RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy196
(364 letters)
>d1zaia1 c.1.10.1 (A:1-363) Fructose-1,6-bisphosphate aldolase
{Rabbit (Oryctolagus cuniculus), muscle isozyme [TaxId:
9986]}
Length = 363
Score = 432 bits (1113), Expect = e-153
Identities = 237/363 (65%), Positives = 281/363 (77%)
Query: 2 PTHFNYLSPELQAELKLIAETLVEPGKGILAADESVSTMGKRLADIGVENTEENRRLYRQ 61
P L+PE + EL IA +V PGKGILAADES ++ KRL IG ENTEENRR YRQ
Sbjct: 1 PHSHPALTPEQKKELSDIAHRIVAPGKGILAADESTGSIAKRLQSIGTENTEENRRFYRQ 60
Query: 62 LLFTTDHELGESISGVILFHDTLYEKADDGTPFVELLRQRGIIPGIKVDKGVVPLAGTDG 121
LL T D + I GVILFH+TLY+KADDG PF ++++ +G + GIKVDKGVVPLAGT+G
Sbjct: 61 LLLTADDRVNPCIGGVILFHETLYQKADDGRPFPQVIKSKGGVVGIKVDKGVVPLAGTNG 120
Query: 122 ETTTQGLDDLAKRCDKYKTDGCHFAKWRCVLKIGDHTPSALAILENANVLARYASICQAS 181
ETTTQGLD L++RC +YK DG FAKWRCVLKIG+HTPSALAI+ENANVLARYASICQ +
Sbjct: 121 ETTTQGLDGLSERCAQYKKDGADFAKWRCVLKIGEHTPSALAIMENANVLARYASICQQN 180
Query: 182 RIVPIVEPEVLPDGAHDLARCQKVTEAVLASVVKALHDHNVYLEGILLKPNMVTPGASCS 241
IVPIVEPE+LPDG HDL RCQ VTE VLA+V KAL DH++YLEG LLKPNMVTPG +C+
Sbjct: 181 GIVPIVEPEILPDGDHDLKRCQYVTEKVLAAVYKALSDHHIYLEGTLLKPNMVTPGHACT 240
Query: 242 EKYAPSDIALATVTALQRTLPVAVPGVVFLSGGQTEEEASVHLNAINQTQALTPWALSFS 301
+KY+ +IA+ATVTAL+RT+P AV GV FLSGGQ+EEEAS++LNAIN+ L PWAL+FS
Sbjct: 241 QKYSHEEIAMATVTALRRTVPPAVTGVTFLSGGQSEEEASINLNAINKCPLLKPWALTFS 300
Query: 302 YGRALQASVLRAWGGRPGNVLAGQNELLARARANGCASLGHYKAGAVKGVAGERDLFVKD 361
YGRALQAS L+AWGG+ N+ A Q E + RA AN A G Y G A LF+ +
Sbjct: 301 YGRALQASALKAWGGKKENLKAAQEEYVKRALANSLACQGKYTPSGQAGAAASESLFISN 360
Query: 362 HAY 364
HAY
Sbjct: 361 HAY 363
>d1qo5a_ c.1.10.1 (A:) Fructose-1,6-bisphosphate aldolase {Human
(Homo sapiens), liver isozyme [TaxId: 9606]}
Length = 360
Score = 411 bits (1058), Expect = e-144
Identities = 211/356 (59%), Positives = 259/356 (72%)
Query: 4 HFNYLSPELQAELKLIAETLVEPGKGILAADESVSTMGKRLADIGVENTEENRRLYRQLL 63
F L+ E + EL IA+++V GKGILAADESV TMG RL I VENTEENRR +R++L
Sbjct: 3 RFPALTQEQKKELSEIAQSIVANGKGILAADESVGTMGNRLQRIKVENTEENRRQFREIL 62
Query: 64 FTTDHELGESISGVILFHDTLYEKADDGTPFVELLRQRGIIPGIKVDKGVVPLAGTDGET 123
F+ D + +SI GVILFH+TLY+K G F +L+++GI+ GIK+D+G PLAGT+ ET
Sbjct: 63 FSVDSSINQSIGGVILFHETLYQKDSQGKLFRNILKEKGIVVGIKLDQGGAPLAGTNKET 122
Query: 124 TTQGLDDLAKRCDKYKTDGCHFAKWRCVLKIGDHTPSALAILENANVLARYASICQASRI 183
T QGLD L++RC +YK DG F KWR VL+I D PS+LAI ENAN LARYASICQ + +
Sbjct: 123 TIQGLDGLSERCAQYKKDGVDFGKWRAVLRIADQCPSSLAIQENANALARYASICQQNGL 182
Query: 184 VPIVEPEVLPDGAHDLARCQKVTEAVLASVVKALHDHNVYLEGILLKPNMVTPGASCSEK 243
VPIVEPEV+PDG HDL CQ VTE VLA+V KAL+DH+VYLEG LLKPNMVT G +C++K
Sbjct: 183 VPIVEPEVIPDGDHDLEHCQYVTEKVLAAVYKALNDHHVYLEGTLLKPNMVTAGHACTKK 242
