RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy196
(364 letters)
>gnl|CDD|215833 pfam00274, Glycolytic, Fructose-bisphosphate aldolase class-I.
Length = 348
Score = 628 bits (1623), Expect = 0.0
Identities = 241/350 (68%), Positives = 279/350 (79%), Gaps = 2/350 (0%)
Query: 15 ELKLIAETLVEPGKGILAADESVSTMGKRLADIGVENTEENRRLYRQLLFTTDHELGESI 74
EL A+ +V PGKGILAADES T+GKRLA IGVENTEENRR YR+LLFTT LGE I
Sbjct: 1 ELIKTAKAIVAPGKGILAADESTGTIGKRLASIGVENTEENRRAYRELLFTTP-GLGEYI 59
Query: 75 SGVILFHDTLYEKADDGTPFVELLRQRGIIPGIKVDKGVVPLAGTDGETTTQGLDDLAKR 134
SGVILF +TLY+K DDG PFV+LL+++GI+PGIKVDKG+VPLAGTDGETTTQGLD LA+R
Sbjct: 60 SGVILFEETLYQKTDDGKPFVDLLKEKGIVPGIKVDKGLVPLAGTDGETTTQGLDGLAER 119
Query: 135 CDKYKTDGCHFAKWRCVLKIGDHTPSALAILENANVLARYASICQASRIVPIVEPEVLPD 194
C +Y G FAKWR VLKI +TPS LAI ENANVLARYA+ICQ + +VPIVEPE+L D
Sbjct: 120 CAEYYKQGARFAKWRAVLKISPNTPSELAIEENANVLARYAAICQQNGLVPIVEPEILLD 179
Query: 195 GAHDLARCQKVTEAVLASVVKALHDHNVYLEGILLKPNMVTPGASCSEKYAPSDIALATV 254
G HDL RCQ+VTE VLA+V KAL+DH+V LEG LLKPNMVTPGA C +K P D+A ATV
Sbjct: 180 GDHDLERCQEVTEKVLAAVFKALNDHHVMLEGTLLKPNMVTPGADCPKKATPEDVAEATV 239
Query: 255 TALQRTLPVAVPGVVFLSGGQTEEEASVHLNAINQTQALTPWALSFSYGRALQASVLRAW 314
AL+RT+P AVPG+VFLSGGQ+EEEA+ +LNA+NQ PWALSFSYGRALQASVL+AW
Sbjct: 240 RALRRTVPPAVPGIVFLSGGQSEEEATANLNAMNQLPLKKPWALSFSYGRALQASVLKAW 299
Query: 315 GGRPGNVLAGQNELLARARANGCASLGHYKAGAVKGVAGERDLFVKDHAY 364
GG+P NV A Q LLARA+AN A LG Y G A E L+V ++AY
Sbjct: 300 GGKPENVKAAQEALLARAKANSLAQLGKYTGGGEGAAASES-LYVANYAY 348
>gnl|CDD|188635 cd00948, FBP_aldolase_I_a, Fructose-1,6-bisphosphate aldolase.
Fructose-1,6-bisphosphate aldolase. The enzyme catalyzes
the cleavage of fructose 1,6-bisphosphate to
glyceraldehyde 3-phosphate and dihydroxyacetone
phosphate (DHAP). This family includes proteins found in
vertebrates, plants, and bacterial plant pathogens.
Mutations in the aldolase genes in humans cause
hemolytic anemia and hereditary fructose intolerance.
The enzyme is a member of the class I aldolase family,
which utilizes covalent catalysis through a Schiff base
formed between a lysine residue of the enzyme and ketose
substrates.
