 77 (285)
T TIGR03649 77 P 77 (285)
T ss_pred C
Confidence 3
No 373
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=94.22 E-value=0.54 Score=39.19 Aligned_cols=101 Identities=15% Similarity=0.141 Sum_probs=66.0
Q ss_pred HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEEEEcCCchhHHHHHHHHhCC
Q psy1959 155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAALTFTNEKSLVNKVLEVSGG 230 (296)
Q Consensus 155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~i~~~~~~ 230 (296)
....+++|+.++=.|+ +.|..++++++.-...+|++++++++..+..+ .+|.+-+.... .+..+.+...
T Consensus 28 s~L~~~~g~~l~DIGa--GtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~--g~Ap~~L~~~--- 100 (187)
T COG2242 28 SKLRPRPGDRLWDIGA--GTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVE--GDAPEALPDL--- 100 (187)
T ss_pred HhhCCCCCCEEEEeCC--CccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEe--ccchHhhcCC---
Confidence 3457889998877786 33667777773334669999999999887764 35755332222 1223333322
Q ss_pred CcccEEEECCCC---ccHHHHHHHhhccCceEEeec
Q psy1959 231 KYANVVFEAVGG---EDKTDLIRQKGAWAALTFTNE 263 (296)
Q Consensus 231 ~g~d~vld~~g~---~~~~~~~~~lg~~~g~~~~~~ 263 (296)
..+|.+|---|. +.++.+|..| +.+|++..+.
T Consensus 101 ~~~daiFIGGg~~i~~ile~~~~~l-~~ggrlV~na 135 (187)
T COG2242 101 PSPDAIFIGGGGNIEEILEAAWERL-KPGGRLVANA 135 (187)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHc-CcCCeEEEEe
Confidence 257877765443 3688899999 8998886654
No 374
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.19 E-value=0.37 Score=41.17 Aligned_cols=73 Identities=19% Similarity=0.227 Sum_probs=45.3
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECC
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAV 240 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~ 240 (296)
.+++++|+|++|++|.+.+..+ ...|++|++++++..+.. ........-+..+..+.+.+.. ..+|+++++.
T Consensus 4 ~~k~~lVtGas~~iG~~ia~~l-~~~G~~v~~~~r~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~--~~id~lv~~a 75 (235)
T PRK06550 4 MTKTVLITGAASGIGLAQARAF-LAQGAQVYGVDKQDKPDL-----SGNFHFLQLDLSDDLEPLFDWV--PSVDILCNTA 75 (235)
T ss_pred CCCEEEEcCCCchHHHHHHHHH-HHCCCEEEEEeCCccccc-----CCcEEEEECChHHHHHHHHHhh--CCCCEEEECC
Confidence 4678999999999999988877 447999999987654321 1111111111111122233322 3689999998
Q ss_pred C
Q psy1959 241 G 241 (296)
Q Consensus 241 g 241 (296)
|
T Consensus 76 g 76 (235)
T PRK06550 76 G 76 (235)
T ss_pred C
Confidence 7
No 375
>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=94.19 E-value=0.29 Score=42.27 Aligned_cols=81 Identities=19% Similarity=0.191 Sum_probs=50.0
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch--HHHHHhcCC-----cEE---EEcCC-chhHHHHHHHHhC
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK--TDLIRQKGA-----WAA---LTFTN-EKSLVNKVLEVSG 229 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~--~~~~~~~g~-----~~~---~~~~~-~~~~~~~i~~~~~ 229 (296)
.++.++|+|+++++|.+++..+ ...|++|+++.+..++ .+.+.+... ... .+..+ .......+.....
T Consensus 4 ~~~~ilITGas~GiG~aia~~l-~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~~v~~~~~~~~~ 82 (251)
T COG1028 4 SGKVALVTGASSGIGRAIARAL-AREGARVVVAARRSEEEAAEALAAAIKEAGGGRAAAVAADVSDDEESVEALVAAAEE 82 (251)
T ss_pred CCCEEEEeCCCCHHHHHHHHHH-HHCCCeEEEEcCCCchhhHHHHHHHHHhcCCCcEEEEEecCCCCHHHHHHHHHHHHH
Confidence 5789999999999999988777 4579998877776553 333332211 121 23332 2333333333322
Q ss_pred -CCcccEEEECCCC
Q psy1959 230 -GKYANVVFEAVGG 242 (296)
Q Consensus 230 -~~g~d~vld~~g~ 242 (296)
-.++|+++++.|.
T Consensus 83 ~~g~id~lvnnAg~ 96 (251)
T COG1028 83 EFGRIDILVNNAGI 96 (251)
T ss_pred HcCCCCEEEECCCC
Confidence 2359999999985
No 376
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=94.04 E-value=0.34 Score=42.20 Aligned_cols=40 Identities=18% Similarity=0.217 Sum_probs=31.2
Q ss_pred EEEEEcCCCcHHHHHHHHHHH---hCCCEEEEEeCCcchHHHH
Q psy1959 164 TVLVTAAGGGLGLAAVDMATK---IYKAKVIGVCNSEDKTDLI 203 (296)
Q Consensus 164 ~vlI~Ga~g~vG~aa~~la~~---~~g~~Vi~~~~~~~~~~~~ 203 (296)
.++|+|+++++|.+++..+.+ ..|++|+.+.+++++.+.+
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~ 44 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQL 44 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHH
Confidence 589999999999986665423 2589999999988776654
No 377
>PLN02427 UDP-apiose/xylose synthase
Probab=94.03 E-value=0.35 Score=45.03 Aligned_cols=77 Identities=13% Similarity=0.111 Sum_probs=49.2
Q ss_pred CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCC-----c-EEE--EcCCchhHHHHHHHHhCC
Q psy1959 159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGA-----W-AAL--TFTNEKSLVNKVLEVSGG 230 (296)
Q Consensus 159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~-----~-~~~--~~~~~~~~~~~i~~~~~~ 230 (296)
..+..+|+|+|++|-+|..+++.+.+..+.+|++++++.++...+.+.+. . ..+ +..+ .+.+.++..
T Consensus 11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d----~~~l~~~~~- 85 (386)
T PLN02427 11 PIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKH----DSRLEGLIK- 85 (386)
T ss_pred cccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCC----hHHHHHHhh-
Confidence 33456899999999999988887733225899999987766655543321 1 112 2222 123334332
Q ss_pred CcccEEEECCC
Q psy1959 231 KYANVVFEAVG 241 (296)
Q Consensus 231 ~g~d~vld~~g 241 (296)
++|+||.+.+
T Consensus 86 -~~d~ViHlAa 95 (386)
T PLN02427 86 -MADLTINLAA 95 (386)
T ss_pred -cCCEEEEccc
Confidence 5899999886
No 378
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=94.02 E-value=0.26 Score=42.06 Aligned_cols=77 Identities=22% Similarity=0.197 Sum_probs=46.6
Q ss_pred EEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc-chHH----HHHhcCCcEE---EEcCCchhHHHHHHHHhC-CCcccE
Q psy1959 165 VLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE-DKTD----LIRQKGAWAA---LTFTNEKSLVNKVLEVSG-GKYANV 235 (296)
Q Consensus 165 vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~-~~~~----~~~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~d~ 235 (296)
++|+|++|++|..+++.+ ...|++|++++++. ++.+ .+++.+.... .+..+...+.+.+.+... -..+|.
T Consensus 1 vlItG~~g~iG~~la~~l-~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 79 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKL-AKEGAKVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEELGPIDI 79 (239)
T ss_pred CEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence 579999999999988887 44699999998764 2322 2233343222 233332333333322211 136899
Q ss_pred EEECCCC
Q psy1959 236 VFEAVGG 242 (296)
Q Consensus 236 vld~~g~ 242 (296)
++.+.|.
T Consensus 80 vi~~ag~ 86 (239)
T TIGR01830 80 LVNNAGI 86 (239)
T ss_pred EEECCCC
Confidence 9998885
No 379
>PLN02214 cinnamoyl-CoA reductase
Probab=94.01 E-value=0.39 Score=44.00 Aligned_cols=78 Identities=21% Similarity=0.186 Sum_probs=47.6
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHH--HHHhc-C--CcEEEEcCCchhHHHHHHHHhCCCcccE
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTD--LIRQK-G--AWAALTFTNEKSLVNKVLEVSGGKYANV 235 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~--~~~~~-g--~~~~~~~~~~~~~~~~i~~~~~~~g~d~ 235 (296)
++.+|+|+|++|.+|...++.+ ...|.+|++++++.++.. .+.++ + ....+..-+..+ ...+.+... ++|+
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~--~~d~ 84 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKIL-LERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQD-YEALKAAID--GCDG 84 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHH-HHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCC-hHHHHHHHh--cCCE
Confidence 5678999999999999988877 457999999988765422 12222 1 111111111011 123333332 6899
Q ss_pred EEECCCC
Q psy1959 236 VFEAVGG 242 (296)
Q Consensus 236 vld~~g~ 242 (296)
||.+.+.
T Consensus 85 Vih~A~~ 91 (342)
T PLN02214 85 VFHTASP 91 (342)
T ss_pred EEEecCC
Confidence 9999874
No 380
>KOG1200|consensus
Probab=93.99 E-value=0.49 Score=39.84 Aligned_cols=81 Identities=15% Similarity=0.127 Sum_probs=51.6
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHH-HHHhcCC--cEE---EEcCCchhHHHHHHHHhC-CCcc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTD-LIRQKGA--WAA---LTFTNEKSLVNKVLEVSG-GKYA 233 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~-~~~~~g~--~~~---~~~~~~~~~~~~i~~~~~-~~g~ 233 (296)
..+.++|.|++.++|.+..+.. ...|++|.+.+.+.+..+ -++.++. ++. .+-.+..+....+.+... -..+
T Consensus 13 ~sk~~~vtGg~sGIGrAia~~l-a~~Garv~v~dl~~~~A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k~~g~p 91 (256)
T KOG1200|consen 13 MSKVAAVTGGSSGIGRAIAQLL-AKKGARVAVADLDSAAAEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEMEKSLGTP 91 (256)
T ss_pred hcceeEEecCCchHHHHHHHHH-HhcCcEEEEeecchhhHHHHHhhcCCCCccceeeeccCcHHHHHHHHHHHHHhcCCC
Confidence 3467799999999999988888 447999999998666443 4455654 221 222221233222333321 1268
Q ss_pred cEEEECCCC
Q psy1959 234 NVVFEAVGG 242 (296)
Q Consensus 234 d~vld~~g~ 242 (296)
+++++|.|-
T Consensus 92 svlVncAGI 100 (256)
T KOG1200|consen 92 SVLVNCAGI 100 (256)
T ss_pred cEEEEcCcc
Confidence 999999994
No 381
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=93.98 E-value=0.32 Score=39.72 Aligned_cols=85 Identities=18% Similarity=0.138 Sum_probs=55.2
Q ss_pred CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959 159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFE 238 (296)
Q Consensus 159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld 238 (296)
+-.|++++|.|= |-+|.-+++.+ +.+|++|++++.++-+.-.+..-|.... . +.++. ...|+++.
T Consensus 20 ~l~Gk~vvV~GY-G~vG~g~A~~l-r~~Ga~V~V~e~DPi~alqA~~dGf~v~-------~----~~~a~--~~adi~vt 84 (162)
T PF00670_consen 20 MLAGKRVVVIGY-GKVGKGIARAL-RGLGARVTVTEIDPIRALQAAMDGFEVM-------T----LEEAL--RDADIFVT 84 (162)
T ss_dssp --TTSEEEEE---SHHHHHHHHHH-HHTT-EEEEE-SSHHHHHHHHHTT-EEE------------HHHHT--TT-SEEEE
T ss_pred eeCCCEEEEeCC-CcccHHHHHHH-hhCCCEEEEEECChHHHHHhhhcCcEec-------C----HHHHH--hhCCEEEE
Confidence 347999999995 99999999999 6789999999998887777776776421 1 11222 36799999
Q ss_pred CCCCcc--HHHHHHHhhccCceE
Q psy1959 239 AVGGED--KTDLIRQKGAWAALT 259 (296)
Q Consensus 239 ~~g~~~--~~~~~~~lg~~~g~~ 259 (296)
+.|... -.+-++.| +.+..+
T Consensus 85 aTG~~~vi~~e~~~~m-kdgail 106 (162)
T PF00670_consen 85 ATGNKDVITGEHFRQM-KDGAIL 106 (162)
T ss_dssp -SSSSSSB-HHHHHHS--TTEEE
T ss_pred CCCCccccCHHHHHHh-cCCeEE
Confidence 999843 34677778 555444
No 382
>KOG1610|consensus
Probab=93.93 E-value=0.94 Score=40.82 Aligned_cols=84 Identities=18% Similarity=0.174 Sum_probs=58.6
Q ss_pred cCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcC----C-cEEEEcCCc---hhHHHHHHHHh
Q psy1959 157 AKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKG----A-WAALTFTNE---KSLVNKVLEVS 228 (296)
Q Consensus 157 ~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g----~-~~~~~~~~~---~~~~~~i~~~~ 228 (296)
....+++.|+|+|+.+++|...+.-+ ...|.+|++.+..++..+.++..- . +..++..++ ....+.+++..
T Consensus 24 ~~~~~~k~VlITGCDSGfG~~LA~~L-~~~Gf~V~Agcl~~~gae~L~~~~~s~rl~t~~LDVT~~esi~~a~~~V~~~l 102 (322)
T KOG1610|consen 24 LDSLSDKAVLITGCDSGFGRLLAKKL-DKKGFRVFAGCLTEEGAESLRGETKSPRLRTLQLDVTKPESVKEAAQWVKKHL 102 (322)
T ss_pred ccccCCcEEEEecCCcHHHHHHHHHH-HhcCCEEEEEeecCchHHHHhhhhcCCcceeEeeccCCHHHHHHHHHHHHHhc
Confidence 33456788999999999998766666 447999999998888777665422 1 112333332 34445566666
Q ss_pred CCCcccEEEECCC
Q psy1959 229 GGKYANVVFEAVG 241 (296)
Q Consensus 229 ~~~g~d~vld~~g 241 (296)
+..+.-.++++.|
T Consensus 103 ~~~gLwglVNNAG 115 (322)
T KOG1610|consen 103 GEDGLWGLVNNAG 115 (322)
T ss_pred ccccceeEEeccc
Confidence 7778889999998
No 383
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=93.91 E-value=0.37 Score=41.31 Aligned_cols=79 Identities=18% Similarity=0.163 Sum_probs=47.3
Q ss_pred cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc-hHH-HHHhc---CCcE-E--EEcCCchhHHHHHHHHhC-CCcc
Q psy1959 163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED-KTD-LIRQK---GAWA-A--LTFTNEKSLVNKVLEVSG-GKYA 233 (296)
Q Consensus 163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~-~~~-~~~~~---g~~~-~--~~~~~~~~~~~~i~~~~~-~~g~ 233 (296)
++++|+|++|++|+.+++.+ ...|++|+.++++.. ..+ ..... +... . .+..+.....+.+.+... -..+
T Consensus 3 k~vlItG~s~~iG~~la~~l-~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i 81 (245)
T PRK12824 3 KIALVTGAKRGIGSAIAREL-LNDGYRVIATYFSGNDCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEGPV 81 (245)
T ss_pred CEEEEeCCCchHHHHHHHHH-HHcCCEEEEEeCCcHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 47899999999999988877 446999999988743 122 22222 2111 1 223332333333333221 2358
Q ss_pred cEEEECCCC
Q psy1959 234 NVVFEAVGG 242 (296)
Q Consensus 234 d~vld~~g~ 242 (296)
|+++.+.|.
T Consensus 82 d~vi~~ag~ 90 (245)
T PRK12824 82 DILVNNAGI 90 (245)
T ss_pred CEEEECCCC
Confidence 999999874
No 384
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=93.89 E-value=0.2 Score=42.73 Aligned_cols=73 Identities=19% Similarity=0.138 Sum_probs=48.9
Q ss_pred EEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCCcE-EEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959 165 VLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAWA-ALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG 242 (296)
Q Consensus 165 vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~ 242 (296)
|+|+|++|-+|..++..+ ...|.+|+.+.++......... ..... ..+..+...+.+.+.. ..+|.++.+.+.
T Consensus 1 IlI~GatG~iG~~l~~~l-~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~----~~~d~vi~~a~~ 75 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQL-LKKGHEVIVLSRSSNSESFEEKKLNVEFVIGDLTDKEQLEKLLEK----ANIDVVIHLAAF 75 (236)
T ss_dssp EEEETTTSHHHHHHHHHH-HHTTTEEEEEESCSTGGHHHHHHTTEEEEESETTSHHHHHHHHHH----HTESEEEEEBSS
T ss_pred EEEEccCCHHHHHHHHHH-HHcCCccccccccccccccccccceEEEEEeeccccccccccccc----cCceEEEEeecc
Confidence 789999999999999988 5579999988887776655443 22221 1333442233333322 278999999886
No 385
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.87 E-value=0.39 Score=41.75 Aligned_cols=35 Identities=26% Similarity=0.213 Sum_probs=28.3
Q ss_pred CCcEEEEEcCC--CcHHHHHHHHHHHhCCCEEEEEeCC
Q psy1959 161 EKQTVLVTAAG--GGLGLAAVDMATKIYKAKVIGVCNS 196 (296)
Q Consensus 161 ~g~~vlI~Ga~--g~vG~aa~~la~~~~g~~Vi~~~~~ 196 (296)
.+++++|+|++ |++|.+.+..+ ...|++|++++++
T Consensus 4 ~~k~vlItGas~~~giG~~la~~l-~~~G~~vi~~~r~ 40 (256)
T PRK12748 4 MKKIALVTGASRLNGIGAAVCRRL-AAKGIDIFFTYWS 40 (256)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHH-HHcCCcEEEEcCC
Confidence 45789999997 48999877766 3469999999876
No 386
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=93.82 E-value=0.55 Score=42.14 Aligned_cols=35 Identities=20% Similarity=0.156 Sum_probs=28.9
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCE-EEEEeCCc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAK-VIGVCNSE 197 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~-Vi~~~~~~ 197 (296)
++++++|+|+ |+.|.+++..+ ...|++ |+++.++.
T Consensus 125 ~~k~vlI~GA-GGagrAia~~L-a~~G~~~V~I~~R~~ 160 (289)
T PRK12548 125 KGKKLTVIGA-GGAATAIQVQC-ALDGAKEITIFNIKD 160 (289)
T ss_pred CCCEEEEECC-cHHHHHHHHHH-HHCCCCEEEEEeCCc
Confidence 5789999998 89999988776 457884 99999886
No 387
>PRK06123 short chain dehydrogenase; Provisional
Probab=93.81 E-value=0.31 Score=41.99 Aligned_cols=80 Identities=19% Similarity=0.204 Sum_probs=48.1
Q ss_pred CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC-CcchHHH----HHhcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959 162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN-SEDKTDL----IRQKGAWAA---LTFTNEKSLVNKVLEVSG-GKY 232 (296)
Q Consensus 162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~-~~~~~~~----~~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g 232 (296)
+.+++|+|++|++|..+++.. ...|++|+...+ ++++.+. ++..+.... .+..+...+.+.+.+... ...
T Consensus 2 ~~~~lVtG~~~~iG~~~a~~l-~~~G~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK06123 2 RKVMIITGASRGIGAATALLA-AERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRELGR 80 (248)
T ss_pred CCEEEEECCCchHHHHHHHHH-HHCCCeEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHHhCC
Confidence 458999999999999887777 346988877653 3333332 223333221 233432344444443321 236
Q ss_pred ccEEEECCCC
Q psy1959 233 ANVVFEAVGG 242 (296)
Q Consensus 233 ~d~vld~~g~ 242 (296)
+|+++.+.|.
T Consensus 81 id~li~~ag~ 90 (248)
T PRK06123 81 LDALVNNAGI 90 (248)
T ss_pred CCEEEECCCC
Confidence 8999999885
No 388
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=93.81 E-value=1.9 Score=36.45 Aligned_cols=46 Identities=26% Similarity=0.213 Sum_probs=38.6
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhc-CC
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK-GA 208 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~-g~ 208 (296)
.|.+++|.|. |.+|..+++.+ ...|++|++.+++.++.+.+++. ++
T Consensus 27 ~gk~v~I~G~-G~vG~~~A~~L-~~~G~~Vvv~D~~~~~~~~~~~~~g~ 73 (200)
T cd01075 27 EGKTVAVQGL-GKVGYKLAEHL-LEEGAKLIVADINEEAVARAAELFGA 73 (200)
T ss_pred CCCEEEEECC-CHHHHHHHHHH-HHCCCEEEEEcCCHHHHHHHHHHcCC
Confidence 6789999997 99999999999 55899999999988887776543 53
No 389
>PLN02240 UDP-glucose 4-epimerase
Probab=93.73 E-value=0.41 Score=43.70 Aligned_cols=35 Identities=29% Similarity=0.245 Sum_probs=29.3
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCC
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNS 196 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~ 196 (296)
.+++|+|+|++|.+|...++.+ ...|.+|+++++.
