RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy196
(364 letters)
>2pc4_A 41 kDa antigen, fructose-bisphosphate aldolase; invasion machinery,
structu genomics, PSI, protein structure initiative;
2.40A {Plasmodium falciparum} PDB: 2eph_A 1a5c_A
Length = 369
Score = 581 bits (1499), Expect = 0.0
Identities = 197/368 (53%), Positives = 239/368 (64%), Gaps = 8/368 (2%)
Query: 2 PTHFNY---LSPELQAELKLIAETLVEPGKGILAADESVSTMGKRLADIGVENTEENRRL 58
+ N L ++ EL A+ LV+ GKGILAADES T+ KR +I +ENT ENR
Sbjct: 5 TEYMNAPKKLPADVAEELATTAQKLVQAGKGILAADESTQTIKKRFDNIKLENTIENRAS 64
Query: 59 YRQLLFTTDHELGESISGVILFHDTLYEKADDGTPFVELLRQRGIIPGIKVDKGVVPLAG 118
YR LLF T LG+ ISG ILF +TL++K + G P V LL IIPGIKVDKG+V +
Sbjct: 65 YRDLLFGTK-GLGKFISGAILFEETLFQKNEAGVPMVNLLHNENIIPGIKVDKGLVNIPC 123
Query: 119 TDGETTTQGLDDLAKRCDKYKTDGCHFAKWRCVLKI--GDHTPSALAILENANVLARYAS 176
TD E +TQGLD LA+RC +Y G FAKWR VL I P+ L+I E A LARYAS
Sbjct: 124 TDEEKSTQGLDGLAERCKEYYKAGARFAKWRTVLVIDTAKGKPTDLSIHETAWGLARYAS 183
Query: 177 ICQASRIVPIVEPEVLPDGAHDLARCQKVTEAVLASVVKALHDHNVYLEGILLKPNMVTP 236
ICQ +R+VPIVEPE+L DG H + C VT+ VL+ V KAL ++ V LEG LLKPNMVT
Sbjct: 184 ICQQNRLVPIVEPEILADGPHSIEVCAVVTQKVLSCVFKALQENGVLLEGALLKPNMVTA 243
Query: 237 GASCSEKYAPSDIALATVTALQRTLPVAVPGVVFLSGGQTEEEASVHLNAINQTQALTPW 296
G C+ K D+ TV L+RT+P A+PGVVFLSGGQ+EEEASV+LN+IN PW
Sbjct: 244 GYECTAKTTTQDVGFLTVRTLRRTVPPALPGVVFLSGGQSEEEASVNLNSINA-LGPHPW 302
Query: 297 ALSFSYGRALQASVLRAWGGRPGNVLAGQNELLARARANGCASLGHYKAGAVKGVAGERD 356
AL+FSYGRALQASVL W G+ NV + LL RA AN A+ G YK GA AG
Sbjct: 303 ALTFSYGRALQASVLNTWQGKKENVAKAREVLLQRAEANSLATYGKYKGGAGGENAGAS- 361
Query: 357 LFVKDHAY 364
L+ K + Y
Sbjct: 362 LYEKKYVY 369
>2qap_A Fructose-1,6-bisphosphate aldolase; beta barrel,
fructose-1,6-bisphosphate teminal tail, lyase; 1.59A
{Leishmania mexicana} SCOP: c.1.10.1 PDB: 2qdg_A*
2qdh_A* 1epx_A 1f2j_A
Length = 391
Score = 576 bits (1487), Expect = 0.0
Identities = 175/363 (48%), Positives = 221/363 (60%), Gaps = 4/363 (1%)
Query: 3 THFNYLSPELQAELKLIAETLVEPGKGILAADESVSTMGKRLADIGVENTEENRRLYRQL 62
+N L ++EL + L PGKG+LAADES+ + KR IG+ NTEE+RR YR L
Sbjct: 32 PAYNRLKTPYESELIATVKKLTTPGKGLLAADESIGSCTKRFQPIGLSNTEEHRRQYRAL 91
Query: 63 LFTTDHELGESISGVILFHDTLYEKADDGTPFVELLRQRGIIPGIKVDKGVVPL-AGTDG 121
+ + + ISGVIL +T+ +KA +G F E L RG++PGIK D G+ PL G +G
Sbjct: 92 MLEAE-GFEQYISGVILHDETVGQKASNGQTFPEYLTARGVVPGIKTDMGLCPLLEGAEG 150
Query: 122 ETTTQGLDDLAKRCDKYKTDGCHFAKWRCVLKIGDHTPSALAILENANVLARYASICQAS 181
E T+GLD KR Y GC F KWR V KI + T S A+ NA LARYA + Q S
Sbjct: 151 EQMTEGLDGYVKRASAYYKKGCRFCKWRNVYKIQNGTVSESAVRFNAETLARYAILSQMS 210
Query: 182 RIVPIVEPEVLPDGAHDLARCQKVTEAVLASVVKALHDHNVYLEGILLKPNMVTPGASCS 241
+VPIVEPEV+ DG HD+ CQ+V+E V VV AL H V EG LLKPNMV PGA
Sbjct: 211 GLVPIVEPEVMIDGKHDIDTCQRVSEHVWREVVAALQRHGVIWEGCLLKPNMVVPGAESG 270
Query: 242 EKYAPSDIALATVTALQRTLPVAVPGVVFLSGGQTEEEASVHLNAINQTQALTPWALSFS 301