Query: 244 YAPSDIALATVTALQRTLPVAVPGVVFLSGGQTEEEASVHLNAINQTQALTPWALSFSYG 303
Y P +A+ATVTAL RT+P AVPG+ FLSGG +EE+A+++LNAIN PW LSFSYG
Sbjct: 243 YTPEQVAMATVTALHRTVPAAVPGICFLSGGMSEEDATLNLNAINLCPLPKPWKLSFSYG 302
Query: 304 RALQASVLRAWGGRPGNVLAGQNELLARARANGCASLGHYKAGAVKGVAGERDLFV 359
RALQAS L AWGG+ N A Q + RA AN A+ G Y G A + LF
Sbjct: 303 RALQASALAAWGGKAANKEATQEAFMKRAMANCQAAKGQYVHTGSSGAASTQSLFT 358
>d2qapa1 c.1.10.1 (A:1-357) Fructose-1,6-bisphosphate aldolase
{Trypanosome (Leishmania mexicana) [TaxId: 5665]}
Length = 357
Score = 405 bits (1042), Expect = e-142
Identities = 170/344 (49%), Positives = 214/344 (62%), Gaps = 2/344 (0%)
Query: 3 THFNYLSPELQAELKLIAETLVEPGKGILAADESVSTMGKRLADIGVENTEENRRLYRQL 62
+N L ++EL + L PGKG+LAADES+ + KR IG+ NTEE+RR YR L
Sbjct: 12 PAYNRLKTPYESELIATVKKLTTPGKGLLAADESIGSCTKRFQPIGLSNTEEHRRQYRAL 71
Query: 63 LFTTDHELGESISGVILFHDTLYEKADDGTPFVELLRQRGIIPGIKVDKGVVPL-AGTDG 121
+ + + ISGVIL +T+ +KA +G F E L RG++PGIK D G+ PL G +G
Sbjct: 72 MLEAE-GFEQYISGVILHDETVGQKASNGQTFPEYLTARGVVPGIKTDMGLCPLLEGAEG 130
Query: 122 ETTTQGLDDLAKRCDKYKTDGCHFAKWRCVLKIGDHTPSALAILENANVLARYASICQAS 181
E T+GLD KR Y GC F KWR V KI + T S A+ NA LARYA + Q S
Sbjct: 131 EQMTEGLDGYVKRASAYYKKGCRFCKWRNVYKIQNGTVSESAVRFNAETLARYAILSQMS 190
Query: 182 RIVPIVEPEVLPDGAHDLARCQKVTEAVLASVVKALHDHNVYLEGILLKPNMVTPGASCS 241
+VPIVEPEV+ DG HD+ CQ+V+E V VV AL H V EG LLKPNMV PGA
Sbjct: 191 GLVPIVEPEVMIDGKHDIDTCQRVSEHVWREVVAALQRHGVIWEGCLLKPNMVVPGAESG 250
Query: 242 EKYAPSDIALATVTALQRTLPVAVPGVVFLSGGQTEEEASVHLNAINQTQALTPWALSFS 301
+ AP +A TV L RT+P +PGV+FLSGG +E +AS +LNAIN + P+ LSFS
Sbjct: 251 KTAAPEQVAHYTVMTLARTMPAMLPGVMFLSGGLSEVQASEYLNAINNSPLPRPYFLSFS 310
Query: 302 YGRALQASVLRAWGGRPGNVLAGQNELLARARANGCASLGHYKA 345
Y RALQ+S L+AWGG+ + AG+ L RAR N A LG YK
Sbjct: 311 YARALQSSALKAWGGKESGLAAGRRAFLHRARMNSMAQLGKYKR 354
>d1a5ca_ c.1.10.1 (A:) Fructose-1,6-bisphosphate aldolase
{Plasmodium falciparum [TaxId: 5833]}
Length = 342
Score = 404 bits (1039), Expect = e-142
Identities = 191/342 (55%), Positives = 230/342 (67%), Gaps = 4/342 (1%)
Query: 8 LSPELQAELKLIAETLVEPGKGILAADESVSTMGKRLADIGVENTEENRRLYRQLLFTTD 67
L ++ EL A+ LV+ GKGILAADES T+ KR +I +ENT ENR YR LLF T
Sbjct: 1 LPADVAEELATTAQKLVQAGKGILAADESTQTIKKRFDNIKLENTIENRASYRDLLFGTK 60
Query: 68 HELGESISGVILFHDTLYEKADDGTPFVELLRQRGIIPGIKVDKGVVPLAGTDGETTTQG 127
LG+ ISG ILF +TL++K + G P V LL IIPGIKVDKG+V + TD E +TQG
Sbjct: 61 -GLGKFISGAILFEETLFQKNEAGVPMVNLLHNENIIPGIKVDKGLVNIPCTDEEKSTQG 119
Query: 128 LDDLAKRCDKYKTDGCHFAKWRCVLKIG--DHTPSALAILENANVLARYASICQASRIVP 185
LD LA+RC +Y G FAKWR VL I P+ L+I E A LARYASICQ +R+VP
Sbjct: 120 LDGLAERCKEYYKAGARFAKWRTVLVIDTAKGKPTDLSIHETAWGLARYASICQQNRLVP 179
Query: 186 IVEPEVLPDGAHDLARCQKVTEAVLASVVKALHDHNVYLEGILLKPNMVTPGASCSEKYA 245