T Consensus 4 ~~~~vlItGatG~iG~~l~~~L-~~~g~~V~~~~~~ 38 (352)
T PLN02240 4 MGRTILVTGGAGYIGSHTVLQL-LLAGYKVVVIDNL 38 (352)
T ss_pred CCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCC
Confidence 3578999999999999988887 4468999998764
No 390
>KOG4169|consensus
Probab=93.67 E-value=0.18 Score=43.40 Aligned_cols=80 Identities=21% Similarity=0.266 Sum_probs=53.9
Q ss_pred CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcC---C-cEEEE--c--CCchhHHHHHHHHhCC-Cc
Q psy1959 162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKG---A-WAALT--F--TNEKSLVNKVLEVSGG-KY 232 (296)
Q Consensus 162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g---~-~~~~~--~--~~~~~~~~~i~~~~~~-~g 232 (296)
|+++++.|+.|++|++....+ ...|+++.+++.+.|+.+...++. . ..++. + .+..+..+.+++.... ..
T Consensus 5 GKna~vtggagGIGl~~sk~L-l~kgik~~~i~~~~En~~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~~fg~ 83 (261)
T KOG4169|consen 5 GKNALVTGGAGGIGLATSKAL-LEKGIKVLVIDDSEENPEAIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKILATFGT 83 (261)
T ss_pred CceEEEecCCchhhHHHHHHH-HHcCchheeehhhhhCHHHHHHHhccCCCceEEEEEeccccHHHHHHHHHHHHHHhCc
Confidence 889999999999999977666 457999999998888766555542 2 12221 1 2224555555554322 25
Q ss_pred ccEEEECCCC
Q psy1959 233 ANVVFEAVGG 242 (296)
Q Consensus 233 ~d~vld~~g~ 242 (296)
+|++++..|-
T Consensus 84 iDIlINgAGi 93 (261)
T KOG4169|consen 84 IDILINGAGI 93 (261)
T ss_pred eEEEEccccc
Confidence 8999998884
No 391
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=93.66 E-value=0.34 Score=48.73 Aligned_cols=80 Identities=15% Similarity=0.035 Sum_probs=49.2
Q ss_pred CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhc-CCcEEEEcCCchhHHHHHHHHhCCCcccEEE
Q psy1959 159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK-GAWAALTFTNEKSLVNKVLEVSGGKYANVVF 237 (296)
Q Consensus 159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vl 237 (296)
.+++.+|+|+|++|-+|..+++.+.+..|.+|+++++...+....... +. ..+.. +..+....+.++. .++|+||
T Consensus 312 ~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~~~~~~~~-~~~~g-Dl~d~~~~l~~~l--~~~D~Vi 387 (660)
T PRK08125 312 AKRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISRFLGHPRF-HFVEG-DISIHSEWIEYHI--KKCDVVL 387 (660)
T ss_pred hhcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhhhhcCCCce-EEEec-cccCcHHHHHHHh--cCCCEEE
Confidence 457889999999999999999877333478999999866543322221 11 11211 1111112233333 2689999
Q ss_pred ECCCC
Q psy1959 238 EAVGG 242 (296)
Q Consensus 238 d~~g~ 242 (296)
.+++.
T Consensus 388 HlAa~ 392 (660)
T PRK08125 388 PLVAI 392 (660)
T ss_pred ECccc
Confidence 97763
No 392
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=93.62 E-value=0.2 Score=44.79 Aligned_cols=60 Identities=25% Similarity=0.261 Sum_probs=36.8
Q ss_pred EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959 164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG 242 (296)
Q Consensus 164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~ 242 (296)
+|||+|++|.+|.+..+.+ +..|.+|+.+.+. .++..+.....+.+.+ ..+|+||+|.+-
T Consensus 2 riLI~GasG~lG~~l~~~l-~~~~~~v~~~~r~--------------~~dl~d~~~~~~~~~~----~~pd~Vin~aa~ 61 (286)
T PF04321_consen 2 RILITGASGFLGSALARAL-KERGYEVIATSRS--------------DLDLTDPEAVAKLLEA----FKPDVVINCAAY 61 (286)
T ss_dssp EEEEETTTSHHHHHHHHHH-TTTSEEEEEESTT--------------CS-TTSHHHHHHHHHH----H--SEEEE----
T ss_pred EEEEECCCCHHHHHHHHHH-hhCCCEEEEeCch--------------hcCCCCHHHHHHHHHH----hCCCeEecccee
Confidence 6899999999999999999 5578888888655 1222231223333333 258999999874
No 393
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.62 E-value=0.15 Score=48.50 Aligned_cols=60 Identities=12% Similarity=-0.011 Sum_probs=43.8
Q ss_pred HHcCCCCCcEEE----EEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCc-EEEEcC
Q psy1959 155 RHAKLKEKQTVL----VTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAW-AALTFT 215 (296)
Q Consensus 155 ~~~~~~~g~~vl----I~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~-~~~~~~ 215 (296)
...++++|+.++ |+|++|++|.+++|++ +..|++|+.+...+.+....+..+.. .+++.+
T Consensus 27 ~l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~-~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~d~~ 91 (450)
T PRK08261 27 PLRRYRPGQPLLDGPVLVGGAGRLAEALAALL-AGLGYDVVANNDGGLTWAAGWGDRFGALVFDAT 91 (450)
T ss_pred cccCCCCCCCCCCCceEEccCchhHHHHHHHH-hhCCCeeeecCccccccccCcCCcccEEEEECC
Confidence 355678899988 8898999999999999 56899999887666644444444444 244443
No 394
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=93.46 E-value=0.3 Score=43.12 Aligned_cols=74 Identities=12% Similarity=0.028 Sum_probs=52.3
Q ss_pred EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959 164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG 242 (296)
Q Consensus 164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~ 242 (296)
+|+|.|++|- |...+..+ ...|.+|+++.+++.+.+.+...|...+.... .+.. .+.+.....++|+++|++..
T Consensus 2 ~ILvlGGT~e-gr~la~~L-~~~g~~v~~s~~t~~~~~~~~~~g~~~v~~g~--l~~~-~l~~~l~~~~i~~VIDAtHP 75 (256)
T TIGR00715 2 TVLLMGGTVD-SRAIAKGL-IAQGIEILVTVTTSEGKHLYPIHQALTVHTGA--LDPQ-ELREFLKRHSIDILVDATHP 75 (256)
T ss_pred eEEEEechHH-HHHHHHHH-HhCCCeEEEEEccCCccccccccCCceEEECC--CCHH-HHHHHHHhcCCCEEEEcCCH
Confidence 6899998665 88888666 34689999999999888887777655544322 1222 24444445689999999985
No 395
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=93.45 E-value=0.31 Score=43.77 Aligned_cols=72 Identities=15% Similarity=0.098 Sum_probs=47.8
Q ss_pred EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE-EEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959 164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA-LTFTNEKSLVNKVLEVSGGKYANVVFEAVGG 242 (296)
Q Consensus 164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~ 242 (296)
+++|+|++|.+|..+++.+ ...|.+|++++++.++...+.+.+...+ .+..+ .+.+.+.. +++|+++++.+.
T Consensus 2 ~vlItG~~G~iG~~l~~~L-~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~----~~~l~~~~--~~~d~vi~~a~~ 74 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLL-LEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRD----PASLRKAV--AGCRALFHVAAD 74 (328)
T ss_pred eEEEECCccchhHHHHHHH-HHCCCEEEEEEecCccccccccCCceEEEeeCCC----HHHHHHHH--hCCCEEEEecee
Confidence 6899999999999988888 4579999999987766543333343222 23333 12344433 267999998753
No 396
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=93.44 E-value=0.24 Score=43.77 Aligned_cols=60 Identities=20% Similarity=0.243 Sum_probs=41.3
Q ss_pred EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959 164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG 242 (296)
Q Consensus 164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~ 242 (296)
+|+|+|++|.+|..+++.+ ...|.+|++++++. .+..+ .+.+.+...+..+|+++++.+.
T Consensus 1 kilv~G~tG~iG~~l~~~l-~~~g~~v~~~~r~~--------------~d~~~----~~~~~~~~~~~~~d~vi~~a~~ 60 (287)
T TIGR01214 1 RILITGANGQLGRELVQQL-SPEGRVVVALTSSQ--------------LDLTD----PEALERLLRAIRPDAVVNTAAY 60 (287)
T ss_pred CEEEEcCCCHHHHHHHHHH-HhcCCEEEEeCCcc--------------cCCCC----HHHHHHHHHhCCCCEEEECCcc
Confidence 4799999999999999988 45799999988741 12222 1223333333367999998874
No 397
>KOG1199|consensus
Probab=93.43 E-value=0.66 Score=38.21 Aligned_cols=81 Identities=21% Similarity=0.244 Sum_probs=57.5
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch-HHHHHhcCCcEEEEcCC---chhHHHHHHHHhCC-CcccE
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK-TDLIRQKGAWAALTFTN---EKSLVNKVLEVSGG-KYANV 235 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~-~~~~~~~g~~~~~~~~~---~~~~~~~i~~~~~~-~g~d~ 235 (296)
+|-.-+|+|+.+++|.++..-+.+ .|+.|+..+...+| .+.++++|-..++..-+ .++....+...-.. ...|+
T Consensus 8 kglvalvtggasglg~ataerlak-qgasv~lldlp~skg~~vakelg~~~vf~padvtsekdv~aala~ak~kfgrld~ 86 (260)
T KOG1199|consen 8 KGLVALVTGGASGLGKATAERLAK-QGASVALLDLPQSKGADVAKELGGKVVFTPADVTSEKDVRAALAKAKAKFGRLDA 86 (260)
T ss_pred cCeeEEeecCcccccHHHHHHHHh-cCceEEEEeCCcccchHHHHHhCCceEEeccccCcHHHHHHHHHHHHhhccceee
Confidence 566779999999999998887734 69999999987776 45678898766665433 13443333333221 25899
Q ss_pred EEECCCC
Q psy1959 236 VFEAVGG 242 (296)
Q Consensus 236 vld~~g~ 242 (296)
.++|.|.
T Consensus 87 ~vncagi 93 (260)
T KOG1199|consen 87 LVNCAGI 93 (260)
T ss_pred eeeccce
Confidence 9999985
No 398
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=93.35 E-value=0.65 Score=38.44 Aligned_cols=79 Identities=19% Similarity=0.215 Sum_probs=45.3
Q ss_pred EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc----c---hHHHHHhcCCcEEE---EcCCchhHHHHHHHHhCC-Cc
Q psy1959 164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE----D---KTDLIRQKGAWAAL---TFTNEKSLVNKVLEVSGG-KY 232 (296)
Q Consensus 164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~----~---~~~~~~~~g~~~~~---~~~~~~~~~~~i~~~~~~-~g 232 (296)
+++|+|+.|++|+..++........+++++.++. + ..+.+++.|....+ +..+.....+.+.+.... ..
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~~ 81 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFGP 81 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS-
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccCC
Confidence 6899999999999988887454455999999882 1 23444556664332 223323444444443322 36
Q ss_pred ccEEEECCCC
Q psy1959 233 ANVVFEAVGG 242 (296)
Q Consensus 233 ~d~vld~~g~ 242 (296)
++.||.+.|.
T Consensus 82 i~gVih~ag~ 91 (181)
T PF08659_consen 82 IDGVIHAAGV 91 (181)
T ss_dssp EEEEEE----
T ss_pred cceeeeeeee
Confidence 8999998874
No 399
>PLN00015 protochlorophyllide reductase
Probab=93.33 E-value=0.35 Score=43.60 Aligned_cols=76 Identities=21% Similarity=0.205 Sum_probs=47.8
Q ss_pred EEEcCCCcHHHHHHHHHHHhCC-CEEEEEeCCcchHHHHH-hcC---CcE---EEEcCCchhHHHHHHHHhC-CCcccEE
Q psy1959 166 LVTAAGGGLGLAAVDMATKIYK-AKVIGVCNSEDKTDLIR-QKG---AWA---ALTFTNEKSLVNKVLEVSG-GKYANVV 236 (296)
Q Consensus 166 lI~Ga~g~vG~aa~~la~~~~g-~~Vi~~~~~~~~~~~~~-~~g---~~~---~~~~~~~~~~~~~i~~~~~-~~g~d~v 236 (296)
+|+|+++++|.++++.+ ...| ++|+.+++++++.+.+. +++ ... ..+..+..+..+.+.+... ...+|++
T Consensus 1 lITGas~GIG~aia~~l-~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~l 79 (308)
T PLN00015 1 IITGASSGLGLATAKAL-AETGKWHVVMACRDFLKAERAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDVL 79 (308)
T ss_pred CEeCCCChHHHHHHHHH-HHCCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHhcCCCCCEE
Confidence 58899999999977666 3468 89999998877665443 322 111 1334442333333433322 2368999
Q ss_pred EECCCC
Q psy1959 237 FEAVGG 242 (296)
Q Consensus 237 ld~~g~ 242 (296)
+++.|.
T Consensus 80 InnAG~ 85 (308)
T PLN00015 80 VCNAAV 85 (308)
T ss_pred EECCCc
Confidence 999874
No 400
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=93.32 E-value=0.49 Score=43.31 Aligned_cols=75 Identities=13% Similarity=0.035 Sum_probs=44.8
Q ss_pred EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCC
Q psy1959 164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVG 241 (296)
Q Consensus 164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g 241 (296)
+|+|+|++|-+|...++.+....|.+|++++++.++...+........+..+- .+-.+.+.++. +++|+||.+.+
T Consensus 3 ~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl-~~~~~~~~~~~--~~~d~ViH~aa 77 (347)
T PRK11908 3 KVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLVNHPRMHFFEGDI-TINKEWIEYHV--KKCDVILPLVA 77 (347)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhccCCCeEEEeCCC-CCCHHHHHHHH--cCCCEEEECcc
Confidence 69999999999999888873333689999998665544332211112222111 10112233333 26899999765
No 401
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=93.30 E-value=0.76 Score=33.49 Aligned_cols=76 Identities=21% Similarity=0.159 Sum_probs=50.2
Q ss_pred EEEEEcCCCcHHHHHHHHHHHhCC---CEEEEE-eCCcchHHHHHh-cCCcEEEEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959 164 TVLVTAAGGGLGLAAVDMATKIYK---AKVIGV-CNSEDKTDLIRQ-KGAWAALTFTNEKSLVNKVLEVSGGKYANVVFE 238 (296)
Q Consensus 164 ~vlI~Ga~g~vG~aa~~la~~~~g---~~Vi~~-~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld 238 (296)
+|.+.|+ |.+|.+.++-. ...| .+|+.+ ++++++.+.+++ .+... ... +..+.+. ..|++|-
T Consensus 1 kI~iIG~-G~mg~al~~~l-~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~-~~~----~~~~~~~------~advvil 67 (96)
T PF03807_consen 1 KIGIIGA-GNMGSALARGL-LASGIKPHEVIIVSSRSPEKAAELAKEYGVQA-TAD----DNEEAAQ------EADVVIL 67 (96)
T ss_dssp EEEEEST-SHHHHHHHHHH-HHTTS-GGEEEEEEESSHHHHHHHHHHCTTEE-ESE----EHHHHHH------HTSEEEE
T ss_pred CEEEECC-CHHHHHHHHHH-HHCCCCceeEEeeccCcHHHHHHHHHhhcccc-ccC----ChHHhhc------cCCEEEE
Confidence 4678886 99999988877 4567 789855 899998887754 55322 211 1222221 4789999
Q ss_pred CCCCccHHHHHHHh
Q psy1959 239 AVGGEDKTDLIRQK 252 (296)
Q Consensus 239 ~~g~~~~~~~~~~l 252 (296)
|+-...+...++.+
T Consensus 68 av~p~~~~~v~~~i 81 (96)
T PF03807_consen 68 AVKPQQLPEVLSEI 81 (96)
T ss_dssp -S-GGGHHHHHHHH
T ss_pred EECHHHHHHHHHHH
Confidence 99987777766665
No 402
>PRK07578 short chain dehydrogenase; Provisional
Probab=93.27 E-value=0.5 Score=39.37 Aligned_cols=64 Identities=25% Similarity=0.258 Sum_probs=42.6
Q ss_pred EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959 164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG 242 (296)
Q Consensus 164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~ 242 (296)
+++|.|+++++|.+.+..+.+ . .+|+.+++++. ....+..+..+..+.+.+ . .++|+++.+.|.
T Consensus 2 ~vlItGas~giG~~la~~l~~-~-~~vi~~~r~~~----------~~~~D~~~~~~~~~~~~~-~--~~id~lv~~ag~ 65 (199)
T PRK07578 2 KILVIGASGTIGRAVVAELSK-R-HEVITAGRSSG----------DVQVDITDPASIRALFEK-V--GKVDAVVSAAGK 65 (199)
T ss_pred eEEEEcCCcHHHHHHHHHHHh-c-CcEEEEecCCC----------ceEecCCChHHHHHHHHh-c--CCCCEEEECCCC
Confidence 689999999999987776633 4 89999887643 122344442333333333 2 268999999884
No 403
>PLN02686 cinnamoyl-CoA reductase
Probab=93.25 E-value=0.52 Score=43.72 Aligned_cols=45 Identities=27% Similarity=0.226 Sum_probs=35.6
Q ss_pred CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh
Q psy1959 160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ 205 (296)
Q Consensus 160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~ 205 (296)
..+++|+|+|++|.+|..+++.+ ...|++|+++.++.++.+.+++
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L-~~~G~~V~~~~r~~~~~~~l~~ 95 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRL-LRHGYSVRIAVDTQEDKEKLRE 95 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHH
Confidence 46789999999999999998887 4579999888777665554443
No 404
>PRK06924 short chain dehydrogenase; Provisional
Probab=93.25 E-value=0.69 Score=39.90 Aligned_cols=40 Identities=23% Similarity=0.324 Sum_probs=31.4
Q ss_pred cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc-chHHHH
Q psy1959 163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE-DKTDLI 203 (296)
Q Consensus 163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~-~~~~~~ 203 (296)
++++|+|++|++|.+.++.+ ...|++|+++++++ ++...+
T Consensus 2 k~vlItGasggiG~~ia~~l-~~~g~~V~~~~r~~~~~~~~~ 42 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQL-LEKGTHVISISRTENKELTKL 42 (251)
T ss_pred cEEEEecCCchHHHHHHHHH-HhcCCEEEEEeCCchHHHHHH
Confidence 47999999999999988877 44799999999876 333333
No 405
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=93.23 E-value=0.94 Score=39.34 Aligned_cols=104 Identities=8% Similarity=0.072 Sum_probs=66.6
Q ss_pred HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhC-CCEEEEEeCCcchHHHHHh----cCCcEEEEcCCchhHHHHHHHHhC
Q psy1959 155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIY-KAKVIGVCNSEDKTDLIRQ----KGAWAALTFTNEKSLVNKVLEVSG 229 (296)
Q Consensus 155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~-g~~Vi~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~i~~~~~ 229 (296)
.+.+..+.++|+=.| .+.|..++.+++... +.+|+.++.+++..+.+++ .|....+.... .+..+.+.++..
T Consensus 62 ~l~~~~~~~~vLEiG--t~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~-gda~~~L~~l~~ 138 (234)
T PLN02781 62 MLVKIMNAKNTLEIG--VFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQ-SDALSALDQLLN 138 (234)
T ss_pred HHHHHhCCCEEEEec--CcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE-ccHHHHHHHHHh
Confidence 455666788999888 456777777773323 4599999999988777754 35433222222 234444444421
Q ss_pred ---CCcccEEEECCCC----ccHHHHHHHhhccCceEEee
Q psy1959 230 ---GKYANVVFEAVGG----EDKTDLIRQKGAWAALTFTN 262 (296)
Q Consensus 230 ---~~g~d~vld~~g~----~~~~~~~~~lg~~~g~~~~~ 262 (296)
...+|++|-.... ..+..+++.+ ++||.+.++
T Consensus 139 ~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll-~~GG~ii~d 177 (234)
T PLN02781 139 NDPKPEFDFAFVDADKPNYVHFHEQLLKLV-KVGGIIAFD 177 (234)
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHHhc-CCCeEEEEE
Confidence 2479988865432 3577788888 889988653
No 406
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=93.20 E-value=0.37 Score=43.41 Aligned_cols=39 Identities=21% Similarity=0.135 Sum_probs=32.1
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchH
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKT 200 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~ 200 (296)
.+.+|+|+|++|.+|...+..+ ...|.+|++++++.++.