+ AP +A TV L RT+P +PGV+FLSGG +E +AS +LNAIN + P+ LSFS
Sbjct: 271 KTAAPEQVAHYTVMTLARTMPAMLPGVMFLSGGLSEVQASEYLNAINNSPLPRPYFLSFS 330
Query: 302 YGRALQASVLRAWGGRPGNVLAGQNELLARARANGCASLGHYKAGAVKGVAGERDLFVKD 361
Y RALQ+S L+AWGG+ + AG+ L RAR N A LG YK A L+VK
Sbjct: 331 YARALQSSALKAWGGKESGLAAGRRAFLHRARMNSMAQLGKYKRSDDD--ASSSSLYVKG 388
Query: 362 HAY 364
+ Y
Sbjct: 389 NTY 391
>3bv4_A Fructose-bisphosphate aldolase A; lyase, acetylation, glycolysis,
phosphoprotein, schiff base; HET: 13P; 1.70A
{Oryctolagus cuniculus} PDB: 1ado_A* 1ewd_A 1zai_A*
1zah_A* 1zaj_A* 1zal_A 2ot0_A 2ot1_A* 2qut_A 2quv_A
3lge_A 3tu9_A* 3b8d_A 6ald_A* 1ex5_A 1ewe_A 2quu_A
3dfn_A 3dfo_A 3dfp_A ...
Length = 341
Score = 571 bits (1473), Expect = 0.0
Identities = 228/341 (66%), Positives = 271/341 (79%)
Query: 5 FNYLSPELQAELKLIAETLVEPGKGILAADESVSTMGKRLADIGVENTEENRRLYRQLLF 64
L+PE + EL IA +V PGKGILAADES ++ KRL IG ENTEENRR YRQLL
Sbjct: 1 HPALTPEQKKELSDIAHRIVAPGKGILAADESTGSIAKRLQSIGTENTEENRRFYRQLLL 60
Query: 65 TTDHELGESISGVILFHDTLYEKADDGTPFVELLRQRGIIPGIKVDKGVVPLAGTDGETT 124
T D + I GVILFH+TLY+KADDG PF ++++ +G + GIKVDKGVVPLAGT+GETT
Sbjct: 61 TADDRVNPCIGGVILFHETLYQKADDGRPFPQVIKSKGGVVGIKVDKGVVPLAGTNGETT 120
Query: 125 TQGLDDLAKRCDKYKTDGCHFAKWRCVLKIGDHTPSALAILENANVLARYASICQASRIV 184
TQGL L++RC +YK DG FAKWRCVLKIG+HTPSALAI+ENANVLARYASICQ + IV
Sbjct: 121 TQGLVGLSERCAQYKKDGADFAKWRCVLKIGEHTPSALAIMENANVLARYASICQQNGIV 180
Query: 185 PIVEPEVLPDGAHDLARCQKVTEAVLASVVKALHDHNVYLEGILLKPNMVTPGASCSEKY 244
PIVEPE+LPDG HDL RCQ VTE VLA+V KAL DH++YLEG LLKPNMVTPG +C++KY
Sbjct: 181 PIVEPEILPDGDHDLKRCQYVTEKVLAAVYKALSDHHIYLEGTLLKPNMVTPGHACTQKY 240
Query: 245 APSDIALATVTALQRTLPVAVPGVVFLSGGQTEEEASVHLNAINQTQALTPWALSFSYGR 304
+ +IA+ATVTAL+RT+P AV GV FLSGGQ+EEEAS++LNAIN+ L PWAL+FSYGR
Sbjct: 241 SHEEIAMATVTALRRTVPPAVTGVTFLSGGQSEEEASINLNAINKCPLLKPWALTFSYGR 300
Query: 305 ALQASVLRAWGGRPGNVLAGQNELLARARANGCASLGHYKA 345
ALQAS L+AWGG+ N+ A Q E + RA AN A G Y +
Sbjct: 301 ALQASALKAWGGKKENLKAAQEEYVKRALANSLACQGKYTS 341
>3mbd_A Fructose-bisphosphate aldolase; glycolysis, lyase, schiff base;
2.00A {Encephalitozoon cuniculi} PDB: 3mbf_A* 3qrh_A
Length = 342
Score = 555 bits (1432), Expect = 0.0
Identities = 136/338 (40%), Positives = 198/338 (58%), Gaps = 3/338 (0%)
Query: 6 NYLSPELQAELKLIAETLVEPGKGILAADESVSTMGKRLADIGVENTEENRRLYRQLLFT 65
+ + + L + A+ ++E GKGILAADE+ T+G+R +G+ NTEENRR +R++LF+
Sbjct: 4 SMMDCDHLLRLGMTAKKILENGKGILAADETPKTLGRRFEKLGITNTEENRRKFREILFS 63
Query: 66 TDHELGESISGVILFHDTLYEKADDGTPFVELLRQRGIIPGIKVDKGVVPLAGTDGETTT 125
T + I GVIL +T + + G P ELL+++GI GIK+DKG++ + E +
Sbjct: 64 TK-GIERYIGGVILNQETFEQTSGSGVPLTELLKKKGIEIGIKLDKGLIDY--KEKEKIS 120
Query: 126 QGLDDLAKRCDKYKTDGCHFAKWRCVLKIGDHTPSALAILENANVLARYASICQASRIVP 185
GL+DL RC FAKWR + D PS I EN ++LA+YA ICQ + +VP
Sbjct: 121 VGLEDLDLRCKSSAFKDATFAKWRSLFYFYDGIPSEDCINENCSILAKYAIICQKNGLVP 180
Query: 186 IVEPEVLPDGAHDLARCQKVTEAVLASVVKALHDHNVYLEGILLKPNMVTPGASCSEKYA 245