IVEPE+L DG H + C VT+ VL+ V KAL ++ V LEG LLKPNMVT G C+ K
Sbjct: 180 IVEPEILADGPHSIEVCAVVTQKVLSCVFKALQENGVLLEGALLKPNMVTAGYECTAKTT 239
Query: 246 PSDIALATVTALQRTLPVAVPGVVFLSGGQTEEEASVHLNAINQTQALTPWALSFSYGRA 305
D+ TV L+RT+P A+PGVVFLSGGQ+EEEASV+LN+IN PWAL+FSYGRA
Sbjct: 240 TQDVGFLTVRTLRRTVPPALPGVVFLSGGQSEEEASVNLNSINA-LGPHPWALTFSYGRA 298
Query: 306 LQASVLRAWGGRPGNVLAGQNELLARARANGCASLGHYKAGA 347
LQASVL W G+ NV + LL RA AN A+ G YK GA
Sbjct: 299 LQASVLNTWQGKKENVAKAREVLLQRAEANSLATYGKYKGGA 340
>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 491
Score = 27.4 bits (60), Expect = 3.6
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 11/55 (20%)
Query: 54 ENRRLYRQLLFTTDHELGESISGVILFHDTLYEKADDGTPFVELLRQRGIIPGIK 108
E R L + L F ++E +A +GT F E L+ + + P ++
Sbjct: 286 EKRMLMKFLTFCVEYEEHPDEY-----------RAYEGTTFSEYLKTQKLTPNLQ 329
>d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella
typhimurium [TaxId: 90371]}
Length = 291
Score = 27.0 bits (59), Expect = 4.1
Identities = 36/215 (16%), Positives = 65/215 (30%), Gaps = 32/215 (14%)
Query: 101 RGIIPGIKVDK-GVVPLAGTDGETTTQGLDDLAKRCDKYKTDGCHFAKWRCVLKIGDHTP 159
+ V +P G + A+ K DG K + + +
Sbjct: 80 VAKSCAMIVAADDFIPGNGIPVDNVVLDKKINAQAV---KRDGAKALKLLVLWRSDEDAQ 136
Query: 160 SALAILENANVLARYASICQASRIVPIVEPEVLPDGAHDLARCQKVTEAVLASVVKALHD 219
L +++ + +C ++ ++ I+EP V P D + E + K L D
Sbjct: 137 QRLNMVK------EFNELCHSNGLLSIIEPVVRPPRCGD----KFDREQAIIDAAKELGD 186
Query: 220 HNVYLEGILLKPNMVTPGASCSEKYAPSDIALATVTALQRTLPVAVPGVVFLSGGQTEEE 279
L + + L L + + V LS G E+
Sbjct: 187 SGADLYKVEMPLYGK----------GARSDLLTASQRLNGHINM---PWVILSSGVDEKL 233
Query: 280 ASVHLNAINQTQALTPWALSFSYGRALQASVLRAW 314
+ A+ A F GRA+ +SV+
Sbjct: 234 FPRAVRV-----AMEAGASGFLAGRAVWSSVIGLP 263
>d1uoza_ c.6.1.1 (A:) Putative cellulase Rv0062 (Cel6, CelA1)
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 301
Score = 25.9 bits (57), Expect = 7.0
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Query: 173 RYASICQASRIVPIVEPEVLPDGAHDLARCQKVTEAVLASVVKALHDH-NVYL 224
AS +S IVEP+ L ++ ++ V L +
Sbjct: 110 AVASGLGSSPATIIVEPDALAMADCLSPDQRQERFDLVRYAVDTLTRDPAAAV 162
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.395
Gapped
Lambda K H
0.267 0.0552 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,316,557
Number of extensions: 60649
Number of successful extensions: 159
Number of sequences better than 10.0: 1
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 10
Length of query: 364
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 278
Effective length of database: 1,226,816
Effective search space: 341054848
Effective search space used: 341054848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.6 bits)