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L-~~~g~~V~~~~r~~~~~ 41 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLL-LQRGYTVKATVRDPNDP 41 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHH-HHCCCEEEEEEcCCCch
Confidence 3678999999999999988888 45799999988876543
No 407
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=93.18 E-value=1.1 Score=39.32 Aligned_cols=104 Identities=11% Similarity=0.064 Sum_probs=69.1
Q ss_pred HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHHh----cCCcEEEEcCCchhHHHHHHHHh
Q psy1959 155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIY--KAKVIGVCNSEDKTDLIRQ----KGAWAALTFTNEKSLVNKVLEVS 228 (296)
Q Consensus 155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~--g~~Vi~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~i~~~~ 228 (296)
...+....++||=+| ..+|+.++.+| +.. +.+|+.++.+++..+.+++ .|....+.... .+..+.+.++.
T Consensus 73 ~l~~~~~ak~iLEiG--T~~GySal~la-~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~-G~a~e~L~~l~ 148 (247)
T PLN02589 73 MLLKLINAKNTMEIG--VYTGYSLLATA-LALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFRE-GPALPVLDQMI 148 (247)
T ss_pred HHHHHhCCCEEEEEe--ChhhHHHHHHH-hhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEe-ccHHHHHHHHH
Confidence 344555668899888 67899999998 443 5699999999887776654 45433333322 34445555543
Q ss_pred C----CCcccEEEECCCC----ccHHHHHHHhhccCceEEeec
Q psy1959 229 G----GKYANVVFEAVGG----EDKTDLIRQKGAWAALTFTNE 263 (296)
Q Consensus 229 ~----~~g~d~vld~~g~----~~~~~~~~~lg~~~g~~~~~~ 263 (296)
. ...+|++|--..- ..+..+++++ ++||.+.++.
T Consensus 149 ~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll-~~GGviv~DN 190 (247)
T PLN02589 149 EDGKYHGTFDFIFVDADKDNYINYHKRLIDLV-KVGGVIGYDN 190 (247)
T ss_pred hccccCCcccEEEecCCHHHhHHHHHHHHHhc-CCCeEEEEcC
Confidence 2 1479977765553 3577888888 9999886543
No 408
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=93.16 E-value=0.67 Score=39.66 Aligned_cols=77 Identities=18% Similarity=0.095 Sum_probs=46.0
Q ss_pred EEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc-chHHH----HHhcCCcEE---EEcCCchhHHHHHHHHh-CCCcccE
Q psy1959 165 VLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE-DKTDL----IRQKGAWAA---LTFTNEKSLVNKVLEVS-GGKYANV 235 (296)
Q Consensus 165 vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~-~~~~~----~~~~g~~~~---~~~~~~~~~~~~i~~~~-~~~g~d~ 235 (296)
++|+|++|++|...++.+ ...|++|++++++. ++.+. +++.+.... .+..+..+....+.+.. ....+|.
T Consensus 1 vlItGas~giG~~~a~~l-~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i~~ 79 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRL-AADGFEICVHYHSGRSDAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIAEHGAYYG 79 (239)
T ss_pred CEEeCCCchHHHHHHHHH-HHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 589999999999988887 45799998887643 33322 223333221 23333233333333321 1236899
Q ss_pred EEECCCC
Q psy1959 236 VFEAVGG 242 (296)
Q Consensus 236 vld~~g~ 242 (296)
++.+.|.
T Consensus 80 li~~ag~ 86 (239)
T TIGR01831 80 VVLNAGI 86 (239)
T ss_pred EEECCCC
Confidence 9998873
No 409
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=93.15 E-value=1.5 Score=37.32 Aligned_cols=100 Identities=17% Similarity=0.135 Sum_probs=64.7
Q ss_pred HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCC--CEEEEEeCCcchHHHHHh----cCCcEE-EEcCCchhHHHHHHHH
Q psy1959 155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYK--AKVIGVCNSEDKTDLIRQ----KGAWAA-LTFTNEKSLVNKVLEV 227 (296)
Q Consensus 155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g--~~Vi~~~~~~~~~~~~~~----~g~~~~-~~~~~~~~~~~~i~~~ 227 (296)
....++++++||-.|+ +.|..+..++ +..+ .+|+.++.+++-.+.+++ .+...+ +...+ .... .
T Consensus 70 ~~l~~~~g~~VLdIG~--GsG~~t~~la-~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd---~~~~---~ 140 (212)
T PRK13942 70 ELLDLKEGMKVLEIGT--GSGYHAAVVA-EIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGD---GTLG---Y 140 (212)
T ss_pred HHcCCCCcCEEEEECC--cccHHHHHHH-HhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECC---cccC---C
Confidence 5667889999999984 5577777777 4343 699999999887766654 343322 11111 0000 1
Q ss_pred hCCCcccEEEECCCC-ccHHHHHHHhhccCceEEeecc
Q psy1959 228 SGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFTNEK 264 (296)
Q Consensus 228 ~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~~~~ 264 (296)
.....+|+++-.... ......+++| +.+|.+.+...
T Consensus 141 ~~~~~fD~I~~~~~~~~~~~~l~~~L-kpgG~lvi~~~ 177 (212)
T PRK13942 141 EENAPYDRIYVTAAGPDIPKPLIEQL-KDGGIMVIPVG 177 (212)
T ss_pred CcCCCcCEEEECCCcccchHHHHHhh-CCCcEEEEEEc
Confidence 123468998765554 5667788888 99998866543
No 410
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=93.07 E-value=0.39 Score=42.84 Aligned_cols=74 Identities=15% Similarity=0.126 Sum_probs=43.2
Q ss_pred EEEEEcCCCcHHHHHHHHHHHhCC--CEEEEEeCCc--chHHHHHhcCC---cEEE--EcCCchhHHHHHHHHhCCCccc
Q psy1959 164 TVLVTAAGGGLGLAAVDMATKIYK--AKVIGVCNSE--DKTDLIRQKGA---WAAL--TFTNEKSLVNKVLEVSGGKYAN 234 (296)
Q Consensus 164 ~vlI~Ga~g~vG~aa~~la~~~~g--~~Vi~~~~~~--~~~~~~~~~g~---~~~~--~~~~~~~~~~~i~~~~~~~g~d 234 (296)
+|+|+|++|.+|..+++.+.+ .+ .+|+++++.. .+.+.+..+.. ...+ +..+ .+.+.++..+..+|
T Consensus 1 ~ilItGatG~iG~~l~~~l~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~----~~~~~~~~~~~~~d 75 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILN-EHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGD----RELVSRLFTEHQPD 75 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHH-hCCCCEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcC----HHHHHHHHhhcCCC
Confidence 489999999999999987734 34 6898887532 22222222211 1122 2233 12333333223589
Q ss_pred EEEECCCC
Q psy1959 235 VVFEAVGG 242 (296)
Q Consensus 235 ~vld~~g~ 242 (296)
++|++.+.
T Consensus 76 ~vi~~a~~ 83 (317)
T TIGR01181 76 AVVHFAAE 83 (317)
T ss_pred EEEEcccc
Confidence 99999974
No 411
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=93.01 E-value=1 Score=38.15 Aligned_cols=34 Identities=26% Similarity=0.260 Sum_probs=27.3
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCC
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNS 196 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~ 196 (296)
...+|+|.|+ |++|..+++.+ ...|. +++++|.+
T Consensus 20 ~~~~VlviG~-GglGs~ia~~L-a~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGA-GGLGSPAALYL-AGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECC-CHHHHHHHHHH-HHcCCCeEEEecCC
Confidence 4578999997 99999887777 45687 88888865
No 412
>PLN00016 RNA-binding protein; Provisional
Probab=92.98 E-value=0.73 Score=42.86 Aligned_cols=85 Identities=14% Similarity=0.130 Sum_probs=53.0
Q ss_pred CCcEEEEE----cCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH-----------HhcCCcEEEEcCCchhHHHHHH
Q psy1959 161 EKQTVLVT----AAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI-----------RQKGAWAALTFTNEKSLVNKVL 225 (296)
Q Consensus 161 ~g~~vlI~----Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~-----------~~~g~~~~~~~~~~~~~~~~i~ 225 (296)
...+|||+ |++|-+|..++..+ ...|.+|+++++++.+...+ ...+... +..+- .+ +.
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L-~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~-v~~D~-~d----~~ 123 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKEL-VKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKT-VWGDP-AD----VK 123 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHH-HHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceE-EEecH-HH----HH
Confidence 34689999 99999999988887 44699999999877653221 1223322 21111 22 22
Q ss_pred HHhCCCcccEEEECCCCc--cHHHHHHHh
Q psy1959 226 EVSGGKYANVVFEAVGGE--DKTDLIRQK 252 (296)
Q Consensus 226 ~~~~~~g~d~vld~~g~~--~~~~~~~~l 252 (296)
+.....++|+|+++.+.+ .....++.+
T Consensus 124 ~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa 152 (378)
T PLN00016 124 SKVAGAGFDVVYDNNGKDLDEVEPVADWA 152 (378)
T ss_pred hhhccCCccEEEeCCCCCHHHHHHHHHHH
Confidence 323345899999998753 334445554
No 413
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=92.93 E-value=1.6 Score=41.45 Aligned_cols=95 Identities=14% Similarity=0.153 Sum_probs=60.7
Q ss_pred cEEEEEcCCCcHHHHHHHHHHHhC-CCEEEEEeCCcc--h-HHHHHhcCCcEEEEcCCchhH------------------
Q psy1959 163 QTVLVTAAGGGLGLAAVDMATKIY-KAKVIGVCNSED--K-TDLIRQKGAWAALTFTNEKSL------------------ 220 (296)
Q Consensus 163 ~~vlI~Ga~g~vG~aa~~la~~~~-g~~Vi~~~~~~~--~-~~~~~~~g~~~~~~~~~~~~~------------------ 220 (296)
++|.|+|++|.+|..++++.++.. .++|+++..... . .+.++++.+..+...++ ...
T Consensus 58 KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag~Ni~lL~~q~~~f~p~~v~v~d~-~~~~~l~~~l~~~~~~~~vl~ 136 (454)
T PLN02696 58 KPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAGSNVTLLADQVRKFKPKLVAVRNE-SLVDELKEALADLDDKPEIIP 136 (454)
T ss_pred cEEEEecCCcHhhHHHHHHHHhCccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCH-HHHHHHHHhhcCCCCCcEEEE
Confidence 689999999999999999985432 457777764332 2 23345566665544432 111
Q ss_pred -HHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceE
Q psy1959 221 -VNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALT 259 (296)
Q Consensus 221 -~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~ 259 (296)
.+.+.++.....+|+|++++.+ ..+...+..+ ..|-.+
T Consensus 137 G~egl~~la~~~evDiVV~AIvG~aGL~pTl~AI-kaGK~V 176 (454)
T PLN02696 137 GEEGIVEVARHPEAVTVVTGIVGCAGLKPTVAAI-EAGKDI 176 (454)
T ss_pred CHHHHHHHHcCCCCCEEEEeCccccchHHHHHHH-HCCCcE
Confidence 1233344444468999999988 6777778888 444333
No 414
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=92.81 E-value=0.78 Score=42.87 Aligned_cols=82 Identities=17% Similarity=0.216 Sum_probs=48.5
Q ss_pred CCCcEEEEEcCCCcHHHH--HHHHHHHhCCCEEEEEeCCcc--h--------------HHHHHhcCCcEE-E--EcCCch
Q psy1959 160 KEKQTVLVTAAGGGLGLA--AVDMATKIYKAKVIGVCNSED--K--------------TDLIRQKGAWAA-L--TFTNEK 218 (296)
Q Consensus 160 ~~g~~vlI~Ga~g~vG~a--a~~la~~~~g~~Vi~~~~~~~--~--------------~~~~~~~g~~~~-~--~~~~~~ 218 (296)
..++++||+|+++++|++ .++.+ . .|++++++....+ + .+.+++.|.... + +..+.+
T Consensus 39 ~ggK~aLVTGaSsGIGlA~~IA~al-~-~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E 116 (398)
T PRK13656 39 NGPKKVLVIGASSGYGLASRIAAAF-G-AGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDE 116 (398)
T ss_pred CCCCEEEEECCCchHhHHHHHHHHH-H-cCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHH
Confidence 456899999999999999 34444 3 6998888874221 1 223445564322 2 223323
Q ss_pred hHHHHHHHHhC-CCcccEEEECCCCc
Q psy1959 219 SLVNKVLEVSG-GKYANVVFEAVGGE 243 (296)
Q Consensus 219 ~~~~~i~~~~~-~~g~d~vld~~g~~ 243 (296)
...+.+.++.. -.++|+++++++..
T Consensus 117 ~v~~lie~I~e~~G~IDiLVnSaA~~ 142 (398)
T PRK13656 117 IKQKVIELIKQDLGQVDLVVYSLASP 142 (398)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCccC
Confidence 33333333321 13699999999864
No 415
>PLN02650 dihydroflavonol-4-reductase
Probab=92.77 E-value=0.56 Score=42.98 Aligned_cols=41 Identities=24% Similarity=0.104 Sum_probs=33.3
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHH
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDL 202 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~ 202 (296)
..++|||+|++|-+|...+..+ ...|.+|++++++.++...
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L-~~~G~~V~~~~r~~~~~~~ 44 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRL-LERGYTVRATVRDPANVKK 44 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHH-HHCCCEEEEEEcCcchhHH
Confidence 4568999999999999988888 4579999998887655543
No 416
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=92.75 E-value=0.34 Score=41.41 Aligned_cols=100 Identities=14% Similarity=0.087 Sum_probs=62.5
Q ss_pred HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC--EEEEEeCCcchHHHHHh----cCCcEE-EEcCCchhHHHHHHHH
Q psy1959 155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA--KVIGVCNSEDKTDLIRQ----KGAWAA-LTFTNEKSLVNKVLEV 227 (296)
Q Consensus 155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~--~Vi~~~~~~~~~~~~~~----~g~~~~-~~~~~~~~~~~~i~~~ 227 (296)
+..++++|++||-.|+ |.|+.++-++ ++.|. +|+.++..++-.+.+++ ++...+ +...+ . .. ..
T Consensus 66 ~~L~l~pg~~VLeIGt--GsGY~aAlla-~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gd-g--~~---g~ 136 (209)
T PF01135_consen 66 EALDLKPGDRVLEIGT--GSGYQAALLA-HLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGD-G--SE---GW 136 (209)
T ss_dssp HHTTC-TT-EEEEES---TTSHHHHHHH-HHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES--G--GG---TT
T ss_pred HHHhcCCCCEEEEecC--CCcHHHHHHH-HhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcc-h--hh---cc
Confidence 6677999999999984 5578888888 44443 79999988775555543 455422 22222 1 00 11
Q ss_pred hCCCcccEEEECCCCc-cHHHHHHHhhccCceEEeecc
Q psy1959 228 SGGKYANVVFEAVGGE-DKTDLIRQKGAWAALTFTNEK 264 (296)
Q Consensus 228 ~~~~g~d~vld~~g~~-~~~~~~~~lg~~~g~~~~~~~ 264 (296)
.....+|.++-+.+-+ .-...+++| +.+|+..++..
T Consensus 137 ~~~apfD~I~v~~a~~~ip~~l~~qL-~~gGrLV~pi~ 173 (209)
T PF01135_consen 137 PEEAPFDRIIVTAAVPEIPEALLEQL-KPGGRLVAPIG 173 (209)
T ss_dssp GGG-SEEEEEESSBBSS--HHHHHTE-EEEEEEEEEES
T ss_pred ccCCCcCEEEEeeccchHHHHHHHhc-CCCcEEEEEEc
Confidence 1123699999988874 556788888 99999877655
No 417
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=92.72 E-value=0.48 Score=45.58 Aligned_cols=77 Identities=19% Similarity=0.234 Sum_probs=53.1
Q ss_pred CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc---------------------chHHHHHhcCCcEEEEcCCch
Q psy1959 160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE---------------------DKTDLIRQKGAWAALTFTNEK 218 (296)
Q Consensus 160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~---------------------~~~~~~~~~g~~~~~~~~~~~ 218 (296)
..+++|+|.|+ |+.|+.++..+ +..|.+|++.+..+ ...++++++|++..++.....
T Consensus 139 ~~~~~V~IIG~-GpaGl~aA~~l-~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~ 216 (467)
T TIGR01318 139 PTGKRVAVIGA-GPAGLACADIL-ARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGR 216 (467)
T ss_pred CCCCeEEEECC-CHHHHHHHHHH-HHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCC
Confidence 36889999997 99999999998 45799999888654 245667788876554432101
Q ss_pred hHHHHHHHHhCCCcccEEEECCCC
Q psy1959 219 SLVNKVLEVSGGKYANVVFEAVGG 242 (296)
Q Consensus 219 ~~~~~i~~~~~~~g~d~vld~~g~ 242 (296)
+. .+.+.. .++|.+|.++|.
T Consensus 217 ~~--~~~~~~--~~~D~vilAtGa 236 (467)
T TIGR01318 217 DI--SLDDLL--EDYDAVFLGVGT 236 (467)
T ss_pred cc--CHHHHH--hcCCEEEEEeCC
Confidence 11 111222 268999999997
No 418
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=92.71 E-value=1.3 Score=36.44 Aligned_cols=52 Identities=12% Similarity=0.012 Sum_probs=35.8
Q ss_pred ccHHHHHHHHHHHHcCCCCCcEEEEEcCCCc-HHHHHHHHHHHhCCCEEEEEeCC
Q psy1959 143 ADSYSTAQIVFSRHAKLKEKQTVLVTAAGGG-LGLAAVDMATKIYKAKVIGVCNS 196 (296)
Q Consensus 143 ~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~-vG~aa~~la~~~~g~~Vi~~~~~ 196 (296)
|+....+...+.+...--.+.+++|.|+ |. +|..++..+ ...|++|+++.++
T Consensus 25 p~~~~a~v~l~~~~~~~l~gk~vlViG~-G~~~G~~~a~~L-~~~g~~V~v~~r~ 77 (168)
T cd01080 25 PCTPAGILELLKRYGIDLAGKKVVVVGR-SNIVGKPLAALL-LNRNATVTVCHSK 77 (168)
T ss_pred CChHHHHHHHHHHcCCCCCCCEEEEECC-cHHHHHHHHHHH-hhCCCEEEEEECC
Confidence 3334444445544443458999999998 65 699788888 4478898888865
No 419
>KOG1502|consensus
Probab=92.67 E-value=0.53 Score=42.81 Aligned_cols=77 Identities=18% Similarity=0.114 Sum_probs=51.9
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchH---HHHHhcC-CcE---EEEcCCchhHHHHHHHHhCCCcc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKT---DLIRQKG-AWA---ALTFTNEKSLVNKVLEVSGGKYA 233 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~---~~~~~~g-~~~---~~~~~~~~~~~~~i~~~~~~~g~ 233 (296)
.+..|.|+||+|=+|.+.+..+ ...|++|..++|+.++. +.++++. +.. .+.. + ..-...+.... .|.
T Consensus 5 ~~~~VcVTGAsGfIgswivk~L-L~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~a-D-L~d~~sf~~ai--~gc 79 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLL-LSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKA-D-LLDEGSFDKAI--DGC 79 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHH-HhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEec-c-ccccchHHHHH--hCC
Confidence 5789999999999999999999 66899999999988863 3466653 322 1211 1 11112233332 368
Q ss_pred cEEEECCCC
Q psy1959 234 NVVFEAVGG 242 (296)
Q Consensus 234 d~vld~~g~ 242 (296)
|.||.+...
T Consensus 80 dgVfH~Asp 88 (327)
T KOG1502|consen 80 DGVFHTASP 88 (327)
T ss_pred CEEEEeCcc
Confidence 899987663
No 420
>PLN00198 anthocyanidin reductase; Provisional
Probab=92.64 E-value=0.67 Score=42.17 Aligned_cols=39 Identities=15% Similarity=0.069 Sum_probs=31.8
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchH
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKT 200 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~ 200 (296)
.+.+|+|+|++|.+|...+..+ ...|.+|++++++.+..