IVEPEV +G + + R +VT +L++++K L+ VY+ G+L+K + VT G +EKY
Sbjct: 181 IVEPEVFLEGDYSMKRSYEVTRQILSTLMKYLNYELVYIPGVLIKASYVTSGQLSNEKYT 240
Query: 246 PSDIALATVTALQRTLPVAVPGVVFLSGGQTEEEASVHLNAINQTQALTPWALSFSYGRA 305
P +A T+ AL T+P +PG+VFLSGG E+A LNAIN + W+LSFS+ RA
Sbjct: 241 PKKVATFTLRALLSTIPCGIPGIVFLSGGHGSEDAIGFLNAINMERGCRTWSLSFSFARA 300
Query: 306 LQASVLRAWGGRPGNVLAGQNELLARARANGCASLGHY 343
L VL W G N+ Q LL + + G
Sbjct: 301 LTDGVLETWRGDDSNIEEAQKILLETSFKACRGAEGKL 338
>3kx6_A Fructose-bisphosphate aldolase; ssgcid, NIH, niaid, SBRI, UW,
emerald biostructures, glycolysis, lyase, STRU genomics;
HET: CIT; 2.10A {Babesia bovis}
Length = 379
Score = 556 bits (1434), Expect = 0.0
Identities = 193/360 (53%), Positives = 238/360 (66%), Gaps = 7/360 (1%)
Query: 7 YLSPELQAELKLIAETLVEPGKGILAADESVSTMGKRLADIGVENTEENRRLYRQLLFTT 66
LS E EL A + PGKGILAADES T+ KR ++GVENTE+NR YR +LFTT
Sbjct: 25 KLSQERAKELAENASFIASPGKGILAADESTGTIQKRFDNVGVENTEKNRAEYRSILFTT 84
Query: 67 DHELGESISGVILFHDTLYEKADDGTPFVELLRQRGIIPGIKVDKGVVPLAGTDGETTTQ 126
LG+ ISG ILF +TL+++A +G V+LLR GI+PGIKVDKG+V + TD E +T
Sbjct: 85 K-GLGKYISGCILFEETLFQQAPNGQNMVDLLRAEGILPGIKVDKGLVTIPNTDEEVSTT 143
Query: 127 GLDDLAKRCDKYKTDGCHFAKWRCVLKIG--DHTPSALAILENANVLARYASICQASRIV 184
GLD LA+RC KY G FAKWR VL I + PS L+ILE A+ LARYA+ICQ + +V
Sbjct: 144 GLDGLAERCQKYYNAGARFAKWRAVLSIDVKKNKPSNLSILETAHTLARYAAICQENGLV 203
Query: 185 PIVEPEVLPDGAHDLARCQKVTEAVLASVVKALHDHNVYLEGILLKPNMVTPGASCSEKY 244
PIVEPE+L DG H + C +VTE VLA+V KAL+DH V LEG LLKPNMVT G C +K
Sbjct: 204 PIVEPEILADGDHSIEVCAEVTERVLAAVFKALNDHKVLLEGALLKPNMVTQGVDCKDKP 263
Query: 245 APSDIALATVTALQRTLPVAVPGVVFLSGGQTEEEASVHLNAINQTQALTPWALSFSYGR 304
AP + T AL+RT+P A+PGV+FLSGGQ+E A+ HLN IN+ PW+LSFSYGR
Sbjct: 264 APQTVGFLTSRALRRTVPPALPGVMFLSGGQSESMATRHLNEINKCNK-HPWSLSFSYGR 322
Query: 305 ALQASVLRAWGGRPGNVLAGQNELLARARANGCASLGHYKAGAVKGVAGERDLFVKDHAY 364
ALQ+SVL+ W G N A Q+ L+ A+ N ASLG K LF + Y
Sbjct: 323 ALQSSVLKTWNGSMSNAAAAQDVLMKLAQQNSEASLGSLKTDLSDDGES---LFEAKYIY 379
>3mmt_A Fructose-bisphosphate aldolase; ssgcid, structural genomics,
seattle structural GE center for infectious disease,
hydrolase; HET: 2FP; 2.35A {Bartonella henselae}
Length = 347
Score = 545 bits (1406), Expect = 0.0
Identities = 172/347 (49%), Positives = 221/347 (63%), Gaps = 6/347 (1%)
Query: 10 PELQAELKLIAETLVEPGKGILAADESVSTMGKRLADIGVENTEENRRLYRQLLFTTDHE 69
+ L+ IA TLV GKGILAADES +T+GKR IGVE TE+NRR YR++LFT
Sbjct: 3 GSMNERLEDIALTLVGAGKGILAADESTATIGKRFESIGVECTEDNRRAYREMLFTAKEA 62
Query: 70 LGESISGVILFHDTLYEKADDGTPFVELLRQRGIIPGIKVDKGVVPLAGTDGETTTQGLD 129
+ +ISGVILF +TL +KA G +L+R G +PGIKVD G PLA ET T+GLD
Sbjct: 63 MESAISGVILFDETLRQKASTGQMLTDLIRDAGAVPGIKVDTGAKPLAAFPQETITEGLD 122
Query: 130 DLAKRCDKYKTDGCHFAKWRCVLKIGDHT-PSALAILENANVLARYASICQASRIVPIVE 188
L +R Y T G FAKWR V+ I T P+ AI +NA LARYA++CQ + +VPIVE
Sbjct: 123 GLRERLKDYYTLGARFAKWRAVIAIDAQTLPTRGAISQNAQALARYAALCQEAGLVPIVE 182
