RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1960
(428 letters)
>gnl|CDD|143441 cd07123, ALDH_F4-17_P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, ALDH families 4 and 17.
Delta(1)-pyrroline-5-carboxylate dehydrogenase
(EC=1.5.1.12 ), families 4 and 17: a proline catabolic
enzyme of the aldehyde dehydrogenase (ALDH) protein
superfamily. Delta(1)-pyrroline-5-carboxylate
dehydrogenase (P5CDH), also known as ALDH4A1 in humans,
is a mitochondrial homodimer involved in proline
degradation and catalyzes the NAD + -dependent
conversion of P5C to glutamate. This is a necessary step
in the pathway interconnecting the urea and
tricarboxylic acid cycles. The preferred substrate is
glutamic gamma-semialdehyde, other substrates include
succinic, glutaric and adipic semialdehydes. Also
included in this CD is the Aldh17 Drosophila
melanogaster (Q9VUC0) P5CDH and similar sequences.
Length = 522
Score = 346 bits (889), Expect = e-115
Identities = 113/162 (69%), Positives = 137/162 (84%)
Query: 196 GLDGFVAAVSPFNFTAIGGNLAYTPALMGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGV 255
L+GFV AVSPFNFTAIGGNLA PALMG+ VLWKPSDTA+LSNY +YKI+ EAG+PPGV
Sbjct: 169 PLEGFVYAVSPFNFTAIGGNLAGAPALMGNVVLWKPSDTAVLSNYLVYKILEEAGLPPGV 228
Query: 256 VNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGGK 315
+NFVP DGPV GDT+ ASP+LAG++FTGS PTF LW Q+G+N++ Y+ +PR++GE GGK
Sbjct: 229 INFVPGDGPVVGDTVLASPHLAGLHFTGSTPTFKSLWKQIGENLDRYRTYPRIVGETGGK 288
Query: 316 NFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESL 357
NFH +H SA+V+S+V T+R AFEY GQKCSA SR YVPESL
Sbjct: 289 NFHLVHPSADVDSLVTATVRGAFEYQGQKCSAASRAYVPESL 330
Score = 80.3 bits (199), Expect = 3e-16
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 10/76 (13%)
Query: 35 PEWTYLPGSKEREAITAALKRVGSTVEEVPIVIGSKEYKTEHVQYQPMVSLHVQYQPMPH 94
P +Y PGS ER + AL + S E+P+VIG KE +T + Q MPH
Sbjct: 5 PVLSYAPGSPERAKLQEALAELKSLTVEIPLVIGGKEVRTG----------NTGKQVMPH 54
Query: 95 NHKKKIAKFYYATPVL 110
+H +A ++YA L
Sbjct: 55 DHAHVLATYHYADAAL 70
Score = 76.9 bits (190), Expect = 4e-15
Identities = 24/33 (72%), Positives = 27/33 (81%)
Query: 146 LDDLKYAAGNYYINDKSTGSVVGQQPFGGGRMS 178
D L+ AAGN+YINDK TG+VVGQQPFGG R S
Sbjct: 463 TDALRNAAGNFYINDKPTGAVVGQQPFGGARAS 495
>gnl|CDD|233324 TIGR01236, D1pyr5carbox1, delta-1-pyrroline-5-carboxylate
dehydrogenase, group 1. This model represents one of
two related branches of delta-1-pyrroline-5-carboxylate
dehydrogenase. The two branches are not as closely
related to each other as some aldehyde dehydrogenases
are to this branch, and separate models are built for
this reason. The enzyme is the second of two in the
degradation of proline to glutamate [Energy metabolism,
Amino acids and amines].
Length = 532
Score = 331 bits (851), Expect = e-109
Identities = 156/342 (45%), Positives = 204/342 (59%), Gaps = 43/342 (12%)
Query: 39 YLPGSKEREAITAALKRVGSTVEEVPIVIGSKEYKTEHVQYQPMVSLHVQYQPMPHNHKK 98
+ PGS ER+ + ALK + +EE+P+VIG +E T + YQ PHNH+
Sbjct: 8 FRPGSPERDLLRKALKELKGRMEEIPLVIGGEEVWTSGER---------IYQVSPHNHQA 58
Query: 99 KIAKFYYATPVL-----KSALDIVS--SLCP-YEKNSVGL----LINTEVLHDDL----- 141
+AK AT L ++ALD SL P Y++ ++ L L++ + L
Sbjct: 59 VLAKATNATEELANKAVEAALDAKKEWSLLPFYDRAAIFLKAADLLSGPYRAEILAATML 118
Query: 142 ------YFRCLDDLKYAAGNYYINDKSTGSVVGQQPFGGGRMSALTFYLEVLASNLGRGE 195
Y +D + + N K + QQP T Y
Sbjct: 119 GQSKTVYQAEIDAVAELIDFFRFNAKYARELYEQQPISAPGEWNRTEY-----------R 167
Query: 196 GLDGFVAAVSPFNFTAIGGNLAYTPALMGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGV 255
L+GFV A+SPFNFTAI GNLA PALMG++V+WKPSDTA+LSNY + +I+ EAG+PPGV
Sbjct: 168 PLEGFVYAISPFNFTAIAGNLAGAPALMGNTVIWKPSDTAMLSNYLVMRILEEAGLPPGV 227
Query: 256 VNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGGK 315
+NFVP DGP+ DT+ A P LAGI+FTGS PTF LW QV +N++ Y NFPR++GE GGK
Sbjct: 228 INFVPGDGPLVSDTVLADPDLAGIHFTGSTPTFKHLWKQVAQNLDRYHNFPRIVGETGGK 287
Query: 316 NFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESL 357
+FH +H SA+VE VV+GTIR AFEY GQKCSACSR+YVP SL
Sbjct: 288 DFHVVHPSADVEHVVSGTIRGAFEYQGQKCSACSRLYVPHSL 329
Score = 70.2 bits (172), Expect = 5e-13
Identities = 23/33 (69%), Positives = 27/33 (81%)
Query: 146 LDDLKYAAGNYYINDKSTGSVVGQQPFGGGRMS 178
L++AAGN+YINDK TG+VVGQQPFGG R S
Sbjct: 463 DKVLRFAAGNFYINDKPTGAVVGQQPFGGARAS 495
>gnl|CDD|143402 cd07083, ALDH_P5CDH, ALDH subfamily NAD+-dependent
delta(1)-pyrroline-5-carboxylate dehydrogenase-like.
ALDH subfamily of the NAD+-dependent,
delta(1)-pyrroline-5-carboxylate dehydrogenases (P5CDH,
EC=1.5.1.12). The proline catabolic enzymes, proline
dehydrogenase and P5CDH catalyze the two-step oxidation
of proline to glutamate. P5CDH catalyzes the oxidation
of glutamate semialdehyde, utilizing NAD+ as the
electron acceptor. In some bacteria, the two enzymes are
fused into the bifunctional flavoenzyme, proline
utilization A (PutA). These enzymes play important roles
in cellular redox control, superoxide generation, and
apoptosis. In certain prokaryotes such as Escherichia
coli, PutA is also a transcriptional repressor of the
proline utilization genes. Monofunctional enzyme
sequences such as those seen in the Bacillus RocA P5CDH
are also present in this subfamily as well as the human
ALDH4A1 P5CDH and the Drosophila Aldh17 P5CDH.
Length = 500
Score = 242 bits (618), Expect = 6e-75
Identities = 90/338 (26%), Positives = 141/338 (41%), Gaps = 47/338 (13%)
Query: 46 REAITAALKRVGST-VEEVPIVIGSKEYKTEHVQYQPMVSLHVQYQPMPHNHKKKIAKFY 104
R A+ AL+RV P+VIG + T+ VS P + +
Sbjct: 1 RRAMREALRRVKEEFGRAYPLVIGGEWVDTKERMVS--VS--------PFAPSEVVGTTA 50
Query: 105 YA-----TPVLKSALDIVSS--LCPYEKNSVGLLINTEVLHD---DLYFRC--------- 145
A L++A + P E + LL ++L +L
Sbjct: 51 KADKAEAEAALEAAWAAFKTWKDWPQEDRARLLLKAADLLRRRRRELIATLTYEVGKNWV 110
Query: 146 --LDDLKYAAGNYYINDKSTGSVVGQQPFGGGRMSAL--TFYLEVLASNLGRGEGLDGFV 201
+DD+ A ++ + +FY GL G
Sbjct: 111 EAIDDVAEAIDFIRYYARAALRLRYPAVEVVPYPGEDNESFY-----------VGL-GAG 158
Query: 202 AAVSPFNFT-AIGGNLAYTPALMGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVNFVP 260
+SP+NF AI + P +G++V+ KP++ A++ Y +++I EAG PPGVV F+P
Sbjct: 159 VVISPWNFPVAIFTGMIVAPVAVGNTVIAKPAEDAVVVGYKVFEIFHEAGFPPGVVQFLP 218
Query: 261 ADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGGKNFHFI 320
G G +T + GINFTGS+ T +++ + F RL E GGKN +
Sbjct: 219 GVGEEVGAYLTEHERIRGINFTGSLETGKKIYEAAARLAPGQTWFKRLYVETGGKNAIIV 278
Query: 321 HASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
+A+ E VV G + SAF + GQKCSA SR+ + + +
Sbjct: 279 DETADFELVVEGVVVSAFGFQGQKCSAASRLILTQGAY 316
Score = 55.3 bits (133), Expect = 3e-08
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 150 KYAAGNYYINDKSTGSVVGQQPFGGGRMS 178
++ GN YIN K TG++VG QPFGG ++S
Sbjct: 447 EFHVGNLYINRKITGALVGVQPFGGFKLS 475
>gnl|CDD|215767 pfam00171, Aldedh, Aldehyde dehydrogenase family. This family of
dehydrogenases act on aldehyde substrates. Members use
NADP as a cofactor. The family includes the following
members: The prototypical members are the aldehyde
dehydrogenases EC:1.2.1.3. Succinate-semialdehyde
dehydrogenase EC:1.2.1.16. Lactaldehyde dehydrogenase
EC:1.2.1.22. Benzaldehyde dehydrogenase EC:1.2.1.28.