T Consensus 8 ~~~~vlItG~~GfIG~~l~~~L-~~~g~~V~~~~r~~~~~ 46 (338)
T PLN00198 8 GKKTACVIGGTGFLASLLIKLL-LQKGYAVNTTVRDPENQ 46 (338)
T ss_pred CCCeEEEECCchHHHHHHHHHH-HHCCCEEEEEECCCCCH
Confidence 4788999999999999988888 44799998887765543
No 421
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.61 E-value=0.73 Score=43.83 Aligned_cols=72 Identities=15% Similarity=0.085 Sum_probs=47.8
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch----HHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEE
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK----TDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVV 236 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~v 236 (296)
.+++++|+|+ |++|.+++.++ +..|++|++.+..... .+.+.+.|......... .+. + ..++|++
T Consensus 4 ~~k~v~v~G~-g~~G~s~a~~l-~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~-~~~---~-----~~~~d~v 72 (447)
T PRK02472 4 QNKKVLVLGL-AKSGYAAAKLL-HKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHP-LEL---L-----DEDFDLM 72 (447)
T ss_pred CCCEEEEEee-CHHHHHHHHHH-HHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCC-HHH---h-----cCcCCEE
Confidence 4678999998 67999999999 5689999999865422 24455556543322222 211 1 1258999
Q ss_pred EECCCCc
Q psy1959 237 FEAVGGE 243 (296)
Q Consensus 237 ld~~g~~ 243 (296)
+.+.|-+
T Consensus 73 V~s~gi~ 79 (447)
T PRK02472 73 VKNPGIP 79 (447)
T ss_pred EECCCCC
Confidence 9988863
No 422
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=92.57 E-value=0.71 Score=53.07 Aligned_cols=38 Identities=24% Similarity=0.227 Sum_probs=30.9
Q ss_pred CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCC
Q psy1959 159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNS 196 (296)
Q Consensus 159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~ 196 (296)
+.+++.++|+|+++++|..++..+.+..|++|+.+.++
T Consensus 1994 l~~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs 2031 (2582)
T TIGR02813 1994 LNSDDVFLVTGGAKGVTFECALELAKQCQAHFILAGRS 2031 (2582)
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 45789999999999999886655535568999999887
No 423
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.51 E-value=0.9 Score=43.73 Aligned_cols=70 Identities=23% Similarity=0.195 Sum_probs=49.3
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc-----hHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccE
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED-----KTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANV 235 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~ 235 (296)
.+++|+|+|+ |.+|+.++.++ +..|.+|++++..+. ..+.+++.|+........ . ....+|+
T Consensus 15 ~~~~v~viG~-G~~G~~~A~~L-~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~-~----------~~~~~D~ 81 (480)
T PRK01438 15 QGLRVVVAGL-GVSGFAAADAL-LELGARVTVVDDGDDERHRALAAILEALGATVRLGPGP-T----------LPEDTDL 81 (480)
T ss_pred CCCEEEEECC-CHHHHHHHHHH-HHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCc-c----------ccCCCCE
Confidence 4679999997 99999999988 568999999986543 234466667654332221 1 0236899
Q ss_pred EEECCCCc
Q psy1959 236 VFEAVGGE 243 (296)
Q Consensus 236 vld~~g~~ 243 (296)
|+-+.|-.
T Consensus 82 Vv~s~Gi~ 89 (480)
T PRK01438 82 VVTSPGWR 89 (480)
T ss_pred EEECCCcC
Confidence 99999873
No 424
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=92.50 E-value=0.8 Score=38.79 Aligned_cols=100 Identities=15% Similarity=0.110 Sum_probs=64.2
Q ss_pred HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhC-CCEEEEEeCCcchHHHHHh----cCCc---EEEEcCCchhHHHHHHH
Q psy1959 155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIY-KAKVIGVCNSEDKTDLIRQ----KGAW---AALTFTNEKSLVNKVLE 226 (296)
Q Consensus 155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~-g~~Vi~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~i~~ 226 (296)
+...++++++||=.|+ |.|..+..+++... +.+|+.++.+++-.+.+++ .+.. .++..+- .+.+
T Consensus 66 ~~l~~~~~~~VLDiG~--GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~----~~~~-- 137 (205)
T PRK13944 66 ELIEPRPGMKILEVGT--GSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDG----KRGL-- 137 (205)
T ss_pred HhcCCCCCCEEEEECc--CccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCc----ccCC--
Confidence 5667889999998885 45777777774321 3699999999886665553 3432 1222211 1111
Q ss_pred HhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEeecc
Q psy1959 227 VSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFTNEK 264 (296)
Q Consensus 227 ~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~~~~ 264 (296)
.....+|+++-+... ......++.| +.+|.+.++..
T Consensus 138 -~~~~~fD~Ii~~~~~~~~~~~l~~~L-~~gG~lvi~~~ 174 (205)
T PRK13944 138 -EKHAPFDAIIVTAAASTIPSALVRQL-KDGGVLVIPVE 174 (205)
T ss_pred -ccCCCccEEEEccCcchhhHHHHHhc-CcCcEEEEEEc
Confidence 112479998877665 4556777888 89998866543
No 425
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=92.48 E-value=0.72 Score=41.84 Aligned_cols=74 Identities=19% Similarity=0.136 Sum_probs=43.9
Q ss_pred EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch-H---HHHHhcC-Cc-EE--EEcCCchhHHHHHHHHhCCCcccE
Q psy1959 164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK-T---DLIRQKG-AW-AA--LTFTNEKSLVNKVLEVSGGKYANV 235 (296)
Q Consensus 164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~-~---~~~~~~g-~~-~~--~~~~~~~~~~~~i~~~~~~~g~d~ 235 (296)
+++|+|++|.+|...+..+ ...|.+|+++++..+. . ..+.+.+ .. .. .+..+ . +.+.++....++|+
T Consensus 2 ~vlVtGatG~iG~~l~~~L-~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~---~~~~~~~~~~~~d~ 76 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQL-LQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN-E---ALLTEILHDHAIDT 76 (338)
T ss_pred eEEEECCCChHHHHHHHHH-HHCCCeEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCC-H---HHHHHHHhcCCCCE
Confidence 5899999999999888877 4469999988753222 1 1222222 11 11 22333 1 22333332347999
Q ss_pred EEECCCC
Q psy1959 236 VFEAVGG 242 (296)
Q Consensus 236 vld~~g~ 242 (296)
++++.+.
T Consensus 77 vvh~a~~ 83 (338)
T PRK10675 77 VIHFAGL 83 (338)
T ss_pred EEECCcc
Confidence 9998764
No 426
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=92.46 E-value=0.89 Score=36.23 Aligned_cols=73 Identities=19% Similarity=0.216 Sum_probs=48.2
Q ss_pred CCCcEEEEEcCCCcHHHHHHHHHHHhCC-CEEEEEeCCcchHHHHH-hcCCcE-EEEcCCchhHHHHHHHHhCCCcccEE
Q psy1959 160 KEKQTVLVTAAGGGLGLAAVDMATKIYK-AKVIGVCNSEDKTDLIR-QKGAWA-ALTFTNEKSLVNKVLEVSGGKYANVV 236 (296)
Q Consensus 160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g-~~Vi~~~~~~~~~~~~~-~~g~~~-~~~~~~~~~~~~~i~~~~~~~g~d~v 236 (296)
.++.+++|.|+ |.+|...++.+. ..| .+|++.+++.++.+.+. +++... ..... +..+. -+++|++
T Consensus 17 ~~~~~i~iiG~-G~~g~~~a~~l~-~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~------~~~~Dvv 85 (155)
T cd01065 17 LKGKKVLILGA-GGAARAVAYALA-ELGAAKIVIVNRTLEKAKALAERFGELGIAIAYL---DLEEL------LAEADLI 85 (155)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHH-HCCCCEEEEEcCCHHHHHHHHHHHhhcccceeec---chhhc------cccCCEE
Confidence 45789999997 999999888873 454 68999999887766543 444321 01111 11111 2478999
Q ss_pred EECCCCc
Q psy1959 237 FEAVGGE 243 (296)
Q Consensus 237 ld~~g~~ 243 (296)
+.|+...
T Consensus 86 i~~~~~~ 92 (155)
T cd01065 86 INTTPVG 92 (155)
T ss_pred EeCcCCC
Confidence 9999874
No 427
>PLN02476 O-methyltransferase
Probab=92.44 E-value=1.4 Score=39.37 Aligned_cols=106 Identities=6% Similarity=0.095 Sum_probs=69.0
Q ss_pred HHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHHh----cCCcEEEEcCCchhHHHHHHH
Q psy1959 153 FSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIY--KAKVIGVCNSEDKTDLIRQ----KGAWAALTFTNEKSLVNKVLE 226 (296)
Q Consensus 153 l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~--g~~Vi~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~i~~ 226 (296)
+..+.+..+.++||=+| ..+|..++.+| +.. +.+|+.++.+++..+.+++ .|...-+.... .+..+.+.+
T Consensus 110 L~~L~~~~~ak~VLEIG--T~tGySal~lA-~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~-GdA~e~L~~ 185 (278)
T PLN02476 110 LAMLVQILGAERCIEVG--VYTGYSSLAVA-LVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKH-GLAAESLKS 185 (278)
T ss_pred HHHHHHhcCCCeEEEec--CCCCHHHHHHH-HhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE-cCHHHHHHH
Confidence 33556677889999888 56688888888 443 4589999999988777754 46543232222 233444444
Q ss_pred Hh---CCCcccEEEECCCC----ccHHHHHHHhhccCceEEeec
Q psy1959 227 VS---GGKYANVVFEAVGG----EDKTDLIRQKGAWAALTFTNE 263 (296)
Q Consensus 227 ~~---~~~g~d~vld~~g~----~~~~~~~~~lg~~~g~~~~~~ 263 (296)
+. ....+|++|--... +.++.+++.+ +++|.+.++.
T Consensus 186 l~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL-~~GGvIV~DN 228 (278)
T PLN02476 186 MIQNGEGSSYDFAFVDADKRMYQDYFELLLQLV-RVGGVIVMDN 228 (278)
T ss_pred HHhcccCCCCCEEEECCCHHHHHHHHHHHHHhc-CCCcEEEEec
Confidence 32 12468977765543 3577888889 9999886553
No 428
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=92.44 E-value=0.88 Score=36.96 Aligned_cols=79 Identities=14% Similarity=0.140 Sum_probs=52.1
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECC
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAV 240 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~ 240 (296)
.|.+|+|.|+ |.+|..-++.+ ...|++|++++ ++..+.+++++... .... .+.+ .+-.++|+|+-+.
T Consensus 12 ~~~~vlVvGG-G~va~rka~~L-l~~ga~V~VIs--p~~~~~l~~l~~i~-~~~~---~~~~-----~dl~~a~lViaaT 78 (157)
T PRK06719 12 HNKVVVIIGG-GKIAYRKASGL-KDTGAFVTVVS--PEICKEMKELPYIT-WKQK---TFSN-----DDIKDAHLIYAAT 78 (157)
T ss_pred CCCEEEEECC-CHHHHHHHHHH-HhCCCEEEEEc--CccCHHHHhccCcE-EEec---ccCh-----hcCCCceEEEECC
Confidence 6789999998 99998877766 44799998884 44445555554211 1111 1111 1124789999999
Q ss_pred CCccHHHHHHHh
Q psy1959 241 GGEDKTDLIRQK 252 (296)
Q Consensus 241 g~~~~~~~~~~l 252 (296)
+++..+..+...
T Consensus 79 ~d~e~N~~i~~~ 90 (157)
T PRK06719 79 NQHAVNMMVKQA 90 (157)
T ss_pred CCHHHHHHHHHH
Confidence 997777766666
No 429
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=92.43 E-value=0.58 Score=41.89 Aligned_cols=74 Identities=15% Similarity=0.146 Sum_probs=43.3
Q ss_pred EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch-HHHHHhc---CCcEEE--EcCCchhHHHHHHHHhCCCcccEEE
Q psy1959 164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK-TDLIRQK---GAWAAL--TFTNEKSLVNKVLEVSGGKYANVVF 237 (296)
Q Consensus 164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~-~~~~~~~---g~~~~~--~~~~~~~~~~~i~~~~~~~g~d~vl 237 (296)
+|+|+|++|.+|..+++.+ ...|.+|+++++...+ ...+... +....+ +..+...+ .+.....++|+++
T Consensus 1 kvlV~GatG~iG~~l~~~l-~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~----~~~~~~~~~d~vv 75 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQL-LESGHEVVVLDNLSNGSPEALKRGERITRVTFVEGDLRDRELL----DRLFEEHKIDAVI 75 (328)
T ss_pred CEEEeCCCCHHHHHHHHHH-HhCCCeEEEEeCCCccchhhhhhhccccceEEEECCCCCHHHH----HHHHHhCCCcEEE
Confidence 4799999999999999888 4468899887653322 2222211 111112 22231222 2222224799999
Q ss_pred ECCCC
Q psy1959 238 EAVGG 242 (296)
Q Consensus 238 d~~g~ 242 (296)
++.|.
T Consensus 76 ~~ag~ 80 (328)
T TIGR01179 76 HFAGL 80 (328)
T ss_pred ECccc
Confidence 99874
No 430
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=92.42 E-value=2.5 Score=31.84 Aligned_cols=101 Identities=15% Similarity=0.144 Sum_probs=64.0
Q ss_pred HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcEE-EEcCCchhHHHHHHHHhC
Q psy1959 155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWAA-LTFTNEKSLVNKVLEVSG 229 (296)
Q Consensus 155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~~-~~~~~~~~~~~~i~~~~~ 229 (296)
....+.++++++-.|+ |. |..+..++++..+.+|+.++.++...+.+++ .+...+ +...+ ........
T Consensus 13 ~~~~~~~~~~vldlG~-G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~~~~~-- 85 (124)
T TIGR02469 13 SKLRLRPGDVLWDIGA-GS-GSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGD---APEALEDS-- 85 (124)
T ss_pred HHcCCCCCCEEEEeCC-CC-CHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEecc---ccccChhh--
Confidence 4456677889999886 55 8889999954335799999999888777643 343322 11111 11101111
Q ss_pred CCcccEEEECCCC----ccHHHHHHHhhccCceEEeec
Q psy1959 230 GKYANVVFEAVGG----EDKTDLIRQKGAWAALTFTNE 263 (296)
Q Consensus 230 ~~g~d~vld~~g~----~~~~~~~~~lg~~~g~~~~~~ 263 (296)
...+|+++..... +.+..+.+.| +++|.+.++.
T Consensus 86 ~~~~D~v~~~~~~~~~~~~l~~~~~~L-k~gG~li~~~ 122 (124)
T TIGR02469 86 LPEPDRVFIGGSGGLLQEILEAIWRRL-RPGGRIVLNA 122 (124)
T ss_pred cCCCCEEEECCcchhHHHHHHHHHHHc-CCCCEEEEEe
Confidence 2379999876543 2577788888 8888886543
No 431
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=92.42 E-value=0.32 Score=41.40 Aligned_cols=104 Identities=13% Similarity=0.136 Sum_probs=66.1
Q ss_pred HcCCCCCcEEEEEcCCCcHHHHHHHHHHHhC-CCEEEEEeCCcchHHHHHh----cCCcEEEEcCCchhHHHHHHHHhC-
Q psy1959 156 HAKLKEKQTVLVTAAGGGLGLAAVDMATKIY-KAKVIGVCNSEDKTDLIRQ----KGAWAALTFTNEKSLVNKVLEVSG- 229 (296)
Q Consensus 156 ~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~-g~~Vi~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~i~~~~~- 229 (296)
..+....++||-+| ..+|+.++.+|+... +.+|+.++.+++..+.+++ .|...-+.... .+..+.+.++..
T Consensus 40 l~~~~~~k~vLEIG--t~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~-gda~~~l~~l~~~ 116 (205)
T PF01596_consen 40 LVRLTRPKRVLEIG--TFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIE-GDALEVLPELAND 116 (205)
T ss_dssp HHHHHT-SEEEEES--TTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEE-S-HHHHHHHHHHT
T ss_pred HHHhcCCceEEEec--cccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEE-eccHhhHHHHHhc
Confidence 34445668999998 677899999994322 5799999999998887754 35432222221 334444554432
Q ss_pred --CCcccEEEECCCC----ccHHHHHHHhhccCceEEeec
Q psy1959 230 --GKYANVVFEAVGG----EDKTDLIRQKGAWAALTFTNE 263 (296)
Q Consensus 230 --~~g~d~vld~~g~----~~~~~~~~~lg~~~g~~~~~~ 263 (296)
...+|+||--..- ..+..+++++ +.+|.+.++.
T Consensus 117 ~~~~~fD~VFiDa~K~~y~~y~~~~~~ll-~~ggvii~DN 155 (205)
T PF01596_consen 117 GEEGQFDFVFIDADKRNYLEYFEKALPLL-RPGGVIIADN 155 (205)
T ss_dssp TTTTSEEEEEEESTGGGHHHHHHHHHHHE-EEEEEEEEET
T ss_pred cCCCceeEEEEcccccchhhHHHHHhhhc-cCCeEEEEcc
Confidence 2369977654443 2577788888 8888886654
No 432
>PLN02583 cinnamoyl-CoA reductase
Probab=92.40 E-value=1.2 Score=39.90 Aligned_cols=36 Identities=19% Similarity=0.135 Sum_probs=30.5
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE 197 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~ 197 (296)
++++|+|+|++|.+|..+++.+ ...|.+|+++.++.
T Consensus 5 ~~k~vlVTGatG~IG~~lv~~L-l~~G~~V~~~~R~~ 40 (297)
T PLN02583 5 SSKSVCVMDASGYVGFWLVKRL-LSRGYTVHAAVQKN 40 (297)
T ss_pred CCCEEEEECCCCHHHHHHHHHH-HhCCCEEEEEEcCc
Confidence 5678999999999999988887 45799999988753
No 433
>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A.
Probab=92.35 E-value=0.05 Score=42.02 Aligned_cols=44 Identities=20% Similarity=0.235 Sum_probs=30.0
Q ss_pred cCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCC--Cc-cHHHHHHHhhccCceE
Q psy1959 206 KGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVG--GE-DKTDLIRQKGAWAALT 259 (296)
Q Consensus 206 ~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g--~~-~~~~~~~~lg~~~g~~ 259 (296)
+|++.+++|+. .++ ....++|+|||++| ++ .+..+++++ ++|++
T Consensus 1 LGAd~vidy~~-~~~-------~~~~~~D~ViD~~g~~~~~~~~~~~~~l--~~G~~ 47 (127)
T PF13602_consen 1 LGADEVIDYRD-TDF-------AGPGGVDVVIDTVGQTGESLLDASRKLL--PGGRV 47 (127)
T ss_dssp CT-SEEEETTC-SHH-------HTTS-EEEEEESS-CCHHHCGGGCCCTE--EEEEE
T ss_pred CCcCEEecCCC-ccc-------cCCCCceEEEECCCCccHHHHHHHHHHC--CCCEE
Confidence 58999999986 555 44679999999999 54 346666777 55555
No 434
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=92.33 E-value=0.75 Score=42.22 Aligned_cols=49 Identities=22% Similarity=0.229 Sum_probs=37.6
Q ss_pred HHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc
Q psy1959 148 TAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED 198 (296)
Q Consensus 148 ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~ 198 (296)
|||.-+.....+ +.++|+|+|++|-+|..++..+ ...|.+|+++++...
T Consensus 2 ~~~~~~~~~~~~-~~~~vlVtGatGfiG~~lv~~L-~~~g~~V~~~d~~~~ 50 (348)
T PRK15181 2 TAYEELRTKLVL-APKRWLITGVAGFIGSGLLEEL-LFLNQTVIGLDNFST 50 (348)
T ss_pred chhhhhhhcccc-cCCEEEEECCccHHHHHHHHHH-HHCCCEEEEEeCCCC
Confidence 567666444444 3478999999999999988888 456899999987543
No 435
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=92.33 E-value=1.5 Score=33.93 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=25.6
Q ss_pred EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC
Q psy1959 164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN 195 (296)
Q Consensus 164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~ 195 (296)
+|+|+|++|-+|+.+++.+.+..+.++.....
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~ 33 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVD 33 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEE
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEe
Confidence 68999999999999999996556777555543
No 436
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.26 E-value=1.4 Score=33.25 Aligned_cols=73 Identities=12% Similarity=0.141 Sum_probs=52.3
Q ss_pred EEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCc
Q psy1959 165 VLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE 243 (296)
Q Consensus 165 vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~ 243 (296)
++|.|. |.+|+..++.++ ..+.+|++++.++++.+.+++.|.. ++..+. .-.+.++++ +-..++.++-+.+++
T Consensus 1 vvI~G~-g~~~~~i~~~L~-~~~~~vvvid~d~~~~~~~~~~~~~-~i~gd~--~~~~~l~~a-~i~~a~~vv~~~~~d 73 (116)
T PF02254_consen 1 VVIIGY-GRIGREIAEQLK-EGGIDVVVIDRDPERVEELREEGVE-VIYGDA--TDPEVLERA-GIEKADAVVILTDDD 73 (116)
T ss_dssp EEEES--SHHHHHHHHHHH-HTTSEEEEEESSHHHHHHHHHTTSE-EEES-T--TSHHHHHHT-TGGCESEEEEESSSH
T ss_pred eEEEcC-CHHHHHHHHHHH-hCCCEEEEEECCcHHHHHHHhcccc-cccccc--hhhhHHhhc-CccccCEEEEccCCH
Confidence 578897 999999999994 4667999999999999999998854 343322 112233333 345789999998874
No 437
>KOG1207|consensus
Probab=92.17 E-value=0.77 Score=37.96 Aligned_cols=81 Identities=19% Similarity=0.063 Sum_probs=53.3
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE--EEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA--LTFTNEKSLVNKVLEVSGGKYANVVFE 238 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~i~~~~~~~g~d~vld 238 (296)
.|..|+++|+..++|...++-+ ...|++|+++.+.++.+..+-..-.... +..+- ..|....+.+..-..+|..++
T Consensus 6 aG~~vlvTgagaGIG~~~v~~L-a~aGA~ViAvaR~~a~L~sLV~e~p~~I~Pi~~Dl-s~wea~~~~l~~v~pidgLVN 83 (245)
T KOG1207|consen 6 AGVIVLVTGAGAGIGKEIVLSL-AKAGAQVIAVARNEANLLSLVKETPSLIIPIVGDL-SAWEALFKLLVPVFPIDGLVN 83 (245)
T ss_pred cceEEEeecccccccHHHHHHH-HhcCCEEEEEecCHHHHHHHHhhCCcceeeeEecc-cHHHHHHHhhcccCchhhhhc
Confidence 5788999999999999977776 4479999999999998877755433221 21111 334333333333335687778
Q ss_pred CCCCc
Q psy1959 239 AVGGE 243 (296)
Q Consensus 239 ~~g~~ 243 (296)
+.|-.