Length = 330
Score = 600 bits (1548), Expect = 0.0
Identities = 225/330 (68%), Positives = 267/330 (80%), Gaps = 1/330 (0%)
Query: 14 AELKLIAETLVEPGKGILAADESVSTMGKRLADIGVENTEENRRLYRQLLFTTDHELGES 73
EL A+ +V PGKGILAADES T+GKR A IGVENTEENRR YR+LLFTT LG+
Sbjct: 2 EELIKTAKAIVAPGKGILAADESTGTIGKRFASIGVENTEENRRAYRELLFTTP-GLGQY 60
Query: 74 ISGVILFHDTLYEKADDGTPFVELLRQRGIIPGIKVDKGVVPLAGTDGETTTQGLDDLAK 133
ISGVILF +TLY+K DDG PFV++L+++GI+PGIKVDKG+VPLAGTDGETTTQGLD LA+
Sbjct: 61 ISGVILFEETLYQKTDDGKPFVDILKEKGIVPGIKVDKGLVPLAGTDGETTTQGLDGLAE 120
Query: 134 RCDKYKTDGCHFAKWRCVLKIGDHTPSALAILENANVLARYASICQASRIVPIVEPEVLP 193
RC KY G FAKWR VLKIG+ TPS LAI ENA+ LARYA+ICQ + +VPIVEPEVL
Sbjct: 121 RCAKYYKQGARFAKWRAVLKIGNGTPSELAIKENAHGLARYAAICQENGLVPIVEPEVLM 180
Query: 194 DGAHDLARCQKVTEAVLASVVKALHDHNVYLEGILLKPNMVTPGASCSEKYAPSDIALAT 253
DG HD+ RCQ+VTE VLA+V KAL+DH+V LEG LLKPNMVTPGA C +K +P ++A T
Sbjct: 181 DGDHDIERCQEVTEKVLAAVYKALNDHHVLLEGTLLKPNMVTPGADCKKKASPEEVAEYT 240
Query: 254 VTALQRTLPVAVPGVVFLSGGQTEEEASVHLNAINQTQALTPWALSFSYGRALQASVLRA 313
V AL+RT+P AVPG+VFLSGGQ+EEEA+++LNA+N+ PWALSFSYGRALQAS L+A
Sbjct: 241 VRALRRTVPAAVPGIVFLSGGQSEEEATLNLNAMNKLPLPKPWALSFSYGRALQASALKA 300
Query: 314 WGGRPGNVLAGQNELLARARANGCASLGHY 343
WGG+ NV A Q LL RA+AN A+LG Y
Sbjct: 301 WGGKKENVEAAQKALLKRAKANSLAALGKY 330
>gnl|CDD|240231 PTZ00019, PTZ00019, fructose-bisphosphate aldolase; Provisional.
Length = 355
Score = 520 bits (1341), Expect = 0.0
Identities = 216/357 (60%), Positives = 257/357 (71%), Gaps = 4/357 (1%)
Query: 10 PELQAELKLIAETLVEPGKGILAADESVSTMGKRLADIGVENTEENRRLYRQLLFTTDHE 69
E EL A+ + PGKGILAADES T+ KR IG+ENTEENRR YR+LLFTT+
Sbjct: 1 TEYAKELAETAKKIAAPGKGILAADESTGTIKKRFDPIGLENTEENRRAYRELLFTTEG- 59
Query: 70 LGESISGVILFHDTLYEKADDGTPFVELLRQRGIIPGIKVDKGVVPLAGTDGETTTQGLD 129
L + ISGVILF +T+Y+KA G FVELL+++GI+PGIKVDKG+V L GTDGET+TQGLD
Sbjct: 60 LEQYISGVILFEETVYQKAPSGKTFVELLKEKGIVPGIKVDKGLVTLPGTDGETSTQGLD 119
Query: 130 DLAKRCDKYKTDGCHFAKWRCVLKIG--DHTPSALAILENANVLARYASICQASRIVPIV 187
LA+R KY G FAKWR VLKI PS LAI ENA LARYA+ICQ + +VPIV
Sbjct: 120 GLAERAKKYYKAGARFAKWRAVLKIDPAKGKPSELAIQENAWTLARYAAICQENGLVPIV 179
Query: 188 EPEVLPDGAHDLARCQKVTEAVLASVVKALHDHNVYLEGILLKPNMVTPGASCSEKYAPS 247
EPE+L DG+H + CQKVTE VLA V KAL+DH V LEG LLKPNMVTPG+ C K P
Sbjct: 180 EPEILIDGSHSIEVCQKVTEKVLAEVFKALNDHGVLLEGCLLKPNMVTPGSDCGVKATPQ 239
Query: 248 DIALATVTALQRTLPVAVPGVVFLSGGQTEEEASVHLNAINQTQALTPWALSFSYGRALQ 307
++A TV L RT+P A+PGV+FLSGGQ+EEEAS++LNA+N+ PWALSFSYGRALQ
Sbjct: 240 EVAFYTVRTLSRTVPPALPGVMFLSGGQSEEEASLNLNAMNKLTLPRPWALSFSYGRALQ 299
Query: 308 ASVLRAWGGRPGNVLAGQNELLARARANGCASLGHYKAGAVKGVAGERDLFVKDHAY 364
+S L+ W G+ NV A Q LL RA+AN A LG YK G A E L+VKD+ Y
Sbjct: 300 SSALKTWKGKDENVAAAQKALLHRAKANSLAQLGKYKGGDGGAAASE-SLYVKDYKY 355
>gnl|CDD|178074 PLN02455, PLN02455, fructose-bisphosphate aldolase.