Methylmalonate-semialdehyde dehydrogenase EC:1.2.1.27.
Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9.
Delta-1-pyrroline-5-carboxylate dehydrogenase EC:
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10.
Glutamate-5-semialdehyde dehydrogenase EC:1.2.1.41. This
family also includes omega crystallin, an eye lens
protein from squid and octopus that has little aldehyde
dehydrogenase activity.
Length = 459
Score = 171 bits (437), Expect = 8e-49
Identities = 56/163 (34%), Positives = 86/163 (52%), Gaps = 11/163 (6%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 257
G V A++P+NF + PAL G++V+ KPS+ L+ + ++ EAG+PPGV+N
Sbjct: 128 GVVGAITPWNFPLLLAAWKIAPALAAGNTVVLKPSELTPLTALLLAELFEEAGLPPGVLN 187
Query: 258 FVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNI--NVYKNFPRLIGECGGK 315
V G GD + P + ++FTGS G+ I KN R+ E GGK
Sbjct: 188 VVTGSGSEVGDALVEHPDVDKVSFTGSTEV--------GRRIAKAAAKNLKRVTLELGGK 239
Query: 316 NFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
N + A++++ V G + AF GQ C+A SR+ V ES++
Sbjct: 240 NPLIVFDDADLDAAVEGAVFGAFGNAGQVCTAGSRLLVHESIY 282
Score = 36.4 bits (85), Expect = 0.028
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 12/53 (22%)
Query: 143 FRCLDDLKYAAGNYYINDKSTGSVVGQQPFGGGRMS---------ALTFYLEV 186
R L+ AG +IND +TG PFGG + S L Y E
Sbjct: 407 LRVARRLE--AGMVWINDYTTGDPEA-LPFGGFKQSGFGREGGKEGLEEYTET 456
>gnl|CDD|143395 cd06534, ALDH-SF, NAD(P)+-dependent aldehyde dehydrogenase
superfamily. The aldehyde dehydrogenase superfamily
(ALDH-SF) of NAD(P)+-dependent enzymes, in general,
oxidize a wide range of endogenous and exogenous
aliphatic and aromatic aldehydes to their corresponding
carboxylic acids and play an important role in
detoxification. Besides aldehyde detoxification, many
ALDH isozymes possess multiple additional catalytic and
non-catalytic functions such as participating in
metabolic pathways, or as binding proteins, or
osmoregulants, to mention a few. The enzyme has three
domains, a NAD(P)+ cofactor-binding domain, a catalytic
domain, and a bridging domain; and the active enzyme is
generally either homodimeric or homotetrameric. The
catalytic mechanism is proposed to involve cofactor
binding, resulting in a conformational change and
activation of an invariant catalytic cysteine
nucleophile. The cysteine and aldehyde substrate form an
oxyanion thiohemiacetal intermediate resulting in
hydride transfer to the cofactor and formation of a
thioacylenzyme intermediate. Hydrolysis of the
thioacylenzyme and release of the carboxylic acid
product occurs, and in most cases, the reduced cofactor
dissociates from the enzyme. The evolutionary
phylogenetic tree of ALDHs appears to have an initial
bifurcation between what has been characterized as the
classical aldehyde dehydrogenases, the ALDH family
(ALDH) and extended family members or aldehyde
dehydrogenase-like (ALDH-L) proteins. The ALDH proteins
are represented by enzymes which share a number of
highly conserved residues necessary for catalysis and
cofactor binding and they include such proteins as
retinal dehydrogenase, 10-formyltetrahydrofolate
dehydrogenase, non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase,
delta(1)-pyrroline-5-carboxylate dehydrogenases,
alpha-ketoglutaric semialdehyde dehydrogenase,
alpha-aminoadipic semialdehyde dehydrogenase, coniferyl
aldehyde dehydrogenase and succinate-semialdehyde
dehydrogenase. Included in this larger group are all
human, Arabidopsis, Tortula, fungal, protozoan, and
Drosophila ALDHs identified in families ALDH1 through
ALDH22 with the exception of families ALDH18, ALDH19,
and ALDH20 which are present in the ALDH-like group. The
ALDH-like group is represented by such proteins as
gamma-glutamyl phosphate reductase, LuxC-like acyl-CoA
reductase, and coenzyme A acylating aldehyde
dehydrogenase. All of these proteins have a conserved
cysteine that aligns with the catalytic cysteine of the
ALDH group.
Length = 367
Score = 160 bits (407), Expect = 3e-45
Identities = 67/218 (30%), Positives = 101/218 (46%), Gaps = 29/218 (13%)
Query: 144 RCLDDLKYAAGNYYINDKSTGSVVGQQPFGGGRMSALTFYLEVLASNLGRGEGLDGFVAA 203
R +D +YAAG DK G + P A E L G V
Sbjct: 57 RAIDTFRYAAGLA---DKLGGP---ELPSPDPGGEAYVRR-----------EPL-GVVGV 98
Query: 204 VSPFNFTA--IGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVNFVP 260
++P+NF LA PAL G++V+ KPS+ L+ + +++ EAG+PPGVVN VP
Sbjct: 99 ITPWNFPLLLAAWKLA--PALAAGNTVVLKPSELTPLTALALAELLQEAGLPPGVVNVVP 156
Query: 261 ADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGGKNFHFI 320
G G + + P + I+FTGS + +N + E GGK+ +
Sbjct: 157 GGGDEVGAALLSHPRVDKISFTGSTAVGKAIMKAAA------ENLKPVTLELGGKSPVIV 210
Query: 321 HASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
A++++ V G + AF GQ C+A SR+ V ES++
Sbjct: 211 DEDADLDAAVEGAVFGAFFNAGQICTAASRLLVHESIY 248
Score = 34.5 bits (80), Expect = 0.10
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 12/48 (25%)
Query: 153 AGNYYINDKSTGSVVGQQPFGGGRMSALTFYLEVLASNLGRGEGLDGF 200
AG YIND S G V + PFGG + S +GR G G
Sbjct: 321 AGTVYINDSSIG-VGPEAPFGGVKNSG-----------IGREGGPYGL 356
>gnl|CDD|143397 cd07078, ALDH, NAD(P)+ dependent aldehyde dehydrogenase family.
The aldehyde dehydrogenase family (ALDH) of NAD(P)+
dependent enzymes, in general, oxidize a wide range of
endogenous and exogenous aliphatic and aromatic
aldehydes to their corresponding carboxylic acids and
play an important role in detoxification. Besides
aldehyde detoxification, many ALDH isozymes possess
multiple additional catalytic and non-catalytic
functions such as participating in metabolic pathways,
or as binding proteins, or as osmoregulants, to mention
a few. The enzyme has three domains, a NAD(P)+
cofactor-binding domain, a catalytic domain, and a
bridging domain; and the active enzyme is generally
either homodimeric or homotetrameric. The catalytic
mechanism is proposed to involve cofactor binding,
resulting in a conformational change and activation of
an invariant catalytic cysteine nucleophile. The
cysteine and aldehyde substrate form an oxyanion
thiohemiacetal intermediate resulting in hydride
transfer to the cofactor and formation of a
thioacylenzyme intermediate. Hydrolysis of the
thioacylenzyme and release of the carboxylic acid
product occurs, and in most cases, the reduced cofactor
dissociates from the enzyme. The evolutionary
phylogenetic tree of ALDHs appears to have an initial
bifurcation between what has been characterized as the
classical aldehyde dehydrogenases, the ALDH family
(ALDH) and extended family members or aldehyde
dehydrogenase-like (ALDH-like) proteins. The ALDH
proteins are represented by enzymes which share a number
of highly conserved residues necessary for catalysis and
cofactor binding and they include such proteins as
retinal dehydrogenase, 10-formyltetrahydrofolate
dehydrogenase, non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase,
delta(1)-pyrroline-5-carboxylate dehydrogenases,
alpha-ketoglutaric semialdehyde dehydrogenase,
alpha-aminoadipic semialdehyde dehydrogenase, coniferyl
aldehyde dehydrogenase and succinate-semialdehyde
dehydrogenase. Included in this larger group are all
human, Arabidopsis, Tortula, fungal, protozoan, and
Drosophila ALDHs identified in families ALDH1 through
ALDH22 with the exception of families ALDH18, ALDH19,
and ALDH20 which are present in the ALDH-like group.
Length = 432
Score = 160 bits (408), Expect = 7e-45
Identities = 55/163 (33%), Positives = 88/163 (53%), Gaps = 11/163 (6%)
Query: 199 GFVAAVSPFNFTA--IGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGV 255
G V A++P+NF LA PAL G++V+ KPS+ L+ + +++ EAG+PPGV
Sbjct: 98 GVVGAITPWNFPLLLAAWKLA--PALAAGNTVVLKPSELTPLTALLLAELLAEAGLPPGV 155
Query: 256 VNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGGK 315
+N V DG G + + P + I+FTGS + +N+ R+ E GGK
Sbjct: 156 LNVVTGDGDEVGAALASHPRVDKISFTGSTAVGKAIMRAAAENL------KRVTLELGGK 209
Query: 316 NFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
+ + A++++ V G + AF GQ C+A SR+ V ES++
Sbjct: 210 SPLIVFDDADLDAAVKGAVFGAFGNAGQVCTAASRLLVHESIY 252
Score = 35.3 bits (82), Expect = 0.057
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 12/48 (25%)
Query: 153 AGNYYINDKSTGSVVGQQPFGGGRMSALTFYLEVLASNLGRGEGLDGF 200
AG +IND S G PFGG + S +GR G G
Sbjct: 386 AGTVWINDYSVG-AEPSAPFGGVKQSG-----------IGREGGPYGL 421
>gnl|CDD|143442 cd07124, ALDH_PutA-P5CDH-RocA, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, RocA. Delta(1)-pyrroline-5-carboxylate
dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic
enzyme of the aldehyde dehydrogenase (ALDH) protein
superfamily. The proline catabolic enzymes, proline
dehydrogenase and Delta(1)-pyrroline-5-carboxylate
dehydrogenase (P5CDH), catalyze the two-step oxidation
of proline to glutamate; P5CDH catalyzes the oxidation
of glutamate semialdehyde, utilizing NAD+ as the
electron acceptor. In some bacteria, the two enzymes are
fused into the bifunctional flavoenzyme, proline
utilization A (PutA). In this CD, monofunctional enzyme
sequences such as seen in the Bacillus subtilis RocA
P5CDH are also present. These enzymes play important
roles in cellular redox control, superoxide generation,
and apoptosis.