T Consensus 84 NAgvA 88 (245)
T KOG1207|consen 84 NAGVA 88 (245)
T ss_pred cchhh
Confidence 77743
No 438
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=92.14 E-value=3.5 Score=35.03 Aligned_cols=81 Identities=17% Similarity=0.187 Sum_probs=50.8
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc-hHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEEC
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED-KTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEA 239 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~ 239 (296)
.|.+|+|.|+ |.+|..-++.+ ...|++|++++.... ....+.+.|--..+. .+ .. ... -.++++|+-+
T Consensus 8 ~gk~vlVvGg-G~va~rk~~~L-l~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~-~~-~~-~~d------l~~~~lVi~a 76 (205)
T TIGR01470 8 EGRAVLVVGG-GDVALRKARLL-LKAGAQLRVIAEELESELTLLAEQGGITWLA-RC-FD-ADI------LEGAFLVIAA 76 (205)
T ss_pred CCCeEEEECc-CHHHHHHHHHH-HHCCCEEEEEcCCCCHHHHHHHHcCCEEEEe-CC-CC-HHH------hCCcEEEEEC
Confidence 4789999997 99999988888 458999998886443 333344444212111 11 11 111 1378999999
Q ss_pred CCCccHHHHHHHh
Q psy1959 240 VGGEDKTDLIRQK 252 (296)
Q Consensus 240 ~g~~~~~~~~~~l 252 (296)
.+.+..+..+...
T Consensus 77 t~d~~ln~~i~~~ 89 (205)
T TIGR01470 77 TDDEELNRRVAHA 89 (205)
T ss_pred CCCHHHHHHHHHH
Confidence 9986555444433
No 439
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=92.06 E-value=0.49 Score=42.60 Aligned_cols=89 Identities=19% Similarity=0.184 Sum_probs=60.6
Q ss_pred CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcE-EEEcCCchhHHHHHHHHhCCCcccEEEECC
Q psy1959 162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWA-ALTFTNEKSLVNKVLEVSGGKYANVVFEAV 240 (296)
Q Consensus 162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~i~~~~~~~g~d~vld~~ 240 (296)
...|.|+|+ |.+|.-++.+| .-+|++|...+.+.+|+..+.+..... ...+++... +.+.. .++|++|.++
T Consensus 168 ~~kv~iiGG-GvvgtnaAkiA-~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~----iee~v--~~aDlvIgaV 239 (371)
T COG0686 168 PAKVVVLGG-GVVGTNAAKIA-IGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSN----IEEAV--KKADLVIGAV 239 (371)
T ss_pred CccEEEECC-ccccchHHHHH-hccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHH----HHHHh--hhccEEEEEE
Confidence 345666786 99999999999 778999999999999999998754433 344444233 33332 3688888865
Q ss_pred ---CCc----cHHHHHHHhhccCceE
Q psy1959 241 ---GGE----DKTDLIRQKGAWAALT 259 (296)
Q Consensus 241 ---g~~----~~~~~~~~lg~~~g~~ 259 (296)
|.. ..++.++.| .++..+
T Consensus 240 LIpgakaPkLvt~e~vk~M-kpGsVi 264 (371)
T COG0686 240 LIPGAKAPKLVTREMVKQM-KPGSVI 264 (371)
T ss_pred EecCCCCceehhHHHHHhc-CCCcEE
Confidence 221 355667777 555443
No 440
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=92.04 E-value=0.82 Score=38.80 Aligned_cols=81 Identities=10% Similarity=0.093 Sum_probs=50.0
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc-hHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEEC
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED-KTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEA 239 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~ 239 (296)
.|.+|+|.|+ |.+|...++.+ ...|++|+++..... .+..+.+.+.- .+.... +.+. .-.++|+|+-+
T Consensus 9 ~~k~vLVIGg-G~va~~ka~~L-l~~ga~V~VIs~~~~~~l~~l~~~~~i-~~~~~~---~~~~-----~l~~adlViaa 77 (202)
T PRK06718 9 SNKRVVIVGG-GKVAGRRAITL-LKYGAHIVVISPELTENLVKLVEEGKI-RWKQKE---FEPS-----DIVDAFLVIAA 77 (202)
T ss_pred CCCEEEEECC-CHHHHHHHHHH-HHCCCeEEEEcCCCCHHHHHHHhCCCE-EEEecC---CChh-----hcCCceEEEEc
Confidence 5789999998 99999887766 347899998875322 22222222221 111111 1110 12478999999
Q ss_pred CCCccHHHHHHHh
Q psy1959 240 VGGEDKTDLIRQK 252 (296)
Q Consensus 240 ~g~~~~~~~~~~l 252 (296)
.+++..+..+...
T Consensus 78 T~d~elN~~i~~~ 90 (202)
T PRK06718 78 TNDPRVNEQVKED 90 (202)
T ss_pred CCCHHHHHHHHHH
Confidence 9997777766655
No 441
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=92.01 E-value=0.78 Score=43.17 Aligned_cols=75 Identities=21% Similarity=0.257 Sum_probs=50.4
Q ss_pred CCcEEEEEcC----------------CCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHH
Q psy1959 161 EKQTVLVTAA----------------GGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKV 224 (296)
Q Consensus 161 ~g~~vlI~Ga----------------~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i 224 (296)
.|.+++|+|+ +|.+|.+.++.+ ...|++|++++++.+ .+. ..+. ..++..+..+..+.+
T Consensus 187 ~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l-~~~Ga~V~~v~~~~~-~~~--~~~~-~~~dv~~~~~~~~~v 261 (399)
T PRK05579 187 AGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAA-ARRGADVTLVSGPVN-LPT--PAGV-KRIDVESAQEMLDAV 261 (399)
T ss_pred CCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHH-HHCCCEEEEeCCCcc-ccC--CCCc-EEEccCCHHHHHHHH
Confidence 6899999998 666999999999 568999999987652 211 1122 233443334455555
Q ss_pred HHHhCCCcccEEEECCCC
Q psy1959 225 LEVSGGKYANVVFEAVGG 242 (296)
Q Consensus 225 ~~~~~~~g~d~vld~~g~ 242 (296)
.+.. ..+|+++.+.|-
T Consensus 262 ~~~~--~~~DilI~~Aav 277 (399)
T PRK05579 262 LAAL--PQADIFIMAAAV 277 (399)
T ss_pred HHhc--CCCCEEEEcccc
Confidence 4443 258999999885
No 442
>PRK06849 hypothetical protein; Provisional
Probab=92.01 E-value=1.1 Score=41.98 Aligned_cols=80 Identities=14% Similarity=0.121 Sum_probs=55.2
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEc---C-CchhHHHHHHHHhCCCcccEE
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTF---T-NEKSLVNKVLEVSGGKYANVV 236 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~---~-~~~~~~~~i~~~~~~~g~d~v 236 (296)
...+|||+|+..+.|+..++.+ +..|.+|++++..+...... ...++..+.. . +...+.+.+.++....++|++
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l-~~~G~~Vi~~d~~~~~~~~~-s~~~d~~~~~p~p~~d~~~~~~~L~~i~~~~~id~v 80 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLF-HNAGHTVILADSLKYPLSRF-SRAVDGFYTIPSPRWDPDAYIQALLSIVQRENIDLL 80 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCchHHHHH-HHhhhheEEeCCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 4588999999778899999999 44799999999876543321 1223332221 1 224567777777666789999
Q ss_pred EECCCC
Q psy1959 237 FEAVGG 242 (296)
Q Consensus 237 ld~~g~ 242 (296)
+-+...
T Consensus 81 IP~~e~ 86 (389)
T PRK06849 81 IPTCEE 86 (389)
T ss_pred EECChH
Confidence 998875
No 443
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=92.00 E-value=0.76 Score=42.69 Aligned_cols=37 Identities=22% Similarity=0.151 Sum_probs=31.7
Q ss_pred CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc
Q psy1959 160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE 197 (296)
Q Consensus 160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~ 197 (296)
..+++|+|+|++|-+|..++..+ ...|.+|+++++..
T Consensus 19 ~~~~~IlVtGgtGfIG~~l~~~L-~~~G~~V~~v~r~~ 55 (370)
T PLN02695 19 SEKLRICITGAGGFIASHIARRL-KAEGHYIIASDWKK 55 (370)
T ss_pred CCCCEEEEECCccHHHHHHHHHH-HhCCCEEEEEEecc
Confidence 36789999999999999999998 45799999998753
No 444
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=91.99 E-value=2 Score=36.02 Aligned_cols=96 Identities=16% Similarity=0.076 Sum_probs=60.0
Q ss_pred CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcEEEEcCCchhHHHHHHHHhCCCccc
Q psy1959 159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWAALTFTNEKSLVNKVLEVSGGKYAN 234 (296)
Q Consensus 159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~i~~~~~~~g~d 234 (296)
++++.+|+=.|+ |.|..+..++++..+++|+.++.+++..+.+++ .+.+. +.... .+..+ + .....+|
T Consensus 43 l~~g~~VLDiGc--GtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~-~d~~~-~---~~~~~fD 114 (187)
T PRK00107 43 LPGGERVLDVGS--GAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVH-GRAEE-F---GQEEKFD 114 (187)
T ss_pred cCCCCeEEEEcC--CCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEe-ccHhh-C---CCCCCcc
Confidence 446889998886 335666666644457899999999887766653 45432 22211 12221 1 1134799
Q ss_pred EEEECCCC---ccHHHHHHHhhccCceEEeec
Q psy1959 235 VVFEAVGG---EDKTDLIRQKGAWAALTFTNE 263 (296)
Q Consensus 235 ~vld~~g~---~~~~~~~~~lg~~~g~~~~~~ 263 (296)
+++..... ..+..+.++| +++|.+.+..
T Consensus 115 lV~~~~~~~~~~~l~~~~~~L-kpGG~lv~~~ 145 (187)
T PRK00107 115 VVTSRAVASLSDLVELCLPLL-KPGGRFLALK 145 (187)
T ss_pred EEEEccccCHHHHHHHHHHhc-CCCeEEEEEe
Confidence 99875432 3566788888 8999885543
No 445
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=91.91 E-value=0.56 Score=42.95 Aligned_cols=75 Identities=12% Similarity=0.075 Sum_probs=42.4
Q ss_pred cEEEEEcCCCcHHHHHHHHHHHhCCCEEE-EEeCCcch--HHHHHhc--CCcE-E--EEcCCchhHHHHHHHHhCCCccc
Q psy1959 163 QTVLVTAAGGGLGLAAVDMATKIYKAKVI-GVCNSEDK--TDLIRQK--GAWA-A--LTFTNEKSLVNKVLEVSGGKYAN 234 (296)
Q Consensus 163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi-~~~~~~~~--~~~~~~~--g~~~-~--~~~~~~~~~~~~i~~~~~~~g~d 234 (296)
.+|+|+|++|.+|..+++.+ ...|.+++ ++++.+.+ ...+... +... . .+..+.. .+.++....++|
T Consensus 2 ~~vlVtGatGfIG~~l~~~L-~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~----~~~~~~~~~~~D 76 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYI-INETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRA----ELARVFTEHQPD 76 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHH-HHcCCCEEEEEecCccccchhhhhhcccCCceEEEECCCcChH----HHHHHHhhcCCC
Confidence 37999999999999999888 44677644 44443221 1112211 1111 1 2223312 233333223689
Q ss_pred EEEECCCC
Q psy1959 235 VVFEAVGG 242 (296)
Q Consensus 235 ~vld~~g~ 242 (296)
++|++.+.
T Consensus 77 ~Vih~A~~ 84 (355)
T PRK10217 77 CVMHLAAE 84 (355)
T ss_pred EEEECCcc
Confidence 99999874
No 446
>PRK08309 short chain dehydrogenase; Provisional
Probab=91.89 E-value=1.1 Score=37.17 Aligned_cols=81 Identities=12% Similarity=0.121 Sum_probs=49.6
Q ss_pred EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCC--c-EE--EEcCCchhHHHHHHHHhC-CCcccEE
Q psy1959 164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGA--W-AA--LTFTNEKSLVNKVLEVSG-GKYANVV 236 (296)
Q Consensus 164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~--~-~~--~~~~~~~~~~~~i~~~~~-~~g~d~v 236 (296)
+++|+|++|..|..+..++ + .|++|++.++++++.+.+.. ++. . .. .+..+..+..+.+.+... ...+|.+
T Consensus 2 ~vlVtGGtG~gg~la~~L~-~-~G~~V~v~~R~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~id~l 79 (177)
T PRK08309 2 HALVIGGTGMLKRVSLWLC-E-KGFHVSVIARREVKLENVKRESTTPESITPLPLDYHDDDALKLAIKSTIEKNGPFDLA 79 (177)
T ss_pred EEEEECcCHHHHHHHHHHH-H-CcCEEEEEECCHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCeEE
Confidence 5899999765555444555 3 69999999988777665543 221 1 11 245553455555555432 2368999
Q ss_pred EECCCCccHH
Q psy1959 237 FEAVGGEDKT 246 (296)
Q Consensus 237 ld~~g~~~~~ 246 (296)
|+.+..+.-.
T Consensus 80 v~~vh~~~~~ 89 (177)
T PRK08309 80 VAWIHSSAKD 89 (177)
T ss_pred EEeccccchh
Confidence 9988765433
No 447
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=91.87 E-value=1.1 Score=35.62 Aligned_cols=78 Identities=21% Similarity=0.207 Sum_probs=45.5
Q ss_pred EEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchH-------HHHHhcCCcEE-E--EcCCchhHHHHHHHHhC-CC
Q psy1959 164 TVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKT-------DLIRQKGAWAA-L--TFTNEKSLVNKVLEVSG-GK 231 (296)
Q Consensus 164 ~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~-------~~~~~~g~~~~-~--~~~~~~~~~~~i~~~~~-~~ 231 (296)
+++|.|++|++|.++++.+ ...|. .|+.+.+++++. +.+++.+.... + +..+.....+.+.+... ..
T Consensus 2 ~~li~Ga~~~iG~~~~~~l-~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (180)
T smart00822 2 TYLITGGLGGLGLELARWL-AERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACDVADRAALAAALAAIPARLG 80 (180)
T ss_pred EEEEEcCCChHHHHHHHHH-HHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 6899999999999988777 34676 677777755432 23333343322 2 22221233333333221 23
Q ss_pred cccEEEECCCC
Q psy1959 232 YANVVFEAVGG 242 (296)
Q Consensus 232 g~d~vld~~g~ 242 (296)
.+|.++.+.|.
T Consensus 81 ~id~li~~ag~ 91 (180)
T smart00822 81 PLRGVIHAAGV 91 (180)
T ss_pred CeeEEEEcccc
Confidence 68999998873
No 448
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=91.72 E-value=3.2 Score=38.66 Aligned_cols=93 Identities=12% Similarity=0.143 Sum_probs=59.4
Q ss_pred cEEEEEcCCCcHHHHHHHHHHHhC-CCEEEEEeCCcc--h-HHHHHhcCCcEEEEcCCchhHH-----------------
Q psy1959 163 QTVLVTAAGGGLGLAAVDMATKIY-KAKVIGVCNSED--K-TDLIRQKGAWAALTFTNEKSLV----------------- 221 (296)
Q Consensus 163 ~~vlI~Ga~g~vG~aa~~la~~~~-g~~Vi~~~~~~~--~-~~~~~~~g~~~~~~~~~~~~~~----------------- 221 (296)
++|.|+|++|.+|..++.++++.. .++|+++..... + .+.++++.+..+...++ ....
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa~~n~~~L~~q~~~f~p~~v~i~d~-~~~~~l~~~l~~~~~~~~v~~ 80 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSAGKNVALMVEQILEFRPKFVAIDDE-ASLKDLKTMLQQQGSRTEVLV 80 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHcCCCEEEEcCH-HHHHHHHHHhhcCCCCcEEEE
Confidence 478999999999999999985432 468888775432 2 23445677766554432 1111
Q ss_pred --HHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCc
Q psy1959 222 --NKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAA 257 (296)
Q Consensus 222 --~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g 257 (296)
+.+.++.....+|+++.++-+ ..+.-.+..+ +.+-
T Consensus 81 G~~~l~~l~~~~~~D~vv~AivG~aGL~pt~~Ai-~~gk 118 (389)
T TIGR00243 81 GEEGICEMAALEDVDQVMNAIVGAAGLLPTLAAI-RAGK 118 (389)
T ss_pred CHHHHHHHHcCCCCCEEEEhhhcHhhHHHHHHHH-HCCC
Confidence 122233333468999998877 7788777777 4443
No 449
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=91.70 E-value=1.1 Score=40.52 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=35.9
Q ss_pred cEEEEEcCCCcHHHHHHHHHHHhCCC--EEEEEeCCcchHHHHHhcCC
Q psy1959 163 QTVLVTAAGGGLGLAAVDMATKIYKA--KVIGVCNSEDKTDLIRQKGA 208 (296)
Q Consensus 163 ~~vlI~Ga~g~vG~aa~~la~~~~g~--~Vi~~~~~~~~~~~~~~~g~ 208 (296)
.+|.|+|. |.+|.+.+..+ +..|. +|++.++++++.+.+++.|.
T Consensus 7 ~~I~IIG~-G~mG~sla~~l-~~~g~~~~V~~~dr~~~~~~~a~~~g~ 52 (307)
T PRK07502 7 DRVALIGI-GLIGSSLARAI-RRLGLAGEIVGADRSAETRARARELGL 52 (307)
T ss_pred cEEEEEee-CHHHHHHHHHH-HhcCCCcEEEEEECCHHHHHHHHhCCC
Confidence 57999996 99999888877 34564 89999999888888887775
No 450
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=91.70 E-value=0.76 Score=46.04 Aligned_cols=76 Identities=18% Similarity=0.230 Sum_probs=53.3
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc---------------------hHHHHHhcCCcEEEEcCCchh
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED---------------------KTDLIRQKGAWAALTFTNEKS 219 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~---------------------~~~~~~~~g~~~~~~~~~~~~ 219 (296)
.+++|+|+|+ |+.|+.++..+ +..|.+|++.++.+. +.++++++|++..++.....+
T Consensus 309 ~~kkVaIIG~-GpaGl~aA~~L-~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~ 386 (639)
T PRK12809 309 RSEKVAVIGA-GPAGLGCADIL-ARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRD 386 (639)
T ss_pred CCCEEEEECc-CHHHHHHHHHH-HHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCc
Confidence 4899999997 99999999988 457999999987653 456677788766554421011
Q ss_pred HHHHHHHHhCCCcccEEEECCCC
Q psy1959 220 LVNKVLEVSGGKYANVVFEAVGG 242 (296)
Q Consensus 220 ~~~~i~~~~~~~g~d~vld~~g~ 242 (296)
. .+.++. .++|.+|.++|.