Query: 189 PEVLPDGA---HDLARCQKVTEAVLASVVKALHDHNVYLEGILLKPNMVTPGASCSEKYA 245
PEVL DG H + RC +VT+ VL +V K L + V EG++LKPNMV G +
Sbjct: 183 PEVLMDGPSRQHSITRCFEVTKVVLHTVFKELFEARVLFEGMILKPNMVIDGKDA-RIAS 241
Query: 246 PSDIALATVTALQRTLPVAVPGVVFLSGGQTEEEASVHLNAINQTQALTPWALSFSYGRA 305
++A TV L++T+P AVPG+ FLSGGQT+EEA+ HL+A+N PW L+FSYGRA
Sbjct: 242 VEEVAEKTVHVLKQTVPAAVPGIAFLSGGQTDEEATAHLSAMNA-LGALPWKLTFSYGRA 300
Query: 306 LQASVLRAWGGRPGNVLAGQNELLARARANGCASLGHYKAGAVKGVA 352
LQA+ L+AW G+ N++ Q RAR N A+LG + K A
Sbjct: 301 LQAAALKAWAGKNENIVVAQKAFCHRARMNHLAALGQWTKDQEKSCA 347
>2iqt_A Fructose-bisphosphate aldolase class 1; TIM berrel, structural
genomics, PSI-2; 2.46A {Porphyromonas gingivalis}
Length = 296
Score = 395 bits (1016), Expect = e-138
Identities = 62/315 (19%), Positives = 111/315 (35%), Gaps = 46/315 (14%)
Query: 19 IAETLVEPGKGILAADESVSTMGKRLADIGVENTE--------ENRRLYRQLLFTTDHEL 70
+ + + + A D+S + K L G++ + R + T+
Sbjct: 8 QLQQMRQAPGFVGALDQSGGSTPKALKAYGIQPDAYQSEEEMFDLIHQMRTRMITSPAFA 67
Query: 71 GESISGVILFHDTLYEKADDGTPFVELLRQRGIIPGIKVDKGVVPLAGTDGETTTQGLDD 130
I GVILF T+ K + L +R I+P +KVDKG+ A +G + +
Sbjct: 68 TGKIIGVILFERTMRGKIEGMPTADFLWEKRHIVPFLKVDKGLQDEA--NGVQLMKPFPE 125
Query: 131 LAKRCDKYKTDGCHFAKWRCVLKIGDHTPSALAILENANVLARYASICQASRIVPIVEPE 190
L K C++ K R V+K + I + ++ + +VPI+EPE
Sbjct: 126 LGKLCEEAVGYHVFGTKMRSVIKQ----ANEQGIRDIVEQQFQWGKEILSHGLVPILEPE 181
Query: 191 VLPDGAHDLARCQKVTEAVLASVVKALHDHNVYLEGILLKPNMVTPGASCSEKYAPSDIA 250
V + + +LA + E ++LK + T E
Sbjct: 182 VDIHCPEKAKAEEILKRELLA-------QLDKMTEPVMLKITIPTVDNFYKEIIEHP--- 231
Query: 251 LATVTALQRTLPVAVPGVVFLSGGQTEEEASVHLNAINQ---------TQALTPWALSFS 301
+ VV LSGG + E+A+ L+ + + L+
Sbjct: 232 -------------MMLRVVALSGGYSREQANELLSRNHGVIASFSRALVEGLSARQTDAE 278
Query: 302 YGRALQASVLRAWGG 316
+ L+AS+ +
Sbjct: 279 FNAMLEASIEDVYQA 293
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.1 bits (145), Expect = 6e-10
Identities = 72/424 (16%), Positives = 122/424 (28%), Gaps = 139/424 (32%)
Query: 2 PT--HFNYLSPELQAELKLIAETLVEPGKGILAADESVST---MGKRLADIGVENTEENR 56
PT F +LQ + + L EP +G A DE + +GK L +
Sbjct: 23 PTASFFIAS--QLQEQF---NKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKV 77
Query: 57 RLYRQLL------FTTDHELGESISGVILFHDTLYE-KADDGTPFVELLRQRGII----- 104
+ Q+L F + G I H + ++ T L++ + +I
Sbjct: 78 GQFDQVLNLCLTEFENCYLEGNDI------HALAAKLLQENDTT---LVKTKELIKNYIT 128
Query: 105 ----PGIKVDKGVVPL---AGTDGETTT------QG-----LDDLAK------------- 133
DK A +G QG ++L
Sbjct: 129 ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLI 188
Query: 134 ---------------RCDKYKTDGCHFAKWRCVLKIGDHTPSALAILENANV-------- 170
+K T G + +W L+ +TP L + +
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQGLNILEW---LENPSNTPDK-DYLLSIPISCPLIGVI 244
Query: 171 -LARYASICQASRIVPIVEPEVLPDGAHDLARCQK--VTEAVLAS----------VVKAL 217
LA Y + P L + VT +A V KA+
Sbjct: 245 QLAHYVVTAKLLG----FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI 300