Length = 512
Score = 154 bits (392), Expect = 6e-42
Identities = 61/161 (37%), Positives = 91/161 (56%), Gaps = 1/161 (0%)
Query: 199 GFVAAVSPFNF-TAIGGNLAYTPALMGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 257
G A +SP+NF AI + + G++V+ KP++ + + +I+ EAG+PPGVVN
Sbjct: 168 GVGAVISPWNFPLAILAGMTTAALVTGNTVVLKPAEDTPVIAAKLVEILEEAGLPPGVVN 227
Query: 258 FVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGGKNF 317
F+P G GD + P + I FTGS R++ + K K R+I E GGKN
Sbjct: 228 FLPGPGEEVGDYLVEHPDVRFIAFTGSREVGLRIYERAAKVQPGQKWLKRVIAEMGGKNA 287
Query: 318 HFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
+ A+++ G +RSAF + GQKCSACSR+ V ES++
Sbjct: 288 IIVDEDADLDEAAEGIVRSAFGFQGQKCSACSRVIVHESVY 328
Score = 47.6 bits (114), Expect = 8e-06
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 153 AGNYYINDKSTGSVVGQQPFGGGRMS 178
GN Y N K TG++VG+QPFGG +MS
Sbjct: 462 VGNLYANRKITGALVGRQPFGGFKMS 487
Score = 31.4 bits (72), Expect = 1.1
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 46 REAITAALKRVGSTV-EEVPIVIGSKEYKTE 75
R A AAL RV + E P+VIG KE +TE
Sbjct: 15 RAAFRAALARVREELGREYPLVIGGKEVRTE 45
>gnl|CDD|223944 COG1012, PutA, NAD-dependent aldehyde dehydrogenases [Energy
production and conversion].
Length = 472
Score = 148 bits (376), Expect = 5e-40
Identities = 50/159 (31%), Positives = 79/159 (49%), Gaps = 7/159 (4%)
Query: 199 GFVAAVSPFNF-TAIGGNLAYTPALMGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 257
G V A++P+NF A+ G++V+ KPS+ LS + ++ EAG+P GV+N
Sbjct: 135 GVVGAITPWNFPLALAAWKLAPALAAGNTVVLKPSEQTPLSALALAELAAEAGLPAGVLN 194
Query: 258 FVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGGKNF 317
V G GD + A P + I+FTGS + N + E GGK+
Sbjct: 195 VVTGGGAEVGDALVAHPDVDAISFTGSTAVGRAIA------AAAAANLKPVTLELGGKSP 248
Query: 318 HFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPES 356
+ A++++ V+ + AF GQ+C+A SR+ V ES
Sbjct: 249 AIVLEDADLDAAVDAAVFGAFFNAGQRCTAASRLIVHES 287
Score = 35.0 bits (81), Expect = 0.066
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 11/54 (20%)
Query: 142 YFRCLDDLKYAAGNYYINDKSTGSVVGQQPFGGGRMS---------ALTFYLEV 186
FR L+ AG IND + G+ + PFGG + S L + EV
Sbjct: 411 AFRVARRLE--AGMVGINDYTGGADIAYLPFGGVKQSGLGREGGKYGLEEFTEV 462
>gnl|CDD|179543 PRK03137, PRK03137, 1-pyrroline-5-carboxylate dehydrogenase;
Provisional.
Length = 514
Score = 123 bits (311), Expect = 8e-31
Identities = 56/169 (33%), Positives = 80/169 (47%), Gaps = 17/169 (10%)
Query: 199 GFVAAVSPFNF-TAIGGNLAYTPALMGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 257
G +SP+NF AI + + G++VL KP+ + +++ EAG+P GVVN
Sbjct: 173 GVGVVISPWNFPFAIMAGMTLAAIVAGNTVLLKPASDTPVIAAKFVEVLEEAGLPAGVVN 232
Query: 258 FVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVY--------KNFPRLI 309
FVP G GD + P I FTGS +VG I R+I
Sbjct: 233 FVPGSGSEVGDYLVDHPKTRFITFTGS--------REVGLRIYERAAKVQPGQIWLKRVI 284
Query: 310 GECGGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
E GGK+ + A+++ + SAF + GQKCSACSR V E ++
Sbjct: 285 AEMGGKDAIVVDEDADLDLAAESIVASAFGFSGQKCSACSRAIVHEDVY 333
Score = 44.9 bits (107), Expect = 6e-05
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 153 AGNYYINDKSTGSVVGQQPFGGGRMS 178
GN Y N TG++VG PFGG MS
Sbjct: 464 VGNLYFNRGCTGAIVGYHPFGGFNMS 489
>gnl|CDD|143415 cd07097, ALDH_KGSADH-YcbD, Bacillus subtilis NADP+-dependent
alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like.
Kinetic studies of the Bacillus subtilis ALDH-like ycbD
protein, which is involved in d-glucarate/d-galactarate
utilization, reveal that it is a NADP+-dependent,
alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH).
KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent
conversion of KGSA to alpha-ketoglutarate.
Interestingly, the NADP+-dependent, tetrameric,
2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an
enzyme involved in the catabolic pathway for D-arabinose
in Sulfolobus solfataricus, also clusters in this group.
This CD shows a distant phylogenetic relationship to the
Azospirillum brasilense KGSADH-II (-III) group.
Length = 473
Score = 121 bits (307), Expect = 2e-30
Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 15/164 (9%)
Query: 199 GFVAAVSPFNF-TAIGG-NLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGV 255
G V ++P+NF AI +A PAL G++V++KP++ S + + +I+ EAG+P GV
Sbjct: 137 GVVGLITPWNFPIAIPAWKIA--PALAYGNTVVFKPAELTPASAWALVEILEEAGLPAGV 194
Query: 256 VNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNIN--VYKNFPRLIGECG 313
N V G G + P + ++FTGS VG+ I R+ E G
Sbjct: 195 FNLVMGSGSEVGQALVEHPDVDAVSFTGSTA--------VGRRIAAAAAARGARVQLEMG 246
Query: 314 GKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESL 357
GKN + A+++ V ++ AF GQ+C+A SR+ V E +
Sbjct: 247 GKNPLVVLDDADLDLAVECAVQGAFFSTGQRCTASSRLIVTEGI 290
>gnl|CDD|143443 cd07125, ALDH_PutA-P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, PutA. The proline catabolic enzymes of
the aldehyde dehydrogenase (ALDH) protein superfamily,
proline dehydrogenase and
Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
(EC=1.5.1.12 )), catalyze the two-step oxidation of
proline to glutamate; P5CDH catalyzes the oxidation of
glutamate semialdehyde, utilizing NAD+ as the electron
acceptor. In some bacteria, the two enzymes are fused
into the bifunctional flavoenzyme, proline utilization A
(PutA) These enzymes play important roles in cellular
redox control, superoxide generation, and apoptosis. In
certain prokaryotes such as Escherichia coli, PutA is
also a transcriptional repressor of the proline
utilization genes.
Length = 518
Score = 119 bits (302), Expect = 1e-29
Identities = 56/166 (33%), Positives = 80/166 (48%), Gaps = 16/166 (9%)
Query: 199 GFVAAVSPFNF---TAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPG 254
G +SP+NF G A AL G++V+ KP++ L +++ EAGVP
Sbjct: 169 GVFVCISPWNFPLAIFTGQIAA---ALAAGNTVIAKPAEQTPLIAARAVELLHEAGVPRD 225
Query: 255 VVNFVPADGPVFGDTITASPYLAGINFTGSVPT---FNRLWLQVGKNINVYKNFPRLIGE 311
V+ VP DG G+ + A P + G+ FTGS T NR L LI E
Sbjct: 226 VLQLVPGDGEEIGEALVAHPRIDGVIFTGSTETAKLINR-AL-----AERDGPILPLIAE 279
Query: 312 CGGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESL 357
GGKN + ++A E V ++SAF GQ+CSA +Y+ E +
Sbjct: 280 TGGKNAMIVDSTALPEQAVKDVVQSAFGSAGQRCSALRLLYLQEEI 325
Score = 44.1 bits (105), Expect = 9e-05
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 153 AGNYYINDKSTGSVVGQQPFGGGRMSA 179
AGN YIN TG++VG+QPFGG +S
Sbjct: 458 AGNLYINRNITGAIVGRQPFGGWGLSG 484
>gnl|CDD|200087 TIGR01237, D1pyr5carbox2, delta-1-pyrroline-5-carboxylate
dehydrogenase, group 2, putative. This enzyme is the
second of two in the degradation of proline to
glutamate. This model represents one of several related
branches of delta-1-pyrroline-5-carboxylate
dehydrogenase. Members of this branch may be associated
with proline dehydrogenase (the other enzyme of the
pathway from proline to glutamate) but have not been
demonstrated experimentally. The branches are not as
closely related to each other as some distinct aldehyde
dehydrogenases are to some; separate models were built
to let each model describe a set of equivalogs [Energy
metabolism, Amino acids and amines].