Length = 358
Score = 492 bits (1269), Expect = e-176
Identities = 213/354 (60%), Positives = 252/354 (71%), Gaps = 6/354 (1%)
Query: 11 ELQAELKLIAETLVEPGKGILAADESVSTMGKRLADIGVENTEENRRLYRQLLFTTDHEL 70
EL K IA PGKGILAADES T+GKRLA I VEN E NR+ R+LLFT L
Sbjct: 11 ELIKNAKYIAT----PGKGILAADESTGTIGKRLASINVENVESNRQALRELLFTAPGAL 66
Query: 71 GESISGVILFHDTLYEKADDGTPFVELLRQRGIIPGIKVDKGVVPLAGTDGETTTQGLDD 130
+ +SGVILF +TLY+K DG PFV++L++ G++PGIKVDKG V LAGT+GETTTQGLD
Sbjct: 67 -QYLSGVILFEETLYQKTSDGKPFVDVLKENGVLPGIKVDKGTVELAGTNGETTTQGLDG 125
Query: 131 LAKRCDKYKTDGCHFAKWRCVLKIGDHTPSALAILENANVLARYASICQASRIVPIVEPE 190
L RC KY G FAKWR VLKIG PS LAI ENA LARYA ICQ + +VPIVEPE
Sbjct: 126 LGARCAKYYEAGARFAKWRAVLKIGPTEPSELAIQENAQGLARYAIICQENGLVPIVEPE 185
Query: 191 VLPDGAHDLARCQKVTEAVLASVVKALHDHNVYLEGILLKPNMVTPGASCSEKYAPSDIA 250
+L DG+HD+ +C VTE VLA+ KAL+DH+V LEG LLKPNMVTPG S S K +P IA
Sbjct: 186 ILVDGSHDIKKCAAVTERVLAACYKALNDHHVLLEGTLLKPNMVTPG-SDSPKVSPEVIA 244
Query: 251 LATVTALQRTLPVAVPGVVFLSGGQTEEEASVHLNAINQTQALTPWALSFSYGRALQASV 310
TV ALQRT+P AVPG+VFLSGGQ+EEEA+++LNA+N+ + L PW LSFS+GRALQ S
Sbjct: 245 EYTVRALQRTVPPAVPGIVFLSGGQSEEEATLNLNAMNKLKTLKPWTLSFSFGRALQQST 304
Query: 311 LRAWGGRPGNVLAGQNELLARARANGCASLGHYKAGAVKGVAGERDLFVKDHAY 364
L+AW G+ NV Q L R +AN A+LG YK A G L VKD+ Y
Sbjct: 305 LKAWAGKKENVAKAQAAFLVRCKANSEATLGKYKGDAAGGEGASESLHVKDYKY 358
>gnl|CDD|188629 cd00344, FBP_aldolase_I, Fructose-bisphosphate aldolase class I.
Fructose-bisphosphate aldolase class I.
Fructose-1,6-bisphosphate aldolase is an enzyme of the
glycolytic and gluconeogenic pathways found in
vertebrates, plants, and bacteria. The enzyme catalyzes
the cleavage of fructose 1,6-bisphosphate to
glyceraldehyde 3-phosphate and dihydroxyacetone
phosphate (DHAP). Mutations in the aldolase genes in
humans cause hemolytic anemia and hereditary fructose
intolerance. The enzyme is a member of the class I
aldolase family, which utilizes covalent catalysis
through a Schiff base formed between a lysine residue of
the enzyme and ketose substrates. Although structurally
similar, the class II aldolases use a different
mechanism and are believed to have an independent
evolutionary origin.