T Consensus 387 ~--~~~~l~--~~~DaV~latGa 405 (639)
T PRK12809 387 I--TFSDLT--SEYDAVFIGVGT 405 (639)
T ss_pred C--CHHHHH--hcCCEEEEeCCC
Confidence 0 112222 368999999996
No 451
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=91.60 E-value=1.2 Score=40.03 Aligned_cols=77 Identities=21% Similarity=0.169 Sum_probs=43.8
Q ss_pred EEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-c----C---CcEE--EEcCCchhHHHHHHHHhCCCccc
Q psy1959 165 VLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-K----G---AWAA--LTFTNEKSLVNKVLEVSGGKYAN 234 (296)
Q Consensus 165 vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~----g---~~~~--~~~~~~~~~~~~i~~~~~~~g~d 234 (296)
|||+|++|.+|...++-..+....+++++++++.++-.++. + . .... ...-+ -.-.+.+.++....++|
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigD-vrd~~~l~~~~~~~~pd 79 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGD-VRDKERLNRIFEEYKPD 79 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTS-CCHHHHHHHHTT--T-S
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeec-ccCHHHHHHHHhhcCCC
Confidence 79999999999886666524334589999999998776653 3 1 1111 11222 22344566666556899
Q ss_pred EEEECCCC
Q psy1959 235 VVFEAVGG 242 (296)
Q Consensus 235 ~vld~~g~ 242 (296)
+||.+..-
T Consensus 80 iVfHaAA~ 87 (293)
T PF02719_consen 80 IVFHAAAL 87 (293)
T ss_dssp EEEE----
T ss_pred EEEEChhc
Confidence 99998874
No 452
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=91.58 E-value=0.71 Score=41.28 Aligned_cols=73 Identities=12% Similarity=0.130 Sum_probs=42.6
Q ss_pred EEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCCcEEE-EcCCchhHHHHHHHHhCCCcccEEEECCC
Q psy1959 165 VLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWAAL-TFTNEKSLVNKVLEVSGGKYANVVFEAVG 241 (296)
Q Consensus 165 vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~i~~~~~~~g~d~vld~~g 241 (296)
|||+|++|.+|..+++.+ ...|. .|+++++...... +.+++..... +..+ .+..+.+.+. .-.++|+|+.+.+
T Consensus 1 ilItGatG~iG~~l~~~L-~~~g~~~v~~~~~~~~~~~-~~~~~~~~~~~d~~~-~~~~~~~~~~-~~~~~D~vvh~A~ 75 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKAL-NERGITDILVVDNLRDGHK-FLNLADLVIADYIDK-EDFLDRLEKG-AFGKIEAIFHQGA 75 (314)
T ss_pred CEEeCCcchhhHHHHHHH-HHcCCceEEEEecCCCchh-hhhhhheeeeccCcc-hhHHHHHHhh-ccCCCCEEEECcc
Confidence 689999999999999888 45687 7888775443322 2222221111 1222 2233333221 1147999999886
No 453
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=91.52 E-value=0.21 Score=44.08 Aligned_cols=67 Identities=18% Similarity=0.123 Sum_probs=43.9
Q ss_pred EEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959 165 VLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG 242 (296)
Q Consensus 165 vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~ 242 (296)
|+|+|++|-+|..+++.+ ...|.+|++++++.++.+.+...+ ...... . ...+.. .++|+|+.+.+.
T Consensus 1 vlVtGatG~iG~~l~~~L-~~~g~~V~~~~r~~~~~~~~~~~~---~~~~~~-~----~~~~~~--~~~D~Vvh~a~~ 67 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRL-TKDGHEVTILTRSPPAGANTKWEG---YKPWAP-L----AESEAL--EGADAVINLAGE 67 (292)
T ss_pred CEEEcccchhhHHHHHHH-HHcCCEEEEEeCCCCCCCccccee---eecccc-c----chhhhc--CCCCEEEECCCC
Confidence 589999999999999877 446999999999877654322111 111111 1 111222 379999999974
No 454
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=91.48 E-value=0.91 Score=40.47 Aligned_cols=73 Identities=16% Similarity=0.174 Sum_probs=48.3
Q ss_pred CCCcEEEEEcCCCcHHHHHHHHHHHhCC-CEEEEEeCCcchHHHHHh-cCCcEEEEcCCchhHHHHHHHHhCCCcccEEE
Q psy1959 160 KEKQTVLVTAAGGGLGLAAVDMATKIYK-AKVIGVCNSEDKTDLIRQ-KGAWAALTFTNEKSLVNKVLEVSGGKYANVVF 237 (296)
Q Consensus 160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g-~~Vi~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vl 237 (296)
..+++++|+|+ |++|.+++..+ ...| .+|+++.++.++.+.+.+ +.....+.. . .+. .+. -..+|+++
T Consensus 121 ~~~k~vlVlGa-Gg~a~ai~~aL-~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~-~-~~~----~~~--~~~~DivI 190 (278)
T PRK00258 121 LKGKRILILGA-GGAARAVILPL-LDLGVAEITIVNRTVERAEELAKLFGALGKAEL-D-LEL----QEE--LADFDLII 190 (278)
T ss_pred CCCCEEEEEcC-cHHHHHHHHHH-HHcCCCEEEEEeCCHHHHHHHHHHhhhccceee-c-ccc----hhc--cccCCEEE
Confidence 35788999997 99999999888 4578 699999999888776654 321110111 1 000 111 13689999
Q ss_pred ECCCC
Q psy1959 238 EAVGG 242 (296)
Q Consensus 238 d~~g~ 242 (296)
+|+..
T Consensus 191 naTp~ 195 (278)
T PRK00258 191 NATSA 195 (278)
T ss_pred ECCcC
Confidence 98864
No 455
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=91.44 E-value=0.94 Score=40.58 Aligned_cols=42 Identities=14% Similarity=0.141 Sum_probs=35.1
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHH
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIR 204 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~ 204 (296)
.+++++|.|+ |+.|.+++..+ ...|+ +|++++++.+|.+.+.
T Consensus 126 ~~k~vlIlGa-GGaaraia~aL-~~~G~~~I~I~nR~~~ka~~la 168 (284)
T PRK12549 126 SLERVVQLGA-GGAGAAVAHAL-LTLGVERLTIFDVDPARAAALA 168 (284)
T ss_pred cCCEEEEECC-cHHHHHHHHHH-HHcCCCEEEEECCCHHHHHHHH
Confidence 5689999997 99999988888 45787 8999999988877664
No 456
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=91.39 E-value=0.53 Score=41.05 Aligned_cols=70 Identities=21% Similarity=0.201 Sum_probs=48.5
Q ss_pred EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEE-EcCCchhHHHHHHHHhCCCcccEEEECCC
Q psy1959 164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAAL-TFTNEKSLVNKVLEVSGGKYANVVFEAVG 241 (296)
Q Consensus 164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~i~~~~~~~g~d~vld~~g 241 (296)
+|+|+|++|.+|..+++.+ ...|.+|.++.++.++..... .+..... ++.+.. .+... .+|+|.++-+.+
T Consensus 2 ~ilV~GatG~~G~~~~~~L-~~~~~~v~~~~r~~~~~~~~~-~~v~~~~~d~~~~~----~l~~a--~~G~~~~~~i~~ 72 (275)
T COG0702 2 KILVTGATGFVGGAVVREL-LARGHEVRAAVRNPEAAAALA-GGVEVVLGDLRDPK----SLVAG--AKGVDGVLLISG 72 (275)
T ss_pred eEEEEecccchHHHHHHHH-HhCCCEEEEEEeCHHHHHhhc-CCcEEEEeccCCHh----HHHHH--hccccEEEEEec
Confidence 6899999999999999998 456999999999999888877 5554433 233312 22222 236666666555
No 457
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=91.32 E-value=2.3 Score=38.32 Aligned_cols=59 Identities=29% Similarity=0.321 Sum_probs=47.2
Q ss_pred HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC---CcchHHHHHhcCCcEEEEcC
Q psy1959 155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN---SEDKTDLIRQKGAWAALTFT 215 (296)
Q Consensus 155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~---~~~~~~~~~~~g~~~~~~~~ 215 (296)
+...+++|. .+|-+.+|.+|.+.+.+| +.+|++++.+.. +.+|.+.++.+|+..++...
T Consensus 55 ~~G~l~pG~-tIVE~TSGNTGI~LA~va-a~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~ 116 (300)
T COG0031 55 KRGLLKPGG-TIVEATSGNTGIALAMVA-AAKGYRLIIVMPETMSQERRKLLRALGAEVILTPG 116 (300)
T ss_pred HcCCCCCCC-EEEEcCCChHHHHHHHHH-HHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCC
Confidence 567799998 556788899999999999 678998777754 77788999999987665543
No 458
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=91.30 E-value=1.6 Score=37.72 Aligned_cols=84 Identities=13% Similarity=0.137 Sum_probs=56.7
Q ss_pred EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959 164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG 242 (296)
Q Consensus 164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~ 242 (296)
.++|.|+ |-+|+..++.+ ...|..|+++++++++...... .-...++..+. .-.+.++++ +-..+|+++-+.|+
T Consensus 2 ~iiIiG~-G~vG~~va~~L-~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~--t~~~~L~~a-gi~~aD~vva~t~~ 76 (225)
T COG0569 2 KIIIIGA-GRVGRSVAREL-SEEGHNVVLIDRDEERVEEFLADELDTHVVIGDA--TDEDVLEEA-GIDDADAVVAATGN 76 (225)
T ss_pred EEEEECC-cHHHHHHHHHH-HhCCCceEEEEcCHHHHHHHhhhhcceEEEEecC--CCHHHHHhc-CCCcCCEEEEeeCC
Confidence 5789998 99999999988 5679999999999999877333 22233343322 112334443 45689999999998
Q ss_pred ccHHHHHHHh
Q psy1959 243 EDKTDLIRQK 252 (296)
Q Consensus 243 ~~~~~~~~~l 252 (296)
...+..+-++
T Consensus 77 d~~N~i~~~l 86 (225)
T COG0569 77 DEVNSVLALL 86 (225)
T ss_pred CHHHHHHHHH
Confidence 5444443333
No 459
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=91.29 E-value=1.1 Score=43.50 Aligned_cols=79 Identities=24% Similarity=0.323 Sum_probs=51.5
Q ss_pred CCcEEEEEcCCCcHHHH-HHHHHHHhCCCEEEEEeCCcchHHHHHh-c----CCcE-EEEcCCchhHHHHHHHHhCCCcc
Q psy1959 161 EKQTVLVTAAGGGLGLA-AVDMATKIYKAKVIGVCNSEDKTDLIRQ-K----GAWA-ALTFTNEKSLVNKVLEVSGGKYA 233 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~a-a~~la~~~~g~~Vi~~~~~~~~~~~~~~-~----g~~~-~~~~~~~~~~~~~i~~~~~~~g~ 233 (296)
.|++|+|+|++|.+|.. +-|++ +....+++..+++|.++..+.. + +... ....-+..+ .+.+.++..+.++
T Consensus 249 ~gK~vLVTGagGSiGsel~~qil-~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD-~~~~~~~~~~~kv 326 (588)
T COG1086 249 TGKTVLVTGGGGSIGSELCRQIL-KFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRD-RDRVERAMEGHKV 326 (588)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHH-hcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEeccccc-HHHHHHHHhcCCC
Confidence 59999999999999976 55666 5445589999988887765532 2 2122 121222122 2345555556689
Q ss_pred cEEEECCC
Q psy1959 234 NVVFEAVG 241 (296)
Q Consensus 234 d~vld~~g 241 (296)
|+||.+..
T Consensus 327 d~VfHAAA 334 (588)
T COG1086 327 DIVFHAAA 334 (588)
T ss_pred ceEEEhhh
Confidence 99999875
No 460
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=91.28 E-value=2 Score=38.43 Aligned_cols=101 Identities=18% Similarity=0.169 Sum_probs=66.8
Q ss_pred HHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcE-E-EEcCCchhHHH
Q psy1959 149 AQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWA-A-LTFTNEKSLVN 222 (296)
Q Consensus 149 a~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~-~-~~~~~~~~~~~ 222 (296)
++..+.+..++++|+++|=+|+ | =|.+++..| +.++.+|+.++.|++..+.+++ .|... + +...+-.++
T Consensus 60 k~~~~~~kl~L~~G~~lLDiGC-G-WG~l~~~aA-~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~-- 134 (283)
T COG2230 60 KLDLILEKLGLKPGMTLLDIGC-G-WGGLAIYAA-EEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF-- 134 (283)
T ss_pred HHHHHHHhcCCCCCCEEEEeCC-C-hhHHHHHHH-HHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc--
Confidence 4455558899999999999996 4 488888889 5579999999999998877765 35441 1 111110111
Q ss_pred HHHHHhCCCcccEEEE-----CCCCc----cHHHHHHHhhccCceEEee
Q psy1959 223 KVLEVSGGKYANVVFE-----AVGGE----DKTDLIRQKGAWAALTFTN 262 (296)
Q Consensus 223 ~i~~~~~~~g~d~vld-----~~g~~----~~~~~~~~lg~~~g~~~~~ 262 (296)
. ..+|-++. .+|.+ .+..+.+.| +++|.+.+.
T Consensus 135 -----~--e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L-~~~G~~llh 175 (283)
T COG2230 135 -----E--EPFDRIVSVGMFEHVGKENYDDFFKKVYALL-KPGGRMLLH 175 (283)
T ss_pred -----c--cccceeeehhhHHHhCcccHHHHHHHHHhhc-CCCceEEEE
Confidence 1 12665544 45542 466777778 888877543
No 461
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=91.24 E-value=3.8 Score=34.82 Aligned_cols=101 Identities=15% Similarity=0.091 Sum_probs=64.1
Q ss_pred HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCC--CEEEEEeCCcchHHHHHh----cCCcEE-EEcCCchhHHHHHHHH
Q psy1959 155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYK--AKVIGVCNSEDKTDLIRQ----KGAWAA-LTFTNEKSLVNKVLEV 227 (296)
Q Consensus 155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g--~~Vi~~~~~~~~~~~~~~----~g~~~~-~~~~~~~~~~~~i~~~ 227 (296)
+...++++++||=.|+ |.|..+..+++ ..+ .+|+.++.+++-.+.+++ .+.+.+ +...+ ..+..
T Consensus 71 ~~l~~~~~~~VLDiG~--GsG~~a~~la~-~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d---~~~~~--- 141 (215)
T TIGR00080 71 ELLELKPGMKVLEIGT--GSGYQAAVLAE-IVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGD---GTQGW--- 141 (215)
T ss_pred HHhCCCCcCEEEEECC--CccHHHHHHHH-HhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECC---cccCC---
Confidence 5567889999999884 55777778884 333 469999998887766653 344322 11111 11111
Q ss_pred hCCCcccEEEECCCC-ccHHHHHHHhhccCceEEeeccc
Q psy1959 228 SGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFTNEKS 265 (296)
Q Consensus 228 ~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~~~~~ 265 (296)
.....+|+++-.... .......+.| +.+|.+.++...
T Consensus 142 ~~~~~fD~Ii~~~~~~~~~~~~~~~L-~~gG~lv~~~~~ 179 (215)
T TIGR00080 142 EPLAPYDRIYVTAAGPKIPEALIDQL-KEGGILVMPVGE 179 (215)
T ss_pred cccCCCCEEEEcCCcccccHHHHHhc-CcCcEEEEEEcC
Confidence 112479988765544 4566777888 999998776554
No 462
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=91.23 E-value=1.9 Score=37.59 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeC
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCN 195 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~ 195 (296)
+.++|+|.|. |++|.+++..+. ..|. ++..+|-
T Consensus 29 ~~~~V~VvGi-GGVGSw~veALa-RsGig~itlID~ 62 (263)
T COG1179 29 KQAHVCVVGI-GGVGSWAVEALA-RSGIGRITLIDM 62 (263)
T ss_pred hhCcEEEEec-CchhHHHHHHHH-HcCCCeEEEEec
Confidence 4578999998 999999999884 4677 7777764
No 463
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=91.20 E-value=0.56 Score=42.10 Aligned_cols=63 Identities=16% Similarity=0.162 Sum_probs=40.3
Q ss_pred EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959 164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG 242 (296)
Q Consensus 164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~ 242 (296)
+|||+|++|-+|...++.+ ...| +|+++++.... ...+..+ . +.+.+.....++|+||++.+.
T Consensus 2 ~iLVtG~~GfiGs~l~~~L-~~~g-~V~~~~~~~~~----------~~~Dl~d-~---~~~~~~~~~~~~D~Vih~Aa~ 64 (299)
T PRK09987 2 NILLFGKTGQVGWELQRAL-APLG-NLIALDVHSTD----------YCGDFSN-P---EGVAETVRKIRPDVIVNAAAH 64 (299)
T ss_pred eEEEECCCCHHHHHHHHHh-hccC-CEEEecccccc----------ccCCCCC-H---HHHHHHHHhcCCCEEEECCcc
Confidence 6999999999999998877 4457 78887764220 0112223 1 223333333468999998874
No 464
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=91.19 E-value=1.6 Score=40.15 Aligned_cols=35 Identities=23% Similarity=0.215 Sum_probs=27.4
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCc
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSE 197 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~ 197 (296)
.+.+|+|.|+ |++|..++..+ ...|. ++.++|.+.
T Consensus 23 ~~~~VlIiG~-GglGs~va~~L-a~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGA-GALGAANAEAL-VRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECC-CHHHHHHHHHH-HHcCCCEEEEEcCCc
Confidence 4468999998 99999888877 44687 888888653
No 465
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=91.14 E-value=1.1 Score=39.91 Aligned_cols=46 Identities=13% Similarity=0.133 Sum_probs=36.2
Q ss_pred CCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHh
Q psy1959 158 KLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQ 205 (296)
Q Consensus 158 ~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~ 205 (296)
+...+++++|.|+ |+.+++++..+ ...|+ +|+++.|+.+|.+.+.+
T Consensus 118 ~~~~~~~vlilGa-GGaarAi~~aL-~~~g~~~i~i~nR~~~~a~~la~ 164 (272)
T PRK12550 118 QVPPDLVVALRGS-GGMAKAVAAAL-RDAGFTDGTIVARNEKTGKALAE 164 (272)
T ss_pred CCCCCCeEEEECC-cHHHHHHHHHH-HHCCCCEEEEEeCCHHHHHHHHH
Confidence 3445678999997 99999988877 44687 79999999888776654
No 466
>PLN02730 enoyl-[acyl-carrier-protein] reductase
Probab=91.14 E-value=0.52 Score=42.64 Aligned_cols=38 Identities=11% Similarity=0.115 Sum_probs=30.5
Q ss_pred CCcEEEEEcC--CCcHHHHHHHHHHHhCCCEEEEEeCCcchH
Q psy1959 161 EKQTVLVTAA--GGGLGLAAVDMATKIYKAKVIGVCNSEDKT 200 (296)
Q Consensus 161 ~g~~vlI~Ga--~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~ 200 (296)
.|++++|+|+ +.++|.++++.+ ...|++|++ .+...++
T Consensus 8 ~gk~alITGa~~s~GIG~a~A~~l-a~~Ga~Vv~-~~~~~~l 47 (303)
T PLN02730 8 RGKRAFIAGVADDNGYGWAIAKAL-AAAGAEILV-GTWVPAL 47 (303)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHH-HHCCCEEEE-EeCcchh
Confidence 5899999999 799999988888 457999988 4444443
No 467
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=90.94 E-value=0.91 Score=40.62 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=36.9
Q ss_pred CCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhc
Q psy1959 160 KEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQK 206 (296)
Q Consensus 160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~ 206 (296)
.++++++|.|+ ||.+.+++.-+ ...|+ +++++.|+.+|.+.+.+.
T Consensus 124 ~~~~~vlilGA-GGAarAv~~aL-~~~g~~~i~V~NRt~~ra~~La~~ 169 (283)
T COG0169 124 VTGKRVLILGA-GGAARAVAFAL-AEAGAKRITVVNRTRERAEELADL 169 (283)
T ss_pred cCCCEEEEECC-cHHHHHHHHHH-HHcCCCEEEEEeCCHHHHHHHHHH
Confidence 35899999998 88899888877 45685 899999999988777653
No 468
>PRK09620 hypothetical protein; Provisional
Probab=90.91 E-value=1.2 Score=38.54 Aligned_cols=82 Identities=20% Similarity=0.160 Sum_probs=49.2
Q ss_pred CCcEEEEEcCC----------------CcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHH
Q psy1959 161 EKQTVLVTAAG----------------GGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKV 224 (296)
Q Consensus 161 ~g~~vlI~Ga~----------------g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i 224 (296)
.|.+|+|+++. |-+|...++.+ ...|++|+++++.-.........+... .......+..+.+
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L-~~~Ga~V~li~g~~~~~~~~~~~~~~~-~~V~s~~d~~~~l 79 (229)
T PRK09620 2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEEL-ISKGAHVIYLHGYFAEKPNDINNQLEL-HPFEGIIDLQDKM 79 (229)
T ss_pred CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHH-HHCCCeEEEEeCCCcCCCcccCCceeE-EEEecHHHHHHHH
Confidence 46777777654 88999999999 568999998886422111100001111 1111113455666
Q ss_pred HHHhCCCcccEEEECCCCcc
Q psy1959 225 LEVSGGKYANVVFEAVGGED 244 (296)
Q Consensus 225 ~~~~~~~g~d~vld~~g~~~ 244 (296)
.+.....++|++|.+..-..