Query: 218 HDHNVYLEGILLKPNMVTPGASCSEKYAPSDIALATVT---ALQRTLP---VAVPGVVFL 271
L I G C E Y + + + + +P +++ L
Sbjct: 301 T----VLFFI---------GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN---L 344
Query: 272 SGGQTEEEASVHLNAINQTQALTPW-ALSFSYGRALQASVLRAWGGRPGNVLAGQNELLA 330
+ Q ++ ++N N +S G + V+ G P + L G N L
Sbjct: 345 TQEQVQD----YVNKTNSHLPAGKQVEISLVNGA--KNLVV---SGPPQS-LYGLNLTLR 394
Query: 331 RARA 334
+A+A
Sbjct: 395 KAKA 398
Score = 49.3 bits (117), Expect = 2e-06
Identities = 55/321 (17%), Positives = 86/321 (26%), Gaps = 134/321 (41%)
Query: 33 ADESV-STMGKRLADIGVENTEEN------------RRLYRQLLFTT-----------DH 68
AD T G + DI + N R Y ++F T
Sbjct: 1649 ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFK 1708
Query: 69 ELGESISGVILFHD--TLYEKADDGTPF------------VELLRQRGIIPGIKVDKGVV 114
E+ E + + L T F E L+ +G+IP
Sbjct: 1709 EINEHSTSYTFRSEKGLLSA-----TQFTQPALTLMEKAAFEDLKSKGLIPADAT----- 1758
Query: 115 PLAGTD---GETTTQGLDDLAKRCDKYKTDGCHFAKWRCVLKIGDHTPSALAILENANVL 171
AG GE Y +ALA L A+V+
Sbjct: 1759 -FAG--HSLGE---------------Y---------------------AALASL--ADVM 1777
Query: 172 ARYASICQASRIVPIVEPEVLPDGAHDLARCQKVTEAVLASVVKALHDHNVYLEGIL-LK 230
SI +V R + AV + G++ +
Sbjct: 1778 ----SIESLVEVV------------F--YRGMTMQVAV------PRDELGRSNYGMIAIN 1813
Query: 231 PNMVTPGASCSE---KYAPSDIALATVTALQRTLPVA---VPGVVFLSGGQTE--EEASV 282
P V AS S+ +Y + T ++ + V +++ G + +
Sbjct: 1814 PGRV--AASFSQEALQYVVERVGKRTGWLVE----IVNYNVENQQYVAAGDLRALDTVTN 1867
Query: 283 HLNAINQTQALTPWAL--SFS 301
LN I Q + L S S
Sbjct: 1868 VLNFIK-LQKIDIIELQKSLS 1887
Score = 42.3 bits (99), Expect = 2e-04
Identities = 32/199 (16%), Positives = 56/199 (28%), Gaps = 68/199 (34%)
Query: 159 PSALAILENAN--VLARYA-SICQASRIVPIVEPEVLPDGAHDLARCQKVTEAVLASVVK 215
+A + A+ Y SI P+ + G + +++ E A + +
Sbjct: 1640 KAAQDVWNRADNHFKDTYGFSILDIVINNPV-NLTIHFGGE----KGKRIRENYSAMIFE 1694
Query: 216 ALHDHNVYLEGILLKPNMVTPGASCSEKYAPSDIALATVTALQRTLPVAVPGVVFLSGGQ 275
+ D + E I + N + F +
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTS------------------------------YTF--RSE 1722
Query: 276 TEEEASVHLNAINQTQ-ALTPWALSFSYGRALQASVLRAWGGRPGN-VLAGQNELLARAR 333
L+A TQ ALT + + L++ G P + AG
Sbjct: 1723 KGL-----LSATQFTQPALT--LMEKA-----AFEDLKSKGLIPADATFAGH-------- 1762
Query: 334 ANGCASLGHYKA-GAVKGV 351
SLG Y A ++ V
Sbjct: 1763 -----SLGEYAALASLADV 1776
Score = 38.5 bits (89), Expect = 0.003
Identities = 40/238 (16%), Positives = 74/238 (31%), Gaps = 83/238 (34%)
Query: 127 GLD---------DLAKRCDKYKTDGCHFAKWRCVLKIGDHTPSALAILENA----NVLAR 173
G+D D+ R D + D F+ +L I + P L I +
Sbjct: 1632 GMDLYKTSKAAQDVWNRADNHFKDTYGFS----ILDIVINNPVNLTIHFGGEKGKRIREN 1687
Query: 174 YASICQASRIVPIVEPEVLPDGAHDLARCQKVTEAVLASVVKALHDHNVYLEGILLK--- 230
Y+++ E + DG + +K+ + + +G+L
Sbjct: 1688 YSAMIF----------ETIVDGK---LKTEKIFKEINEHSTSYTFRSE---KGLLSATQF 1731
Query: 231 --PNMVTPGASC-----SEKYAPSDIALA--TV---TALQRTLPVAVPGVVFLSGGQTEE 278