Length = 511
Score = 116 bits (291), Expect = 3e-28
Identities = 57/161 (35%), Positives = 83/161 (51%), Gaps = 1/161 (0%)
Query: 199 GFVAAVSPFNFT-AIGGNLAYTPALMGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 257
G +SP+NF AI + P + G+ V+ KP++ A + +I+ EAG+P GVV
Sbjct: 169 GVTVVISPWNFPFAIMVGMTVAPIVTGNCVVLKPAEAAPVIAAKFVEILEEAGLPKGVVQ 228
Query: 258 FVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGGKNF 317
FVP G GD + P + I FTGS R++ + K K+ R+I E GGK+
Sbjct: 229 FVPGSGSEVGDYLVDHPKTSLITFTGSREVGTRIFERAAKVQPGQKHLKRVIAEMGGKDT 288
Query: 318 HFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
+ A++E SAF + GQKCSA SR V E ++
Sbjct: 289 VIVDEDADIELAAQSAFTSAFGFAGQKCSAGSRAVVHEKVY 329
Score = 42.2 bits (99), Expect = 4e-04
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 150 KYAAGNYYINDKSTGSVVGQQPFGGGRMS 178
++ GN Y N TG++VG QPFGG +MS
Sbjct: 458 EFEVGNLYFNRNITGAIVGYQPFGGFKMS 486
>gnl|CDD|143432 cd07114, ALDH_DhaS, Uncharacterized Candidatus pelagibacter
aldehyde dehydrogenase, DhaS-like. Uncharacterized
aldehyde dehydrogenase from Candidatus pelagibacter
(DhaS) and other related sequences are present in this
CD.
Length = 457
Score = 111 bits (280), Expect = 8e-27
Identities = 71/221 (32%), Positives = 103/221 (46%), Gaps = 38/221 (17%)
Query: 149 LKYAAGNYYIN----DKSTGSVVGQQPFGGGRMSALTFYLEVLASNLGRGEGLDGFVAAV 204
++Y A Y DK G+V+ P G T R E L G VAA+
Sbjct: 82 VRYLAEWYRYYAGLADKIEGAVI---PVDKGDYLNFT-----------RREPL-GVVAAI 126
Query: 205 SPFN----FTAIGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVNFV 259
+P+N A LA PAL G++V+ KPS+ S + K+ EAG PPGVVN V
Sbjct: 127 TPWNSPLLLLA--KKLA--PALAAGNTVVLKPSEHTPASTLELAKLAEEAGFPPGVVNVV 182
Query: 260 PADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNI--NVYKNFPRLIGECGGKNF 317
GP G+ + P +A I FTG + G++I +N + E GGK+
Sbjct: 183 TGFGPETGEALVEHPLVAKIAFTGGT--------ETGRHIARAAAENLAPVTLELGGKSP 234
Query: 318 HFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
+ + A++++ VNG + F GQ C A SR+ V S++
Sbjct: 235 NIVFDDADLDAAVNGVVAGIFAAAGQTCVAGSRLLVQRSIY 275
>gnl|CDD|143433 cd07115, ALDH_HMSADH_HapE, Pseudomonas fluorescens 4-hydroxymuconic
semialdehyde dehydrogenase-like. 4-hydroxymuconic
semialdehyde dehydrogenase (HapE, EC=1.2.1.61) of
Pseudomonas fluorescens ACB involved in
4-hydroxyacetophenone degradation, and putative
hydroxycaproate semialdehyde dehydrogenase (ChnE) of
Brachymonas petroleovorans involved in cyclohexane
metabolism, and other similar sequences, are present in
this CD.
Length = 453
Score = 111 bits (279), Expect = 8e-27
Identities = 68/228 (29%), Positives = 101/228 (44%), Gaps = 31/228 (13%)
Query: 134 TEVLHDDLYFRCLDDLKYAAGNYYINDKSTGSVVGQQPFGGGRMSALTFYLEVLASNLGR 193
D+ R D +Y AG DK G V+ + L + +
Sbjct: 74 RAARRLDVP-RAADTFRYYAG---WADKIEGEVIPVRG------PFLNYTVR-------- 115
Query: 194 GEGLDGFVAAVSPFNFTAIGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVP 252
E + G V A+ P+NF + PAL G++V+ KP++ LS I ++M EAG P
Sbjct: 116 -EPV-GVVGAIVPWNFPLMFAAWKVAPALAAGNTVVLKPAELTPLSALRIAELMAEAGFP 173
Query: 253 PGVVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNI--NVYKNFPRLIG 310
GV+N V G V G + P + I FTGS VG+ I N R+
Sbjct: 174 AGVLNVVTGFGEVAGAALVEHPDVDKITFTGST--------AVGRKIMQGAAGNLKRVSL 225
Query: 311 ECGGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
E GGK+ + + A A++++ V F GQ C+A SR+ V ES++
Sbjct: 226 ELGGKSANIVFADADLDAAVRAAATGIFYNQGQMCTAGSRLLVHESIY 273
>gnl|CDD|143468 cd07150, ALDH_VaniDH_like, Pseudomonas putida vanillin
dehydrogenase-like. Vanillin dehydrogenase (Vdh,
VaniDH) involved in the metabolism of ferulic acid and
other related sequences are included in this CD. The
E. coli vanillin dehydrogenase (LigV) preferred NAD+ to
NADP+ and exhibited a broad substrate preference,
including vanillin, benzaldehyde, protocatechualdehyde,
m-anisaldehyde, and p-hydroxybenzaldehyde.
Length = 451
Score = 111 bits (279), Expect = 9e-27
Identities = 55/170 (32%), Positives = 82/170 (48%), Gaps = 12/170 (7%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 257
G VA ++PFN+ I AL G++V+ KPS+ + I +IM EAG+P GV N
Sbjct: 121 GVVAGITPFNYPLILATKKVAFALAAGNTVVLKPSEETPVIGLKIAEIMEEAGLPKGVFN 180
Query: 258 FVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVY--KNFPRLIGECGGK 315
V G GD + P + + FTGS VG+ I ++ ++ E GGK
Sbjct: 181 VVTGGGAEVGDELVDDPRVRMVTFTGSTA--------VGREIAEKAGRHLKKITLELGGK 232
Query: 316 NFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF-CFCSCF 364
N + A A+++ V AF + GQ C + SR+ V E ++ F F
Sbjct: 233 NPLIVLADADLDYAVRAAAFGAFMHQGQICMSASRIIVEEPVYDEFVKKF 282
>gnl|CDD|143463 cd07145, ALDH_LactADH_F420-Bios, Methanocaldococcus jannaschii
NAD+-dependent lactaldehyde dehydrogenase-like.
NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22)
involved the biosynthesis of coenzyme F(420) in
Methanocaldococcus jannaschii through the oxidation of
lactaldehyde to lactate and generation of NAPH, and
similar sequences are included in this CD.
Length = 456
Score = 111 bits (279), Expect = 9e-27
Identities = 57/168 (33%), Positives = 83/168 (49%), Gaps = 21/168 (12%)
Query: 199 GFVAAVSPFNFTA------IGGNLAYTPALMGSSVLWKPSDTALLSNYTIYKIMIEAGVP 252
G V A++PFNF A I +A +G+SV+ KPS L+ + KI+ EAG+P
Sbjct: 125 GVVGAITPFNFPANLFAHKIAPAIA-----VGNSVVVKPSSNTPLTAIELAKILEEAGLP 179
Query: 253 PGVVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNI--NVYKNFPRLIG 310
PGV+N V G GD I +P + I+FTGS VG I ++
Sbjct: 180 PGVINVVTGYGSEVGDEIVTNPKVNMISFTGSTA--------VGLLIASKAGGTGKKVAL 231
Query: 311 ECGGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
E GG + + A++E V+ +R FE GQ C+A R+ V E ++
Sbjct: 232 ELGGSDPMIVLKDADLERAVSIAVRGRFENAGQVCNAVKRILVEEEVY 279
>gnl|CDD|226683 COG4230, COG4230, Delta 1-pyrroline-5-carboxylate dehydrogenase
[Energy production and conversion].
Length = 769
Score = 109 bits (273), Expect = 1e-25
Identities = 62/161 (38%), Positives = 90/161 (55%), Gaps = 10/161 (6%)
Query: 199 GFVAAVSPFNFT-AI-GGNLAYTPALM-GSSVLWKPSD-TALLSNYTIYKIMIEAGVPPG 254
G V +SP+NF AI G +A AL G+SVL KP++ T L++ + +++ EAGVPPG
Sbjct: 238 GPVVCISPWNFPLAIFTGQIA--AALAAGNSVLAKPAEQTPLIAAQAV-RLLHEAGVPPG 294
Query: 255 VVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGG 314
V+ +P G G +TA +AG+ FTGS + Q+ K + P LI E GG
Sbjct: 295 VLQLLPGRGETVGAALTADARVAGVMFTGSTEVARLIQRQLAKRQG--RPIP-LIAETGG 351
Query: 315 KNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPE 355
+N + +SA E VV + SAF+ GQ+CSA + + E
Sbjct: 352 QNAMIVDSSALAEQVVADVLASAFDSAGQRCSALRVLCLQE 392
Score = 40.8 bits (96), Expect = 0.001
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 153 AGNYYINDKSTGSVVGQQPFGG 174
AGN Y+N G+VVG QPFGG
Sbjct: 529 AGNLYVNRNIVGAVVGVQPFGG 550
>gnl|CDD|143405 cd07086, ALDH_F7_AASADH-like, NAD+-dependent alpha-aminoadipic
semialdehyde dehydrogenase and related proteins. ALDH
subfamily which includes the NAD+-dependent,
alpha-aminoadipic semialdehyde dehydrogenase (AASADH,
EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1,
ALDH7B or delta-1-piperideine-6-carboxylate
dehydrogenase (P6CDH), and other similar sequences, such
as the uncharacterized aldehyde dehydrogenase of
Candidatus kuenenia AldH (locus CAJ73105).