Length = 328
Score = 393 bits (1010), Expect = e-137
Identities = 222/323 (68%), Positives = 264/323 (81%)
Query: 13 QAELKLIAETLVEPGKGILAADESVSTMGKRLADIGVENTEENRRLYRQLLFTTDHELGE 72
+ EL IA +V PGKGILAADES ++ KRL IG ENTEENRR YRQLL T D +
Sbjct: 1 KKELSDIAHRIVAPGKGILAADESTGSIAKRLQSIGTENTEENRRFYRQLLLTADDRVNP 60
Query: 73 SISGVILFHDTLYEKADDGTPFVELLRQRGIIPGIKVDKGVVPLAGTDGETTTQGLDDLA 132
I GVILFH+TLY+KADDG PF ++++ +G + GIKVDKGVVPLAGT+GETTTQGLD L+
Sbjct: 61 RIGGVILFHETLYQKADDGRPFPQVIKSKGGVVGIKVDKGVVPLAGTNGETTTQGLDGLS 120
Query: 133 KRCDKYKTDGCHFAKWRCVLKIGDHTPSALAILENANVLARYASICQASRIVPIVEPEVL 192
+RC +YK DG FAKWRCVLKIG+HTPSALAI+ENANVLARYASICQ + IVPIVEPE+L
Sbjct: 121 ERCAQYKKDGADFAKWRCVLKIGEHTPSALAIMENANVLARYASICQQNGIVPIVEPEIL 180
Query: 193 PDGAHDLARCQKVTEAVLASVVKALHDHNVYLEGILLKPNMVTPGASCSEKYAPSDIALA 252
PDG HDL RCQ VTE VLA+V KAL DH++YLEG LLKPNMVTPG +C++K++ +IA+A
Sbjct: 181 PDGDHDLKRCQYVTEKVLAAVYKALSDHHIYLEGTLLKPNMVTPGHACTQKFSHEEIAMA 240
Query: 253 TVTALQRTLPVAVPGVVFLSGGQTEEEASVHLNAINQTQALTPWALSFSYGRALQASVLR 312
TVTAL+RT+P AV GV FLSGGQ+EEEAS++LNAIN+ L PWAL+FSYGRALQAS L+
Sbjct: 241 TVTALRRTVPPAVTGVTFLSGGQSEEEASINLNAINKCPLLKPWALTFSYGRALQASALK 300
Query: 313 AWGGRPGNVLAGQNELLARARAN 335
AWGG+ N+ A Q E + RA AN
Sbjct: 301 AWGGKKENLKAAQEEYVKRALAN 323
>gnl|CDD|226116 COG3588, COG3588, Fructose-1,6-bisphosphate aldolase [Carbohydrate
transport and metabolism].
Length = 332
Score = 370 bits (951), Expect = e-128
Identities = 151/331 (45%), Positives = 202/331 (61%), Gaps = 2/331 (0%)
Query: 15 ELKLIAETLVEPGKGILAADESVSTMGKRLADIGVENTEENRRLYRQLLFTTDHELGESI 74
L A V GKG +AADES T KR G+E TE +RR R+ LFT+ + + I
Sbjct: 4 RLNDTALKKVANGKGFIAADESGGTTPKRFDSYGIEETEYSRRDMRERLFTSPDFMEDYI 63
Query: 75 SGVILFHDTLYEKADDGTPFVELLRQRGIIPGIKVDKGVVPLAGTDGETTTQGLDDLAKR 134
G ILF +T+ +KAD G P L +++GI+PGIKVDKG+ PLAG E T+GLD L KR
Sbjct: 64 LGAILFEETMDQKADGGYPADYLWKEKGIVPGIKVDKGLKPLAGVQLEKPTEGLDGLLKR 123
Query: 135 CDKYKTDGCHFAKWRCVLKIGDHTPSALAILENANVLARYASICQASRIVPIVEPEVLPD 194
+Y G FAKWR V+KI D PS I N + LA YA++CQA+ +VPIVEPEV D
Sbjct: 124 AKEYHIFGARFAKWRSVIKIADGIPSWGGIKANVHQLAEYAALCQAAGLVPIVEPEVDID 183
Query: 195 GAHDLARCQKVTEAVLASVVKALHDHNVYLEGILLKPNMVTPGASCSEKYAPSDIALATV 254
G HD AR ++VT+A L ++ AL++ V + G++LK +MV G E +P ++A T+
Sbjct: 184 GDHDKARSEEVTKAELRKLLNALNEERVVMLGLILKTSMVISGKKSREA-SPDEVAEDTL 242
Query: 255 TALQRTLPVAVPGVVFLSGGQTEEEASVHLNAINQTQALTPWALSFSYGRALQASVLRAW 314
+L T+P VPG+VFLSGG + EEA+ HL+A N + L PW+L FS+ RALQ L+AW
Sbjct: 243 YSLLSTVPAVVPGIVFLSGGYSSEEANAHLSANNGERPL-PWSLIFSFSRALQEGALKAW 301
Query: 315 GGRPGNVLAGQNELLARARANGCASLGHYKA 345
G N Q + R A+LG +K
Sbjct: 302 QGDEENFAKAQAASIERIYEASLAALGKWKQ 332
>gnl|CDD|215234 PLN02425, PLN02425, probable fructose-bisphosphate aldolase.
