RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1959
(296 letters)
>4eye_A Probable oxidoreductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.10A
{Mycobacterium abscessus}
Length = 342
Score = 146 bits (370), Expect = 1e-41
Identities = 54/195 (27%), Positives = 91/195 (46%), Gaps = 16/195 (8%)
Query: 49 INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
+ D L+ G K P VPG E +G V + ++ GD+V+A
Sbjct: 60 VCFPDYLMTKGEYQLKMEPPFVPGIETAGVVRSAPEGSG-----------IKPGDRVMAF 108
Query: 109 NKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVT 168
N + G++++ V +++ P ++ A +L +Y T ++R +L+ +TVLV
Sbjct: 109 NF--IGGYAERVAVAPSNILPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVL 166
Query: 169 AAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVS 228
A GG+G AA+ +A K AKVI V N T+ ++ GA L + V E +
Sbjct: 167 GAAGGIGTAAIQIA-KGMGAKVIAVVNRTAATEFVKSVGADIVLPLE--EGWAKAVREAT 223
Query: 229 GGKYANVVFEAVGGE 243
GG ++V + +GG
Sbjct: 224 GGAGVDMVVDPIGGP 238
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative
quinone oxidoreductase, unknown function, PSI-2; 1.76A
{Bacillus thuringiensis}
Length = 340
Score = 143 bits (364), Expect = 6e-41
Identities = 47/204 (23%), Positives = 85/204 (41%), Gaps = 18/204 (8%)
Query: 49 INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVL 106
IN SDL+ G+ + LP +PG+E G V V V +G +VL
Sbjct: 44 INPSDLIPITGAYAHRIPLPNIPGYEGVGIVENVG------------AFVSRELIGKRVL 91
Query: 107 ALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVL 166
L + + + V IP+ + AA + + TA + + L+ +L
Sbjct: 92 PLRG--EGTWQEYVKTSADFVVPIPDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLL 149
Query: 167 VTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLE 226
V A G +G ++ +I ++I V + T+ + + GA + + L V+E
Sbjct: 150 VNACGSAIGHLFAQLS-QILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTA-PLYETVME 207
Query: 227 VSGGKYANVVFEAVGGEDKTDLIR 250
++ G A+ +++GG D +L
Sbjct: 208 LTNGIGADAAIDSIGGPDGNELAF 231
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain
dehydrogenase/reductase, oxidoreductase, 2-ENOY
thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Length = 357
Score = 143 bits (364), Expect = 8e-41
Identities = 47/208 (22%), Positives = 80/208 (38%), Gaps = 21/208 (10%)
Query: 49 INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVL 106
IN SD+ + G+ P LP V G E V+ V +V L+ GD V+
Sbjct: 66 INPSDINMIQGNYGLLPELPAVGGNEGVAQVVAVG------------SNVTGLKPGDWVI 113
Query: 107 ALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVL 166
N L + + V + ++P + + AA+L + TA + +L+ +V+
Sbjct: 114 PANAGL-GTWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVI 172
Query: 167 VTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKT----DLIRQKGAWAALTFTNEKSLVN 222
A+ G+G A + +A + I V D ++ GA +T E
Sbjct: 173 QNASNSGVGQAVIQIA-AALGLRTINVVRDRPDIQKLSDRLKSLGAEHVIT-EEELRRPE 230
Query: 223 KVLEVSGGKYANVVFEAVGGEDKTDLIR 250
+ VGG+ T+L+R
Sbjct: 231 MKNFFKDMPQPRLALNCVGGKSSTELLR 258
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold,
structural GE joint center for structural genomics,
JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Length = 349
Score = 142 bits (361), Expect = 2e-40
Identities = 37/196 (18%), Positives = 69/196 (35%), Gaps = 13/196 (6%)
Query: 49 INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
IN SD+ G GFE GT++ D + VG +V
Sbjct: 61 INPSDVAFIKGQYGQPRVKGRPAGFEGVGTIVAGGD---------EPYAKSLVGKRVAFA 111
Query: 109 NKELLHG-FSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLV 167
G +++ V + + + E A++ + TA +F K + ++ ++
Sbjct: 112 TGLSNWGSWAEYAVAEAAACIPLLDTVRDEDGAAMIVNPLTAIAMFDI-VKQEGEKAFVM 170
Query: 168 TAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEV 227
TA L + +A K + I +++ L++ GA L + EV
Sbjct: 171 TAGASQLCKLIIGLA-KEEGFRPIVTVRRDEQIALLKDIGAAHVLNEKAP-DFEATLREV 228
Query: 228 SGGKYANVVFEAVGGE 243
+ + +AV G
Sbjct: 229 MKAEQPRIFLDAVTGP 244
>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase,
quinon reduction, structural genomics, structural
genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP:
b.35.1.2 c.2.1.1
Length = 351
Score = 132 bits (334), Expect = 2e-36
Identities = 48/200 (24%), Positives = 93/200 (46%), Gaps = 23/200 (11%)
Query: 49 INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVL 106
+N + + +G+ KP LP PG + +G + V ++ + GD+V
Sbjct: 69 VNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVG------------DNASAFKKGDRVF 116
Query: 107 ALNKELLH--GFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQ-IVFSRHAKLKEKQ 163
G+++ + + V+K+PEK+ F+ A++ Y TA + A +K +
Sbjct: 117 TS---STISGGYAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHS-ACVKAGE 172
Query: 164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNK 223
+VLV A GG+GLAA +A + Y K++G +E+ ++ Q GA + ++K
Sbjct: 173 SVLVHGASGGVGLAACQIA-RAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREV-NYIDK 230
Query: 224 VLEVSGGKYANVVFEAVGGE 243
+ + G K +++ E +
Sbjct: 231 IKKYVGEKGIDIIIEMLANV 250
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 1iyz_A 2cf2_D
Length = 302
Score = 126 bits (320), Expect = 7e-35
Identities = 47/195 (24%), Positives = 77/195 (39%), Gaps = 33/195 (16%)
Query: 49 INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
+N +D L+ G+ + P +PG E G V G + AL
Sbjct: 37 LNFADHLMRLGAYLTRLHPPFIPGMEVVGVV---------------------EGRRYAAL 75
Query: 109 NKELLHG-FSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLV 167
+ G +++ V + +PE ++ E AA+ S+ TA + R A+ + + VLV
Sbjct: 76 ---VPQGGLAERVAVPKGALLPLPEGLSPEEAAAFPVSFLTAYLALKR-AQARPGEKVLV 131
Query: 168 TAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEV 227
AA G LG AAV +A + +V+ + +K L GA A T+
Sbjct: 132 QAAAGALGTAAVQVA-RAMGLRVLAAASRPEKLALPLALGAEEAATYAEV------PERA 184
Query: 228 SGGKYANVVFEAVGG 242
++V E G
Sbjct: 185 KAWGGLDLVLEVRGK 199
Score = 42.5 bits (101), Expect = 9e-05
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 1 VRIDIQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTI 40
V + ++ LN +D L+ G+ + P +PG E G +
Sbjct: 28 VVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVV 67
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2;
oxidoreductase, quinone oxidoreductase, medium-chain
dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens}
PDB: 2x1h_A* 2x7h_A* 2wek_A*
Length = 362
Score = 127 bits (320), Expect = 2e-34
Identities = 55/195 (28%), Positives = 85/195 (43%), Gaps = 17/195 (8%)
Query: 49 INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
+N+SD+ G D P GFE G V+ + + S VG V +
Sbjct: 65 VNASDINYSAGRYDPSVKPPFDIGFEGIGEVVALGLSAS---------ARYTVGQAVAYM 115
Query: 109 NKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVT 168
F++ VV + +P +L S +TA I L E + VLVT
Sbjct: 116 A---PGSFAEYTVVPASIATPVPSVK--PEYLTLLVSGTTAYISLKELGGLSEGKKVLVT 170
Query: 169 AAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVS 228
AA GG G A+ ++ K K VIG C+S++K+ ++ G + + E V VL+
Sbjct: 171 AAAGGTGQFAMQLS-KKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEP--VGTVLKQE 227
Query: 229 GGKYANVVFEAVGGE 243
+ +VV+E+VGG
Sbjct: 228 YPEGVDVVYESVGGA 242
>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase;
2.10A {Homo sapiens}
Length = 349
Score = 124 bits (314), Expect = 1e-33
Identities = 52/200 (26%), Positives = 92/200 (46%), Gaps = 25/200 (12%)
Query: 49 INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVL 106
+N DL++ G+ D P PLVPGFE SG V + + V ++GD+V+
Sbjct: 42 LNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALG------------DSVKGYEIGDRVM 89
Query: 107 ALNKELLHG-FSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTA-QIVFSRHAKLKEKQT 164
A + + +++ V+KIP+ M+F AA+ ++ TA ++F A L+E +
Sbjct: 90 AF---VNYNAWAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEV-ANLREGMS 145
Query: 165 VLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKV 224
VLV +AGGG+G A + + S K + I+ F V +V
Sbjct: 146 VLVHSAGGGVGQAVAQLC-STVPNVTVFGTASTFKHEAIKDS---VTHLFDRNADYVQEV 201
Query: 225 LEVSGGKYANVVFEAVGGED 244
+ + ++V + + G++
Sbjct: 202 KRI-SAEGVDIVLDCLCGDN 220
>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET:
NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*
Length = 325
Score = 120 bits (303), Expect = 3e-32
Identities = 54/179 (30%), Positives = 89/179 (49%), Gaps = 13/179 (7%)
Query: 65 PTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHT 124
P LP G E +G V V D E +VGD+V L +S+ V+
Sbjct: 55 PFLPSGLGAEGAGVVEAVGD----------EVTRFKVGDRVAYGTGPL-GAYSEVHVLPE 103
Query: 125 NDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATK 184
++ K+ + ++FE AA+L T Q + + ++K + +L AA GG+G A A K
Sbjct: 104 ANLVKLADSVSFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWA-K 162
Query: 185 IYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE 243
AK+IG +S +K + GAW + +++E + +VLE++ GK VV++ VG +
Sbjct: 163 ALGAKLIGTVSSPEKAAHAKALGAWETIDYSHE-DVAKRVLELTDGKKCPVVYDGVGQD 220
>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP:
b.35.1.2 c.2.1.1
Length = 327
Score = 120 bits (302), Expect = 6e-32
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 13/179 (7%)
Query: 65 PTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHT 124
P+LP G E +G V +V ++ GD+V + L +S +
Sbjct: 55 PSLPSGLGTEAAGIVSKVGS----------GVKHIKAGDRV-VYAQSALGAYSSVHNIIA 103
Query: 125 NDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATK 184
+ +P ++FE AA+ T + + ++K + L AA GG+GL A A K
Sbjct: 104 DKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWA-K 162
Query: 185 IYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE 243
AK+IG + K + GAW + + E LV ++ E++GGK VV+++VG +
Sbjct: 163 ALGAKLIGTVGTAQKAQSALKAGAWQVINYREE-DLVERLKEITGGKKVRVVYDSVGRD 220
>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases,
QUIN oxidoreductase, oxidative stress response; HET:
NAP; 2.50A {Homo sapiens} PDB: 2oby_A*
Length = 354
Score = 120 bits (303), Expect = 7e-32
Identities = 47/198 (23%), Positives = 84/198 (42%), Gaps = 19/198 (9%)
Query: 49 INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
+N +DL+ G D P + G E SG V E+ ++GD +AL
Sbjct: 61 LNRADLMQRQGQYDPPPGASNILGLEASGHVAELGPGCQGH---------WKIGDTAMAL 111
Query: 109 NKELLHG--FSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTA-QIVFSRHAKLKEKQTV 165
L G + V + IPE +T AA++ +++ TA Q++ ++ V
Sbjct: 112 ----LPGGGQAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLV-GNVQAGDYV 166
Query: 166 LVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVL 225
L+ A G+G AA+ + ++ A + S+ K + + GA A + E L
Sbjct: 167 LIHAGLSGVGTAAIQLT-RMAGAIPLVTAGSQKKLQMAEKLGAAAGFNYKKE-DFSEATL 224
Query: 226 EVSGGKYANVVFEAVGGE 243
+ + G N++ + +GG
Sbjct: 225 KFTKGAGVNLILDCIGGS 242
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific]
1,mitochondrial; oxidoreductase, thioester reduction,
fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2
c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Length = 364
Score = 115 bits (291), Expect = 3e-30
Identities = 44/272 (16%), Positives = 83/272 (30%), Gaps = 66/272 (24%)
Query: 1 VRIDIQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGS 60
V + +N SD+ G +KP G
Sbjct: 36 VIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFG--------------------------- 68
Query: 61 GDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVLALNKELLHGFSD 118
G E VI+V +V L+ GD V+ + +
Sbjct: 69 ---TTEPAAPCGNEGLFEVIKVG------------SNVSSLEAGDWVIPSHVNF-GTWRT 112
Query: 119 QCVVHTNDVFKI-----------PEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLV 167
+ + +D K+ P +T A+++ + TA ++ + + KL + +
Sbjct: 113 HALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFI 172
Query: 168 -TAAGGGLGLAAVDMATKIYKAKVIGVC----NSEDKTDLIRQKGAWAALTFTNE--KSL 220
+G A + K+ I V N ++ +++ GA +T +
Sbjct: 173 QNGGTSAVGKYASQIG-KLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREF 231
Query: 221 VNKVLEV--SGGKYANVVFEAVGGEDKTDLIR 250
+ E G A + VGG+ T + R
Sbjct: 232 GPTIKEWIKQSGGEAKLALNCVGGKSSTGIAR 263
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein
structure initiati structural genomics research
consortium, nysgrc; 2.45A {Rhizobium etli}
Length = 353
Score = 113 bits (286), Expect = 2e-29
Identities = 41/198 (20%), Positives = 80/198 (40%), Gaps = 21/198 (10%)
Query: 49 INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
+N D+ GS + G E SG ++ V VGDKV L
Sbjct: 67 VNRPDIAQRQGSYPPPKDASPILGLELSGEIVGVGP----------GVSGYAVGDKVCGL 116
Query: 109 NKELLHG--FSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTA-QIVFSRHAKLKEKQTV 165
+G +++ C++ + P+ AA+L +++ T +F A L E ++V
Sbjct: 117 ----ANGGAYAEYCLLPAGQILPFPKGYDAVKAAALPETFFTVWANLFQM-AGLTEGESV 171
Query: 166 LVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVL 225
L+ G+G A+ +A + + A+V S K + + GA + + +E +
Sbjct: 172 LIHGGTSGIGTTAIQLA-RAFGAEVYATAGSTGKCEACERLGAKRGINYRSE-DFAAVIK 229
Query: 226 EVSGGKYANVVFEAVGGE 243
G+ +++ + +G
Sbjct: 230 AE-TGQGVDIILDMIGAA 246
>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase,
oxidoreductase; 1.30A {Burkholderia SP}
Length = 333
Score = 113 bits (284), Expect = 2e-29
Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 19/183 (10%)
Query: 65 PTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVLALNKELLHGFSDQCVV 122
P+V GFE + V EV V VG++V L +S + +
Sbjct: 58 GEPPIVVGFEAAAVVEEVG------------PGVTDFTVGERVCTCLPPL-GAYSQERLY 104