T Consensus 80 ~~~~~~~~~D~VIH~AAvsD 99 (229)
T PRK09620 80 KSIITHEKVDAVIMAAAGSD 99 (229)
T ss_pred HHHhcccCCCEEEECccccc
Confidence 66665457899999887643
No 469
>KOG1252|consensus
Probab=90.89 E-value=1.4 Score=40.04 Aligned_cols=57 Identities=25% Similarity=0.309 Sum_probs=49.5
Q ss_pred HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC---CcchHHHHHhcCCcEEE
Q psy1959 155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN---SEDKTDLIRQKGAWAAL 212 (296)
Q Consensus 155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~---~~~~~~~~~~~g~~~~~ 212 (296)
..+.++||.++||-+-+|.+|...+.+| ...|++++++-. +.||...++.+|+..+.
T Consensus 96 ~~G~i~pg~stliEpTSGNtGigLA~~~-a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~ 155 (362)
T KOG1252|consen 96 KKGLITPGKSTLIEPTSGNTGIGLAYMA-ALRGYKCIITMPEKMSKEKRILLRALGAEIIL 155 (362)
T ss_pred HcCCccCCceEEEecCCCchHHHHHHHH-HHcCceEEEEechhhhHHHHHHHHHcCCEEEe
Confidence 5677899999999999999999999999 778999988875 67788999999986654
No 470
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=90.87 E-value=0.88 Score=45.72 Aligned_cols=77 Identities=21% Similarity=0.245 Sum_probs=50.4
Q ss_pred CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc---------------------hHHHHHhcCCcEEEEcCCch
Q psy1959 160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED---------------------KTDLIRQKGAWAALTFTNEK 218 (296)
Q Consensus 160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~---------------------~~~~~~~~g~~~~~~~~~~~ 218 (296)
..+++|+|+|+ |+.|+.++..+ ...|.+|+++++.+. ..++++++|++...+..-..
T Consensus 325 ~~~~~VaIIGa-GpAGLsaA~~L-~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~ 402 (654)
T PRK12769 325 KSDKRVAIIGA-GPAGLACADVL-ARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGK 402 (654)
T ss_pred cCCCEEEEECC-CHHHHHHHHHH-HHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCC
Confidence 35889999997 99999999988 457999999987543 34556667765433221101
Q ss_pred hHHHHHHHHhCCCcccEEEECCCC
Q psy1959 219 SLVNKVLEVSGGKYANVVFEAVGG 242 (296)
Q Consensus 219 ~~~~~i~~~~~~~g~d~vld~~g~ 242 (296)
+. .+.+.. ..+|.+|.+.|.
T Consensus 403 ~i--~~~~~~--~~~DavilAtGa 422 (654)
T PRK12769 403 DI--SLESLL--EDYDAVFVGVGT 422 (654)
T ss_pred cC--CHHHHH--hcCCEEEEeCCC
Confidence 10 111111 268999998885
No 471
>PLN02572 UDP-sulfoquinovose synthase
Probab=90.86 E-value=1.3 Score=42.21 Aligned_cols=35 Identities=26% Similarity=0.154 Sum_probs=29.8
Q ss_pred CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC
Q psy1959 160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN 195 (296)
Q Consensus 160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~ 195 (296)
.++++|+|+|++|.+|...++.+ ...|.+|+++++
T Consensus 45 ~~~k~VLVTGatGfIGs~Lv~~L-~~~G~~V~~~d~ 79 (442)
T PLN02572 45 SKKKKVMVIGGDGYCGWATALHL-SKRGYEVAIVDN 79 (442)
T ss_pred ccCCEEEEECCCcHHHHHHHHHH-HHCCCeEEEEec
Confidence 35789999999999999988888 457999999874
No 472
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=90.71 E-value=2.1 Score=37.40 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=25.6
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeC
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCN 195 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~ 195 (296)
.+.+|+|.|+ |++|..+++.+ ...|. +++++|.
T Consensus 23 ~~~~VlvvG~-GglGs~va~~L-a~~Gvg~i~lvD~ 56 (240)
T TIGR02355 23 KASRVLIVGL-GGLGCAASQYL-AAAGVGNLTLLDF 56 (240)
T ss_pred hCCcEEEECc-CHHHHHHHHHH-HHcCCCEEEEEeC
Confidence 3478999998 99999888888 44677 7777664
No 473
>PRK14967 putative methyltransferase; Provisional
Probab=90.57 E-value=6.6 Score=33.58 Aligned_cols=73 Identities=22% Similarity=0.109 Sum_probs=47.6
Q ss_pred HcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHh----cCCcEEEEcCCchhHHHHHHHHhCC
Q psy1959 156 HAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQ----KGAWAALTFTNEKSLVNKVLEVSGG 230 (296)
Q Consensus 156 ~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~i~~~~~~ 230 (296)
...++++++|+-.|+ |. |..+..++ +. ++ +|+.++.+++..+.+++ .+....+.. .++.+. ...
T Consensus 31 ~~~~~~~~~vLDlGc-G~-G~~~~~la-~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~---~d~~~~----~~~ 99 (223)
T PRK14967 31 AEGLGPGRRVLDLCT-GS-GALAVAAA-AA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRR---GDWARA----VEF 99 (223)
T ss_pred hcccCCCCeEEEecC-CH-HHHHHHHH-Hc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEE---Cchhhh----ccC
Confidence 345778899999986 55 88888888 43 55 99999999887776554 343322222 122221 123
Q ss_pred CcccEEEEC
Q psy1959 231 KYANVVFEA 239 (296)
Q Consensus 231 ~g~d~vld~ 239 (296)
..+|+|+.+
T Consensus 100 ~~fD~Vi~n 108 (223)
T PRK14967 100 RPFDVVVSN 108 (223)
T ss_pred CCeeEEEEC
Confidence 479999986
No 474
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=90.54 E-value=1.2 Score=33.38 Aligned_cols=82 Identities=17% Similarity=0.173 Sum_probs=51.7
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECC
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAV 240 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~ 240 (296)
.|.+|+|.|+ |.+|..-++.+ ...|++|+++.... ...+ +.-... . ..+. + .-.++++|+-+.
T Consensus 6 ~~~~vlVvGg-G~va~~k~~~L-l~~gA~v~vis~~~---~~~~--~~i~~~-~---~~~~----~--~l~~~~lV~~at 68 (103)
T PF13241_consen 6 KGKRVLVVGG-GPVAARKARLL-LEAGAKVTVISPEI---EFSE--GLIQLI-R---REFE----E--DLDGADLVFAAT 68 (103)
T ss_dssp TT-EEEEEEE-SHHHHHHHHHH-CCCTBEEEEEESSE---HHHH--TSCEEE-E---SS-G----G--GCTTESEEEE-S
T ss_pred CCCEEEEECC-CHHHHHHHHHH-HhCCCEEEEECCch---hhhh--hHHHHH-h---hhHH----H--HHhhheEEEecC
Confidence 5789999998 99999988888 56799999999765 2222 211211 1 1221 1 134799999999
Q ss_pred CCccHHHHHHHhhccCceE
Q psy1959 241 GGEDKTDLIRQKGAWAALT 259 (296)
Q Consensus 241 g~~~~~~~~~~lg~~~g~~ 259 (296)
+.+.++..+....+.-+..
T Consensus 69 ~d~~~n~~i~~~a~~~~i~ 87 (103)
T PF13241_consen 69 DDPELNEAIYADARARGIL 87 (103)
T ss_dssp S-HHHHHHHHHHHHHTTSE
T ss_pred CCHHHHHHHHHHHhhCCEE
Confidence 9977777666663444444
No 475
>KOG1611|consensus
Probab=90.53 E-value=1.3 Score=38.11 Aligned_cols=80 Identities=24% Similarity=0.313 Sum_probs=52.0
Q ss_pred cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEE-eCCcch-HHHHHhcC---Cc-EE--EEcCCc---hhHHHHHHHHhCCC
Q psy1959 163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGV-CNSEDK-TDLIRQKG---AW-AA--LTFTNE---KSLVNKVLEVSGGK 231 (296)
Q Consensus 163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~-~~~~~~-~~~~~~~g---~~-~~--~~~~~~---~~~~~~i~~~~~~~ 231 (296)
.+++|.|+..|+|+-.++-..+..+.+++.. .++.++ ..++.... .. ++ ++.+.. .++.+++.+..+.+
T Consensus 4 ksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a~~~l~~k~~~d~rvHii~Ldvt~deS~~~~~~~V~~iVg~~ 83 (249)
T KOG1611|consen 4 KSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKAATELALKSKSDSRVHIIQLDVTCDESIDNFVQEVEKIVGSD 83 (249)
T ss_pred ccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHhhHHHHHhhccCCceEEEEEecccHHHHHHHHHHHHhhcccC
Confidence 4599999999999988877757678866554 444666 33333321 11 12 222222 45556666677788
Q ss_pred cccEEEECCCC
Q psy1959 232 YANVVFEAVGG 242 (296)
Q Consensus 232 g~d~vld~~g~ 242 (296)
|.|+.+++.|-
T Consensus 84 GlnlLinNaGi 94 (249)
T KOG1611|consen 84 GLNLLINNAGI 94 (249)
T ss_pred CceEEEeccce
Confidence 99999999984
No 476
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=90.49 E-value=2.1 Score=39.42 Aligned_cols=34 Identities=32% Similarity=0.346 Sum_probs=27.4
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCC
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNS 196 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~ 196 (296)
...+|+|.|+ |++|..++..+ ...|. ++.++|.+
T Consensus 23 ~~~~VlVvG~-GglGs~va~~L-a~aGvg~i~lvD~D 57 (339)
T PRK07688 23 REKHVLIIGA-GALGTANAEML-VRAGVGKVTIVDRD 57 (339)
T ss_pred cCCcEEEECC-CHHHHHHHHHH-HHcCCCeEEEEeCC
Confidence 4478999998 99999888877 44688 88888875
No 477
>PRK04457 spermidine synthase; Provisional
Probab=90.34 E-value=6.2 Score=34.85 Aligned_cols=97 Identities=12% Similarity=0.034 Sum_probs=61.9
Q ss_pred CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhc-CC---cEEEEcCCchhHHHHHHHHhCCCcccE
Q psy1959 160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK-GA---WAALTFTNEKSLVNKVLEVSGGKYANV 235 (296)
Q Consensus 160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~-g~---~~~~~~~~~~~~~~~i~~~~~~~g~d~ 235 (296)
.+.++|+.+|+ | .|..+..+++...+.++++++.+++-.+.+++. +. +.-+.... .+..+.+.+. ...+|+
T Consensus 65 ~~~~~vL~IG~-G-~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~-~Da~~~l~~~--~~~yD~ 139 (262)
T PRK04457 65 PRPQHILQIGL-G-GGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIE-ADGAEYIAVH--RHSTDV 139 (262)
T ss_pred CCCCEEEEECC-C-HhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEE-CCHHHHHHhC--CCCCCE
Confidence 45678999995 3 477888887554467999999999988888764 21 11121111 2334444432 347897
Q ss_pred EEE-CCCC----------ccHHHHHHHhhccCceEEee
Q psy1959 236 VFE-AVGG----------EDKTDLIRQKGAWAALTFTN 262 (296)
Q Consensus 236 vld-~~g~----------~~~~~~~~~lg~~~g~~~~~ 262 (296)
++- +... +.+..+.+.| +++|.+.++
T Consensus 140 I~~D~~~~~~~~~~l~t~efl~~~~~~L-~pgGvlvin 176 (262)
T PRK04457 140 ILVDGFDGEGIIDALCTQPFFDDCRNAL-SSDGIFVVN 176 (262)
T ss_pred EEEeCCCCCCCccccCcHHHHHHHHHhc-CCCcEEEEE
Confidence 774 2211 3467788888 899998765
No 478
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=90.32 E-value=0.67 Score=41.07 Aligned_cols=67 Identities=15% Similarity=0.083 Sum_probs=46.0
Q ss_pred EEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCc
Q psy1959 165 VLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE 243 (296)
Q Consensus 165 vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~ 243 (296)
|+|.|++|-+|.+.++.. ...|-.|++++|++.+.......... ..+.+.+... .++|+||+-.|-+
T Consensus 1 IliTGgTGlIG~~L~~~L-~~~gh~v~iltR~~~~~~~~~~~~v~----------~~~~~~~~~~-~~~DavINLAG~~ 67 (297)
T COG1090 1 ILITGGTGLIGRALTARL-RKGGHQVTILTRRPPKASQNLHPNVT----------LWEGLADALT-LGIDAVINLAGEP 67 (297)
T ss_pred CeEeccccchhHHHHHHH-HhCCCeEEEEEcCCcchhhhcCcccc----------ccchhhhccc-CCCCEEEECCCCc
Confidence 589999999999999988 45788999999988776643222211 1112222221 2799999988854
No 479
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=90.31 E-value=1.8 Score=43.31 Aligned_cols=76 Identities=16% Similarity=0.215 Sum_probs=56.6
Q ss_pred CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCC
Q psy1959 162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVG 241 (296)
Q Consensus 162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g 241 (296)
.++++|.|. |.+|+..++.+ ...|.++++++.++++.+.+++.|... +..+. .-.+.+ +..+-+.+|.++-+.+
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L-~~~g~~vvvID~d~~~v~~~~~~g~~v-~~GDa--t~~~~L-~~agi~~A~~vvv~~~ 473 (621)
T PRK03562 400 QPRVIIAGF-GRFGQIVGRLL-LSSGVKMTVLDHDPDHIETLRKFGMKV-FYGDA--TRMDLL-ESAGAAKAEVLINAID 473 (621)
T ss_pred cCcEEEEec-ChHHHHHHHHH-HhCCCCEEEEECCHHHHHHHHhcCCeE-EEEeC--CCHHHH-HhcCCCcCCEEEEEeC
Confidence 368999997 99999999999 557899999999999999999888643 32221 112233 3334557899999998
Q ss_pred Cc
Q psy1959 242 GE 243 (296)
Q Consensus 242 ~~ 243 (296)
++
T Consensus 474 d~ 475 (621)
T PRK03562 474 DP 475 (621)
T ss_pred CH
Confidence 84
No 480
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.28 E-value=2.4 Score=40.33 Aligned_cols=71 Identities=25% Similarity=0.195 Sum_probs=46.9
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc-chH----HHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccE
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE-DKT----DLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANV 235 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~-~~~----~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~ 235 (296)
.+++++|+|+ |.+|+.++..+ ...|++|++.+... +.. +.+...|.. .+..+. .+ . . ..++|+
T Consensus 4 ~~k~v~iiG~-g~~G~~~A~~l-~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~-~~~~~~-~~---~---~--~~~~d~ 71 (450)
T PRK14106 4 KGKKVLVVGA-GVSGLALAKFL-KKLGAKVILTDEKEEDQLKEALEELGELGIE-LVLGEY-PE---E---F--LEGVDL 71 (450)
T ss_pred CCCEEEEECC-CHHHHHHHHHH-HHCCCEEEEEeCCchHHHHHHHHHHHhcCCE-EEeCCc-ch---h---H--hhcCCE
Confidence 4688999998 77999988888 55899999999864 222 333444543 222221 11 1 1 136899
Q ss_pred EEECCCCc
Q psy1959 236 VFEAVGGE 243 (296)
Q Consensus 236 vld~~g~~ 243 (296)
++.+.|..
T Consensus 72 vv~~~g~~ 79 (450)
T PRK14106 72 VVVSPGVP 79 (450)
T ss_pred EEECCCCC
Confidence 99999863
No 481
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=90.25 E-value=3.2 Score=35.87 Aligned_cols=80 Identities=16% Similarity=0.249 Sum_probs=49.0
Q ss_pred CCCcEEEEEcCCCcHHHHHHHHHHHhCCC---EEEEEeCC----cch--------HHHHHhcCCcEEEEcCCchhHHHHH
Q psy1959 160 KEKQTVLVTAAGGGLGLAAVDMATKIYKA---KVIGVCNS----EDK--------TDLIRQKGAWAALTFTNEKSLVNKV 224 (296)
Q Consensus 160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~---~Vi~~~~~----~~~--------~~~~~~~g~~~~~~~~~~~~~~~~i 224 (296)
-++++++|+|+ |+.|.+++..+ ...|+ ++++++++ +++ .+++++++... . . .++.+.+
T Consensus 23 l~~~rvlvlGA-GgAg~aiA~~L-~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~-~---~-~~l~~~l 95 (226)
T cd05311 23 IEEVKIVINGA-GAAGIAIARLL-LAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK-T---G-GTLKEAL 95 (226)
T ss_pred ccCCEEEEECc-hHHHHHHHHHH-HHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc-c---c-CCHHHHH
Confidence 36789999998 99999988877 44677 59999987 443 22333332211 0 0 1222222
Q ss_pred HHHhCCCcccEEEECCCCccH-HHHHHHh
Q psy1959 225 LEVSGGKYANVVFEAVGGEDK-TDLIRQK 252 (296)
Q Consensus 225 ~~~~~~~g~d~vld~~g~~~~-~~~~~~l 252 (296)
+++|++|++++.-.+ ...++.+
T Consensus 96 ------~~~dvlIgaT~~G~~~~~~l~~m 118 (226)
T cd05311 96 ------KGADVFIGVSRPGVVKKEMIKKM 118 (226)
T ss_pred ------hcCCEEEeCCCCCCCCHHHHHhh
Confidence 248999999974222 3556666
No 482
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=90.22 E-value=2.9 Score=34.17 Aligned_cols=97 Identities=18% Similarity=0.111 Sum_probs=59.0
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc-hHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEEC
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED-KTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEA 239 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~ 239 (296)
++++|.|+|- |..|.+..+-+ +..|.+|++..+..+ ..+.+++-|+.. .+..+.+ +..|+++-.
T Consensus 3 ~~k~IAViGy-GsQG~a~AlNL-rDSG~~V~Vglr~~s~s~~~A~~~Gf~v-------~~~~eAv------~~aDvV~~L 67 (165)
T PF07991_consen 3 KGKTIAVIGY-GSQGHAHALNL-RDSGVNVIVGLREGSASWEKAKADGFEV-------MSVAEAV------KKADVVMLL 67 (165)
T ss_dssp CTSEEEEES--SHHHHHHHHHH-HHCC-EEEEEE-TTCHHHHHHHHTT-EC-------CEHHHHH------HC-SEEEE-
T ss_pred CCCEEEEECC-ChHHHHHHHHH-HhCCCCEEEEecCCCcCHHHHHHCCCee-------ccHHHHH------hhCCEEEEe
Confidence 5789999997 99999999999 568999999998877 677888888732 2333332 257899988
Q ss_pred CCCccH-----HHHHHHhhccCceE-EeecccceeeeeEE
Q psy1959 240 VGGEDK-----TDLIRQKGAWAALT-FTNEKSLVNKVLEV 273 (296)
Q Consensus 240 ~g~~~~-----~~~~~~lg~~~g~~-~~~~~~~~~k~~~i 273 (296)
+-++.- +.....| +.+..+ +.....+.++.+..
T Consensus 68 ~PD~~q~~vy~~~I~p~l-~~G~~L~fahGfni~~~~i~p 106 (165)
T PF07991_consen 68 LPDEVQPEVYEEEIAPNL-KPGATLVFAHGFNIHYGLIKP 106 (165)
T ss_dssp S-HHHHHHHHHHHHHHHS--TT-EEEESSSHHHHCTTS--
T ss_pred CChHHHHHHHHHHHHhhC-CCCCEEEeCCcchhhcCcccC
Confidence 876433 3344456 555554 33445555555443
No 483
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=90.16 E-value=1.1 Score=40.14 Aligned_cols=43 Identities=16% Similarity=0.156 Sum_probs=34.3
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHh
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQ 205 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~ 205 (296)
++++++|+|+ ||.+.+++..+ ...|+ +++++.|+.+|.+.+.+
T Consensus 126 ~~k~vlilGa-GGaarAi~~aL-~~~g~~~i~i~nR~~~ka~~La~ 169 (283)
T PRK14027 126 KLDSVVQVGA-GGVGNAVAYAL-VTHGVQKLQVADLDTSRAQALAD 169 (283)
T ss_pred CCCeEEEECC-cHHHHHHHHHH-HHCCCCEEEEEcCCHHHHHHHHH
Confidence 4789999997 99999877777 34677 89999999888776653
No 484
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=90.01 E-value=1.2 Score=34.92 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=24.2
Q ss_pred CcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeC
Q psy1959 162 KQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCN 195 (296)
Q Consensus 162 g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~ 195 (296)
..+|+|.|+ |++|..++..+.+ .|. +++.+|.