Length = 390
Score = 368 bits (947), Expect = e-126
Identities = 191/350 (54%), Positives = 239/350 (68%), Gaps = 5/350 (1%)
Query: 15 ELKLIAETLVEPGKGILAADESVSTMGKRLADIGVENTEENRRLYRQLLFTTDHELGESI 74
EL A+++ PG+GILA DES +T GKRLA IG++NTE NR+ YRQLL TT LGE I
Sbjct: 46 ELVQTAKSVASPGRGILAIDESNATCGKRLASIGLDNTETNRQAYRQLLLTTPG-LGEYI 104
Query: 75 SGVILFHDTLYEKADDGTPFVELLRQRGIIPGIKVDKGVVPLAGTDGETTTQGLDDLAKR 134
SG ILF +TLY+ DG FV+ LR + I+PGIKVDKG+VPL G++ E+ QGLD LA R
Sbjct: 105 SGAILFEETLYQSTTDGKKFVDCLRDQNIVPGIKVDKGLVPLPGSNNESWCQGLDGLASR 164
Query: 135 CDKYKTDGCHFAKWRCVLKIGDHTPSALAILENANVLARYASICQASRIVPIVEPEVLPD 194
+Y G FAKWR V+ I PSALA+ E A LARYA+I Q + +VPIVEPE+L D
Sbjct: 165 SAEYYKQGARFAKWRTVVSI-PCGPSALAVKEAAWGLARYAAISQDNGLVPIVEPEILLD 223
Query: 195 GAHDLARCQKVTEAVLASVVKALHDHNVYLEGILLKPNMVTPGASCSEKYAPSDIALATV 254
G H + R +V E V + V L +NV EGILLKP+MVTPGA EK +P IA T+
Sbjct: 224 GDHPIERTLEVAEKVWSEVFFYLAQNNVLFEGILLKPSMVTPGAEHKEKASPETIAKYTL 283
Query: 255 TALQRTLPVAVPGVVFLSGGQTEEEASVHLNAINQTQALTPWALSFSYGRALQASVLRAW 314
T L+R +P AVPG++FLSGGQ+E EA+++LNA+NQ+ PW +SFSY RALQ SVL+ W
Sbjct: 284 TMLRRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQSP--NPWHVSFSYARALQNSVLKTW 341
Query: 315 GGRPGNVLAGQNELLARARANGCASLGHYKAGAVKGVAGERDLFVKDHAY 364
GRP NV A Q LL RA+AN A LG Y A A ++ +FVK + Y
Sbjct: 342 QGRPENVEAAQKALLVRAKANSLAQLGRYSAEGESEEA-KKGMFVKGYTY 390
>gnl|CDD|177872 PLN02227, PLN02227, fructose-bisphosphate aldolase I.