Length = 478
Score = 106 bits (266), Expect = 6e-25
Identities = 56/168 (33%), Positives = 89/168 (52%), Gaps = 20/168 (11%)
Query: 199 GFVAAVSPFNF-TAIGG-NLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEA----GV 251
G V ++ FNF A+ G N A AL+ G++V+WKPS+T L+ + KI+ E G+
Sbjct: 135 GVVGVITAFNFPVAVPGWNAA--IALVCGNTVVWKPSETTPLTAIAVTKILAEVLEKNGL 192
Query: 252 PPGVVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNI--NVYKNFPRLI 309
PPGVVN V G G+ + P + ++FTGS +VG+ + V + F R++
Sbjct: 193 PPGVVNLVTGGGDG-GELLVHDPRVPLVSFTGST--------EVGRRVGETVARRFGRVL 243
Query: 310 GECGGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESL 357
E GG N + A+++ V + +A GQ+C+ R+ V ES+
Sbjct: 244 LELGGNNAIIVMDDADLDLAVRAVLFAAVGTAGQRCTTTRRLIVHESV 291
>gnl|CDD|143422 cd07104, ALDH_BenzADH-like, ALDH subfamily: NAD(P)+-dependent
benzaldehyde dehydrogenase II, vanillin dehydrogenase,
p-hydroxybenzaldehyde dehydrogenase and related
proteins. ALDH subfamily which includes the
NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC,
BenzADH, EC=1.2.1.28) involved in the oxidation of
benzyl alcohol to benzoate; p-hydroxybenzaldehyde
dehydrogenase (PchA, HBenzADH) which catalyzes the
oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic
acid; vanillin dehydrogenase (Vdh, VaniDH) involved in
the metabolism of ferulic acid as seen in Pseudomonas
putida KT2440; and other related sequences.
Length = 431
Score = 104 bits (262), Expect = 1e-24
Identities = 55/164 (33%), Positives = 83/164 (50%), Gaps = 12/164 (7%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPAL-MGSSVLWKPS-DTALLSNYTIYKIMIEAGVPPGVV 256
G V +SPFNF I + PAL +G++V+ KP T + I +I EAG+P GV+
Sbjct: 100 GVVGVISPFNFPLILAMRSVAPALALGNAVVLKPDSRTPVTGGLLIAEIFEEAGLPKGVL 159
Query: 257 NFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVY--KNFPRLIGECGG 314
N VP G GD + P + I+FTGS VG++I ++ ++ E GG
Sbjct: 160 NVVPGGGSEIGDALVEHPRVRMISFTGSTA--------VGRHIGELAGRHLKKVALELGG 211
Query: 315 KNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
N + A+++ V+ AF + GQ C A R+ V ES++
Sbjct: 212 NNPLIVLDDADLDLAVSAAAFGAFLHQGQICMAAGRILVHESVY 255
>gnl|CDD|143430 cd07112, ALDH_GABALDH-PuuC, Escherichia coli NADP+-dependent
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
PuuC-like. NADP+-dependent,
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
(GABALDH) PuuC of Escherichia coli which catalyzes the
conversion of putrescine to 4-aminobutanoate and other
similar sequences are present in this CD.
Length = 462
Score = 103 bits (259), Expect = 4e-24
Identities = 53/164 (32%), Positives = 83/164 (50%), Gaps = 13/164 (7%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 257
G V AV P+NF + PAL G+SV+ KP++ + L+ + ++ +EAG+P GV+N
Sbjct: 126 GVVGAVVPWNFPLLMAAWKIAPALAAGNSVVLKPAEQSPLTALRLAELALEAGLPAGVLN 185
Query: 258 FVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVY---KNFPRLIGECGG 314
VP G G+ + + + FTGS VG+ Y N R+ ECGG
Sbjct: 186 VVPGFGHTAGEALGLHMDVDALAFTGSTE--------VGRRFLEYSGQSNLKRVWLECGG 237
Query: 315 KNFHFIHASA-NVESVVNGTIRSAFEYCGQKCSACSRMYVPESL 357
K+ + + A A ++++ F G+ CSA SR+ V ES+
Sbjct: 238 KSPNIVFADAPDLDAAAEAAAAGIFWNQGEVCSAGSRLLVHESI 281
>gnl|CDD|143431 cd07113, ALDH_PADH_NahF, Escherichia coli NAD+-dependent
phenylacetaldehyde dehydrogenase PadA-like.
NAD+-dependent, homodimeric, phenylacetaldehyde
dehydrogenase (PADH, EC=1.2.1.39) PadA of Escherichia
coli involved in the catabolism of 2-phenylethylamine,
and other related sequences, are present in this CD.
Also included is the Pseudomonas fluorescens ST StyD
PADH involved in styrene catabolism, the Sphingomonas
sp. LB126 FldD protein involved in fluorene degradation,
and the Novosphingobium aromaticivorans NahF
salicylaldehyde dehydrogenase involved in the
NAD+-dependent conversion of salicylaldehyde to
salicylate.
Length = 477
Score = 102 bits (257), Expect = 9e-24
Identities = 60/189 (31%), Positives = 89/189 (47%), Gaps = 24/189 (12%)
Query: 173 GGGRMSALTFYLEVLASNLGRGEGLDGFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKP 231
G R +A T V G VA + P+NF+ + AL G +++ KP
Sbjct: 130 QGERYTAFTRREPV------------GVVAGIVPWNFSVMIAVWKIGAALATGCTIVIKP 177
Query: 232 SDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRL 291
S+ L+ + ++ EAG+P GV+N V G V G + + P +A ++FTGSV T
Sbjct: 178 SEFTPLTLLRVAELAKEAGIPDGVLNVVNGKGAV-GAQLISHPDVAKVSFTGSVAT---- 232
Query: 292 WLQVGKNIN--VYKNFPRLIGECGGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACS 349
GK I + R+ E GGKN A+++ VV G + + F + GQ C+A
Sbjct: 233 ----GKKIGRQAASDLTRVTLELGGKNAAAFLKDADIDWVVEGLLTAGFLHQGQVCAAPE 288
Query: 350 RMYVPESLF 358
R YV S F
Sbjct: 289 RFYVHRSKF 297
>gnl|CDD|143437 cd07119, ALDH_BADH-GbsA, Bacillus subtilis NAD+-dependent betaine
aldehyde dehydrogenase-like. Included in this CD is the
NAD+-dependent, betaine aldehyde dehydrogenase (BADH,
GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the
synthesis of the osmoprotectant glycine betaine from
choline or glycine betaine aldehyde.
Length = 482
Score = 101 bits (253), Expect = 3e-23
Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 11/162 (6%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 257
G ++P+N+ + PAL G++V+ KPS+ L+ +++++ EAG+P GVVN
Sbjct: 136 GVCGLITPWNYPLLQAAWKLAPALAAGNTVVIKPSEVTPLTTIALFELIEEAGLPAGVVN 195
Query: 258 FVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNI--NVYKNFPRLIGECGGK 315
V G G + SP + ++FTG G++I N ++ E GGK
Sbjct: 196 LVTGSGATVGAELAESPDVDLVSFTGG--------TATGRSIMRAAAGNVKKVALELGGK 247
Query: 316 NFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESL 357
N + + A A+ E+ V+ + F GQ CSA SR+ V ES+
Sbjct: 248 NPNIVFADADFETAVDQALNGVFFNAGQVCSAGSRLLVEESI 289
>gnl|CDD|237017 PRK11904, PRK11904, bifunctional proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1038
Score = 102 bits (256), Expect = 4e-23
Identities = 64/173 (36%), Positives = 94/173 (54%), Gaps = 25/173 (14%)
Query: 192 GRGEGLDGFVAAVSPFNFT-AI-GGNLAYTPALM-GSSVLWKPSD-TALLSNYTIYKIMI 247
GRG FV +SP+NF AI G +A AL G++V+ KP++ T L++ + K++
Sbjct: 684 GRGV----FVC-ISPWNFPLAIFLGQVA--AALAAGNTVIAKPAEQTPLIAAEAV-KLLH 735
Query: 248 EAGVPPGVVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVY---KN 304
EAG+P V+ +P DG G +TA P +AG+ FTGS T IN ++
Sbjct: 736 EAGIPKDVLQLLPGDGATVGAALTADPRIAGVAFTGSTETARI--------INRTLAARD 787
Query: 305 FP--RLIGECGGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPE 355
P LI E GG+N + ++A E VV+ + SAF GQ+CSA ++V E
Sbjct: 788 GPIVPLIAETGGQNAMIVDSTALPEQVVDDVVTSAFRSAGQRCSALRVLFVQE 840
Score = 41.7 bits (99), Expect = 7e-04
Identities = 25/86 (29%), Positives = 31/86 (36%), Gaps = 40/86 (46%)
Query: 153 AGNYYINDKSTGSVVGQQPFGGGRMSALTFYLEVLASNLGRGEGLDG------------- 199
GN Y+N G+VVG QPFGG +GL G
Sbjct: 977 VGNVYVNRNQIGAVVGVQPFGG--------------------QGLSGTGPKAGGPHYLLR 1016
Query: 200 FVA--AVSPFNFTAIGGNLAYTPALM 223
F V+ N TA GGN +L+
Sbjct: 1017 FATEKTVT-VNTTAAGGN----ASLL 1037
>gnl|CDD|143467 cd07149, ALDH_y4uC, Uncharacterized ALDH (y4uC) with similarity to
Tortula ruralis aldehyde dehydrogenase ALDH21A1.
Uncharacterized aldehyde dehydrogenase (ORF name y4uC)
with sequence similarity to the moss Tortula ruralis
aldehyde dehydrogenase ALDH21A1 (RNP123) believed to
play an important role in the detoxification of
aldehydes generated in response to desiccation- and
salinity-stress, and similar sequences are included in
this CD.