Query: 123 HTNDVFKIPEKMTFEHA--ASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVD 180
+ K+P+ + + A L TAQ + + K+K VL+ AA GG+G V
Sbjct: 105 PAEKLIKVPKDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVP 164
Query: 181 MATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAV 240
A + A VIG ++E+K + R+ G + ++ + V E++GGK +VV++++
Sbjct: 165 WA-RHLGATVIGTVSTEEKAETARKLGCHHTINYSTQ-DFAEVVREITGGKGVDVVYDSI 222
Query: 241 GGE 243
G +
Sbjct: 223 GKD 225
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone
oxidoreductases, NADPH, cytoplasm and oxidoreductase;
HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Length = 334
Score = 112 bits (283), Expect = 3e-29
Identities = 46/190 (24%), Positives = 82/190 (43%), Gaps = 23/190 (12%)
Query: 60 SGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVLALNKELLHGFS 117
G P V G E SGTV+ + V +VGD+V ++ F+
Sbjct: 56 KGIYPCEKPYVLGREASGTVVAKG------------KGVTNFEVGDQVAYIS---NSTFA 100
Query: 118 DQCVVH-TNDVFKIPEKMTFEHAASLADS---YSTAQIVFSRHAKLKEKQTVLVTAAGGG 173
+ V K+P+ + E A TA + +K+ VL+ AA GG
Sbjct: 101 QYSKISSQGPVMKLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGG 160
Query: 174 LGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYA 233
+GL + K+ A I V ++++K + ++ GA + + E ++ +VL+ + GK
Sbjct: 161 VGLILNQLL-KMKGAHTIAVASTDEKLKIAKEYGAEYLINASKE-DILRQVLKFTNGKGV 218
Query: 234 NVVFEAVGGE 243
+ F++VG +
Sbjct: 219 DASFDSVGKD 228
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural
genomics, NPPSFA, natio project on protein structural
and functional analyses; 2.30A {Thermus thermophilus}
Length = 343
Score = 111 bits (281), Expect = 6e-29
Identities = 54/223 (24%), Positives = 93/223 (41%), Gaps = 43/223 (19%)
Query: 49 INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVL 106
+N D+ + G K LP V G + SG V V V GD+V+
Sbjct: 39 LNHLDVWVRKGVASPKLPLPHVLGADGSGVVDAVG------------PGVEGFAPGDEVV 86
Query: 107 ALNKELLH-------------------------GFSDQCVVHTNDVFKIPEKMTFEHAAS 141
+++ V+ ++ P+ ++FE AA+
Sbjct: 87 INPGLSCGRCERCLAGEDNLCPRYQILGEHRHGTYAEYVVLPEANLAPKPKNLSFEEAAA 146
Query: 142 LADSYSTA-QIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKT 200
+ ++ TA Q+V + ++ VLV AAG G+ +AA+ +A K++ A+VI SEDK
Sbjct: 147 IPLTFLTAWQMVVDK-LGVRPGDDVLVMAAGSGVSVAAIQIA-KLFGARVIATAGSEDKL 204
Query: 201 DLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE 243
+ GA + +T+ +V ++GGK A+ V + G
Sbjct: 205 RRAKALGADETVNYTHP-DWPKEVRRLTGGKGADKVVDHTGAL 246
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Length = 321
Score = 110 bits (278), Expect = 1e-28
Identities = 54/210 (25%), Positives = 86/210 (40%), Gaps = 29/210 (13%)
Query: 49 INSSDLLLYNGSGDAKP----TLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVG 102
+N D NGSG LP G++FSG VIE+ DV + +G
Sbjct: 45 LNPIDYKTRNGSGFVAKKLKNNLPSGLGYDFSGEVIELG------------SDVNNVNIG 92
Query: 103 DKVLALNKELLHG--FSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLK 160
DKV+ + H +++ + + + EK++F AASL + TA A++K
Sbjct: 93 DKVMGIAGFPDHPCCYAEYVCASPDTIIQKLEKLSFLQAASLPTAGLTALQAL-NQAEVK 151
Query: 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSL 220
+ VL+ A GG+G A+ +A K VI S+ ++ GA + + E
Sbjct: 152 QGDVVLIHAGAGGVGHLAIQLA-KQKGTTVITTA-SKRNHAFLKALGAEQCINYHEE--- 206
Query: 221 VNKVLEVSGGKYANVVFEAVGGEDKTDLIR 250
L + V + VGG+ I
Sbjct: 207 --DFLLAISTPV-DAVIDLVGGDVGIQSID 233
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE NDP; 1.70A
{Ralstonia eutropha}
Length = 379
Score = 111 bits (278), Expect = 2e-28
Identities = 49/250 (19%), Positives = 86/250 (34%), Gaps = 26/250 (10%)
Query: 1 VRIDIQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGS 60
V I I+ LN SDL L G+ D + + SGT + R+ S
Sbjct: 35 VLIRIEASPLNPSDLGLLFGAAD-------MSTAKASGTAERPIVTARVPEG----AMRS 83
Query: 61 GDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQC 120
+ + G E +G V+E + K +A +S
Sbjct: 84 MAGRLDASMPVGNEGAGVVVEA----------GSSPAAQALMGKTVAAIG--GAMYSQYR 131
Query: 121 VVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVD 180
+ + +PE T AS + TA + +L+ ++ TAA LG
Sbjct: 132 CIPADQCLVLPEGATPADGASSFVNPLTALGMV-ETMRLEGHSALVHTAAASNLGQMLNQ 190
Query: 181 MATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAV 240
+ K++ + +++ DL++ +GA + + + E A + F+A
Sbjct: 191 IC-LKDGIKLVNIVRKQEQADLLKAQGAVHVCN-AASPTFMQDLTEALVSTGATIAFDAT 248
Query: 241 GGEDKTDLIR 250
GG I
Sbjct: 249 GGGKLGGQIL 258
>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II,
alcohol dehydrogenase superf structural genomics; 1.96A
{Novosphingobium aromaticivorans}
Length = 343
Score = 106 bits (267), Expect = 6e-27
Identities = 46/202 (22%), Positives = 82/202 (40%), Gaps = 25/202 (12%)
Query: 49 INSSDLLLYNGSG-DAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKV 105
N D + G A+ LP + G + +GTV+ V +V +VGD V
Sbjct: 44 TNPLDAKIRAGEAPHAQQPLPAILGMDLAGTVVAVG------------PEVDSFRVGDAV 91
Query: 106 LALNKELLH---GFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTA-QIVFSRHAKLKE 161
L + + V + P +T A+ L + TA + + R A++++
Sbjct: 92 FGLTGGVGGLQGTHAQFAAVDARLLASKPAALTMRQASVLPLVFITAWEGLVDR-AQVQD 150
Query: 162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLV 221
QTVL+ GGG+G A+ +A A+V + +R GA +
Sbjct: 151 GQTVLIQGGGGGVGHVAIQIA-LARGARVFATA-RGSDLEYVRDLGATPID---ASREPE 205
Query: 222 NKVLEVSGGKYANVVFEAVGGE 243
+ E + G+ ++V++ +GG
Sbjct: 206 DYAAEHTAGQGFDLVYDTLGGP 227
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase,
cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A
{Streptomyces SP} PDB: 4a10_A
Length = 447
Score = 106 bits (267), Expect = 2e-26
Identities = 46/276 (16%), Positives = 80/276 (28%), Gaps = 56/276 (20%)
Query: 1 VRIDIQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGS 60
V + + ++N + + + G
Sbjct: 65 VLVAVMASSINYNTVWSAMFEPIPTFHFLKQNARQ----------------------GGW 102
Query: 61 GDAKPTLPLVPGFEFSGTVIEV--------------ADTKSSSTEEDDEEDVLQVGDKVL 106
V G + SG V+ +E +G +
Sbjct: 103 ATRHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHPAHVDEQEPATHGDGMLGTEQR 162
Query: 107 ALNKELLHG-FSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTA--QIVFSRHAKLKEKQ 163
A E G ++ VV + + P +T+E AA TA +V R A++K+
Sbjct: 163 AWGFETNFGGLAEYGVVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGD 222
Query: 164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAAL----------- 212
VL+ A GGLG A+ K + V +S K +R G +
Sbjct: 223 IVLIWGASGGLGSYAIQFV-KNGGGIPVAVVSSAQKEAAVRALGCDLVINRAELGITDDI 281
Query: 213 -----TFTNEKSLVNKVLEVSGGKYANVVFEAVGGE 243
+ K++ G+ ++VFE G
Sbjct: 282 ADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRV 317
>3krt_A Crotonyl COA reductase; structural genomics, protein structure
initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces
coelicolor} PDB: 3hzz_A
Length = 456
Score = 106 bits (266), Expect = 3e-26
Identities = 55/289 (19%), Positives = 92/289 (31%), Gaps = 82/289 (28%)
Query: 1 VRIDIQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGS 60
+ + ++N + + + G
Sbjct: 73 ALVAVMASSVNYNSVHTSIFEPLSTFGFLERYGRV-----------------------SD 109
Query: 61 GDAKPTLPL-VPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVLA---------- 107
+ LP V G + +G V+ V Q GD+V+A
Sbjct: 110 LAKRHDLPYHVIGSDLAGVVLRTG------------PGVNAWQAGDEVVAHCLSVELESS 157
Query: 108 --------------LNKELLHG-FSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTA--Q 150
E G ++ +V +N + P+ +++E AA+ STA Q
Sbjct: 158 DGHNDTMLDPEQRIWGFETNFGGLAEIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQ 217
Query: 151 IVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGA-- 208
+V A +K+ VL+ A GGLG A A A I V +S K ++ R GA
Sbjct: 218 LVSRNGAGMKQGDNVLIWGASGGLGSYATQFA-LAGGANPICVVSSPQKAEICRAMGAEA 276
Query: 209 --------------WAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE 243
K ++ E++GG+ ++VFE G E
Sbjct: 277 IIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGRE 325
>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc,
oxidoreductase; HET: MSE; 1.85A {Sulfolobus
solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A
1nvg_A 3i4c_A 2eer_A*
Length = 347
Score = 103 bits (259), Expect = 1e-25
Identities = 48/229 (20%), Positives = 82/229 (35%), Gaps = 52/229 (22%)
Query: 52 SDLLLYNG-------SGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVG 102
SD+ + G D LP+ G E +G + EV ++V G
Sbjct: 40 SDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVG------------DEVVGYSKG 87
Query: 103 DKV--------------------LALNKELLH-----GFSDQCVVHTNDVFKIPEKMTFE 137
D V L + L +++ +V ++
Sbjct: 88 DLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKYMYKLRRLNAV 147
Query: 138 HAASLADSYSTAQIVFS--RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN 195
AA L S T + R A L +T+LV AGGGLG AV +A + A +IGV
Sbjct: 148 EAAPLTCSGITT---YRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDV 204
Query: 196 SEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGED 244
E+ + ++ GA + + + + ++ ++ K + V + E
Sbjct: 205 REEAVEAAKRAGADYVINAS-MQDPLAEIRRITESKGVDAVIDLNNSEK 252
Score = 36.4 bits (85), Expect = 0.007
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 1 VRIDIQCCALNSSDLLLYNG-------SGDAKPTLPLVPGFEFSGTIIE 42
V I ++ + SD+ + G D LP+ G E +G I E
Sbjct: 28 VLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEE 76
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure
initiative, PSI-biolo YORK structural genomics research
consortium; 2.20A {Sinorhizobium meliloti 1021}
Length = 363
Score = 102 bits (257), Expect = 3e-25
Identities = 45/220 (20%), Positives = 78/220 (35%), Gaps = 41/220 (18%)
Query: 49 INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVL 106
+N D L+ P VP + SG V V + V + GD+V+
Sbjct: 65 LNYRDKLVLETGMGLDLAFPFVPASDMSGVVEAVG------------KSVTRFRPGDRVI 112
Query: 107 AL-------------NKELLH---------GFSDQCVVHTNDVFKIPEKMTFEHAASLAD 144
+ + + S+ V+ P+ + A++L
Sbjct: 113 STFAPGWLDGLRPGTGRTPAYETLGGAHPGVLSEYVVLPEGWFVAAPKSLDAAEASTLPC 172
Query: 145 SYSTA-QIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI 203
+ TA + + L+ V+V GG L + +A K A+VI +S +K D
Sbjct: 173 AGLTAWFALVEK-GHLRAGDRVVVQGTGGV-ALFGLQIA-KATGAEVIVTSSSREKLDRA 229
Query: 204 RQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE 243
GA + E V +V ++G + A+ + E GG
Sbjct: 230 FALGADHGINRLEED-WVERVYALTGDRGADHILEIAGGA 268
>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide,
receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}
Length = 375
Score = 96.3 bits (240), Expect = 5e-23
Identities = 52/199 (26%), Positives = 84/199 (42%), Gaps = 25/199 (12%)
Query: 59 GSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVLALNKELLHG- 115
PL G + SG V+E DV + GD+V A G
Sbjct: 86 HVKIKGEEFPLTLGRDVSGVVMECG------------LDVKYFKPGDEVWAAVPPWKQGT 133
Query: 116 FSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEK----QTVLVTAAG 171
S+ VV N+V P+ +T AASL TA ++ L +K + VL+ A
Sbjct: 134 LSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGAS 193
Query: 172 GGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGK 231
GG+G A+ + K + A V VC S+D ++L+R+ GA + + + + ++ K
Sbjct: 194 GGVGTFAIQVM-KAWDAHVTAVC-SQDASELVRKLGADDVIDYKSG----SVEEQLKSLK 247
Query: 232 YANVVFEAVGGEDKTDLIR 250
+ + + VGG +T
Sbjct: 248 PFDFILDNVGGSTETWAPD 266
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH,
oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora
spinosa}
Length = 795
Score = 92.1 bits (229), Expect = 5e-21
Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 22/156 (14%)
Query: 49 INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVL 106
+N D L+ G +L G E +G V+E V L GD+V+
Sbjct: 250 VNFRDALIALGMYPGVASL----GSEGAGVVVETG------------PGVTGLAPGDRVM 293
Query: 107 ALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVL 166
+ F V V +IP +F AAS+ + TA A L+ +++L
Sbjct: 294 GMIP---KAFGPLAVADHRMVTRIPAGWSFARAASVPIVFLTAYYALVDLAGLRPGESLL 350
Query: 167 VTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDL 202
V +A GG+G+AA+ +A + A+V + + +
Sbjct: 351 VHSAAGGVGMAAIQLA-RHLGAEVYATASEDKWQAV 385
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain
alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus
solfataricus}
Length = 344
Score = 89.2 bits (222), Expect = 1e-20
Identities = 41/222 (18%), Positives = 85/222 (38%), Gaps = 43/222 (19%)
Query: 52 SDLLLYNGS-GDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVL---- 106
+DL ++ G LP++ G E +GT++EV + ++ GD V+
Sbjct: 43 TDLRVWKGVEAKQGFRLPIILGHENAGTIVEVGELAK-----------VKKGDNVVVYAT 91
Query: 107 -------------------ALNKELLH--GFSDQCVVHTNDVFKIPEKMTFEHAASLADS 145
+ GFS+ +V ++ ++ AA LAD+
Sbjct: 92 WGDLTCRYCREGKFNICKNQIIPGQTTNGGFSEYMLVKSSRWLVKLNSLSPVEAAPLADA 151
Query: 146 YSTA--QIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKI-YKAKVIGVCNSEDKTDL 202
+T+ I + K + V++ GGL + + + + ++G+ S+ D
Sbjct: 152 GTTSMGAIRQALPFISKFAEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDF 211
Query: 203 IRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGED 244
+ GA K + + +++ G A++ + VG E+
Sbjct: 212 ALELGADYVS---EMKDAESLINKLTDGLGASIAIDLVGTEE 250
Score = 34.9 bits (81), Expect = 0.022
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 1 VRIDIQCCALNSSDLLLYNGS-GDAKPTLPLVPGFEFSGTIIE 42
V I I + +DL ++ G LP++ G E +GTI+E
Sbjct: 31 VLIRIGGAGVCRTDLRVWKGVEAKQGFRLPIILGHENAGTIVE 73
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold,
oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB:
2xaa_A*
Length = 345
Score = 86.9 bits (216), Expect = 1e-19
Identities = 48/227 (21%), Positives = 77/227 (33%), Gaps = 49/227 (21%)
Query: 52 SDLLLYNGSGDAKPT-LPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVL-- 106
SD+ + + LPL G E GTV E+ E V VGD V
Sbjct: 40 SDIFVMDMPAAQYAYGLPLTLGHEGVGTVAELG------------EGVTGFGVGDAVAVY 87
Query: 107 ---------------------ALNKELLH-------GFSDQCVVHTNDVFKIPEKMTFEH 138
A + + ++ +V + +
Sbjct: 88 GPWGCGACHACARGRENYCTRAADLGITPPGLGSPGSMAEYMIVDSARHLVPIGDLDPVA 147
Query: 139 AASLADSYSTAQI-VFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE 197
AA L D+ T + L T +V GGLG + + + A+VI V +
Sbjct: 148 AAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGV-GGLGHVGIQILRAVSAARVIAVDLDD 206
Query: 198 DKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGED 244
D+ L R+ G A + + + E++GG+ A VF+ VG +
Sbjct: 207 DRLALAREVG--ADAAVKSGAGAADAIRELTGGQGATAVFDFVGAQS 251
Score = 31.0 bits (71), Expect = 0.36
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 1 VRIDIQCCALNSSDLLLYNGSGDAKPT-LPLVPGFEFSGTIIE 42
+ + + L SD+ + + LPL G E GT+ E
Sbjct: 28 ILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLGHEGVGTVAE 70
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle,
zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP:
b.35.1.2 c.2.1.1
Length = 359
Score = 86.6 bits (215), Expect = 1e-19
Identities = 57/226 (25%), Positives = 84/226 (37%), Gaps = 48/226 (21%)
Query: 52 SDLLLYNGS--GDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVL- 106
+DL L G +P LP G E G + EVA E V L+ GD V+
Sbjct: 56 TDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVA------------EGVEGLEKGDPVIL 103
Query: 107 ----------------------ALNKELLH--GFSDQCVVHTNDVFKIPEKMTFEH---A 139
L GF++ V K+P+ ++ E
Sbjct: 104 HPAVTDGTCLACRAGEDMHCENLEFPGLNIDGGFAEFMRTSHRSVIKLPKDISREKLVEM 163
Query: 140 ASLADSYSTAQI-VFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED 198
A LAD+ TA V L V + GG LG AV + + A VI + E+
Sbjct: 164 APLADAGITAYRAVKKAARTLYPGAYVAIVGVGG-LGHIAVQLLKVMTPATVIALDVKEE 222
Query: 199 KTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGED 244
K L + GA + + V +V+E++ G+ NV + VG +
Sbjct: 223 KLKLAERLGADHVVDAR--RDPVKQVMELTRGRGVNVAMDFVGSQA 266
Score = 31.9 bits (73), Expect = 0.25
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 1 VRIDIQCCALNSSDLLLYNGS--GDAKPTLPLVPGFEFSGTIIE 42
V + I + +DL L G +P LP G E G I E
Sbjct: 44 VIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEE 87
>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann
fold, NAD binding, oxidoreductase; HET: NAP; 1.74A
{Aspergillus terreus} PDB: 3b6z_A* 3b70_A*
Length = 371
Score = 80.1 bits (198), Expect = 2e-17
Identities = 40/200 (20%), Positives = 66/200 (33%), Gaps = 36/200 (18%)
Query: 65 PTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVLAL-----NKELLHG-F 116
T G +++GTV+ V DV +QVGD+V + G F
Sbjct: 60 ATPWAFLGTDYAGTVVAVG------------SDVTHIQVGDRVYGAQNEMCPRTPDQGAF 107
Query: 117 SDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVF------------SRHAKLKEKQT 164
S V KIP+ ++FE AA+L STA + + +
Sbjct: 108 SQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAMKLLGLPLPSPSADQPPTHSKPVY 167
Query: 165 VLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKV 224
VLV + M ++ I C S DL + +GA + +L +
Sbjct: 168 VLVYGGSTATATVTMQML-RLSGYIPIATC-SPHNFDLAKSRGAEEVFDYRAP-NLAQTI 224
Query: 225 LEVSGGKYANVVFEAVGGED 244
+ + + +
Sbjct: 225 RTYTKNNLR-YALDCITNVE 243
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2
c.2.1.1
Length = 380
Score = 80.0 bits (198), Expect = 3e-17
Identities = 52/228 (22%), Positives = 92/228 (40%), Gaps = 46/228 (20%)
Query: 52 SDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL--- 108
SD+ ++ G D + LP++ G E +G V+EV + D ++L+ GD ++
Sbjct: 57 SDVHMFRGE-DPRVPLPIILGHEGAGRVVEVN-----GEKRDLNGELLKPGDLIVWNRGI 110
Query: 109 ----------------------------NKELLH---GFSDQCVVHT-NDVFKIPEKMTF 136
E H +S V+ DV K+ EK
Sbjct: 111 TCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSHIVLDPETDVLKVSEKDDL 170
Query: 137 EHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCN 195
+ A S +TA F + + +TV++ AG LGL V + + A VI +
Sbjct: 171 DVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGP-LGLFGV-VIARSLGAENVIVIAG 228
Query: 196 SEDKTDLIRQKGAWAAL--TFTNEKSLVNKVLEVSGGKYANVVFEAVG 241
S ++ L + GA L T+ + +++++ G+ A+ + EA G
Sbjct: 229 SPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEATG 276
Score = 33.0 bits (76), Expect = 0.089
Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 1 VRIDIQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIE 42
+ ++I + SD+ ++ G D + LP++ G E +G ++E
Sbjct: 45 ILVEILSAGVCGSDVHMFRGE-DPRVPLPIILGHEGAGRVVE 85
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics,
metal-binding, oxidoreductase, PSI-2, protein structure
initiative; 2.09A {Thermotoga maritima}
Length = 404
Score = 77.4 bits (191), Expect = 2e-16
Identities = 52/230 (22%), Positives = 81/230 (35%), Gaps = 48/230 (20%)
Query: 52 SDLLLYNGSGDAKPT------LPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKV 105
SD+ + + P+ G EFSG V+E ++G+ V
Sbjct: 70 SDVHMAQTDEEGYILYPGLTGFPVTLGHEFSGVVVEAG----PEAINRRTNKRFEIGEPV 125
Query: 106 LA--------------------LNKELL----HG-FSDQCVVHTNDVFKIPE-------K 133
A N L G F++ V + + E
Sbjct: 126 CAEEMLWCGHCRPCAEGFPNHCENLNELGFNVDGAFAEYVKVDAKYAWSLRELEGVYEGD 185
Query: 134 MTFEHAASLADSYSTA-QIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVI 191
F + L + S A V R ++ V++ G +GLAAV + K A KVI
Sbjct: 186 RLFLAGS-LVEPTSVAYNAVIVRGGGIRPGDNVVILGGGP-IGLAAVAIL-KHAGASKVI 242
Query: 192 GVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVG 241
SE + +L ++ GA + T E + V VL+ + G A + EA G
Sbjct: 243 LSEPSEVRRNLAKELGADHVIDPTKE-NFVEAVLDYTNGLGAKLFLEATG 291
Score = 33.5 bits (77), Expect = 0.071
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 1 VRIDIQCCALNSSDLLLYNGSGDAKPT------LPLVPGFEFSGTIIE 42
+ I ++ C + SD+ + + P+ G EFSG ++E
Sbjct: 58 IIIKVKACGICGSDVHMAQTDEEGYILYPGLTGFPVTLGHEFSGVVVE 105
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc,
PSI-biology, NEW YORK structura genomics research
consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Length = 370
Score = 76.9 bits (190), Expect = 3e-16
Identities = 46/221 (20%), Positives = 75/221 (33%), Gaps = 51/221 (23%)
Query: 52 SDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKV---- 105
+D L +G + P P+ G EF G V+E V + G ++
Sbjct: 62 TDRHLLHGEFPSTP--PVTLGHEFCGIVVEAG------------SAVRDIAPGARITGDP 107
Query: 106 ----------------LALNKELL----HG-FSDQCVVHTNDVFKIPEKMTFEHAASLAD 144
L N + G F++ +V F+IP + H A +
Sbjct: 108 NISCGRCPQCQAGRVNLCRNLRAIGIHRDGGFAEYVLVPRKQAFEIPLTLDPVHGA-FCE 166
Query: 145 SYSTA-QIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDL 202
+ V + +K TV + G +GL V +A ++ A VI K L
Sbjct: 167 PLACCLHGV--DLSGIKAGSTVAILGG-GVIGLLTVQLA-RLAGATTVILSTRQATKRRL 222
Query: 203 IRQKGAWAALTFTNEKSLVNKVLEVSG--GKYANVVFEAVG 241
+ GA A + + +V + G +VV E G
Sbjct: 223 AEEVGATATVD-PSAGDVVEAIAGPVGLVPGGVDVVIECAG 262
Score = 39.1 bits (92), Expect = 0.001
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 1 VRIDIQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIE 42
+ + ++ C + +D L +G + P P+ G EF G ++E
Sbjct: 50 LLVKVEACGICGTDRHLLHGEFPSTP--PVTLGHEFCGIVVE 89
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal
binding-site; 1.87A {Escherichia coli}
Length = 346
Score = 76.5 bits (189), Expect = 3e-16
Identities = 46/219 (21%), Positives = 73/219 (33%), Gaps = 49/219 (22%)
Query: 52 SDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKV---- 105
SDL +G P+ G EFSG + V V L GD V
Sbjct: 40 SDLPRIFKNGAHYY--PITLGHEFSGYIDAVG------------SGVDDLHPGDAVACVP 85
Query: 106 ----------------LALNKELL----HG-FSDQCVVHTNDVFKIPEKMTFEHAASLAD 144
+ + G F++ VV +VF +P M E A +
Sbjct: 86 LLPCFTCPECLKGFYSQCAKYDFIGSRRDGGFAEYIVVKRKNVFALPTDMPIEDGA-FIE 144
Query: 145 SYSTA-QIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDL 202
+ A+ E + V++ A G +GL A+ A A V + S +K L
Sbjct: 145 PITVGLHAF--HLAQGCENKNVIIIGA-GTIGLLAIQCA-VALGAKSVTAIDISSEKLAL 200
Query: 203 IRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVG 241
+ GA ++E S + ++ ++ E G
Sbjct: 201 AKSFGAMQTFN-SSEMSAPQMQSVLRELRFNQLILETAG 238
Score = 34.9 bits (81), Expect = 0.026
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 1 VRIDIQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIE 42
VR+ I L SDL +G P+ G EFSG I
Sbjct: 28 VRVKIASSGLCGSDLPRIFKNGAHYY--PITLGHEFSGYIDA 67
>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics,
PSI, protein STRU initiative; 2.66A {Mycobacterium
tuberculosis} SCOP: c.2.1.1
Length = 198
Score = 71.8 bits (177), Expect = 3e-15
Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 2/117 (1%)
Query: 127 VFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIY 186
V IP+ + AA+ +Y TA +L + VL+ +A GG+G+AAV +A K+
Sbjct: 4 VVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIA-KMI 62
Query: 187 KAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE 243
A++ S+ K +++ + G + + +++LE++ G +VV ++ GE
Sbjct: 63 GARIYTTAGSDAKREMLSRLGV-EYVGDSRSVDFADEILELTDGYGVDVVLNSLAGE 118
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium, nysgrc; 1.99A {Rhizobium etli}
Length = 363
Score = 73.9 bits (182), Expect = 3e-15
Identities = 38/194 (19%), Positives = 71/194 (36%), Gaps = 25/194 (12%)
Query: 60 SGDAKP-TLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVLALNKELLHG- 115
T V G++ +G V V DV + GD+V + G
Sbjct: 73 RSTPPDGTDWKVIGYDAAGIVSAVG------------PDVTLFRPGDEVFYAGSIIRPGT 120
Query: 116 FSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTA-QIVFSRHAKLKEK-----QTVLVTA 169
++ +V V + P+ + + AA+L + TA + F R + + +L+
Sbjct: 121 NAEFHLVDERIVGRKPKTLDWAEAAALPLTSITAWEAFFDR-LDVNKPVPGAAPAILIVG 179
Query: 170 AGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSG 229
GG+G AV +A + VI + + + ++ GA + + L +V +
Sbjct: 180 GAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDHSKP--LAAEVAALGL 237
Query: 230 GKYANVVFEAVGGE 243
G A V +
Sbjct: 238 GAPAFVFSTTHTDK 251
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol
dehydrogenase superfamily protein, ALCO dehydrogenase
groes-like domain; 1.55A {Shewanella oneidensis}
Length = 315
Score = 73.4 bits (181), Expect = 4e-15
Identities = 37/193 (19%), Positives = 70/193 (36%), Gaps = 30/193 (15%)
Query: 61 GDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVLALNKELLHG-FS 117
+ VPG + +G +++V V +G +V HG F+
Sbjct: 52 NPINWSNGHVPGVDGAGVIVKVG------------AKVDSKMLGRRVAYHTSLKRHGSFA 99
Query: 118 DQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLA 177
+ V++T+ V +P+ ++FE AA+L TA F L +++ VL+ G +
Sbjct: 100 EFTVLNTDRVMTLPDNLSFERAAALPCPLLTAWQAF-EKIPLTKQREVLIVGF-GAVNNL 157
Query: 178 AVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVF 237
M V V + L ++G + + K +F
Sbjct: 158 LTQML-NNAGYVVDLVS-ASLSQALAAKRG--VRHLYREPSQVTQKY---------FAIF 204
Query: 238 EAVGGEDKTDLIR 250
+AV ++ L+
Sbjct: 205 DAVNSQNAAALVP 217
>3fbg_A Putative arginate lyase; structural genomics, unknown function,
PSI-2, protein structure initiative; 1.60A
{Staphylococcus haemolyticus}
Length = 346
Score = 73.0 bits (180), Expect = 6e-15
Identities = 42/192 (21%), Positives = 72/192 (37%), Gaps = 25/192 (13%)
Query: 65 PTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVLALNKELLHG-FSDQCV 121
P V GF+ G V V +V GD V +G ++ +
Sbjct: 57 SKAPRVLGFDAIGVVESVG------------NEVTMFNQGDIVYYSGSPDQNGSNAEYQL 104
Query: 122 VHTNDVFKIPEKMTFEHAASLADSYSTA-QIVFSR-----HAKLKEKQTVLVTAAGGGLG 175
++ V K P+ ++ E A SL + TA + +F + E +T+L+ GG+G
Sbjct: 105 INERLVAKAPKNISAEQAVSLPLTGITAYETLFDVFGISRNRNENEGKTLLIINGAGGVG 164
Query: 176 LAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANV 235
A +A K Y +VI + + + ++ GA L L+N+ +
Sbjct: 165 SIATQIA-KAYGLRVITTASRNETIEWTKKMGADIVLNHKES--LLNQFKTQGIELV-DY 220
Query: 236 VFEAVGGEDKTD 247
VF + D
Sbjct: 221 VFCTFNTDMYYD 232
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii
OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus
horikoshii} PDB: 2dfv_A* 3gfb_A*
Length = 348
Score = 73.0 bits (180), Expect = 7e-15
Identities = 50/223 (22%), Positives = 90/223 (40%), Gaps = 54/223 (24%)
Query: 52 SDLLLYNG--SGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKV-- 105
+DL +Y ++ P + G E +G V+E+ V ++VGD V
Sbjct: 44 TDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEIG------------PGVEGIEVGDYVSV 91
Query: 106 ------------------LALNKELL----HG-FSDQCVVHTNDVFKIPEKMTFEHAASL 142
+ N ++ G F++ VV +++K P+ + E+A L
Sbjct: 92 ETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGVFAEYAVVPAQNIWKNPKSIPPEYAT-L 150
Query: 143 ADSYSTAQIVFSRHAKLKEK---QTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSED 198
+ A L ++VL+T A G LGL + +A K A VI S+
Sbjct: 151 QEPLGNAV-----DTVLAGPISGKSVLITGA-GPLGLLGIAVA-KASGAYPVIVSEPSDF 203
Query: 199 KTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVG 241
+ +L ++ GA + E +V +V++++ G +V E G
Sbjct: 204 RRELAKKVGADYVINPFEE-DVVKEVMDITDGNGVDVFLEFSG 245
Score = 35.3 bits (82), Expect = 0.020
Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 1 VRIDIQCCALNSSDLLLYNG--SGDAKPTLPLVPGFEFSGTIIE 42
V I + ++ +DL +Y ++ P + G E +G ++E