Length = 399
Score = 326 bits (837), Expect = e-110
Identities = 180/350 (51%), Positives = 232/350 (66%), Gaps = 5/350 (1%)
Query: 15 ELKLIAETLVEPGKGILAADESVSTMGKRLADIGVENTEENRRLYRQLLFTTDHELGESI 74
EL A+T+ PG GI+A DES +T GKRLA IG+ENTE NR+ YR LL + LG+ I
Sbjct: 55 ELVKTAKTIASPGHGIMAMDESNATCGKRLASIGLENTEANRQAYRTLLVSAPG-LGQYI 113
Query: 75 SGVILFHDTLYEKADDGTPFVELLRQRGIIPGIKVDKGVVPLAGTDGETTTQGLDDLAKR 134
SG ILF +TLY+ DG V++L ++ I+PGIKVDKG+VPL G+ E+ QGLD LA R
Sbjct: 114 SGAILFEETLYQSTTDGKKMVDVLVEQNIVPGIKVDKGLVPLVGSYDESWCQGLDGLASR 173
Query: 135 CDKYKTDGCHFAKWRCVLKIGDHTPSALAILENANVLARYASICQASRIVPIVEPEVLPD 194
Y G FAKWR V+ I + PSALA+ E A LARYA+I Q S +VPIVEPE++ D
Sbjct: 174 TAAYYQQGARFAKWRTVVSIPN-GPSALAVKEAAWGLARYAAISQDSGLVPIVEPEIMLD 232
Query: 195 GAHDLARCQKVTEAVLASVVKALHDHNVYLEGILLKPNMVTPGASCSEKYAPSDIALATV 254
G H + R V E V A V L +NV EGILLKP+MVTPGA +++ P +A T+
Sbjct: 233 GEHGIDRTYDVAEKVWAEVFFYLAQNNVMFEGILLKPSMVTPGAEATDRATPEQVASYTL 292
Query: 255 TALQRTLPVAVPGVVFLSGGQTEEEASVHLNAINQTQALTPWALSFSYGRALQASVLRAW 314
L+ +P AVPG++FLSGGQ+E EA+++LNA+N QA PW +SFSY RALQ + L+ W
Sbjct: 293 KLLRNRIPPAVPGIMFLSGGQSELEATLNLNAMN--QAPNPWHVSFSYARALQNTCLKTW 350
Query: 315 GGRPGNVLAGQNELLARARANGCASLGHYKAGAVKGVAGERDLFVKDHAY 364
GG+ NV A Q+ LLARA+AN A LG Y G + + +FVK + Y
Sbjct: 351 GGKEENVKAAQDILLARAKANSLAQLGKY-TGEGESEEAKEGMFVKGYTY 399
>gnl|CDD|188636 cd00949, FBP_aldolase_I_bact, Fructose-1.6-bisphosphate aldolase
found in gram +/- bacteria. Fructose-1.6-bisphosphate
aldolase found in gram +/- bacteria. The enzyme
catalyzes the cleavage of fructose 1,6-bisphosphate to
glyceraldehyde 3-phosphate and dihydroxyacetone
phosphate (DHAP). The enzyme is member of the class I
aldolase family, which utilizes covalent catalysis
through a Schiff base formed between a lysine residue of
the enzyme and ketose substrates.
Length = 292
Score = 60.9 bits (148), Expect = 2e-10
Identities = 83/294 (28%), Positives = 130/294 (44%), Gaps = 54/294 (18%)
Query: 27 GKGILAA-DESVSTMGKRLADIGVE-----NTEENRRLYRQL---LFTTDHELGESISGV 77
GKG +AA D+S + K LA G+E N EE L ++ + T+ G+ I G
Sbjct: 10 GKGFIAALDQSGGSTPKALAAYGIEEDAYSNEEEMFDLVHEMRTRIITSPAFDGDKILGA 69
Query: 78 ILFHDTLYEKADDGTPFVELL-RQRGIIPGIKVDKGVVPLAGTDGETTTQGLDDLAKRCD 136
ILF T+ + +G P + L ++ I+P +KVDKG+ +G + + +L +
Sbjct: 70 ILFEQTMDREI-EGKPTADYLWEKKQIVPFLKVDKGLAEEK--NGVQLMKPIPNLDELLM 126
Query: 137 KYKTDGCHFAKWRCVLKIGDHTPSAL-AILENANVLARYASICQASRIVPIVEPEVLPDG 195
+ K G K R V I + P + A+++ LA+ + +VPI+EPEV
Sbjct: 127 RAKEKGVFGTKMRSV--IKEANPKGIAAVVDQQFELAK---QILSHGLVPIIEPEVDIHS 181
Query: 196 AHDLARCQKVTEAVLASVVKALHDHNVYLEGILLKPNMVTPGASCSEKYAPSDIALATVT 255
A D A+C+ + +A + + L + + ++LK + L T
Sbjct: 182 A-DKAKCEAILKAEILKHLDKLPEG----QQVMLK------------------LTLPTEA 218
Query: 256 ALQRTL---PVAVPGVVFLSGGQTEEEASVHLNAINQTQALTPWALSFSYGRAL 306
L P + VV LSGG + EEA+ L N A SFS RAL
Sbjct: 219 NFYSELIEHPKVLR-VVALSGGYSREEANELLAKNNGVIA------SFS--RAL 263
>gnl|CDD|180045 PRK05377, PRK05377, fructose-1,6-bisphosphate aldolase; Reviewed.