Length = 453
Score = 99 bits (250), Expect = 7e-23
Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 15/164 (9%)
Query: 199 GFVAAVSPFNFTAIGGNLA---YTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPG 254
G VAA++PFNF NL PA+ G++V+ KP+ LS + ++++EAG+P G
Sbjct: 125 GVVAAITPFNFPL---NLVAHKVGPAIAAGNAVVLKPASQTPLSALKLAELLLEAGLPKG 181
Query: 255 VVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGG 314
+N V G GD + P + I+FTGS VG+ I ++ E G
Sbjct: 182 ALNVVTGSGETVGDALVTDPRVRMISFTGSP--------AVGEAIARKAGLKKVTLELGS 233
Query: 315 KNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
+ A A++E V + AF GQ C + R++V E ++
Sbjct: 234 NAAVIVDADADLEKAVERCVSGAFANAGQVCISVQRIFVHEDIY 277
>gnl|CDD|143407 cd07088, ALDH_LactADH-AldA, Escherichia coli lactaldehyde
dehydrogenase AldA-like. Lactaldehyde dehydrogenase
from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an
NAD(+)-dependent enzyme involved in the metabolism of
L-fucose and L-rhamnose, and other similar sequences are
present in this CD.
Length = 468
Score = 100 bits (250), Expect = 8e-23
Identities = 52/162 (32%), Positives = 82/162 (50%), Gaps = 11/162 (6%)
Query: 199 GFVAAVSPFNFTA--IGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGV 255
G VA + P+NF I LA PAL+ G++++ KPS+ L+ +++ EAG+P GV
Sbjct: 135 GVVAGILPWNFPFFLIARKLA--PALVTGNTIVIKPSEETPLNALEFAELVDEAGLPAGV 192
Query: 256 VNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGGK 315
+N V G V GD + A P + I+ TGS ++ +NI ++ E GGK
Sbjct: 193 LNIVTGRGSVVGDALVAHPKVGMISLTGSTEAGQKIMEAAAENIT------KVSLELGGK 246
Query: 316 NFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESL 357
+ A+++ V + S CGQ C+ R+YV E +
Sbjct: 247 APAIVMKDADLDLAVKAIVDSRIINCGQVCTCAERVYVHEDI 288
>gnl|CDD|143412 cd07093, ALDH_F8_HMSADH, Human aldehyde dehydrogenase family 8
member A1-like. In humans, the aldehyde dehydrogenase
family 8 member A1 (ALDH8A1) protein functions to
convert 9-cis-retinal to 9-cis-retinoic acid and has a
preference for NAD+. Also included in this CD is the
2-hydroxymuconic semialdehyde dehydrogenase (HMSADH)
which catalyzes the conversion of 2-hydroxymuconic
semialdehyde to 4-oxalocrotonate, a step in the meta
cleavage pathway of aromatic hydrocarbons in bacteria.
Such HMSADHs seen here are: XylG of the TOL plasmid pWW0
of Pseudomonas putida, TomC of Burkholderia cepacia G4,
and AphC of Comamonas testosterone.
Length = 455
Score = 99.6 bits (249), Expect = 9e-23
Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 27/171 (15%)
Query: 199 GFVAAVSPFNF--------TAIGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEA 249
G ++P+N A PAL G++V+ KPS+ L+ + + ++ EA
Sbjct: 119 GVAGLITPWNLPLMLLTWKIA--------PALAFGNTVVLKPSEWTPLTAWLLAELANEA 170
Query: 250 GVPPGVVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNI--NVYKNFPR 307
G+PPGVVN V GP G + A P + I+FTG T G+ I N
Sbjct: 171 GLPPGVVNVVHGFGPEAGAALVAHPDVDLISFTGETAT--------GRTIMRAAAPNLKP 222
Query: 308 LIGECGGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
+ E GGKN + + A A+++ V+ +RS+F G+ C A SR+ V S++
Sbjct: 223 VSLELGGKNPNIVFADADLDRAVDAAVRSSFSNNGEVCLAGSRILVQRSIY 273
>gnl|CDD|143456 cd07138, ALDH_CddD_SSP0762, Rhodococcus ruber 6-oxolauric acid
dehydrogenase-like. The 6-oxolauric acid dehydrogenase
(CddD) from Rhodococcus ruber SC1 which converts
6-oxolauric acid to dodecanedioic acid, and the aldehyde
dehydrogenase (locus SSP0762) from Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305 and other
similar sequences, are included in this CD.
Length = 466
Score = 99.5 bits (249), Expect = 1e-22
Identities = 57/163 (34%), Positives = 85/163 (52%), Gaps = 15/163 (9%)
Query: 199 GFVAAVSPFNFTA--IGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGV 255
G ++P+N+ I +A PAL G +V+ KPS+ A LS + +I+ EAG+P GV
Sbjct: 132 GVCGLITPWNWPLNQIVLKVA--PALAAGCTVVLKPSEVAPLSAIILAEILDEAGLPAGV 189
Query: 256 VNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNI--NVYKNFPRLIGECG 313
N V DGPV G+ ++A P + ++FTGS GK + R+ E G
Sbjct: 190 FNLVNGDGPVVGEALSAHPDVDMVSFTGSTR--------AGKRVAEAAADTVKRVALELG 241
Query: 314 GKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPES 356
GK+ + I A++E V + + F GQ C+A +RM VP S
Sbjct: 242 GKSANIILDDADLEKAVPRGVAACFANSGQSCNAPTRMLVPRS 284
>gnl|CDD|143449 cd07131, ALDH_AldH-CAJ73105, Uncharacterized Candidatus kuenenia
aldehyde dehydrogenase AldH (CAJ73105)-like.
Uncharacterized aldehyde dehydrogenase of Candidatus
kuenenia AldH (locus CAJ73105) and similar sequences
with similarity to alpha-aminoadipic semialdehyde
dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31),
Arabidopsis ALDH7B4, and Streptomyces clavuligerus
delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH)
are included in this CD.
Length = 478
Score = 99.0 bits (247), Expect = 2e-22
Identities = 55/164 (33%), Positives = 90/164 (54%), Gaps = 13/164 (7%)
Query: 199 GFVAAVSPFNF-TAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVV 256
G VA ++P+NF AI + PAL+ G++V++KP++ + ++ EAG+PPGVV
Sbjct: 137 GVVALITPWNFPVAIPSWKIF-PALVCGNTVVFKPAEDTPACALKLVELFAEAGLPPGVV 195
Query: 257 NFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNIN--VYKNFPRLIGECGG 314
N V G G+ + P + ++FTGS +VG+ I + R+ E GG
Sbjct: 196 NVVHGRGEEVGEALVEHPDVDVVSFTGS--------TEVGERIGETCARPNKRVALEMGG 247
Query: 315 KNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
KN + A+++ + G + SAF GQ+C+A SR+ V ES++
Sbjct: 248 KNPIIVMDDADLDLALEGALWSAFGTTGQRCTATSRLIVHESVY 291
>gnl|CDD|233325 TIGR01238, D1pyr5carbox3, delta-1-pyrroline-5-carboxylate
dehydrogenase (PutA C-terminal domain). This model
represents one of several related branches of
delta-1-pyrroline-5-carboxylate dehydrogenase. Members
of this branch are the C-terminal domain of the PutA
bifunctional proline dehydrogenase /
delta-1-pyrroline-5-carboxylate dehydrogenase [Energy
metabolism, Amino acids and amines].
Length = 500
Score = 98.4 bits (245), Expect = 3e-22
Identities = 52/160 (32%), Positives = 84/160 (52%), Gaps = 8/160 (5%)
Query: 199 GFVAAVSPFNFT-AIGGNLAYTPALMGSSVLWKPSD-TALLSNYTIYKIMIEAGVPPGVV 256
G +SP+NF AI G++V+ KP++ T+L++ + ++M EAG P G +
Sbjct: 162 GVFVCISPWNFPLAIFTGQISAALAAGNTVIAKPAEQTSLIAYRAV-ELMQEAGFPAGTI 220
Query: 257 NFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFP-RLIGECGGK 315
+P G G +T+ P +AG+ FTGS + + + ++ P LI E GG+
Sbjct: 221 QLLPGRGADVGAALTSDPRIAGVAFTGSTEVAQLI----NQTLAQREDAPVPLIAETGGQ 276
Query: 316 NFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPE 355
N + ++A E VV +RSAF+ GQ+CSA + V E
Sbjct: 277 NAMIVDSTALPEQVVRDVLRSAFDSAGQRCSALRVLCVQE 316
Score = 38.0 bits (88), Expect = 0.009
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 153 AGNYYINDKSTGSVVGQQPFGGGRMS 178
GN Y+N G+VVG QPFGG +S
Sbjct: 455 VGNCYVNRNQVGAVVGVQPFGGQGLS 480
>gnl|CDD|143413 cd07094, ALDH_F21_LactADH-like, ALDH subfamily: NAD+-dependent,
lactaldehyde dehydrogenase, ALDH family 21 A1, and
related proteins. ALDH subfamily which includes Tortula
ruralis aldehyde dehydrogenase ALDH21A1 (RNP123), and
NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22)
and like sequences.
Length = 453
Score = 98.3 bits (245), Expect = 3e-22
Identities = 52/163 (31%), Positives = 78/163 (47%), Gaps = 13/163 (7%)
Query: 199 GFVAAVSPFNF--TAIGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGV 255
G V A++PFNF + LA PA+ G V+ KP+ LS + KI++EAGVP GV
Sbjct: 125 GVVLAITPFNFPLNLVAHKLA--PAIATGCPVVLKPASKTPLSALELAKILVEAGVPEGV 182
Query: 256 VNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGGK 315
+ V + V GD A +A ++FTGS L G R+ E GG
Sbjct: 183 LQVVTGEREVLGDAFAADERVAMLSFTGSAAVGEALRANAG--------GKRIALELGGN 234
Query: 316 NFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
+ A++++ + + F + GQ C + R+YV E L+
Sbjct: 235 APVIVDRDADLDAAIEALAKGGFYHAGQVCISVQRIYVHEELY 277
>gnl|CDD|143408 cd07089, ALDH_CddD-AldA-like, Rhodococcus ruber 6-oxolauric acid
dehydrogenase-like and related proteins. The
6-oxolauric acid dehydrogenase (CddD) from Rhodococcus
ruber SC1 which converts 6-oxolauric acid to
dodecanedioic acid; and the aldehyde dehydrogenase
(locus SSP0762) from Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305 and also, the Mycobacterium
tuberculosis H37Rv ALDH AldA (locus Rv0768) sequence;
and other similar sequences, are included in this CD.