P + + S+ P+D A ++ AL ++ V+ +
Sbjct: 1732 TQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAAL-----ASLADVMSI------- 1779
Query: 279 EASVHLNAINQTQALTPWALSFSYGRALQASVLRAWGGR---------PGNVLAGQNE 327
E+ V + F G +Q +V R GR PG V A ++
Sbjct: 1780 ESLVEV--------------VFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ 1823
Score = 28.5 bits (63), Expect = 4.7
Identities = 36/203 (17%), Positives = 61/203 (30%), Gaps = 49/203 (24%)
Query: 3 THFN-YLSPELQAELKLI--AETLV---EPGKGILAADESVSTMGKRLADIGVE-NTEEN 55
N +L Q E+ L+ A+ LV P +S+ + L +++
Sbjct: 354 NKTNSHLPAGKQVEISLVNGAKNLVVSGPP--------QSLYGLNLTLRKAKAPSGLDQS 405
Query: 56 RRLY--RQLLFTTDHELGESISGVIL-----FHDTLYEKADDGTPFVELLRQRGIIPGIK 108
R + R+L F+ L FH L A D + L + +
Sbjct: 406 RIPFSERKLKFSN----------RFLPVASPFHSHLLVPASDL--INKDLVKNNVS--FN 451
Query: 109 VDKGVVPLAGT-DGETTTQGLDDLAKR-CDKYKTDGCHFAKWRCVLKIG-----DHTP-- 159
+P+ T DG +++R D W + D P
Sbjct: 452 AKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK---WETTTQFKATHILDFGPGG 508
Query: 160 -SALAILENANVLARYASICQAS 181
S L +L + N + A
Sbjct: 509 ASGLGVLTHRNKDGTGVRVIVAG 531
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.4 bits (109), Expect = 1e-05
Identities = 47/365 (12%), Positives = 100/365 (27%), Gaps = 107/365 (29%)
Query: 11 ELQAELKLIAETLVEPGKGILAA----DESV-STMGKRL--ADIGVENTEENR-----RL 58
EL+ ++ + ++ GK +A V M ++ ++ N+ E +L
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205
Query: 59 YRQLL--FTTDHELGESISGVI---------LFHDTLYEKA----DDGTPFVELLRQRGI 103
Q+ +T+ + +I I L YE + V+
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN----VQ------- 254
Query: 104 IPGIKVDKGVVPLAGTDGETTTQGLDDLAKRC-------DKYKTDGCHFAKWRCVLKIGD 156
+ + C K TD A + + D
Sbjct: 255 ------NAKAW--------------NAFNLSCKILLTTRFKQVTDFLSAAT-TTHISL-D 292
Query: 157 HTPSALAILENANVLARYASIC------QASRIVPIVE---PEVLPDGAH-----DLARC 202
H L E ++L +Y + P E + DG C
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352
Query: 203 QKVTEAVLASVVKALHDHNV---YLE-GILLKPNMVTPGASC-----SEKYAPSDIA--L 251
K+T + +S + L + + + K + L
Sbjct: 353 DKLTTIIESS-LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411
Query: 252 ATVTALQR---TLPVAVPGVVFLSGGQTEEEASVH---LNAINQTQALTPWALS------ 299
+ +++ +++P + + E E ++H ++ N + L
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
Query: 300 --FSY 302
+S+
Sbjct: 472 YFYSH 476
Score = 35.6 bits (81), Expect = 0.031
Identities = 27/181 (14%), Positives = 61/181 (33%), Gaps = 40/181 (22%)
Query: 9 SPELQAELKLIAETLVEPGKGILAADESVSTMGKRL-----ADIGVENTEENRRLYRQL- 62
+P L +IAE++ + G+ D +L + + V E R+++ +L
Sbjct: 326 NPRR---LSIIAESIRD---GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379
Query: 63 LFTTDHELGESI-SGV--ILFHDTLYEKADDGTPFVELLRQRGIIPGIKVDKGVVPLAGT 119
+F I + + +++ D + V L + ++ + + + +
Sbjct: 380 VFPPS----AHIPTILLSLIWFDVIKSDVMV---VVNKLHKYSLVEK-QPKESTISIPSI 431