Sbjct: 32 VLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVE 75
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc
coordination, intramolec disulfide bonds,
oxidoreductase; HET: 8ID; 2.44A {Saccharomyces
cerevisiae}
Length = 347
Score = 72.2 bits (178), Expect = 1e-14
Identities = 49/213 (23%), Positives = 76/213 (35%), Gaps = 54/213 (25%)
Query: 52 SDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKV---- 105
+DL ++G LPLV G E +G V+ + E+V ++GD
Sbjct: 45 TDLHAWHGDWPLPVKLPLVGGHEGAGVVVGMG------------ENVKGWKIGDYAGIKW 92
Query: 106 -----------------LALNKELLH-----GFSDQCVVHTNDVFKIPEKMTFEHAASLA 143
+ +L F IP+ A +
Sbjct: 93 LNGSCMACEYCELGNESNCPHADLSGYTHDGSFQQYATADAVQAAHIPQGTDLAQVAPI- 151
Query: 144 DSYSTAQI-VFS--RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA---KVIGVCNSE 197
A I V+ + A L V ++ A GGLG +A + KA +V+G+ E
Sbjct: 152 ---LCAGITVYKALKSANLMAGHWVAISGAAGGLG----SLAVQYAKAMGYRVLGIDGGE 204
Query: 198 DKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGG 230
K +L R G + FT EK +V VL+ + G
Sbjct: 205 GKEELFRSIGGEVFIDFTKEKDIVGAVLKATDG 237
Score = 32.9 bits (76), Expect = 0.11
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 1 VRIDIQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIE 42
+ I+++ + +DL ++G LPLV G E +G ++
Sbjct: 33 LLINVKYSGVCHTDLHAWHGDWPLPVKLPLVGGHEGAGVVVG 74
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose
reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2
c.2.1.1
Length = 352
Score = 71.5 bits (176), Expect = 2e-14
Identities = 56/228 (24%), Positives = 85/228 (37%), Gaps = 55/228 (24%)
Query: 52 SDLLLYN--GSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVLA 107
SD+ Y D P+V G E SGTV++V ++V L+ GD+V A
Sbjct: 43 SDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVG------------KNVKHLKKGDRV-A 89
Query: 108 LNKELLHGFSDQC--------------------------VVHTND-VFKIPEKMTFEHAA 140
+ + C VH D K+P+ ++ E A
Sbjct: 90 VEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCHKLPDNVSLEEGA 149
Query: 141 SLADSYSTA-QIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK 199
L + S R A ++ TVLV A G +GL +V A K Y A V+ S +
Sbjct: 150 -LLEPLSVGVHAC--RRAGVQLGTTVLVIGA-GPIGLVSVLAA-KAYGAFVVCTARSPRR 204
Query: 200 TDLIRQKGAWAALTF----TNEKSLVNKVLEVSGGKYANVVFEAVGGE 243
++ + GA L E S++ ++ G NV + G E
Sbjct: 205 LEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDL-PNVTIDCSGNE 251
Score = 35.3 bits (82), Expect = 0.018
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 1 VRIDIQCCALNSSDLLLYN--GSGDAKPTLPLVPGFEFSGTIIE 42
V + + + SD+ Y D P+V G E SGT+++
Sbjct: 31 VLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVK 74
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 72.6 bits (178), Expect = 3e-14
Identities = 31/149 (20%), Positives = 64/149 (42%), Gaps = 6/149 (4%)
Query: 98 VLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHA 157
G +V+ + G + ++ + +++P T E AAS+ Y+TA
Sbjct: 1606 RDASGRRVMGMVPA--EGLATSVLLLQHATWEVPSTWTLEEAASVPIVYTTAYYSLVVRG 1663
Query: 158 KLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGA-WAALTFTN 216
+++ ++VL+ + GG+G AA+ +A +V S +K ++ + F N
Sbjct: 1664 RMQPGESVLIHSGSGGVGQAAIAIALS-RGCRVFTTVGSAEKRAYLQARFPQLDETCFAN 1722
Query: 217 EKSL--VNKVLEVSGGKYANVVFEAVGGE 243
+ VL + GK ++V ++ E
Sbjct: 1723 SRDTSFEQHVLRHTAGKGVDLVLNSLAEE 1751
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 71.3 bits (175), Expect = 3e-14
Identities = 36/233 (15%), Positives = 65/233 (27%), Gaps = 61/233 (26%)
Query: 52 SDLLLYNG----SGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKV-- 105
+D + NG S K LV G E G V E GD V
Sbjct: 41 ADREIVNGKLTLSTLPKGKDFLVLGHEAIGVVEESYHG-------------FSQGDLVMP 87
Query: 106 ------------------LALNKEL-------LHG-FSDQCVVHTNDVFKIPEKMTFE-- 137
E + G + + KIP+ +
Sbjct: 88 VNRRGCGICRNCLVGRPDFCETGEFGEAGIHKMDGFMREWWYDDPKYLVKIPKSIEDIGI 147
Query: 138 ---------HAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA 188
+ V++ + VLV G +G+ + + Y
Sbjct: 148 LAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGT-GPIGVLFTLLF-RTYGL 205
Query: 189 KVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVG 241
+V + N + T++ + + N + +K+ + G +V+ +A G
Sbjct: 206 EVW-MANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGK--FDVIIDATG 255
Score = 31.6 bits (72), Expect = 0.27
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 1 VRIDIQCCALNSSDLLLYNG----SGDAKPTLPLVPGFEFSGTIIE 42
++I + +D + NG S K LV G E G + E
Sbjct: 29 IKIRTIYNGICGADREIVNGKLTLSTLPKGKDFLVLGHEAIGVVEE 74
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial
alcohol dehydrogenase, domain exchange, chimera,
metal-binding; 1.40A {Thermoanaerobacter brockii} PDB:
2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A*
3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Length = 352
Score = 66.4 bits (163), Expect = 1e-12
Identities = 46/229 (20%), Positives = 84/229 (36%), Gaps = 56/229 (24%)
Query: 52 SDL-LLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVLA- 107
SD+ ++ G+ + ++ G E G V+EV +V + GD+V+
Sbjct: 39 SDIHTVFEGAIGERH--NMILGHEAVGEVVEVGS------------EVKDFKPGDRVVVP 84
Query: 108 ------LNKELLHGFSDQCV-------------------VHTND----VFKIPEKMTFEH 138
E+ G+ H ND + +P+++ E
Sbjct: 85 AITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVNDADMNLAHLPKEIPLEA 144
Query: 139 AASLADSYSTAQIVFS--RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCN 195
A + D +T F A +K TV V G +GL +V A ++ V +
Sbjct: 145 AVMIPDMMTTG---FHGAELANIKLGDTVCVIGIGP-VGLMSV-AGANHLGAGRIFAVGS 199
Query: 196 SEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGED 244
+ D+ + GA + + N +V ++L+ + GK + V A G
Sbjct: 200 RKHCCDIALEYGATDIINYKNG-DIVEQILKATDGKGVDKVVIAGGDVH 247
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A
{Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A
1pl6_A* 3qe3_A
Length = 356
Score = 66.5 bits (163), Expect = 1e-12
Identities = 51/226 (22%), Positives = 79/226 (34%), Gaps = 52/226 (23%)
Query: 52 SDLLLYN--GSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVLA 107
SD+ + G+ P+V G E SGTV +V V L+ GD+V A
Sbjct: 46 SDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVG------------SSVKHLKPGDRV-A 92
Query: 108 LNKELLHGFSDQC--------------------------VVHTND-VFKIPEKMTFEHAA 140
+ + C H +K+P+ +TFE A
Sbjct: 93 IEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGA 152
Query: 141 SLADSYSTA-QIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK 199
L + S R + VLV A G +G+ + +A + A+V+ S +
Sbjct: 153 -LIEPLSVGIHAC--RRGGVTLGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATR 208
Query: 200 TDLIRQKGAWAALTFTNE--KSLVNKVLEVSGGKYANVVFEAVGGE 243
++ GA L + E + + KV G K V E G E
Sbjct: 209 LSKAKEIGADLVLQISKESPQEIARKVEGQLGCK-PEVTIECTGAE 253
Score = 34.9 bits (81), Expect = 0.022
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 1 VRIDIQCCALNSSDLLLYN--GSGDAKPTLPLVPGFEFSGTIIE 42
V + + + SD+ + G+ P+V G E SGT+ +
Sbjct: 34 VLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEK 77
>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase;
HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB:
2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*
Length = 357
Score = 65.8 bits (161), Expect = 2e-12
Identities = 40/232 (17%), Positives = 67/232 (28%), Gaps = 62/232 (26%)
Query: 52 SDLLLYNGS--GDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKV---- 105
+D + G G + LV G E G V++ DT+ L+ GD V
Sbjct: 40 TDHEVIAGGHGGFPEGEDHLVLGHEAVGVVVDPNDTE------------LEEGDIVVPTV 87
Query: 106 -------------------------LALNKELLHG-FSDQCVVHTNDVFKIPEKMTFEHA 139
HG S+ + +IP
Sbjct: 88 RRPPASGTNEYFERDQPDMAPDGMYFERGIVGAHGYMSEFFTSPEKYLVRIPRSQA--EL 145
Query: 140 ASLADSYSTA-----QIVFSRHAKLKEKQTVLVTAAGG-GLGLAAVDMATKIYKAKVIGV 193
L + S SR A + + V G GL A+ + +
Sbjct: 146 GFLIEPISITEKALEHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCL 205
Query: 194 CN---SEDKTDLIRQKGAWAALTFTN-EKSLVNKVLEVSGGKYANVVFEAVG 241
+ D+I + A T+ + ++ V V +V + ++EA G
Sbjct: 206 GRRDRPDPTIDIIEELDA----TYVDSRQTPVEDVPDVYEQ--MDFIYEATG 251
Score = 33.0 bits (76), Expect = 0.092
Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 1 VRIDIQCCALNSSDLLLYNGS--GDAKPTLPLVPGFEFSGTIIE 42
+ + +D + G G + LV G E G +++
Sbjct: 28 ALVRTLRVGVCGTDHEVIAGGHGGFPEGEDHLVLGHEAVGVVVD 71
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase,
structural genomics, NPPSFA; HET: MES; 2.50A {Thermus
thermophilus} PDB: 2ejv_A*
Length = 343
Score = 64.5 bits (158), Expect = 5e-12
Identities = 50/221 (22%), Positives = 80/221 (36%), Gaps = 51/221 (23%)
Query: 52 SDLLLYNGS--GDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKV-- 105
+DL ++ + PLV G EFSG V V V QVGD V
Sbjct: 40 TDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVG------------PGVRRPQVGDHVSL 87
Query: 106 ------------------LALNKELL----HG-FSDQCVVHTNDVFKIPEKMTFEHAASL 142
+ LN ++L G F++ VV + + P+ + FE AA +
Sbjct: 88 ESHIVCHACPACRTGNYHVCLNTQILGVDRDGGFAEYVVVPAENAWVNPKDLPFEVAA-I 146
Query: 143 ADSYSTA-QIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKT 200
+ + A V ++VL+T A G +GL A + + A ++ + +
Sbjct: 147 LEPFGNAVHTV--YAGSGVSGKSVLITGA-GPIGLMAAMVV-RASGAGPILVSDPNPYRL 202
Query: 201 DLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVG 241
R E+ L+ V V+G V+ E G
Sbjct: 203 AFARPYADRLVN--PLEEDLLEVVRRVTGSG-VEVLLEFSG 240
>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural
genomics, protein structure initiative, PSI; 2.70A
{Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*
Length = 330
Score = 62.3 bits (152), Expect = 2e-11
Identities = 52/210 (24%), Positives = 88/210 (41%), Gaps = 23/210 (10%)
Query: 49 INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
IN D L G+ PL+ G + +GTV+ D + GD+V+A
Sbjct: 43 INYKDGLAGKAGGNIVREYPLILGIDAAGTVVSSNDPR------------FAEGDEVIAT 90
Query: 109 NKEL--LH--GFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSR---HAKLKE 161
+ EL G S+ V + + +P+ ++ + A + TA + R + E
Sbjct: 91 SYELGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPE 150
Query: 162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLV 221
K +VLVT A GG+G AV M K V+ + + D ++Q GA ++ +
Sbjct: 151 KGSVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLKQLGASEVISREDVYDGT 209
Query: 222 NKVLEVSGGKYANVVFEAVGGEDKTDLIRQ 251
K L ++ V + VGG+ L+ +
Sbjct: 210 LKALS--KQQWQGAV-DPVGGKQLASLLSK 236
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer;
2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 3pii_A
Length = 339
Score = 62.6 bits (153), Expect = 2e-11
Identities = 53/210 (25%), Positives = 82/210 (39%), Gaps = 50/210 (23%)
Query: 52 SDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKV---- 105
+DL +G KP LPL+PG E G V EV V L+VGD+V
Sbjct: 40 TDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVG------------PGVTHLKVGDRVGIPW 87
Query: 106 -----------------LALNKELLH-----GFSDQCVVHTNDVFKIPEKMTFEHAASLA 143
L +++ G+++ C + V KIP+ ++FE AA +
Sbjct: 88 LYSACGHCDYCLSGQETLCEHQKNAGYSVDGGYAEYCRAAADYVVKIPDNLSFEEAAPIF 147
Query: 144 DSYSTAQI-VFS--RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKT 200
A + + + K + V + GGLG AV A K V+ V ++K
Sbjct: 148 ----CAGVTTYKALKVTGAKPGEWVAI-YGIGGLGHVAVQYA-KAMGLNVVAVDIGDEKL 201
Query: 201 DLIRQKGAWAALTFTNEKSLVNKVLEVSGG 230
+L ++ GA + E + E GG
Sbjct: 202 ELAKELGADLVVNPLKED-AAKFMKEKVGG 230
Score = 33.3 bits (77), Expect = 0.070
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 1 VRIDIQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIE 42
V + I+ C + +DL +G KP LPL+PG E G + E
Sbjct: 28 VLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEE 69
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Length = 363
Score = 62.6 bits (153), Expect = 2e-11
Identities = 44/229 (19%), Positives = 71/229 (31%), Gaps = 57/229 (24%)
Query: 52 SDLLLYN--GSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKV-- 105
SD+ + G V G E +G VI V V ++VGD+V
Sbjct: 55 SDVHFWKHGCIGPMIVECDHVLGHESAGEVIAVH------------PSVKSIKVGDRVAI 102
Query: 106 -------------------------LALNKELLHG-FSDQCVVHTNDVFKIPEKMTFEHA 139
L+ + G KI M++E+
Sbjct: 103 EPQVICNACEPCLTGRYNGCERVDFLSTPP--VPGLLRRYVNHPAVWCHKIGN-MSYENG 159
Query: 140 ASLADSYSTA-QIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSE 197
A + + S A + + A ++ VL+ AG +GL + A K A ++ E
Sbjct: 160 A-MLEPLSVALAGL--QRAGVRLGDPVLICGAGP-IGLITMLCA-KAAGACPLVITDIDE 214
Query: 198 DKTDLIRQKGAWAALTFTNEKS---LVNKVLEVSGGKYANVVFEAVGGE 243
+ ++ S K++E GG V E G E
Sbjct: 215 GRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIEPAVALECTGVE 263
Score = 33.4 bits (77), Expect = 0.081
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 1 VRIDIQCCALNSSDLLLYN--GSGDAKPTLPLVPGFEFSGTIIE 42
V + ++ + SD+ + G V G E +G +I
Sbjct: 43 VTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVLGHESAGEVIA 86
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX,
oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha}
PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Length = 340
Score = 62.2 bits (152), Expect = 3e-11
Identities = 47/214 (21%), Positives = 78/214 (36%), Gaps = 58/214 (27%)
Query: 52 SDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKV---- 105
+DL +G KPTLP +PG E G V V V ++ GD+V
Sbjct: 42 TDLHAADGDWPVKPTLPFIPGHEGVGYVSAVG------------SGVSRVKEGDRVGVPW 89
Query: 106 -----------------LALNKELLH-----GFSDQCVVHTNDVFKIPEKMTFEHAASL- 142