T Consensus 2 ~~~v~iiG~-G~vGs~va~~L~~-~Gv~~i~lvD~ 34 (135)
T PF00899_consen 2 NKRVLIIGA-GGVGSEVAKNLAR-SGVGKITLVDD 34 (135)
T ss_dssp T-EEEEEST-SHHHHHHHHHHHH-HTTSEEEEEES
T ss_pred CCEEEEECc-CHHHHHHHHHHHH-hCCCceeecCC
Confidence 468999998 9999887776634 577 7888874
No 485
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=90.00 E-value=2.2 Score=36.41 Aligned_cols=34 Identities=24% Similarity=0.137 Sum_probs=26.7
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCC
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNS 196 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~ 196 (296)
...+|+|.|+ |++|..+++.+ ...|. +++.+|.+
T Consensus 27 ~~~~V~ViG~-GglGs~ia~~L-a~~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGA-GGLGSNIAVAL-ARSGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECc-CHHHHHHHHHH-HHcCCCeEEEEeCC
Confidence 4568999997 99998877777 44677 68888865
No 486
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=89.86 E-value=2 Score=39.48 Aligned_cols=79 Identities=13% Similarity=0.138 Sum_probs=45.4
Q ss_pred cEEEEEcCCCcHHHHHHHHHHHhCC---CEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEEC
Q psy1959 163 QTVLVTAAGGGLGLAAVDMATKIYK---AKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEA 239 (296)
Q Consensus 163 ~~vlI~Ga~g~vG~aa~~la~~~~g---~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~ 239 (296)
.+|+|.|++|.+|+..++++. ..+ .++..+.+..+.-+.+.-.+.+..+.... . . .+ .++|+||.|
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~-~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~--~--~---~~---~~vDvVf~A 70 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILE-ERNFPVDKLRLLASARSAGKELSFKGKELKVEDLT--T--F---DF---SGVDIALFS 70 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHH-hCCCCcceEEEEEccccCCCeeeeCCceeEEeeCC--H--H---HH---cCCCEEEEC
Confidence 479999999999999999994 333 35566655443333232122222221111 1 1 11 279999999
Q ss_pred CCCccHHHHHHHh
Q psy1959 240 VGGEDKTDLIRQK 252 (296)
Q Consensus 240 ~g~~~~~~~~~~l 252 (296)
.|..........+
T Consensus 71 ~g~g~s~~~~~~~ 83 (334)
T PRK14874 71 AGGSVSKKYAPKA 83 (334)
T ss_pred CChHHHHHHHHHH
Confidence 9985444433333
No 487
>PLN00203 glutamyl-tRNA reductase
Probab=89.82 E-value=2.9 Score=40.82 Aligned_cols=73 Identities=25% Similarity=0.315 Sum_probs=49.7
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHh-cCCcEEEEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQ-KGAWAALTFTNEKSLVNKVLEVSGGKYANVVFE 238 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld 238 (296)
.+.+|+|+|+ |.+|.++++.+ ...|+ +|+++.++.++.+.+.+ ++... +.... +. .+.+.. ..+|+||.
T Consensus 265 ~~kkVlVIGA-G~mG~~~a~~L-~~~G~~~V~V~nRs~era~~La~~~~g~~-i~~~~---~~-dl~~al--~~aDVVIs 335 (519)
T PLN00203 265 ASARVLVIGA-GKMGKLLVKHL-VSKGCTKMVVVNRSEERVAALREEFPDVE-IIYKP---LD-EMLACA--AEADVVFT 335 (519)
T ss_pred CCCEEEEEeC-HHHHHHHHHHH-HhCCCCeEEEEeCCHHHHHHHHHHhCCCc-eEeec---Hh-hHHHHH--hcCCEEEE
Confidence 3689999998 99999999988 45787 79999999888776654 43111 11111 11 122222 36899999
Q ss_pred CCCC
Q psy1959 239 AVGG 242 (296)
Q Consensus 239 ~~g~ 242 (296)
|++.
T Consensus 336 AT~s 339 (519)
T PLN00203 336 STSS 339 (519)
T ss_pred ccCC
Confidence 9987
No 488
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=89.75 E-value=0.79 Score=41.00 Aligned_cols=74 Identities=20% Similarity=0.107 Sum_probs=48.0
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHh-cCCcE-EEEcCCchhHHHHHHHHhCCCcccEEE
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQ-KGAWA-ALTFTNEKSLVNKVLEVSGGKYANVVF 237 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~~~g~d~vl 237 (296)
++++++|+|+ |+.+.+++..+ ...|+ +|+++.|+.+|.+.+.+ ++... ..... ..+.+.... ..+|+++
T Consensus 124 ~~k~vlvlGa-GGaarai~~aL-~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~----~~~~~~~~~--~~~DiVI 195 (282)
T TIGR01809 124 AGFRGLVIGA-GGTSRAAVYAL-ASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLE----GDSGGLAIE--KAAEVLV 195 (282)
T ss_pred CCceEEEEcC-cHHHHHHHHHH-HHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceecc----chhhhhhcc--cCCCEEE
Confidence 5789999997 99999988877 45787 89999999888776654 22111 11111 001111211 3689999
Q ss_pred ECCCC
Q psy1959 238 EAVGG 242 (296)
Q Consensus 238 d~~g~ 242 (296)
+|+..
T Consensus 196 naTp~ 200 (282)
T TIGR01809 196 STVPA 200 (282)
T ss_pred ECCCC
Confidence 99875
No 489
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=89.73 E-value=0.9 Score=40.66 Aligned_cols=31 Identities=23% Similarity=0.208 Sum_probs=24.2
Q ss_pred EEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCC
Q psy1959 165 VLVTAAGGGLGLAAVDMATKIYKAKVIGVCNS 196 (296)
Q Consensus 165 vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~ 196 (296)
|+|+|++|-+|..+++.+ ...|.+++++.++
T Consensus 2 ilVtGa~GfiG~~l~~~L-~~~g~~~v~~~~~ 32 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKAL-NDKGITDILVVDN 32 (308)
T ss_pred EEEecCCcHHHHHHHHHH-HhCCCceEEEecC
Confidence 799999999999999877 3468866655444
No 490
>PRK08618 ornithine cyclodeaminase; Validated
Probab=89.69 E-value=5 Score=36.62 Aligned_cols=87 Identities=9% Similarity=0.078 Sum_probs=54.3
Q ss_pred CCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHh-----cCCcEEEEcCCchhHHHHHHHHhCCCcc
Q psy1959 160 KEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQ-----KGAWAALTFTNEKSLVNKVLEVSGGKYA 233 (296)
Q Consensus 160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~i~~~~~~~g~ 233 (296)
+..++++|+|+ |..|.+.+..+....++ +|.+.++++++.+.+.+ ++.. +..+. ++.+.+ ...
T Consensus 125 ~~~~~v~iiGa-G~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~-~~~~~---~~~~~~------~~a 193 (325)
T PRK08618 125 EDAKTLCLIGT-GGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTE-IYVVN---SADEAI------EEA 193 (325)
T ss_pred CCCcEEEEECC-cHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCc-EEEeC---CHHHHH------hcC
Confidence 35678999997 99998776554244566 88888888888765543 2332 22222 222222 368
Q ss_pred cEEEECCCCccHHHHHHHhhccCceE
Q psy1959 234 NVVFEAVGGEDKTDLIRQKGAWAALT 259 (296)
Q Consensus 234 d~vld~~g~~~~~~~~~~lg~~~g~~ 259 (296)
|+|+.|..+...... +.+ +.+..+
T Consensus 194 DiVi~aT~s~~p~i~-~~l-~~G~hV 217 (325)
T PRK08618 194 DIIVTVTNAKTPVFS-EKL-KKGVHI 217 (325)
T ss_pred CEEEEccCCCCcchH-Hhc-CCCcEE
Confidence 999999998433333 777 555444
No 491
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=89.59 E-value=2.4 Score=40.99 Aligned_cols=69 Identities=14% Similarity=0.182 Sum_probs=46.5
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCCcEEEEcCCchhHHHHHHHHhCCCcccEEEEC
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEA 239 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~ 239 (296)
.+.+++|.|+ |++|.+++..+ ...|++|++.++++++.+.+.+ .+. ..+... + +.+ -..+|++++|
T Consensus 331 ~~k~vlIiGa-GgiG~aia~~L-~~~G~~V~i~~R~~~~~~~la~~~~~-~~~~~~---~----~~~---l~~~DiVIna 397 (477)
T PRK09310 331 NNQHVAIVGA-GGAAKAIATTL-ARAGAELLIFNRTKAHAEALASRCQG-KAFPLE---S----LPE---LHRIDIIINC 397 (477)
T ss_pred CCCEEEEEcC-cHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHhcc-ceechh---H----hcc---cCCCCEEEEc
Confidence 5789999996 99999988888 4578999999988877766543 221 111111 1 111 1368899998
Q ss_pred CCC
Q psy1959 240 VGG 242 (296)
Q Consensus 240 ~g~ 242 (296)
+..
T Consensus 398 tP~ 400 (477)
T PRK09310 398 LPP 400 (477)
T ss_pred CCC
Confidence 765
No 492
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=89.58 E-value=2.8 Score=39.57 Aligned_cols=82 Identities=20% Similarity=0.206 Sum_probs=53.5
Q ss_pred HHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHH-HhcCCcEEEEcCCchhHHHHHHHH
Q psy1959 150 QIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLI-RQKGAWAALTFTNEKSLVNKVLEV 227 (296)
Q Consensus 150 ~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~i~~~ 227 (296)
.....+..+--.+.+++|+|+ |-+|..++... ...|. +|+++.|+.+|...+ +++|+. ....+ .+...
T Consensus 166 v~lA~~~~~~L~~~~vlvIGA-Gem~~lva~~L-~~~g~~~i~IaNRT~erA~~La~~~~~~-~~~l~-------el~~~ 235 (414)
T COG0373 166 VELAKRIFGSLKDKKVLVIGA-GEMGELVAKHL-AEKGVKKITIANRTLERAEELAKKLGAE-AVALE-------ELLEA 235 (414)
T ss_pred HHHHHHHhcccccCeEEEEcc-cHHHHHHHHHH-HhCCCCEEEEEcCCHHHHHHHHHHhCCe-eecHH-------HHHHh
Confidence 333334434237889999998 88888877777 44674 888899888887644 567742 22221 22222
Q ss_pred hCCCcccEEEECCCCc
Q psy1959 228 SGGKYANVVFEAVGGE 243 (296)
Q Consensus 228 ~~~~g~d~vld~~g~~ 243 (296)
. ..+|+||.+++.+
T Consensus 236 l--~~~DvVissTsa~ 249 (414)
T COG0373 236 L--AEADVVISSTSAP 249 (414)
T ss_pred h--hhCCEEEEecCCC
Confidence 2 2589999999974
No 493
>PLN03013 cysteine synthase
Probab=89.53 E-value=3.2 Score=39.46 Aligned_cols=58 Identities=22% Similarity=0.255 Sum_probs=46.0
Q ss_pred HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC---CcchHHHHHhcCCcEEEE
Q psy1959 155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN---SEDKTDLIRQKGAWAALT 213 (296)
Q Consensus 155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~---~~~~~~~~~~~g~~~~~~ 213 (296)
+...+++|+..+|...+|..|++.+..| +.+|.+++++.. +++|.+.++.+|+..++.
T Consensus 167 ~~G~l~pG~~~VVeaSSGN~G~ALA~~a-~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v 227 (429)
T PLN03013 167 QKGFISPGKSVLVEPTSGNTGIGLAFIA-ASRGYRLILTMPASMSMERRVLLKAFGAELVLT 227 (429)
T ss_pred HcCCcCCCCcEEEEECCcHHHHHHHHHH-HHcCCCEEEEECCCCcHHHHHHHHHcCCEEEEE
Confidence 5566788877778888899999999999 678998777754 566888888889876543
No 494
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=89.45 E-value=2 Score=42.28 Aligned_cols=75 Identities=13% Similarity=0.094 Sum_probs=54.5
Q ss_pred cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959 163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG 242 (296)
Q Consensus 163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~ 242 (296)
++++|.|. |.+|+..++.. +..|.++++++.++++.+.+++.|...+. .+. .-.+.+++ .+-+.+|.++-+.++
T Consensus 418 ~hiiI~G~-G~~G~~la~~L-~~~g~~vvvId~d~~~~~~~~~~g~~~i~-GD~--~~~~~L~~-a~i~~a~~viv~~~~ 491 (558)
T PRK10669 418 NHALLVGY-GRVGSLLGEKL-LAAGIPLVVIETSRTRVDELRERGIRAVL-GNA--ANEEIMQL-AHLDCARWLLLTIPN 491 (558)
T ss_pred CCEEEECC-ChHHHHHHHHH-HHCCCCEEEEECCHHHHHHHHHCCCeEEE-cCC--CCHHHHHh-cCccccCEEEEEcCC
Confidence 67899997 99999999998 55789999999999999999988764433 221 11223333 334578888887776
Q ss_pred c
Q psy1959 243 E 243 (296)
Q Consensus 243 ~ 243 (296)
+
T Consensus 492 ~ 492 (558)
T PRK10669 492 G 492 (558)
T ss_pred h
Confidence 3
No 495
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=89.34 E-value=1 Score=38.71 Aligned_cols=70 Identities=20% Similarity=0.204 Sum_probs=44.7
Q ss_pred CCcHHHHHHHHHHHhCCCEEEEEeCCcch----HHHHH-hcCCcEEEE--cCCchhHHHHHHHHhCC--CcccEEEECCC
Q psy1959 171 GGGLGLAAVDMATKIYKAKVIGVCNSEDK----TDLIR-QKGAWAALT--FTNEKSLVNKVLEVSGG--KYANVVFEAVG 241 (296)
Q Consensus 171 ~g~vG~aa~~la~~~~g~~Vi~~~~~~~~----~~~~~-~~g~~~~~~--~~~~~~~~~~i~~~~~~--~g~d~vld~~g 241 (296)
++++|.++++-+ ...|++|++++++.++ .+.+. +.+.. ++. ..+..+....+.+.... ..+|+++++.|
T Consensus 5 s~GiG~aia~~l-~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~-~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV~~a~ 82 (241)
T PF13561_consen 5 SSGIGRAIARAL-AEEGANVILTDRNEEKLADALEELAKEYGAE-VIQCDLSDEESVEALFDEAVERFGGRIDILVNNAG 82 (241)
T ss_dssp TSHHHHHHHHHH-HHTTEEEEEEESSHHHHHHHHHHHHHHTTSE-EEESCTTSHHHHHHHHHHHHHHHCSSESEEEEEEE
T ss_pred CCChHHHHHHHH-HHCCCEEEEEeCChHHHHHHHHHHHHHcCCc-eEeecCcchHHHHHHHHHHHhhcCCCeEEEEeccc
Confidence 389999988888 4589999999999887 33333 34543 433 23323333333333211 47999998776
Q ss_pred C
Q psy1959 242 G 242 (296)
Q Consensus 242 ~ 242 (296)
.
T Consensus 83 ~ 83 (241)
T PF13561_consen 83 I 83 (241)
T ss_dssp S
T ss_pred c
Confidence 4
No 496
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.32 E-value=2.7 Score=40.22 Aligned_cols=71 Identities=15% Similarity=0.212 Sum_probs=48.7
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc-h----HHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccE
Q psy1959 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED-K----TDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANV 235 (296)
Q Consensus 161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~-~----~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~ 235 (296)
.+++|+|+|. |..|+++++++ +..|++|++.|.++. . .+.+++.|......... .+.+ .++|+
T Consensus 13 ~~~~i~v~G~-G~sG~a~a~~L-~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~----~~~~------~~~dl 80 (458)
T PRK01710 13 KNKKVAVVGI-GVSNIPLIKFL-VKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENY----LDKL------DGFDV 80 (458)
T ss_pred cCCeEEEEcc-cHHHHHHHHHH-HHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCC----hHHh------ccCCE
Confidence 4678999997 99999999999 568999999997543 1 23466667644332211 1112 25799
Q ss_pred EEECCCCc
Q psy1959 236 VFEAVGGE 243 (296)
Q Consensus 236 vld~~g~~ 243 (296)
|+-+.|-.
T Consensus 81 VV~Spgi~ 88 (458)
T PRK01710 81 IFKTPSMR 88 (458)
T ss_pred EEECCCCC
Confidence 99988864
No 497
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=89.32 E-value=1.3 Score=37.72 Aligned_cols=74 Identities=19% Similarity=0.267 Sum_probs=41.2
Q ss_pred EEEEEcCCCcHHHHHHHHHHHh-CCCEEEEEeCCcchHHHHHhcCCc-EEEEcCCchhHHHHHHHHhCCCcccEEEECCC
Q psy1959 164 TVLVTAAGGGLGLAAVDMATKI-YKAKVIGVCNSEDKTDLIRQKGAW-AALTFTNEKSLVNKVLEVSGGKYANVVFEAVG 241 (296)
Q Consensus 164 ~vlI~Ga~g~vG~aa~~la~~~-~g~~Vi~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g 241 (296)
+++|+|++|++|...++.+.+. .+..++...+++... ....... ...+..+ .+..+.+.+.. .++|++|++.|
T Consensus 2 ~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~Dls~-~~~~~~~~~~~--~~id~li~~aG 76 (235)
T PRK09009 2 NILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD--FQHDNVQWHALDVTD-EAEIKQLSEQF--TQLDWLINCVG 76 (235)
T ss_pred EEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc--cccCceEEEEecCCC-HHHHHHHHHhc--CCCCEEEECCc
Confidence 6899999999999977766332 245666655543321 1110111 1123333 22222333332 37999999998
Q ss_pred C
Q psy1959 242 G 242 (296)
Q Consensus 242 ~ 242 (296)
.
T Consensus 77 ~ 77 (235)
T PRK09009 77 M 77 (235)
T ss_pred c
Confidence 6
No 498
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=89.09 E-value=2.4 Score=36.80 Aligned_cols=33 Identities=21% Similarity=0.164 Sum_probs=25.7
Q ss_pred CcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCC
Q psy1959 162 KQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNS 196 (296)
Q Consensus 162 g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~ 196 (296)
..+|+|.|. |++|..++..+ ...|. +++.+|.+
T Consensus 11 ~~~VlVvG~-GGvGs~va~~L-ar~GVg~i~LvD~D 44 (231)
T cd00755 11 NAHVAVVGL-GGVGSWAAEAL-ARSGVGKLTLIDFD 44 (231)
T ss_pred CCCEEEECC-CHHHHHHHHHH-HHcCCCEEEEECCC
Confidence 468999998 99999888777 34677 88877753
No 499
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=89.01 E-value=2.9 Score=37.67 Aligned_cols=77 Identities=14% Similarity=0.056 Sum_probs=47.9
Q ss_pred cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch-HHHHHhc-CCcEEEEcCCchhHHHHHHHHhCCCcccEEEECC
Q psy1959 163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK-TDLIRQK-GAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAV 240 (296)
Q Consensus 163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~-~~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~ 240 (296)
.+|||+|++|=+|.-++..+ ...|.+|+++|.-... .+.+... +.-..-+..+ . +.+.+......+|.||.+.
T Consensus 1 ~~iLVtGGAGYIGSHtv~~L-l~~G~~vvV~DNL~~g~~~~v~~~~~~f~~gDi~D-~---~~L~~vf~~~~idaViHFA 75 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQL-LKTGHEVVVLDNLSNGHKIALLKLQFKFYEGDLLD-R---ALLTAVFEENKIDAVVHFA 75 (329)
T ss_pred CeEEEecCcchhHHHHHHHH-HHCCCeEEEEecCCCCCHHHhhhccCceEEecccc-H---HHHHHHHHhcCCCEEEECc
Confidence 36999999999997766555 3479999999974433 2333222 2222233444 2 2344444445899999988
Q ss_pred CCcc
Q psy1959 241 GGED 244 (296)
Q Consensus 241 g~~~ 244 (296)
+...
T Consensus 76 a~~~ 79 (329)
T COG1087 76 ASIS 79 (329)
T ss_pred cccc
Confidence 8643
No 500
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=88.97 E-value=2.4 Score=34.47 Aligned_cols=44 Identities=18% Similarity=0.153 Sum_probs=35.1
Q ss_pred cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCC
Q psy1959 163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGA 208 (296)
Q Consensus 163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~ 208 (296)
.+|.++|. |..|...++-+ ...|.+|++.++++++.+.+.+.|+
T Consensus 2 ~~Ig~IGl-G~mG~~~a~~L-~~~g~~v~~~d~~~~~~~~~~~~g~ 45 (163)
T PF03446_consen 2 MKIGFIGL-GNMGSAMARNL-AKAGYEVTVYDRSPEKAEALAEAGA 45 (163)
T ss_dssp BEEEEE---SHHHHHHHHHH-HHTTTEEEEEESSHHHHHHHHHTTE
T ss_pred CEEEEEch-HHHHHHHHHHH-HhcCCeEEeeccchhhhhhhHHhhh
Confidence 46889997 99998877776 4479999999999999998887774
Done!