Query: 120 DGETTTQGLDDLA--KRC-DKYKTDGCHFAKWRCVLK---------IGDHTPSALAILEN 167
E + ++ A + D Y F + IG H L +E+
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKT-FDSDDLIPPYLDQYFYSHIGHH----LKNIEH 486
Query: 168 A 168
Sbjct: 487 P 487
Score = 31.4 bits (70), Expect = 0.56
Identities = 29/204 (14%), Positives = 54/204 (26%), Gaps = 62/204 (30%)
Query: 15 ELKLIAETLVEPGKGILAADESVSTMGKRLADIGVE---NTEENRRLYRQLL-------- 63
++ ++ L + ++ ST+ + I +E E L+R ++
Sbjct: 403 DVMVVVNKLHK--YSLVEKQPKESTI--SIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458
Query: 64 FTTDHELGESISGVILF----HDTLYEKADDGTPFVEL------LRQRGIIPGIKVDKGV 113
F +D + + H E + T F + L Q K+
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ-------KIRHDS 511
Query: 114 VPLAGTDGETTTQGLDDLAKRCDKYK---TDGC-----------HF----------AKWR 149
+ T L L YK D F +K+
Sbjct: 512 TAWNASGSILNT--LQQL----KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYT 565
Query: 150 CVLKIGDHTPSALAILENANVLAR 173
+L+I E + R
Sbjct: 566 DLLRIALMAEDEAIFEEAHKQVQR 589
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.39
Identities = 11/45 (24%), Positives = 12/45 (26%), Gaps = 18/45 (40%)
Query: 126 QGLDDLAKRCDKYKTDGCHFAKWRCVLKIGDHTPSALAILENANV 170
Q L L Y D P ALAI A +
Sbjct: 20 QALKKLQASLKLYADDS---------------AP-ALAI--KATM 46
Score = 28.8 bits (63), Expect = 1.6
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 6/28 (21%)
Query: 11 ELQAELKLIAETLVEPGKG-ILAADESV 37
+LQA LKL A LA ++
Sbjct: 24 KLQASLKLYA-----DDSAPALAIKATM 46
Score = 27.2 bits (59), Expect = 5.5
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 11/32 (34%)
Query: 279 EASVHLNAINQTQALTPWALSFSYGRALQASV 310
+AS+ L A + AL A++A++
Sbjct: 26 QASLKLYADDSAPAL-----------AIKATM 46
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP:
c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Length = 190
Score = 29.4 bits (66), Expect = 1.3
Identities = 23/158 (14%), Positives = 47/158 (29%), Gaps = 30/158 (18%)
Query: 88 ADDGTPFVELLRQRGIIPGIKVDKGVVPLAGTDGETTTQGLDDLAKRCDKYKTDGCHFAK 147
+ LL + + VV A G+T+ QGL L +++
Sbjct: 17 MSASAAWPALLNDK-----WQSKTSVVN-ASISGDTSQQGLARLPALLKQHQPRWVL--- 67
Query: 148 WRCVLKIGDHTPSALAILENANVLARYASICQASR----IVPIVEPEVLPDGAHDLARCQ 203
+ L + I Q + +++ + + +
Sbjct: 68 ------VELGGNDGLRGFQPQQTEQTLRQILQDVKAANAEPLLMQIRLPAN------YGR 115
Query: 204 KVTEAVLASVVKALHDHNV-----YLEGILLKPNMVTP 236
+ EA A K + +V ++E + LKP +
Sbjct: 116 RYNEAFSAIYPKLAKEFDVPLLPFFMEEVYLKPQWMQD 153
>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding,
tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate
aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB:
3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A
Length = 332
Score = 29.1 bits (64), Expect = 2.3
Identities = 26/207 (12%), Positives = 57/207 (27%), Gaps = 11/207 (5%)
Query: 113 VVPLAGTDGETTTQG-LDDLA--KRCDKYKTDGCHFAKWRCVLKIGDHTPSALAILENAN 169
++ T + T L D + K G K+ + ++