L ++ G+ + V N V +P+K+ F A +
Sbjct: 90 LYSACGYCEHCLQGWETLCEKQQNTGYSVNGGYGEYVVADPNYVGLLPDKVGFVEIAPIL 149
Query: 143 -ADSYSTAQIVFS--RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA---KVIGVCNS 196
A V+ + + Q V++ + GGLG +A + +A +V V
Sbjct: 150 CAGV-----TVYKGLKVTDTRPGQWVVI-SGIGGLG----HVAVQYARAMGLRVAAVDID 199
Query: 197 EDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGG 230
+ K +L R+ GA A+ + + + GG
Sbjct: 200 DAKLNLARRLGAEVAVNARDTD-PAAWLQKEIGG 232
Score = 34.5 bits (80), Expect = 0.034
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 1 VRIDIQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIE 42
V++ I+ + +DL +G KPTLP +PG E G +
Sbjct: 30 VQVKIEASGVCHTDLHAADGDWPVKPTLPFIPGHEGVGYVSA 71
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A
{Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Length = 398
Score = 60.4 bits (147), Expect = 2e-10
Identities = 58/281 (20%), Positives = 91/281 (32%), Gaps = 74/281 (26%)
Query: 16 LLYNGSGD------AKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPL 69
++Y GSG P + G + +I K + T I SD + G A+ L
Sbjct: 6 VVYLGSGKVEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTAQV--GL 63
Query: 70 VPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVLA---------LNKELLHGFSD 118
V G E +G VIE DV LQ+GD V + + +
Sbjct: 64 VLGHEITGEVIEKGR------------DVENLQIGDLVSVPFNVACGRCRSCK--EMHTG 109
Query: 119 QCV-------------VHTNDV-----------------FKIPEKMTFEHAAS----LAD 144
C+ V D K+P++ L+D
Sbjct: 110 VCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFNLLKLPDRDKAMEKIRDLTCLSD 169
Query: 145 SYSTA-QIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAK-VIGVCNSEDKTDL 202
T A + TV V AG +GLAA A ++ A VI + +
Sbjct: 170 ILPTGYHGA--VTAGVGPGSTVYVAGAGP-VGLAAAASA-RLLGAAVVIVGDLNPARLAH 225
Query: 203 IRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE 243
+ +G + + L ++ + G + +AVG E
Sbjct: 226 AKAQGF-EIADLSLDTPLHEQIAALLGEPEVDCAVDAVGFE 265
>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics,
protein structure initiative, MCSG; HET: DTY; 2.80A
{Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1
Length = 328
Score = 59.6 bits (145), Expect = 2e-10
Identities = 50/210 (23%), Positives = 86/210 (40%), Gaps = 23/210 (10%)
Query: 49 INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
+N D L G T P VPG + +G V+ + + GD+V+A
Sbjct: 42 VNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVSSQHPR------------FREGDEVIAT 89
Query: 109 NKEL--LH--GFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLK---E 161
E+ H G+S+ +H + +P+ +T + A ++ + TA + R + E
Sbjct: 90 GYEIGVTHFGGYSEYARLHGEWLVPLPKGLTLKEAMAIGTAGFTAALSIHRLEEHGLTPE 149
Query: 162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLV 221
+ VLVT A GG+G AV M V + D +R GA L + +
Sbjct: 150 RGPVLVTGATGGVGSLAVSM-LAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAER 208
Query: 222 NKVLEVSGGKYANVVFEAVGGEDKTDLIRQ 251
+ L+ ++A V + VGG ++ +
Sbjct: 209 IRPLD--KQRWAAAV-DPVGGRTLATVLSR 235
>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for
struc genomics of infectious diseases, PSI, protein
structure INI; HET: MSE NAP; 1.90A {Salmonella enterica
subsp} PDB: 1o89_A 1o8c_A*
Length = 324
Score = 58.9 bits (143), Expect = 3e-10
Identities = 45/213 (21%), Positives = 80/213 (37%), Gaps = 31/213 (14%)
Query: 49 INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
+N D L G G P++PG +F+GTV D + G +VL
Sbjct: 39 LNYKDALAITGKGKIIRHFPMIPGIDFAGTVHASEDPR------------FHAGQEVLLT 86
Query: 109 NKEL--LH--GFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQI---VFSRHAKLKE 161
+ H G +++ V + + +P ++ +A + + TA + +
Sbjct: 87 GWGVGENHWGGLAERARVKGDWLVALPAGLSSRNAMIIGTAGFTAMLCVMALEDAGIRPQ 146
Query: 162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAAL---TFTNEK 218
V+VT A GG+G AV + K+ +V V E ++ GA L F +
Sbjct: 147 DGEVVVTGASGGVGSTAVALLHKL-GYQVAAVSGRESTHGYLKSLGANRILSRDEFAESR 205
Query: 219 SLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQ 251
L +A + + VG + ++ Q
Sbjct: 206 PL-------EKQLWAGAI-DTVGDKVLAKVLAQ 230
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase;
HET: NAD; 2.27A {Pseudomonas putida}
Length = 398
Score = 58.8 bits (143), Expect = 4e-10
Identities = 53/300 (17%), Positives = 88/300 (29%), Gaps = 78/300 (26%)
Query: 16 LLYNGSGD------AKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPL 69
++Y+G+ D P L + +I K + T I SD +Y G
Sbjct: 6 VVYHGTRDLRVETVPYPKL-EHNNRKLEHAVILKVVSTNICGSDQHIYRGRFIVPK--GH 62
Query: 70 VPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVLA---------LNKELLHGFSD 118
V G E +G V+E DV + +GD V N + SD
Sbjct: 63 VLGHEITGEVVEKGS------------DVELMDIGDLVSVPFNVACGRCRNCK--EARSD 108
Query: 119 QCVVHTN------------------------------DV--FKIPEKMT----FEHAASL 142
C + D K +K + +
Sbjct: 109 VCE-NNLVNPDADLGAFGFDLKGWSGGQAEYVLVPYADYMLLKFGDKEQAMEKIKDLTLI 167
Query: 143 ADSYSTA-QIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAK-VIGVCNSEDKT 200
+D T A +K V + AG +G A A ++ A VI + ++
Sbjct: 168 SDILPTGFHGC--VSAGVKPGSHVYIAGAGP-VGRCAAAGA-RLLGAACVIVGDQNPERL 223
Query: 201 DLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTF 260
L+ G + N L +++ ++ G + +AVG E
Sbjct: 224 KLLSDAGF-ETIDLRNSAPLRDQIDQILGKPEVDCGVDAVGFEAHGLGDEANTETPNGAL 282
>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto
reductase; rossmann fold, riken structural
genomics/proteomics initiative, RSGI; 2.00A {Cavia
porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A*
2dm6_A* 1zsv_A 2y05_A*
Length = 333
Score = 57.2 bits (139), Expect = 1e-09
Identities = 43/173 (24%), Positives = 71/173 (41%), Gaps = 21/173 (12%)
Query: 76 SGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMT 135
V V ++K+S+ G VLA G++ + + K+ +
Sbjct: 69 GQQVARVVESKNSA---------FPAGSIVLAQ-----SGWTTHFISDGKGLEKLLTEWP 114
Query: 136 FEHAASLADSY-----STAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKV 190
+ SLA TA +K +TVLV+AA G +G +A K+ KV
Sbjct: 115 DKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIA-KLKGCKV 173
Query: 191 IGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE 243
+G S++K ++Q G AA + SL + L+ + + F+ VGGE
Sbjct: 174 VGAAGSDEKIAYLKQIGFDAAFNYKTVNSL-EEALKKASPDGYDCYFDNVGGE 225
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione
reductase, glutathione-dependent formaldehyde
dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo
sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A*
2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Length = 373
Score = 54.5 bits (132), Expect = 1e-08
Identities = 56/247 (22%), Positives = 86/247 (34%), Gaps = 80/247 (32%)
Query: 52 SDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVLAL- 108
+D +G+ D + P++ G +G V V E V L+ GD V+ L
Sbjct: 46 TDAYTLSGA-DPEGCFPVILGHLGAGIVESVG------------EGVTKLKAGDTVIPLY 92
Query: 109 ----------------------------------------NKELLH-----GFSDQCVVH 123
K +LH FS+ VV
Sbjct: 93 IPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVA 152
Query: 124 TNDVFKIPEKMTFEHAASLADSYST---AQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVD 180
V KI + L ST A + AKL+ V GG+GLA +
Sbjct: 153 DISVAKIDPLAPLDKVCLLGCGISTGYGAAV---NTAKLEPGSVCAVFGL-GGVGLAVI- 207
Query: 181 MATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALT-FTN----EKSLVNKVLEVSGGKYAN 234
M K+ A ++IGV ++DK ++ GA T N K + ++E++ G +
Sbjct: 208 MGCKVAGASRIIGVDINKDKFARAKEFGA----TECINPQDFSKPIQEVLIEMTDGG-VD 262
Query: 235 VVFEAVG 241
FE +G
Sbjct: 263 YSFECIG 269
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination,
NAD, zinc, inhibition, acetylation, metal-binding; HET:
NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB:
1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A*
1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A
1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Length = 374
Score = 51.1 bits (123), Expect = 1e-07
Identities = 54/239 (22%), Positives = 84/239 (35%), Gaps = 79/239 (33%)
Query: 60 SGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVLAL--------- 108
SG LP++ G E +G V + E V ++ GDKV+ L
Sbjct: 54 SGTLVTPLPVIAGHEAAGIVESIG------------EGVTTVRPGDKVIPLFTPQCGKCR 101
Query: 109 --------------------------------NKELLH-----GFSDQCVVHTNDVFKIP 131
K + H FS VV V KI
Sbjct: 102 VCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKID 161
Query: 132 EKMTFEHAASLADSYST---AQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA 188
E + +ST + + + AK+ + T V GG+GL+ + M K A
Sbjct: 162 AASPLEKVCLIGCGFSTGYGSAV---KVAKVTQGSTCAVFGL-GGVGLSVI-MGCKAAGA 216
Query: 189 -KVIGVCNSEDKTDLIRQKGAWAALT-FTN----EKSLVNKVLEVSGGKYANVVFEAVG 241
++IGV ++DK ++ GA T N +K + + E+S G + FE +G
Sbjct: 217 ARIIGVDINKDKFAKAKEVGA----TECVNPQDYKKPIQEVLTEMSNGG-VDFSFEVIG 270
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase
(CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias}
SCOP: b.35.1.2 c.2.1.1
Length = 374
Score = 50.7 bits (122), Expect = 2e-07
Identities = 54/247 (21%), Positives = 80/247 (32%), Gaps = 80/247 (32%)
Query: 52 SDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVLAL- 108
+DL G K P+V G E +G V V V Q G+KV+ L
Sbjct: 48 TDLYHLFE-GKHKDGFPVVLGHEGAGIVESVG------------PGVTEFQPGEKVIPLF 94
Query: 109 ----------------------------------------NKELLH-----GFSDQCVVH 123
+++L FS VV+
Sbjct: 95 ISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVN 154
Query: 124 TNDVFKIPEKMTFEHAASLADSYST---AQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVD 180
V KI + L ST A + AK++ T V G +GLAAV
Sbjct: 155 QIAVAKIDPSAPLDTVCLLGCGVSTGFGAAV---NTAKVEPGSTCAVFGL-GAVGLAAV- 209
Query: 181 MATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALT-FTN----EKSLVNKVLEVSGGKYAN 234
M A ++I V + DK + + GA T F N + + + +++ G +
Sbjct: 210 MGCHSAGAKRIIAVDLNPDKFEKAKVFGA----TDFVNPNDHSEPISQVLSKMTNGG-VD 264
Query: 235 VVFEAVG 241
E VG
Sbjct: 265 FSLECVG 271
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus}
SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Length = 376
Score = 49.5 bits (119), Expect = 4e-07
Identities = 43/247 (17%), Positives = 78/247 (31%), Gaps = 83/247 (33%)
Query: 56 LYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVLAL----- 108
+ K P+V G E +G V V V + GDKV+
Sbjct: 50 INATDPKKKALFPVVLGHECAGIVESVG------------PGVTNFKPGDKVIPFFAPQC 97
Query: 109 ----------------------------------------NKELLH-----GFSDQCVVH 123
+ + H FS VV
Sbjct: 98 KRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVS 157
Query: 124 TNDVFKIPEKMTFEHAASLADSYST---AQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVD 180
++ ++ ++ E + +S+ A I AK+ T V G +GL+A+
Sbjct: 158 EANLARVDDEANLERVCLIGCGFSSGYGAAI---NTAKVTPGSTCAVFGL-GCVGLSAI- 212
Query: 181 MATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALT-FTN----EKSLVNKVLEVSGGKYAN 234
+ KI A ++I + + +K + GA T N +K + + + E++ G +
Sbjct: 213 IGCKIAGASRIIAIDINGEKFPKAKALGA----TDCLNPRELDKPVQDVITELTAGG-VD 267
Query: 235 VVFEAVG 241
+ G
Sbjct: 268 YSLDCAG 274
Score = 28.3 bits (64), Expect = 3.2
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 1 VRIDIQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIEK 43
VRI + + +D+ K P+V G E +G I+E
Sbjct: 36 VRIQVIATCVCPTDI--NATDPKKKALFPVVLGHECAG-IVES 75
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET:
NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2
c.2.1.1
Length = 371
Score = 48.3 bits (116), Expect = 1e-06
Identities = 33/147 (22%), Positives = 62/147 (42%), Gaps = 16/147 (10%)
Query: 116 FSDQCVVHTNDVFKIPEKMTFEHAASLADSYST---AQIVFSRHAKLKEKQTVLVTAAGG 172
F+ + N+ K+ + + E L T A I K+ + + A G
Sbjct: 145 FATYALSRENNTVKVTKDVPIELLGPLGCGIQTGAGACI---NALKVTPASSFVTWGA-G 200
Query: 173 GLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGK 231
+GL+A+ +A K+ A +I V E + +L +Q GA + + + V + E++ G
Sbjct: 201 AVGLSAL-LAAKVCGASIIIAVDIVESRLELAKQLGATHVIN-SKTQDPVAAIKEITDGG 258
Query: 232 YANVVFEAVGGEDKTDLIRQKGAWAAL 258
N E+ G ++++Q AL
Sbjct: 259 -VNFALESTG---SPEILKQ--GVDAL 279
>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing,
cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A
{Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A*
2w4q_A* 1vj1_A 2zb3_A*
Length = 357
Score = 48.0 bits (115), Expect = 2e-06
Identities = 35/181 (19%), Positives = 71/181 (39%), Gaps = 34/181 (18%)
Query: 76 SGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMT 135
G + + ++K ++ L GD V + + + ++ N + K+ ++
Sbjct: 82 GGGIGIIEESKHTN---------LTKGDFVTSFYW----PWQTKVILDGNSLEKVDPQLV 128
Query: 136 FEHAASLADSYS---------TAQIVFSRHAKLKE--KQTVLVTAAGGGLGLAAVDMATK 184
H SY T+ I + +T++V+ A G G A +
Sbjct: 129 DGHL-----SYFLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIG-H 182
Query: 185 IY-KAKVIGVCNSEDKTDLIRQK-GAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG 242
++V+G+C + +K L+ + G AA+ + + V + L S +V F+ VGG
Sbjct: 183 FLGCSRVVGICGTHEKCILLTSELGFDAAINYKKDN--VAEQLRESCPAGVDVYFDNVGG 240
Query: 243 E 243
Sbjct: 241 N 241
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H)
oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Length = 348
Score = 47.6 bits (114), Expect = 2e-06
Identities = 44/202 (21%), Positives = 65/202 (32%), Gaps = 69/202 (34%)
Query: 52 SDL-LLYNGSGDAKPTLPLVPGFEFSGTVIEVAD--TKSSSTEEDDEEDVLQVGDKV--- 105
SD+ Y+ + P++PG E +G + EV K ++GD V
Sbjct: 44 SDIHSAYSEWKEGI--YPMIPGHEIAGIIKEVGKGVKK------------FKIGDVVGVG 89