Length = 296
Score = 60.3 bits (147), Expect = 3e-10
Identities = 90/309 (29%), Positives = 129/309 (41%), Gaps = 84/309 (27%)
Query: 27 GKGILAA-DESVSTMGKRLADIGVE-----NTEENRRLYRQLLFTTDHEL---------- 70
GKG +AA D+S + K L GVE N EE +F HE+
Sbjct: 13 GKGFIAALDQSGGSTPKALKLYGVEEDAYSNEEE--------MFDLVHEMRTRIITSPAF 64
Query: 71 -GESISGVILFHDTLYEKADDGTPFVELLRQ-RGIIPGIKVDKGVVPLAGTDGETTTQ-- 126
G+ I G ILF T+ + + G P + L + +G++P +KVDKG+ A +G Q
Sbjct: 65 TGDKILGAILFEQTMDREIE-GKPTADYLWEKKGVVPFLKVDKGLAEEA--NG---VQLM 118
Query: 127 ----GLDDLAKRCDKYKTDGCHFAKWRCVLKIGDHTPSALAILENANVLAR---YASICQ 179
LDDL R + G K R V+K + I A V+A+ A
Sbjct: 119 KPIPNLDDLLDRAVEKGIFG---TKMRSVIK----EANEQGI---AAVVAQQFEVAKQIL 168
Query: 180 ASRIVPIVEPEVLPDGAHDLARCQKVTEAVLASVVKAL-HDHNVYLE-GILLKPNMVTPG 237
A+ +VPI+EPEV + D A + + +A + + AL D V L+ I + N+
Sbjct: 169 AAGLVPIIEPEVDINSP-DKAEAEAILKAEILKQLDALPEDQQVMLKLTIPTEANL---- 223
Query: 238 ASCSEKYAPSDIALATVTALQRTLPVAVPGVVFLSGGQTEEEASVHLNAINQTQALTPWA 297
Y L + R VV LSGG + +EA+ L + A
Sbjct: 224 ------YKE----LIDHPRVLR--------VVALSGGYSRDEANELLARNHGLIA----- 260
Query: 298 LSFSYGRAL 306
SFS RAL
Sbjct: 261 -SFS--RAL 266
>gnl|CDD|119359 cd06542, GH18_EndoS-like, Endo-beta-N-acetylglucosaminidases are
bacterial chitinases that hydrolyze the chitin core of
various asparagine (N)-linked glycans and glycoproteins.
The endo-beta-N-acetylglucosaminidases have a glycosyl
hydrolase family 18 (GH18) catalytic domain. Some
members also have an additional C-terminal glycosyl
hydrolase family 20 (GH20) domain while others have an
N-terminal domain of unknown function (pfam08522).
Members of this family include
endo-beta-N-acetylglucosaminidase S (EndoS) from
Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and
EndoH from Flavobacterium meningosepticum, and EndoE
from Enterococcus faecalis. EndoS is a secreted
endoglycosidase from Streptococcus pyogenes that
specifically hydrolyzes the glycan on human IgG between
two core N-acetylglucosamine residues. EndoE is a
secreted endoglycosidase, encoded by the ndoE gene in
Enterococcus faecalis, that hydrolyzes the glycan on
human RNase B.