Sbjct: 91 LLAYEKTGYDANTTSRLPDCLVDWSIKRLKEAGADAVKFLLYYDVDG---DPQVNVQKQA 147
Query: 170 VLARYASICQASRIVPIVEPEVLPDGAHDLARCQ--KVTEAVLASVVKALHDHNVYLEGI 227
+ R S CQA I +E + + + + KV + +K ++ +
Sbjct: 148 YIERIGSECQAEDIPFFLEILTYDETISNNSSVEFAKVKVHKVNDAMKVFSAERFGIDVL 207
Query: 228 LLKPNMVTPGASCSEKYAPSDIALATVTALQRTLPVAVPGVVFLSGGQTEEEASVHLNAI 287
++ + + A + ++LS G + E +
Sbjct: 208 KVEVPVNMVYVEGFAEGEVVYSKEEAAQAFREQEASTDLPYIYLSAGVSAELF---QETL 264
Query: 288 NQTQALTPWALSFSYGRALQASVLRAW 314
GRA A ++ +
Sbjct: 265 VFAHKAGAKFNGVLCGRATWAGSVQVY 291
>3cc1_A BH1870 protein, putative alpha-N-acetylgalactosaminidase;
structural genomic center for structural genomics, JCSG;
HET: MSE PGE PG4 P33; 2.00A {Bacillus halodurans c-125}
Length = 433
Score = 29.0 bits (64), Expect = 2.8
Identities = 11/73 (15%), Positives = 21/73 (28%), Gaps = 8/73 (10%)
Query: 136 DKYKTDGCHFAKWRCVLKIGDH----TPSALAILENANVLARYASICQASRIVPIVEPEV 191
D+ T +A L G L++L N +L+ + +
Sbjct: 299 DEQLTMMNLWAICHSPLMFGGELRDNDEWTLSLLTNEGILSINQKSVLNRFVYREEDKVA 358
Query: 192 ----LPDGAHDLA 200
+G +A
Sbjct: 359 WAANGRNGEAYVA 371
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 109
Score = 27.1 bits (60), Expect = 4.7
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 9/58 (15%)
Query: 48 GVENTEENRRLY-RQLLFTTDHE--------LGESISGVILFHDTLYEKADDGTPFVE 96
G + N RL+ + E + E + VI++ + + G FVE
Sbjct: 1 GSSGSSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVE 58
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin,
electron transport; HET: FMN; 1.90A {Chlamydomonas
reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Length = 109
Score = 26.7 bits (60), Expect = 5.1
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 10/44 (22%)
Query: 71 GESISGVILFHDTLYEKADDGTPFVELLRQRGIIPGIKVDKGVV 114
GE+ S +L Y K DGTPF LL + P IK G V
Sbjct: 64 GEACSVRLLN----YRK--DGTPFWNLLT---VTP-IKTPDGRV 97
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing,
ATP-binding, chromophore, flavoprotein, FMN, kinase,
membrane, nucleotide-binding; HET: FMN; 2.00A
{Arabidopsis thaliana} PDB: 2z6c_A*
Length = 130
Score = 26.4 bits (59), Expect = 7.9
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 10/44 (22%)
Query: 71 GESISGVILFHDTLYEKADDGTPFVELLRQRGIIPGIKVDKGVV 114
G+S G +L Y+K DGTPF LL + P IK D+G
Sbjct: 77 GKSYCGRLLN----YKK--DGTPFWNLLT---VTP-IKDDQGNT 110
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.395
Gapped
Lambda K H
0.267 0.0693 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,662,828
Number of extensions: 359692
Number of successful extensions: 901
Number of sequences better than 10.0: 1
Number of HSP's gapped: 873
Number of HSP's successfully gapped: 29
Length of query: 364
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 269
Effective length of database: 4,049,298
Effective search space: 1089261162
Effective search space used: 1089261162
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.2 bits)