Query: 106 -------------------------------LALNKELLHG-FSDQCVVHTNDVFKIPEK 133
+ E G +S+ VV N V + +
Sbjct: 90 CFVNSCKACKPCKEHQEQFCTKVVFTYDCLDSFHDNEPHMGGYSNNIVVDENYVISVDKN 149
Query: 134 MTFEHAASLADSYSTAQI-VFS--RHAKLKEKQTVLVTAAG-GGLGLAAVDMATKIYKA- 188
E A L A I +S + +K+ + V V AG GGLG MA K A
Sbjct: 150 APLEKVAPLL----CAGITTYSPLKFSKVTKGTKVGV--AGFGGLG----SMAVKYAVAM 199
Query: 189 --KVIGVCNSEDKTDLIRQKGA 208
+V +E K G
Sbjct: 200 GAEVSVFARNEHKKQDALSMGV 221
Score = 31.4 bits (72), Expect = 0.36
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 1 VRIDIQCCALNSSDL-LLYNGSGDAKPTLPLVPGFEFSGTIIE 42
V IDI + SD+ Y+ + P++PG E +G I E
Sbjct: 32 VLIDILYAGICHSDIHSAYSEWKEGI--YPMIPGHEIAGIIKE 72
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase,
zinc-dependent, plant DE biosynthesis, substrate
inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB:
1yqx_A*
Length = 366
Score = 47.6 bits (114), Expect = 2e-06
Identities = 48/200 (24%), Positives = 71/200 (35%), Gaps = 65/200 (32%)
Query: 52 SDL-LLYNGSGDAKPTLPLVPGFEFSGTVIEVAD--TKSSSTEEDDEEDVLQVGDKV--- 105
SDL + N G + PLVPG E G V EV K + VGDKV
Sbjct: 56 SDLHSIKNDWGFSM--YPLVPGHEIVGEVTEVGSKVKK------------VNVGDKVGVG 101
Query: 106 -----------------------------LALNKELLHG-FSDQCVVHTNDVFKIPEKMT 135
+ + + +G +S+ V + + + P+ M
Sbjct: 102 CLVGACHSCESCANDLENYCPKMILTYASIYHDGTITYGGYSNHMVANERYIIRFPDNMP 161
Query: 136 FEHAASLADSYSTAQI-VFS--RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA---K 189
+ A L A I V+S ++ L E + GGLG +A K KA K
Sbjct: 162 LDGGAPLL----CAGITVYSPLKYFGLDEPGKHIGIVGLGGLG----HVAVKFAKAFGSK 213
Query: 190 VIGVCNSEDK-TDLIRQKGA 208
V + S K + ++ GA
Sbjct: 214 VTVISTSPSKKEEALKNFGA 233
Score = 32.5 bits (75), Expect = 0.13
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 1 VRIDIQCCALNSSDL-LLYNGSGDAKPTLPLVPGFEFSGTIIE 42
VR + C + SDL + N G + PLVPG E G + E
Sbjct: 44 VRFKVLYCGVCHSDLHSIKNDWGFSM--YPLVPGHEIVGEVTE 84
>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase
(AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB:
2j3i_A* 2j3j_A* 2j3k_A*
Length = 345
Score = 47.6 bits (114), Expect = 2e-06
Identities = 41/180 (22%), Positives = 65/180 (36%), Gaps = 35/180 (19%)
Query: 76 SGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTND--VFKIPEK 133
V + ++ + GD + + + + V+ FKI
Sbjct: 80 GYGVSRIIESGHPD---------YKKGDLLWGI-----VAWEEYSVITPMTHAHFKIQH- 124
Query: 134 MTFEHAASLADSYS---------TAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATK 184
L SY TA F KE +TV V+AA G +G +A K
Sbjct: 125 ----TDVPL--SYYTGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLA-K 177
Query: 185 IYKAKVIGVCNSEDKTDLIRQK-GAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE 243
+ V+G S++K DL++ K G A + E L L+ ++ FE VGG+
Sbjct: 178 MMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDL-TAALKRCFPNGIDIYFENVGGK 236
>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in
PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent,
oxidoreductase; HET: NAP; 3.00A {Saccharomyces
cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A
Length = 360
Score = 46.8 bits (112), Expect = 4e-06
Identities = 40/201 (19%), Positives = 67/201 (33%), Gaps = 68/201 (33%)
Query: 52 SDL-LLYNGSGDAKPTLPLVPGFEFSGTVIEV---ADTKSSSTEEDDEEDVLQVGDKV-- 105
SD+ G+ +PLV G E G V+++ +++ L+VG +V
Sbjct: 48 SDIHCAAGHWGNM--KMPLVVGHEIVGKVVKLGPKSNSG------------LKVGQRVGV 93
Query: 106 ------------------------------LALNKELLHG-FSDQCVVHTNDVFKIPEKM 134
+ + G +++ VH + V IPE +
Sbjct: 94 GAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENI 153
Query: 135 TFEHAASLADSYSTAQI-VFS--RHAKLKEKQTVLVTAAG-GGLGLAAVDMATKIYKA-- 188
AA L + V+S + V + G GG+G M T I KA
Sbjct: 154 PSHLAAPLL----CGGLTVYSPLVRNGCGPGKKVGI--VGLGGIG----SMGTLISKAMG 203
Query: 189 -KVIGVCNSEDKTDLIRQKGA 208
+ + S K + + GA
Sbjct: 204 AETYVISRSSRKREDAMKMGA 224
Score = 31.4 bits (72), Expect = 0.33
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 1 VRIDIQCCALNSSDL-LLYNGSGDAKPTLPLVPGFEFSGTIIE 42
+ I I+ C + SD+ G+ +PLV G E G +++
Sbjct: 36 IDIKIEACGVCGSDIHCAAGHWGNM--KMPLVVGHEIVGKVVK 76
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.0 bits (111), Expect = 5e-06
Identities = 47/242 (19%), Positives = 83/242 (34%), Gaps = 72/242 (29%)
Query: 54 LLLYNGSGDAKPTLPLVP---GF-------EFSGTVIEV-----ADTKSSSTEE------ 92
L L +GS + L LVP F +F+ + E AD + ++ E
Sbjct: 9 LTLSHGS--LEHVL-LVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFL 65
Query: 93 ---DDEEDVLQVG--DKVLALNKELLHGFSDQCVVHTNDV------FKIPEKMTFEHAAS 141
+ +VG D+VL L F + C + ND+ T
Sbjct: 66 GYVSSLVEPSKVGQFDQVL---NLCLTEF-ENCYLEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 142 LADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVC----NSE 197
L +Y TA+I+ R K+ + L A G G A+++ + N++
Sbjct: 122 LIKNYITARIMAKRPFD-KKSNSALFRAVGEG-------------NAQLVAIFGGQGNTD 167
Query: 198 DKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKG---- 253
D + +R + LV +++ S A + E + + + +G
Sbjct: 168 DYFEELRD-------LYQTYHVLVGDLIKFS----AETLSELIRTTLDAEKVFTQGLNIL 216
Query: 254 AW 255
W
Sbjct: 217 EW 218
Score = 27.7 bits (61), Expect = 6.0
Identities = 23/137 (16%), Positives = 37/137 (27%), Gaps = 52/137 (37%)
Query: 69 LVPGFEFSGTVIE-VADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDV 127
VP E + +A +E + V ++V L+ +V N
Sbjct: 1796 AVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV------EIV--N-- 1845
Query: 128 FKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYK 187
+ + Q V AAG L A+D T +
Sbjct: 1846 YNVE----------------NQQYV----------------AAG---DLRALDTVTNV-- 1868
Query: 188 AKVIGVCNSEDKTDLIR 204
I + K D+I
Sbjct: 1869 LNFIKL----QKIDIIE 1881
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology,
NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana
perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Length = 373
Score = 46.4 bits (111), Expect = 5e-06
Identities = 48/247 (19%), Positives = 77/247 (31%), Gaps = 82/247 (33%)
Query: 52 SDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVLAL- 108
SD P++ G E G V + V ++ GDKV+ L
Sbjct: 49 SDS--SVLKEIIPSKFPVILGHEAVGVVESIG------------AGVTCVKPGDKVIPLF 94
Query: 109 ----------------------------------------NKELLH-----GFSDQCVVH 123
K + + F++ VV
Sbjct: 95 VPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVA 154
Query: 124 TNDVFKIPEKMTFEHAASLADSYST---AQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVD 180
V KI K E + + ++T A + AK+ T V GG+G +A+
Sbjct: 155 DIAVAKIDPKAPLE-SCLIGCGFATGYGAAV---NTAKVTPGSTCAVFGL-GGVGFSAI- 208
Query: 181 MATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALT-FTN----EKSLVNKVLEVSGGKYAN 234
+ K A ++IGV +DK + GA T N +K + + E + G +
Sbjct: 209 VGCKAAGASRIIGVGTHKDKFPKAIELGA----TECLNPKDYDKPIYEVICEKTNGG-VD 263
Query: 235 VVFEAVG 241
E G
Sbjct: 264 YAVECAG 270
Score = 28.3 bits (64), Expect = 3.5
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 1 VRIDIQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIE 42
VRI I + SD P++ G E G ++E
Sbjct: 37 VRIKILASGICGSD--SSVLKEIIPSKFPVILGHEAVG-VVE 75
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis,
metal-binding, NADP, oxidoreductase, zinc; 2.0A
{Arabidopsis thaliana} PDB: 2cf6_A*
Length = 357
Score = 46.0 bits (110), Expect = 6e-06
Identities = 53/200 (26%), Positives = 71/200 (35%), Gaps = 65/200 (32%)
Query: 52 SDL-LLYNGSGDAKPTLPLVPGFEFSGTVIEVAD--TKSSSTEEDDEEDVLQVGDKV--- 105
+DL N G + P+VPG E G V+EV +K VGD V
Sbjct: 49 TDLHQTKNDLGMSN--YPMVPGHEVVGEVVEVGSDVSK------------FTVGDIVGVG 94
Query: 106 -----------------------------LALNKELLHG-FSDQCVVHTNDVFKIPEKMT 135
+ +N + G F+ VVH V KIPE M
Sbjct: 95 CLVGCCGGCSPCERDLEQYCPKKIWSYNDVYINGQPTQGGFAKATVVHQKFVVKIPEGMA 154
Query: 136 FEHAASLADSYSTAQI-VFS--RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA---K 189
E AA L A + V+S H LK+ GG+G M KI KA
Sbjct: 155 VEQAAPLL----CAGVTVYSPLSHFGLKQPGLRGGILGLGGVG----HMGVKIAKAMGHH 206
Query: 190 VIGVCNSEDK-TDLIRQKGA 208
V + +S K + ++ GA
Sbjct: 207 VTVISSSNKKREEALQDLGA 226
Score = 32.2 bits (74), Expect = 0.18
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 1 VRIDIQCCALNSSDL-LLYNGSGDAKPTLPLVPGFEFSGTIIE 42
V I I CC + +DL N G + P+VPG E G ++E
Sbjct: 37 VNIRIICCGICHTDLHQTKNDLGMSN--YPMVPGHEVVGEVVE 77
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK;
oxidoreductase, zinc binding, oxydoreductase,
metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2
c.2.1.1
Length = 369
Score = 44.9 bits (107), Expect = 1e-05
Identities = 48/202 (23%), Positives = 60/202 (29%), Gaps = 69/202 (34%)
Query: 52 SDL-LLYNGSGDAKPTLPLVPGFEFSGTVIEVAD--TKSSSTEEDDEEDVLQVGDKV--- 105
SDL + + P VPG E G V+ V D K GD V
Sbjct: 62 SDLHQVRSEWAGT--VYPCVPGHEIVGRVVAVGDQVEK------------YAPGDLVGVG 107
Query: 106 ------------------------LALNKELLH-------GFSDQCVVHTNDVFKIPEKM 134
N G+S Q VVH V +I
Sbjct: 108 CIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRHPQ 167
Query: 135 -TFEHAASLADSYSTAQI-VFS--RHAKLKEKQTVLVTAAG-GGLGLAAVDMATKIYKA- 188
A L A I +S RH + + V V G GGLG M K+ A
Sbjct: 168 EQLAAVAPLL----CAGITTYSPLRHWQAGPGKKVGV--VGIGGLG----HMGIKLAHAM 217
Query: 189 --KVIGVCNSEDKTDLIRQKGA 208
V+ SE K + + GA
Sbjct: 218 GAHVVAFTTSEAKREAAKALGA 239
Score = 32.2 bits (74), Expect = 0.18
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 1 VRIDIQCCALNSSDL-LLYNGSGDAKPTLPLVPGFEFSGTIIE 42
V+I+I C + SDL + + P VPG E G ++
Sbjct: 50 VKIEIAYCGVCHSDLHQVRSEWAGT--VYPCVPGHEIVGRVVA 90
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 39.9 bits (92), Expect = 2e-04
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 10/40 (25%)
Query: 42 EKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIE 81
EK+ + ++ +S L LY + D+ P L + T +E
Sbjct: 18 EKQALKKLQAS-LKLY--ADDSAPALAI------KAT-ME 47
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.8 bits (79), Expect = 0.036
Identities = 48/284 (16%), Positives = 98/284 (34%), Gaps = 75/284 (26%)
Query: 24 AKPTLPLVPG------------FEFSGTIIEKKMMTRINSS-DLL-------LYNGSG-- 61
T P ++ + K+ T I SS ++L +++
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
Query: 62 --DAK-P--TLPLVPGFEFSGTVIEVADT--KSSSTEEDDEE----------DVLQVGDK 104
A P L L+ V+ V + K S E+ +E ++ +
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441
Query: 105 VLALNKELLHGFSDQCVVHTNDVFKIPEKM-TFEH------AASLADSYSTAQIVFS--R 155
AL++ ++ ++ ++D+ + H + + ++VF R
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501
Query: 156 --HAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTD-LIRQKGAWAAL 212
K++ T A+G L + K YK I C+++ K + L+ A L
Sbjct: 502 FLEQKIRHDSTAW-NASGSILNTLQ-QL--KFYK-PYI--CDNDPKYERLVN-----AIL 549
Query: 213 TF--TNEKSLVNKVLEVSGGKYANVVFEAVGGEDKT---DLIRQ 251
F E++L+ KY +++ A+ ED+ + +Q
Sbjct: 550 DFLPKIEENLIC-------SKYTDLLRIALMAEDEAIFEEAHKQ 586
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
alternative binding mode, oxidoreductase; HET: TES;
1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Length = 327
Score = 32.4 bits (74), Expect = 0.14
Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 12/82 (14%)
Query: 162 KQTVLVTAAGGGLGLAAVDMATKIYKA--KVIGVC-NSEDKTDLIRQKGAWAALTF---- 214
+ VL+T G+GL KV + + + L A A
Sbjct: 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLET 61
Query: 215 -----TNEKSLVNKVLEVSGGK 231
+ KS+ V+ G+
Sbjct: 62 LQLDVRDSKSVAAARERVTEGR 83
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 31.9 bits (73), Expect = 0.20
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 162 KQTVLVTAAGGGLGLAAVD-MATKIYKAKVIGVC-NSEDKTDLIRQKGA---WAALTFTN 216
+V+VT A G+GL V + +I + E T+L K + LT T
Sbjct: 3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTC 62
Query: 217 EKS---LVNKVLEVSGGKYANVVF 237
+KS V+KV E+ G +++
Sbjct: 63 DKSLDTFVSKVGEIVGSDGLSLLI 86
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 31.9 bits (73), Expect = 0.27
Identities = 30/143 (20%), Positives = 44/143 (30%), Gaps = 21/143 (14%)
Query: 108 LNKELLHGFSDQCVVHTNDVFKIPEKM--TFEHAASLADSYSTAQIVFSRH--------- 156
L KEL G + V + D + T S +Y Q+
Sbjct: 148 LGKELRRGATVSLVYLSADAKPGATGLESTMRFILSAKSAYVDGQVFRVGAADSTPPADW 207
Query: 157 AKLKEKQTVLVTAAGGGLGLA-AVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTF- 214
K + + +VT A G+G A A A V+ + DL R
Sbjct: 208 DKPLDGKVAVVTGAARGIGATIAEVFARD--GATVVAIDVDGAAEDLKRVADKVGGTALT 265
Query: 215 ---TNEKS---LVNKVLEVSGGK 231
T + + + V E GGK
Sbjct: 266 LDVTADDAVDKITAHVTEHHGGK 288
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 30.6 bits (70), Expect = 0.49
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 150 QIVFSRHAKLKEKQTVLVTAAGGGLGLA-AVDMATKIYKAKVIGVCN-SEDKTDLIRQKG 207
+ F H L +L+T A +GL A+ + +VI +RQ G
Sbjct: 16 NLYFQGHMTLSSA-PILITGASQRVGLHCALRLLEH--GHRVIISYRTEHASVTELRQAG 72
Query: 208 AWA 210
A A
Sbjct: 73 AVA 75
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 30.7 bits (70), Expect = 0.54
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 164 TVLVTAAGGGLGL-AAVDMATKIYKAKVIGVCNSEDK 199
TV++T A GLG A ++A + A VI K
Sbjct: 18 TVVITGANSGLGAVTARELARR--GATVIMAVRDTRK 52
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 30.1 bits (68), Expect = 0.75
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 157 AKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK 206
+ E +L G G GL + + K +A V SE ++ + +