Length = 459
Score = 98.1 bits (245), Expect = 3e-22
Identities = 49/162 (30%), Positives = 80/162 (49%), Gaps = 9/162 (5%)
Query: 199 GFVAAVSPFNFTAIGGNLA-YTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVV 256
G VAA++P+NF NLA PAL G++V+ KP+ LS + +I+ E +P GVV
Sbjct: 125 GVVAAITPWNF-PFFLNLAKLAPALAAGNTVVLKPAPDTPLSALLLGEIIAETDLPAGVV 183
Query: 257 NFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGGKN 316
N V G+ +T P + ++FTGS R+ Q + R++ E GGK+
Sbjct: 184 NVVTGSDNAVGEALTTDPRVDMVSFTGSTAVGRRIMAQAAATLK------RVLLELGGKS 237
Query: 317 FHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
+ + A++ + + GQ C+ +R+ VP S +
Sbjct: 238 ANIVLDDADLAAAAPAAVGVCMHNAGQGCALTTRLLVPRSRY 279
>gnl|CDD|143401 cd07082, ALDH_F11_NP-GAPDH, NADP+-dependent non-phosphorylating
glyceraldehyde 3-phosphate dehydrogenase and ALDH family
11. NADP+-dependent non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase (NP-GAPDH, EC=1.2.1.9)
catalyzes the irreversible oxidation of glyceraldehyde
3-phosphate to 3-phosphoglycerate generating NADPH for
biosynthetic reactions. This CD also includes the
Arabidopsis thaliana osmotic-stress-inducible ALDH
family 11, ALDH11A3 and similar sequences. In
autotrophic eukaryotes, NP-GAPDH generates NADPH for
biosynthetic processes from photosynthetic
glyceraldehyde-3-phosphate exported from the chloroplast
and catalyzes one of the classic glycolytic bypass
reactions unique to plants.
Length = 473
Score = 97.3 bits (243), Expect = 5e-22
Identities = 55/162 (33%), Positives = 80/162 (49%), Gaps = 15/162 (9%)
Query: 199 GFVAAVSPFNFTAIGGNLAYT---PAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPG 254
G V A+ PFN+ NL + PAL MG++V++KP+ +L + + +AG P G
Sbjct: 143 GVVLAIGPFNYPL---NLTVSKLIPALIMGNTVVFKPATQGVLLGIPLAEAFHDAGFPKG 199
Query: 255 VVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGG 314
VVN V G GD + + I+FTGS NRL Q RL+ E GG
Sbjct: 200 VVNVVTGRGREIGDPLVTHGRIDVISFTGSTEVGNRLKKQHPMK--------RLVLELGG 251
Query: 315 KNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPES 356
K+ + A++E ++ A Y GQ+C+A R+ V ES
Sbjct: 252 KDPAIVLPDADLELAAKEIVKGALSYSGQRCTAIKRVLVHES 293
>gnl|CDD|200131 TIGR01804, BADH, glycine betaine aldehyde dehydrogenase. Under
osmotic stress, betaine aldehyde dehydrogenase oxidizes
glycine betaine aldehyde into the osmoprotectant glycine
betaine, via the second of two oxidation steps from
exogenously supplied choline or betaine aldehyde. This
choline-glycine betaine synthesis pathway can be found
in gram-positive and gram-negative bacteria. In
Escherichia coli, betaine aldehyde dehydrogenase (betB)
is osmotically co-induced with choline dehydrogenase
(betA) in the presence of choline. These dehydrogenases
are located in a betaine gene cluster with the upstream
choline transporter (betT) and transcriptional regulator
(betI). Similar to E.coli, betaine synthesis in
Staphylococcus xylosus is also influenced by osmotic
stress and the presence of choline with genes localized
in a functionally equivalent gene cluster. Organization
of the betaine gene cluster in Sinorhizobium meliloti
and Bacillus subtilis differs from that of E.coli by the
absence of upstream choline transporter and
transcriptional regulator homologues. Additionally,
B.subtilis co-expresses a type II alcohol dehydrogenase
with betaine aldehyde dehydrogenase instead of choline
dehydrogenase as in E.coli, St.xylosus, and Si.meliloti.
Betaine aldehyde dehydrogenase is a member of the
aldehyde dehydrogenase family (pfam00171) [Cellular
processes, Adaptations to atypical conditions].
Length = 467
Score = 96.4 bits (240), Expect = 1e-21
Identities = 50/159 (31%), Positives = 79/159 (49%), Gaps = 11/159 (6%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 257
G + +N+ + PAL G+++++KPS+ L+ + +IM EAG+P GV N
Sbjct: 135 GVCVGIGAWNYPLQIASWKIAPALAAGNAMVFKPSENTPLTALKVAEIMEEAGLPKGVFN 194
Query: 258 FVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNI--NVYKNFPRLIGECGGK 315
V DG G + P +A ++FTG VPT GK I + + E GGK
Sbjct: 195 VVQGDGAEVGPLLVNHPDVAKVSFTGGVPT--------GKKIMAAAAGHLKHVTMELGGK 246
Query: 316 NFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVP 354
+ + A++ES V+G + F GQ CS +R++V
Sbjct: 247 SPLIVFDDADLESAVDGAMLGNFFSAGQVCSNGTRVFVH 285
>gnl|CDD|143410 cd07091, ALDH_F1-2_Ald2-like, ALDH subfamily: ALDH families 1and 2,
including 10-formyltetrahydrofolate dehydrogenase,
NAD+-dependent retinal dehydrogenase 1 and related
proteins. ALDH subfamily which includes the
NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1,
EC=1.2.1.36), also known as aldehyde dehydrogenase
family 1 member A1 (ALDH1A1), in humans, a
homotetrameric, cytosolic enzyme that catalyzes the
oxidation of retinaldehyde to retinoic acid. Human
ALDH1B1 and ALDH2 are also in this cluster; both are
mitochrondrial homotetramers which play important roles
in acetaldehyde oxidation; ALDH1B1 in response to UV
light exposure and ALDH2 during ethanol metabolism.
10-formyltetrahydrofolate dehydrogenase (FTHFDH,
EC=1.5.1.6), also known as aldehyde dehydrogenase family
1 member L1 (ALDH1L1), in humans, a multi-domain
homotetramer with an N-terminal formyl transferase
domain and a C-terminal ALDH domain. FTHFDH catalyzes an
NADP+-dependent dehydrogenase reaction resulting in the
conversion of 10-formyltetrahydrofolate to
tetrahydrofolate and CO2. Also included in this
subfamily is the Arabidosis aldehyde dehydrogenase
family 2 members B4 and B7 (EC=1.2.1.3), which are
mitochondrial, homotetramers that oxidize acetaldehyde
and glycolaldehyde, as well as, the Arabidosis
cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme
involved in the oxidation of sinapalehyde and
coniferaldehyde. Also included is the AldA aldehyde
dehydrogenase of Aspergillus nidulans (locus AN0554),
the aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5)
of Saccharomyces cerevisiae, and other similar
sequences.
Length = 476
Score = 95.4 bits (238), Expect = 3e-21
Identities = 66/214 (30%), Positives = 98/214 (45%), Gaps = 31/214 (14%)
Query: 149 LKYAAGNYYINDKSTGSVVGQQPFGGGRMSALTFYLEVLASNLGRGEGLDGFVAAVSPFN 208
L+Y AG DK G + P G + A T R E + G + P+N
Sbjct: 112 LRYYAG---WADKIQGKTI---PIDGNFL-AYT-----------RREPI-GVCGQIIPWN 152
Query: 209 FTAIGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFG 267
F + PAL G++V+ KP++ LS + +++ EAG PPGVVN VP GP G
Sbjct: 153 FPLLMLAWKLAPALAAGNTVVLKPAEQTPLSALYLAELIKEAGFPPGVVNIVPGFGPTAG 212
Query: 268 DTITASPYLAGINFTGSVPTFNRLWLQVGKNINVY---KNFPRLIGECGGKNFHFIHASA 324
I++ + I FTGS VG+ I N ++ E GGK+ + + A
Sbjct: 213 AAISSHMDVDKIAFTGST--------AVGRTIMEAAAKSNLKKVTLELGGKSPNIVFDDA 264
Query: 325 NVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
+++ V F GQ C A SR++V ES++
Sbjct: 265 DLDKAVEWAAFGIFFNQGQCCCAGSRIFVQESIY 298
>gnl|CDD|143420 cd07102, ALDH_EDX86601, Uncharacterized aldehyde dehydrogenase of
Synechococcus sp. PCC 7335 (EDX86601). Uncharacterized
aldehyde dehydrogenase of Synechococcus sp. PCC 7335
(locus EDX86601) and other similar sequences, are
present in this CD.
Length = 452
Score = 95.4 bits (238), Expect = 3e-21
Identities = 45/167 (26%), Positives = 72/167 (43%), Gaps = 20/167 (11%)
Query: 199 GFVAAVSPFN---FTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPG 254
G V ++P+N TA+ A PAL+ G++V+ K S L EAG+P G
Sbjct: 118 GVVLIIAPWNYPYLTAVN---AVIPALLAGNAVILKHSPQTPLCGERFAAAFAEAGLPEG 174
Query: 255 VVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIG---E 311
V + + A P + ++FTGSV + R I E
Sbjct: 175 VFQVLHLSHET-SAALIADPRIDHVSFTGSVAGGRAIQRAAA---------GRFIKVGLE 224
Query: 312 CGGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
GGK+ ++ A++++ + AF GQ C + R+YV ES++
Sbjct: 225 LGGKDPAYVRPDADLDAAAESLVDGAFFNSGQSCCSIERIYVHESIY 271
>gnl|CDD|236501 PRK09407, gabD2, succinic semialdehyde dehydrogenase; Reviewed.