Length = 255
Score = 34.3 bits (79), Expect = 0.067
Identities = 21/86 (24%), Positives = 29/86 (33%), Gaps = 11/86 (12%)
Query: 68 HELGESISGVILFHDTLYEKADDGTPFVELLRQRGIIP----GIKVDKGV---VPLAGTD 120
L +S+ V LF + A F+ ++ I P G KV + AG
Sbjct: 22 LNLPDSVDMVSLFAANINLDAATAVQFLLTNKETYIRPLQAKGTKVLLSILGNHLGAGFA 81
Query: 121 GETTTQGLDDLAK----RCDKYKTDG 142
+ AK DKY DG
Sbjct: 82 NNLSDAAAKAYAKAIVDTVDKYGLDG 107
>gnl|CDD|219928 pfam08602, Mgr1, Mgr1-like, i-AAA protease complex subunit. The S.
cerevisiae Mgr1 protein has been shown to be required
for mitochondrial viability in yeast lacking
mitochondrial DNA. It is a mitochondrial inner membrane
protein, which interacts with Yme1 and is a new subunit
of the i-AAA protease complex.
Length = 362
Score = 31.8 bits (72), Expect = 0.48
Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 28/94 (29%)
Query: 25 EPGKGILAADESVSTMGKRLADIGVENTEENRRLYRQLLFTTDHELGES----------- 73
+ G+L S+S GK L +I E EENR+ +LL +E+ E
Sbjct: 252 KTSGGLLN---SISNKGKYL-EIYTELNEENRKRILKLLHEDLNEVNELNKAPRLDLIPE 307
Query: 74 ----------ISGVILFHDTLYEKADDGTPFVEL 97
+ VIL D ++ + E+
Sbjct: 308 GKSQLYNPEALRSVILLGDH---ESPEDIDLEEI 338
>gnl|CDD|181558 PRK08811, PRK08811, uroporphyrinogen-III synthase; Validated.
Length = 266
Score = 29.0 bits (65), Expect = 3.1
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 9/58 (15%)
Query: 292 ALTPWALSFSYGRALQ-------ASVLRAWGGRPGNVLAGQNELLARARANGCASLGH 342
A L+ S AL ++ RA RP V+A + LL A A G +
Sbjct: 188 AAPRSVLALSSAEALTLILQQLPDALRRALQQRP--VVASSDRLLDAAHAAGFIHVMR 243
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
epsilon chain (part of a paralogous family) from
animals, plants, fungi, and other eukaryotes.
Length = 532
Score = 29.4 bits (66), Expect = 3.8
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 49 VENTEENRRLYRQLLFTTDHELGESISGVILFHDTLYEKADDGTPFVELLRQRGIIPGIK 108
++ +L +L + D E+G+ +GV++ L E+A E L +GI P IK
Sbjct: 76 MDVDNPIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEQA-------EELLDKGIHP-IK 127
Query: 109 VDKG 112
+ +G
Sbjct: 128 IAEG 131
>gnl|CDD|129256 TIGR00152, TIGR00152, dephospho-CoA kinase. This model produces
scores in the range of 0-25 bits against adenylate,
guanylate, uridine, and thymidylate kinases
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Pantothenate and coenzyme A].
Length = 188
Score = 28.1 bits (63), Expect = 5.8
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 6 NYLSPELQAELKLIAETLVEPGKGILAADESVSTMGKRLADIGVENTEENRRLYRQLLFT 65
Y P + A+ IA +VE G ++ V G A I E+ E +R+ + +F
Sbjct: 22 KYHFPVIDADK--IAHQVVEKGSPAY--EKIVDHFG---AQILNEDGELDRKALGERVFN 74
Query: 66 TDHEL 70
EL
Sbjct: 75 DPEEL 79
>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 440
Score = 28.6 bits (64), Expect = 6.4
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 298 LSFSYGRALQ---ASVLRAWGGRPGNVLAGQNELLARARANGCASLGHYKAGAV 348
LS++ R A++L G +PG+ +AG LL R A L ++ GA+
Sbjct: 1 LSYAELREQSARVANLLADLGVKPGDRVAG---LLPRTPELVVAILATWRVGAI 51
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.395
Gapped
Lambda K H
0.267 0.0592 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,764,816
Number of extensions: 1853491
Number of successful extensions: 1718
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1699
Number of HSP's successfully gapped: 25
Length of query: 364
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 266
Effective length of database: 6,590,910
Effective search space: 1753182060
Effective search space used: 1753182060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.2 bits)