Sbjct: 40 SVDTENPDILD--LGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNR 87
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 30.1 bits (69), Expect = 0.75
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
Query: 162 KQTVLVTAAGGGLGLAAVDMATKIYK--AKVIGVC-NSEDKTDLIRQKGAWAALTFTNEK 218
++ LVT G+G A +A + +V N E+ + L + K
Sbjct: 2 ERKALVTGGSRGIGRA---IAEALVARGYRVAIASRNPEEAAQSLGAVPLPTDLEKDDPK 58
Query: 219 SLVNKVLEVSGG 230
LV + LE GG
Sbjct: 59 GLVKRALEALGG 70
>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty
acid biosynthesis II, short-chain dehydrogenase
reductase superfamily; HET: NAI; 1.80A {Yersinia pestis}
PDB: 3zu4_A* 3zu5_A* 3zu2_A*
Length = 405
Score = 30.4 bits (68), Expect = 0.76
Identities = 23/104 (22%), Positives = 32/104 (30%), Gaps = 8/104 (7%)
Query: 150 QI--VFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKG 207
QI V + + VLV A G GLAA A A +GV +
Sbjct: 33 QIDYVTTEGPIANGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTS 92
Query: 208 AWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQ 251
W + +K G ++ +A E K I
Sbjct: 93 GW------YNSAAFHKFAAQKGLYAKSINGDAFSDEIKQLTIDA 130
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 29.8 bits (68), Expect = 0.78
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Query: 161 EKQTVLVTAAGGGLGLA-AVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWAALTFT 215
E + LVT A G+G A A +A + AKVIG SE I G AL T
Sbjct: 8 EGKVALVTGASRGIGKAIAELLAER--GAKVIGTATSESGAQAISDYLGDNGKGMALNVT 65
Query: 216 NE---KSLVNKVLEVSGG 230
N ++++ + + GG
Sbjct: 66 NPESIEAVLKAITDEFGG 83
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 29.5 bits (67), Expect = 1.1
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 3/54 (5%)
Query: 147 STAQIVFSRHAKLKEKQTVLVTAAGGGLGLA-AVDMATKIYKAKVIGVCNSEDK 199
T + ++ K+ VT GGLG A + + V + +
Sbjct: 10 GTLEAQTQGPGSMQAKRVAFVTGGMGGLGAAISRRLHDA--GMAVAVSHSERND 61
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 29.4 bits (67), Expect = 1.2
Identities = 19/78 (24%), Positives = 24/78 (30%), Gaps = 10/78 (12%)
Query: 161 EKQTVLVTAAGGGLGLA-AVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTF----T 215
+ LVT A GG+G A A + A V EDK I F +
Sbjct: 26 TGRKALVTGATGGIGEAIARCFHAQ--GAIVGLHGTREDKLKEIAADLGKDVFVFSANLS 83
Query: 216 NE---KSLVNKVLEVSGG 230
+ K L G
Sbjct: 84 DRKSIKQLAEVAEREMEG 101
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET:
NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A
2vrc_D
Length = 287
Score = 29.6 bits (67), Expect = 1.2
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 164 TVLVTAAGGGLGLAAVD-MATKIYKAKVIGVCNSEDKTDLIRQKGA-WAALTFTNEKSL- 220
++ VT A G LG + + K+ +++I + + +K + +G + +SL
Sbjct: 2 SIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQ 61
Query: 221 -----VNKVLEVSGGKYANV 235
V+K+L +SG Y N
Sbjct: 62 KAFAGVSKLLFISGPHYDNT 81
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 29.1 bits (66), Expect = 1.4
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Query: 146 YSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLA-AVDMATKIYKAKVIGVCNSEDK----T 200
+S+ + H ++ + LVT A G+GL A + + +V E+
Sbjct: 6 HSSGLVPRGSHMATQDSEVALVTGATSGIGLEIARRLGKE--GLRVFVCARGEEGLRTTL 63
Query: 201 DLIRQKGAWA 210
+R+ G A
Sbjct: 64 KELREAGVEA 73
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 28.7 bits (64), Expect = 1.7
Identities = 16/93 (17%), Positives = 25/93 (26%), Gaps = 12/93 (12%)
Query: 99 LQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAK 158
L++ D + +N +H S + EK V
Sbjct: 64 LKIFDHICDINGTPIHVGSMTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNV------ 117
Query: 159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVI 191
L+ AG LGL+ A +I
Sbjct: 118 ------DLMKKAGKELGLSLSPNEIGCTIADLI 144
Score = 27.2 bits (60), Expect = 5.0
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 99 LQVGDKVLALNKELLHGFSDQCVVH 123
LQ GD + N + L G Q
Sbjct: 155 LQRGDIITKFNGDALEGLPFQVCYA 179
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 28.7 bits (65), Expect = 2.0
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 161 EKQTVLVTAAGGGLGLA-AVDMATKIYKAKVIGVCNSEDK 199
E + LVT AG G+G A +A + VI + ++
Sbjct: 43 ENKVALVTGAGRGIGREIAKMLAKS--VSHVICISRTQKS 80
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide
binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 27.7 bits (62), Expect = 2.0
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 99 LQVGDKVLALNKELLHGFSDQCVVH 123
LQ GD + N + L G Q
Sbjct: 44 LQRGDIITKFNGDALEGLPFQVCYA 68
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A {Homo
sapiens}
Length = 95
Score = 27.4 bits (61), Expect = 2.0
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 94 DEEDVLQVGDKVLALNKELLHGFSDQCVVH 123
D + VGD + ++N E + G+ V
Sbjct: 42 DSVKTICVGDHIESINGENIVGWRHYDVAK 71
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 28.7 bits (65), Expect = 2.1
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 15/80 (18%)
Query: 163 QTVLVTAAGGGLGLAAVDMATKIYK--AKVIGVCNSEDKTD----LIRQKGAWA---ALT 213
+ LVT A G+G A +A+ K A ++ +++ D + G A
Sbjct: 35 KIALVTGASYGIGFA---IASAYAKAGATIVFNDINQELVDRGMAAYKAAGINAHGYVCD 91
Query: 214 FTNE---KSLVNKVLEVSGG 230
T+E +++V ++ G
Sbjct: 92 VTDEDGIQAMVAQIESEVGI 111
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 28.8 bits (65), Expect = 2.1
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 158 KLKEKQTVLVTAAGGGLGLA-AVDMATKIYKAKVIGVCNSEDK 199
L K V+ AA GG+GL + ++ + K + + +
Sbjct: 2 DLTNK-NVIFVAALGGIGLDTSRELVKR--NLKNFVILDRVEN 41
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 29.0 bits (65), Expect = 2.1
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 163 QTVLVTAAGGGLGLA-AVDMATKIYKAKVI 191
+ +VT AG GLG A+ A AKV+
Sbjct: 20 RVAVVTGAGAGLGREYALLFAE--RGAKVV 47
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 28.5 bits (64), Expect = 2.2
Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 11/85 (12%)
Query: 164 TVLVTAAGGGLGLAAVDMATKIYKA--KVIGVC-NSEDKTDLIRQKGAWAALTF-----T 215
++L+T GLGL V + + + C N E +L + +
Sbjct: 23 SILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLR 82
Query: 216 NEKS---LVNKVLEVSGGKYANVVF 237
N + LV + V+ + NV+F
Sbjct: 83 NFDAYDKLVADIEGVTKDQGLNVLF 107
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding
protein, membrane, sensory transduction, vision; 1.55A
{Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Length = 96
Score = 27.3 bits (61), Expect = 2.3
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 99 LQVGDKVLALNKELLHGFSDQCVVH 123
LQ GD + N + L G Q
Sbjct: 50 LQRGDIITKFNGDALEGLPFQVSYA 74
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 28.3 bits (64), Expect = 2.4
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 163 QTVLVTAAGGGLGLA-AVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLV 221
+ VLV AA G+G A A ++ + A+V +E+ L R + +
Sbjct: 20 KGVLVLAASRGIGRAVADVLSQE--GAEVTICARNEEL--LKRSGHRYVVCDLRK---DL 72
Query: 222 NKVLEVSGG 230
+ + E
Sbjct: 73 DLLFEKVKE 81
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 28.7 bits (65), Expect = 2.4
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 13/81 (16%)
Query: 161 EKQTVLVTAAGGGLGLA-AVDMATKIYKAKVIGVCNSEDK----TDLIRQKGAWA---AL 212
+KQ +VT A G+G A A+++A + A VIG +E +Q G L
Sbjct: 27 DKQVAIVTGASRGIGRAIALELARR--GAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVL 84
Query: 213 TFTNE---KSLVNKVLEVSGG 230
+ +LV L+ G
Sbjct: 85 NVNDATAVDALVESTLKEFGA 105
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 28.2 bits (64), Expect = 2.6
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Query: 159 LKEKQTVLVTAAGGGLGLA-AVDMATKIYKAKVIGVCNSEDK----TDLIRQKGAWAALT 213
L ++ +LVT A G+G A+ A Y A VI + +E+K I ++
Sbjct: 10 LNDR-IILVTGASDGIGREAAMTYAR--YGATVILLGRNEEKLRQVASHINEETGRQPQW 66
Query: 214 F 214
F
Sbjct: 67 F 67
>3phz_A Ricin B-related lectin; beta trefoil, saccharide binding lectin,
2,6-sialyl-lactosam sugar binding protein; HET: NAG GAL
SIA; 1.70A {Polyporus squamosus}
Length = 286
Score = 28.5 bits (63), Expect = 2.7
Identities = 10/82 (12%), Positives = 28/82 (34%), Gaps = 10/82 (12%)
Query: 203 IRQKGAWAALTFTNEKSLVNKVLEVSGGKYAN----VVFEAVGGEDKTDLIRQKGAWAAL 258
I G T N + ++++G + + + GG+++ +I Q
Sbjct: 51 IEPVGEADTYTVRNAFA--GSYMDLAGHAATDGTAIIGYRPTGGDNQKWIISQINDV--W 106
Query: 259 TFTNEKSLVNKVLEVSGGKYAN 280
++++ + + G
Sbjct: 107 KIKSKET--GTFVTLLNGDGGG 126
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 28.4 bits (62), Expect = 3.0
Identities = 8/53 (15%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 72 GFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHT 124
GF +I + E ++VG +++ +N + + + + +V
Sbjct: 311 GFSVQNGIICSLMRGGIA-----ERGGVRVGHRIIEINGQSVVATAHEKIVQA 358
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; PDZ, E6 binding, tumor suppressor, peptide
binding protein; 2.15A {Mus musculus}
Length = 85
Score = 26.8 bits (60), Expect = 3.0
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 99 LQVGDKVLALNKELLHGFSDQCVVH 123
++ GD ++++N + G + VV
Sbjct: 44 METGDVIVSVNDTCVLGHTHAQVVK 68
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 27.3 bits (61), Expect = 3.0
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 99 LQVGDKVLALNKELLHGFSDQCVVHT 124
L+ GD+++A+N + L G + + V
Sbjct: 72 LKRGDQIIAVNGQSLEGVTHEEAVAI 97
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 28.2 bits (64), Expect = 3.0
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 161 EKQTVLVTAAGGGLGLA-AVDMATKIYKAKVIGVCNSEDKTDLIRQ 205
++ LVT A G+G A +A+K A V+G S+ +
Sbjct: 4 NEKVALVTGASRGIGFEVAHALASK--GATVVGTATSQASAEKFEN 47
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 28.3 bits (64), Expect = 3.1
Identities = 13/72 (18%), Positives = 22/72 (30%), Gaps = 7/72 (9%)
Query: 164 TVLVTAAGGGLGLA-AVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWA-ALTFTNE---K 218
T +VT G+ A+ ++ V S + D + L +E
Sbjct: 3 TAIVTNVKHFGGMGSALRLSEA--GHTVACHDESFKQKDELEAFAETYPQLKPMSEQEPA 60
Query: 219 SLVNKVLEVSGG 230
L+ V G
Sbjct: 61 ELIEAVTSAYGQ 72
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 27.0 bits (60), Expect = 3.2
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 99 LQVGDKVLALNKELLHGFSDQCVVH 123
L+VGD++LA+N + + +V
Sbjct: 62 LKVGDRILAVNGQSIINMPHADIVK 86
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 27.9 bits (63), Expect = 3.4
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 6/74 (8%)
Query: 161 EKQTVLVTAAGGGLGLA-AVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFT---N 216
+T L+T A G+G A A + +KVI ++E+K +
Sbjct: 13 TGKTSLITGASSGIGSAIARLLHKL--GSKVIISGSNEEKLKSLGNALKDNYTIEVCNLA 70
Query: 217 EKSLVNKVLEVSGG 230
K + ++ +
Sbjct: 71 NKEECSNLISKTSN 84
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 27.5 bits (61), Expect = 3.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 99 LQVGDKVLALNKELLHGFSDQCVV 122
L+ GD+VL N LL G + + V
Sbjct: 84 LRPGDEVLEWNGRLLQGATFEEVY 107
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 26.5 bits (59), Expect = 3.4
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 94 DEEDVLQVGDKVLALNKELLHGFSDQCVVH 123
D + L+ GD++++++ + G S Q VV
Sbjct: 41 DTDGRLRSGDELISVDGTPVIGKSHQLVVQ 70
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 28.0 bits (63), Expect = 3.5
Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 7/61 (11%)
Query: 155 RHAKLKEKQTVLVTAAGGGLGLA-AVDMATKIYKAKVIGVCNSEDK----TDLIRQKGAW 209
R + + QT VT G+GLA A +A + V G D +R G
Sbjct: 17 RGSHMSRPQTAFVTGVSSGIGLAVARTLAAR--GIAVYGCARDAKNVSAAVDGLRAAGHD 74
Query: 210 A 210
Sbjct: 75 V 75
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 28.0 bits (63), Expect = 3.5
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 161 EKQTVLVTAAGGGLGLAAV 179
+ +LV G LG V
Sbjct: 21 MSKNILVLGGSGALGAEVV 39
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol
transfer, signaling protein; 1.90A {Drosophila
melanogaster} SCOP: b.86.1.1
Length = 145
Score = 27.3 bits (60), Expect = 3.6
Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 15/104 (14%)
Query: 99 LQVGDKVLALNKELLHGFSD-QCVVHTNDVFKIPE-----------KMTFEHAASLAD-S 145
L +GD+VL++ +S+ + N +T H S+
Sbjct: 21 LSIGDRVLSMTANGQAVYSEVILFMDRNLEQMQNFVQLHTDGGAVLTVTPAHLVSVWQPE 80
Query: 146 YSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAK 189
VF+ ++EK VLV G + ++K
Sbjct: 81 SQKLTFVFADR--IEEKNQVLVRDVETGELRPQRVVKVGSVRSK 122
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 28.1 bits (63), Expect = 3.7
Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 163 QTVLVTAAGGGLGLA-AVDMA 182
+ VLVT AGGGLG A A+ A
Sbjct: 10 RVVLVTGAGGGLGRAYALAFA 30
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics,
PDZ domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB:
2koh_A 2k1z_A 2k20_A
Length = 127
Score = 27.1 bits (60), Expect = 3.9
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 99 LQVGDKVLALNKELLHGFSDQCVVHT 124
L++ D+++A+N E L G S+ + T
Sbjct: 74 LRMNDQLIAVNGETLLGKSNHEAMET 99
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 27.0 bits (60), Expect = 3.9
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 99 LQVGDKVLALNKELLHGFSDQCVVH 123
L G +VL N L + + V
Sbjct: 68 LMEGMQVLEWNGIPLTSKTYEEVQS 92
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 27.9 bits (63), Expect = 3.9
Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 13/80 (16%)
Query: 163 QTVLVTAAGGGLGLA-AVDMATKIYKAKVIGVCNSEDKTD----LIRQKGAWA-ALTF-- 214
T LVT G+G A ++A A+V +E + D + R+KG
Sbjct: 22 TTALVTGGSKGIGYAIVEELAG--LGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDL 79
Query: 215 TNE---KSLVNKVLEVSGGK 231
+ L+ V V GK
Sbjct: 80 LSRTERDKLMQTVAHVFDGK 99
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein;
1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 26.5 bits (59), Expect = 4.4
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 99 LQVGDKVLALNKELLHGFSDQCVVH 123
L+VGD++L+LN + + ++Q V+
Sbjct: 56 LKVGDRILSLNGKDVRNSTEQAVID 80
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 27.4 bits (62), Expect = 4.5
Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 15/80 (18%)
Query: 163 QTVLVTAAGGGLGLAAVDMATKIYK--AKVIGVCNSEDKTD----LIRQKGAWA-ALTF- 214
+T LVT + GLG A A + A+VI + +KG A + F
Sbjct: 10 KTALVTGSARGLGFA---YAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFD 66
Query: 215 -TNEKS---LVNKVLEVSGG 230
T+E + +K+
Sbjct: 67 VTDELAIEAAFSKLDAEGIH 86
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 27.6 bits (62), Expect = 4.6
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 134 MTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAA 178
M H S T + F +K +K +VT AG G+G A
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMSKTGKK-IAIVTGAGSGVGRAV 44
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 26.5 bits (59), Expect = 4.7
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 99 LQVGDKVLALNKELLHGFSDQCVV 122
L GD++L+++ L G S +
Sbjct: 57 LAAGDQLLSVDGRSLVGLSQERAA 80
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 27.5 bits (62), Expect = 4.9
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 163 QTVLVTAAGGGLGLAAVDMATKIYK--AKVIGVCNSEDKTDLIRQKGAWA 210
+ V+VT G G+G + + KV + E ++ ++
Sbjct: 3 RGVIVTGGGHGIGKQ---ICLDFLEAGDKVCFIDIDEKRSADFAKERPNL 49
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 26.7 bits (59), Expect = 5.4
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 94 DEEDVLQVGDKVLALNKELLHGFSDQCVVH 123
+ ++ GD ++++N + G + VV
Sbjct: 57 ALDGKMETGDVIVSVNDTCVLGHTHAQVVK 86
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 27.5 bits (62), Expect = 5.6
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 153 FSRHAKLKEKQTVLVTAAGGGLGLA-AVDMATKIYKAKVIGVCNSEDK----TDLIRQKG 207
+S H +L + + +LVT A G+G A A A + A V+ + +E +D I+ G
Sbjct: 5 YSAHPELLKGRVILVTGAARGIGAAAARAYAA--HGASVVLLGRTEASLAEVSDQIKSAG 62
Query: 208 AWAALTF 214
L
Sbjct: 63 QPQPLII 69
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 27.5 bits (62), Expect = 5.6
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 161 EKQTVLVTAAGGGLGLA-AVDMATKIYKAKVIGVCNSEDK 199
++VLVT G+GLA A A KV S +
Sbjct: 20 MSRSVLVTGGNRGIGLAIARAFADA--GDKVAITYRSGEP 57
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 27.7 bits (62), Expect = 5.7
Identities = 9/21 (42%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 163 QTVLVTAAGGGLGLA-AVDMA 182
+ V++T AGGGLG +++ A
Sbjct: 9 KVVIITGAGGGLGKYYSLEFA 29
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 27.5 bits (62), Expect = 5.7
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 13/80 (16%)
Query: 163 QTVLVTAAGGGLGLA-AVDMATKIYKAKVIGVCNSEDKTD----LIRQKGAWA------A 211
+TVLVT G+G A + A + A + +E + + ++KG A
Sbjct: 15 KTVLVTGGTKGIGHAIVEEFAG--FGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDA 72
Query: 212 LTFTNEKSLVNKVLEVSGGK 231
+ L+ V + GGK
Sbjct: 73 SLRPEREKLMQTVSSMFGGK 92
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 27.3 bits (61), Expect = 5.8
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 161 EKQTVLVTAAGGGLGLA-AVDMA 182
+ + V+VT AGGG+G A A+ A
Sbjct: 26 DGRVVIVTGAGGGIGRAHALAFA 48
>3s44_A Alpha-2,3/2,6-sialyltransferase/sialidase; GT-B fold; HET: FN5;
1.45A {Pasteurella multocida} PDB: 2ilv_A* 2ex0_A
2ihj_A* 2ihk_A* 2ihz_A* 2iiq_A* 2ii6_A* 2iib_A* 2ex1_A*
2c83_A 2iy7_A* 2c84_A* 2iy8_A*
Length = 399
Score = 27.5 bits (60), Expect = 5.9
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 12/79 (15%)
Query: 71 PGFEFSGTVIEVADTKSSSTEEDDEEDVLQ----------VGDKVLALNKELLHG--FSD 118
F F+GT +T + ++L +GD K G +D
Sbjct: 236 AKFIFTGTTTWEGNTDVREYYAQQQLNLLNHFTQAEGDLFIGDHYKIYFKGHPRGGEIND 295
Query: 119 QCVVHTNDVFKIPEKMTFE 137
+ + ++ IP ++FE
Sbjct: 296 YILNNAKNITNIPANISFE 314
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 27.2 bits (61), Expect = 5.9
Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 8/76 (10%)
Query: 163 QTVLVTAAGGGLGLA-AVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTF----TNE 217
+ +LVT G+G + + + V GV SE +++K T +
Sbjct: 3 KVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYGDRFFYVVGDITED 62
Query: 218 ---KSLVNKVLEVSGG 230
K LVN ++ G
Sbjct: 63 SVLKQLVNAAVKGHGK 78
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 27.1 bits (61), Expect = 6.0
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 13/80 (16%)
Query: 163 QTVLVTAAGGGLGLA-AVDMATKIYKAKVIGVCNSEDKTD----LIRQKGAWA-ALTF-- 214
T LVT G+G ++A+ A V ++ + + R KG A
Sbjct: 10 CTALVTGGSRGIGYGIVEELAS--LGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDL 67
Query: 215 TNE---KSLVNKVLEVSGGK 231
++ + L+N V GK
Sbjct: 68 SSRSERQELMNTVANHFHGK 87
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 27.0 bits (60), Expect = 6.1
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 94 DEEDVLQVGDKVLALNKELLHGFSDQCVVH 123
D E ++ GD++L+++ L G + +
Sbjct: 149 DREGTIKPGDRLLSVDGIRLLGTTHAEAMS 178
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 27.1 bits (61), Expect = 6.1
Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 16/80 (20%)
Query: 163 QTVLVTAAGGGLGLAAVDMATKIYK--AKVIGVCNSEDKTD-----LIRQKGAWA-ALTF 214
+ LVT GLG +A + + V+ + ++ L + G A
Sbjct: 22 RVALVTGGSRGLGFG---IAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRC 78
Query: 215 --TNE---KSLVNKVLEVSG 229
+N K L+ V E G
Sbjct: 79 DVSNYEEVKKLLEAVKEKFG 98
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase
cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A
{Azotobacter vinelandii}
Length = 458
Score = 27.4 bits (61), Expect = 6.2
Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 14/60 (23%)
Query: 147 STAQIVFSRHAK---------LKEKQTVLVTAAGGGLGL-AAVDMATKIYKAKVIGVCNS 196
+ A++ F RH + + + +V+ G + A+ + VIG+ +
Sbjct: 46 AFAKVFFVRHFREPVPLQTTAMDQVSSVM----GADENVVEALKTICERQNPSVIGLLTT 101
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex
(helicase/DNA), DNA unwinding, hydrolase/DNA complex;
HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19
c.37.1.19
Length = 673
Score = 27.5 bits (62), Expect = 6.7
Identities = 10/19 (52%), Positives = 11/19 (57%), Gaps = 4/19 (21%)
Query: 202 LIRQKGAWA----ALTFTN 216
LIR G A A+TFTN
Sbjct: 39 LIRGCGYQARHIAAVTFTN 57
Score = 27.5 bits (62), Expect = 6.7
Identities = 10/19 (52%), Positives = 11/19 (57%), Gaps = 4/19 (21%)
Query: 248 LIRQKGAWA----ALTFTN 262
LIR G A A+TFTN
Sbjct: 39 LIRGCGYQARHIAAVTFTN 57
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1
PDB: 1qav_B
Length = 112
Score = 26.3 bits (58), Expect = 7.0
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 94 DEEDVLQVGDKVLALNKELLHGFSDQCVVH 123
++ ++Q GD +LA+N L S +
Sbjct: 40 EQSGLIQAGDIILAVNDRPLVDLSYDSALE 69
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription,
RNA binding protein; 2.69A {Saccharomyces cerevisiae}
PDB: 4dzs_A 3bx2_A 3bx3_A
Length = 333
Score = 27.1 bits (60), Expect = 7.2
Identities = 14/115 (12%), Positives = 37/115 (32%), Gaps = 21/115 (18%)
Query: 189 KVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVV----FEAVGGED 244
K++ +E + L + +E+S + E + ++
Sbjct: 66 KLLEEVTTEQRIVLTKI--------------SSPHFVEISLNPHGTRALQKLIECIKTDE 111
Query: 245 KTDLIRQ--KGAWAALTF-TNEKSLVNKVLEVSGGKYANVVFEAVGGEVFKAAMH 296
+ ++ + L+ N ++ K L+ + +F+A+ A H
Sbjct: 112 EAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDIATH 166
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 26.9 bits (60), Expect = 7.2
Identities = 8/23 (34%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 157 AKLKEKQTVLVTAAGGGLGLAAV 179
A + + VLV G LG V
Sbjct: 3 ASGEAR-RVLVYGGRGALGSRCV 24
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 27.1 bits (61), Expect = 7.3
Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 161 EKQTVLVTAAGGGLGLA-AVDMATKIYKAKVIGVCNSEDKTDLIRQK 206
+ + LVT + G+G A A +A+ + VI S ++ + ++
Sbjct: 6 QGKVSLVTGSTRGIGRAIAEKLASA--GSTVIITGTSGERAKAVAEE 50
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 27.1 bits (61), Expect = 7.4
Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 10/68 (14%)
Query: 136 FEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYK--AKVIGV 193
H++ L S FS L + LVT G+G +A + + A+V
Sbjct: 8 HHHSSGLVPRGSHMHPYFS----LAGR-IALVTGGSRGIGQM---IAQGLLEAGARVFIC 59
Query: 194 CNSEDKTD 201
+
Sbjct: 60 ARDAEACA 67
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 25.8 bits (57), Expect = 8.1
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 94 DEEDVLQVGDKVLALNKELLHGFS 117
++ LQ+GDK+LA+N L +
Sbjct: 47 HKDGKLQIGDKLLAVNSVSLEEVT 70
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin
metabolism, S-adenosyl-methionine; 1.80A {Geobacter
metallireducens}
Length = 204
Score = 26.8 bits (59), Expect = 8.4
Identities = 6/49 (12%), Positives = 21/49 (42%)
Query: 157 AKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ 205
+KL+ + +++ G G +++ + + ++ + + IR
Sbjct: 34 SKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRD 82
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 25.8 bits (57), Expect = 8.5
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 94 DEEDVLQVGDKVLALNKELLHGFSDQCVVH 123
+E LQ+ D+++ +N L + V
Sbjct: 55 AKEGGLQIHDRIIEVNGRDLSRATHDQAVE 84
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 25.9 bits (57), Expect = 8.8
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 99 LQVGDKVLALNKELLHGFSDQCVVH 123
+ GD++ +N + G + V
Sbjct: 64 VAAGDEITGVNGRSIKGKTKVEVAK 88
>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding,
fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}
Length = 422
Score = 27.0 bits (59), Expect = 8.8
Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 10/105 (9%)
Query: 150 QI--VFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVC-NSEDKTDLIRQK 206
QI +R + + VLV A G GLA+ A + A +GV
Sbjct: 47 QIAATRARGVRNDGPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTA 106
Query: 207 GAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQ 251
G + + F +K + +G ++ +A + +I
Sbjct: 107 GWYNSAAF-------DKHAKAAGLYSKSINGDAFSDAARAQVIEL 144
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 25.9 bits (57), Expect = 8.9
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 99 LQVGDKVLALNKELLHGFSDQCVVH 123
+ GD++ +N + G + V
Sbjct: 69 VAAGDEITGVNGRSIKGKTKVEVAK 93
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 26.8 bits (59), Expect = 9.2
Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 161 EKQTVLVTAAGGGLGLAAV-DMATKIYKAKVIGVCNSEDK 199
+++ +VT G+G +++ V+ C K
Sbjct: 11 KRRCAVVTGGNKGIGFEICKQLSSN--GIMVVLTCRDVTK 48
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 93
Score = 25.3 bits (56), Expect = 9.3
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 94 DEEDVLQVGDKVLALNKELLHGFSDQCVVH 123
D L+ GD++L++N + G + V
Sbjct: 44 DRHGGLKRGDQLLSVNGVSVEGEQHEKAVE 73
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 26.7 bits (60), Expect = 9.6
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
Query: 163 QTVLVTAAGGGLGLAAVDMATKIYK--AKVIGVCNSEDKTDL---IRQKG 207
+T +VT AG G+G A +A + A V+ ++ ++ I G
Sbjct: 32 RTAVVTGAGSGIGRA---IAHGYARAGAHVLAWGRTDGVKEVADEIADGG 78
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 26.5 bits (58), Expect = 9.9
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 99 LQVGDKVLALNKELLHGFSDQCVVHT 124
+QV D ++ ++ L G +
Sbjct: 130 IQVNDLLVEVDGTSLVGVTQSFAASV 155
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 26.3 bits (58), Expect = 9.9
Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 9/83 (10%)
Query: 94 DEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVF 153
+ VLQ+GD+V+A+N + + I K+T E +A+S + F
Sbjct: 50 ERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTF 109
Query: 154 SRHAKLKEKQTVLVTAAGGGLGL 176
L LG+
Sbjct: 110 ---------HVKLPKKHSVELGI 123
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 25.8 bits (57), Expect = 9.9
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 99 LQVGDKVLALNKELLHGFSDQCVVHT 124
L+VG ++L +N++ L G + V
Sbjct: 63 LRVGLRLLEVNQQSLLGLTHGEAVQL 88
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 25.8 bits (57), Expect = 10.0
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 99 LQVGDKVLALNKELLHGFS 117
LQVGD++L +N L +
Sbjct: 73 LQVGDRLLMVNNYSLEEVT 91
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.370
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,375,572
Number of extensions: 262721
Number of successful extensions: 1307
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1140
Number of HSP's successfully gapped: 353
Length of query: 296
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 203
Effective length of database: 4,105,140
Effective search space: 833343420
Effective search space used: 833343420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (25.5 bits)