Length = 524
Score = 94.9 bits (237), Expect = 5e-21
Identities = 56/167 (33%), Positives = 83/167 (49%), Gaps = 25/167 (14%)
Query: 199 GFVAAVSPFNF---TAIGGNLAYTPALM-GSSVLWKP-SDTALLSNYTIYKIMIEAGVPP 253
G V +SP+N+ A+ + PAL+ G++V+ KP S T L + + +++ EAG+P
Sbjct: 156 GVVGVISPWNYPLTLAVSDAI---PALLAGNAVVLKPDSQTPLTALAAV-ELLYEAGLPR 211
Query: 254 GVVNFVPADGPVFGDTITA-SPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIG-- 310
+ V GPV G + + YL FTGS T L Q G+ RLIG
Sbjct: 212 DLWQVVTGPGPVVGTALVDNADYLM---FTGSTATGRVLAEQAGR---------RLIGFS 259
Query: 311 -ECGGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPES 356
E GGKN + A+++ G +R+ F GQ C + R+YV ES
Sbjct: 260 LELGGKNPMIVLDDADLDKAAAGAVRACFSNAGQLCISIERIYVHES 306
>gnl|CDD|143421 cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde
dehydrogenase and ALDH family members 5A1 and 5F1-like.
Succinate-semialdehyde dehydrogenase, mitochondrial
(SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent
oxidation of succinate semialdehyde (SSA) to succinate.
This group includes the human aldehyde dehydrogenase
family 5 member A1 (ALDH5A1) which is a mitochondrial
homotetramer that converts SSA to succinate in the last
step of 4-aminobutyric acid (GABA) catabolism. This CD
also includes the Arabidopsis SSADH gene product
ALDH5F1. Mutations in this gene result in the
accumulation of H2O2, suggesting a role in plant defense
against the environmental stress of elevated reactive
oxygen species.
Length = 451
Score = 94.0 bits (235), Expect = 7e-21
Identities = 58/179 (32%), Positives = 84/179 (46%), Gaps = 30/179 (16%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPALM-----------GSSVLWKPSDTALLSNYTIYKIMI 247
G VAA++P+NF PA M G +V+ KP++ LS + ++
Sbjct: 119 GVVAAITPWNF----------PAAMITRKIAPALAAGCTVVLKPAEETPLSALALAELAE 168
Query: 248 EAGVPPGVVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPR 307
EAG+P GV+N V G+ + ASP + I+FTGS L Q + K R
Sbjct: 169 EAGLPAGVLNVVTGSPAEIGEALCASPRVRKISFTGSTAVGKLLMAQAADTV---K---R 222
Query: 308 LIGECGGKNFHFI-HASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF-CFCSCF 364
+ E GG N FI A+++ V+G I S F GQ C +R+YV ES++ F
Sbjct: 223 VSLELGG-NAPFIVFDDADLDKAVDGAIASKFRNAGQTCVCANRIYVHESIYDEFVEKL 280
>gnl|CDD|143414 cd07095, ALDH_SGSD_AstD, N-succinylglutamate 5-semialdehyde
dehydrogenase, AstD-like. N-succinylglutamate
5-semialdehyde dehydrogenase or succinylglutamic
semialdehyde dehydrogenase (SGSD, E. coli AstD,
EC=1.2.1.71) involved in L-arginine degradation via the
arginine succinyltransferase (AST) pathway and catalyzes
the NAD+-dependent reduction of succinylglutamate
semialdehyde into succinylglutamate.
Length = 431
Score = 93.9 bits (234), Expect = 7e-21
Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 15/163 (9%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSD-TALLSNYTIYKIMIEAGVPPGVV 256
G +A PFNF N PAL+ G++V++KPS+ T ++ + ++ EAG+PPGV+
Sbjct: 99 GVMAVFGPFNFPGHLPNGHIVPALLAGNTVVFKPSELTPAVAELMV-ELWEEAGLPPGVL 157
Query: 257 NFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNIN-VYKNFPRLIG--ECG 313
N V G+ + A + G+ FTGS G ++ + P I E G
Sbjct: 158 NLVQGGRET-GEALAAHEGIDGLLFTGSA--------ATGLLLHRQFAGRPGKILALEMG 208
Query: 314 GKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPES 356
G N + A++++ ++SAF GQ+C+ R+ VP+
Sbjct: 209 GNNPLVVWDVADIDAAAYLIVQSAFLTAGQRCTCARRLIVPDG 251
>gnl|CDD|143419 cd07101, ALDH_SSADH2_GabD2, Mycobacterium tuberculosis
succinate-semialdehyde dehydrogenase 2-like.
Succinate-semialdehyde dehydrogenase 2 (SSADH2) and
similar proteins are in this CD. SSADH1 (GabD1,
EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation
of succinate semialdehyde to succinate. SSADH activity
in Mycobacterium tuberculosis is encoded by both gabD1
(Rv0234c) and gabD2 (Rv1731), however ,the Vmax of GabD1
was shown to be much higher than that of GabD2, and
GabD2 (SSADH2) is likely to serve physiologically as a
dehydrogenase for a different aldehyde(s).
Length = 454
Score = 93.9 bits (234), Expect = 8e-21
Identities = 56/176 (31%), Positives = 88/176 (50%), Gaps = 26/176 (14%)
Query: 199 GFVAAVSPFNF---TAIGGNLAYTPALM-GSSVLWKP-SDTALLSNYTIYKIMIEAGVPP 253
G V +SP+N+ A+ + PAL+ G++V+ KP S TAL + + + +++IEAG+P
Sbjct: 120 GVVGVISPWNYPLTLAVSDAI---PALLAGNAVVLKPDSQTALTALWAV-ELLIEAGLPR 175
Query: 254 GVVNFVPADGPVFGDTITA-SPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIG-- 310
+ V G G I + Y+ FTGS T + + G+ RLIG
Sbjct: 176 DLWQVVTGPGSEVGGAIVDNADYVM---FTGSTATGRVVAERAGR---------RLIGCS 223
Query: 311 -ECGGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLFC-FCSCF 364
E GGKN + A+++ G +R+ F GQ C + R+YV ES++ F F
Sbjct: 224 LELGGKNPMIVLEDADLDKAAAGAVRACFSNAGQLCVSIERIYVHESVYDEFVRRF 279
>gnl|CDD|237018 PRK11905, PRK11905, bifunctional proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1208
Score = 94.9 bits (237), Expect = 9e-21
Identities = 60/167 (35%), Positives = 88/167 (52%), Gaps = 22/167 (13%)
Query: 199 GFVAAVSPFNFT-AI-GGNLAYTPALM-GSSVLWKPSD-TALLSNYTIYKIMIEAGVPPG 254
G V +SP+NF AI G +A AL+ G++VL KP++ T L++ + +++ EAGVP
Sbjct: 678 GPVVCISPWNFPLAIFTGQIA--AALVAGNTVLAKPAEQTPLIAARAV-RLLHEAGVPKD 734
Query: 255 VVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNIN------VYKNFPRL 308
+ +P DG G + A P +AG+ FTGS +V + I P L
Sbjct: 735 ALQLLPGDGRTVGAALVADPRIAGVMFTGST--------EVARLIQRTLAKRSGPPVP-L 785
Query: 309 IGECGGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPE 355
I E GG+N + +SA E VV I SAF+ GQ+CSA + + E
Sbjct: 786 IAETGGQNAMIVDSSALPEQVVADVIASAFDSAGQRCSALRVLCLQE 832
Score = 39.8 bits (94), Expect = 0.003
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 153 AGNYYINDKSTGSVVGQQPFGG 174
AGN Y+N G+VVG QPFGG
Sbjct: 969 AGNIYVNRNIIGAVVGVQPFGG 990
>gnl|CDD|143427 cd07109, ALDH_AAS00426, Uncharacterized Saccharopolyspora spinosa
aldehyde dehydrogenase (AAS00426)-like. Uncharacterized
aldehyde dehydrogenase of Saccharopolyspora spinosa
(AAS00426) and other similar sequences, are present in
this CD.
Length = 454
Score = 92.7 bits (231), Expect = 2e-20
Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 15/165 (9%)
Query: 199 GFVAAVSPFNFTA--IGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGV 255
G + P+N+ G ++A PAL G++V+ KP++ A L+ + ++ EAG+P G
Sbjct: 119 GVTGHIIPWNYPLQITGRSVA--PALAAGNAVVVKPAEDAPLTALRLAELAEEAGLPAGA 176
Query: 256 VNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNI--NVYKNFPRLIGECG 313
+N V G G + A P + I+FTGSV T G + +N + E G
Sbjct: 177 LNVVTGLGAEAGAALVAHPGVDHISFTGSVET--------GIAVMRAAAENVVPVTLELG 228
Query: 314 GKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
GK+ + A A++E+ + + + + GQ CSA SR+ V S++
Sbjct: 229 GKSPQIVFADADLEAALPVVVNAIIQNAGQTCSAGSRLLVHRSIY 273
>gnl|CDD|143424 cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative
aldehyde dehydrogenase AldA (AAD23400)-like. Putative
aldehyde dehydrogenase, AldA, from Streptomyces
aureofaciens (locus AAD23400) and other similar
sequences are present in this CD.
Length = 446
Score = 90.7 bits (226), Expect = 8e-20
Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 13/163 (7%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 257
G VAA+ P+NF + PAL+ G++V+ KPS L + ++ E +PPGV+N
Sbjct: 116 GVVAAIVPWNFPLLLAAWKIAPALLAGNTVVLKPSPFTPLCTLKLGELAQEV-LPPGVLN 174
Query: 258 FVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNI--NVYKNFPRLIGECGGK 315
V + G +T+ P + I+FTGS T GK + + K R+ E GG
Sbjct: 175 VVSGGDEL-GPALTSHPDIRKISFTGSTAT--------GKKVMASAAKTLKRVTLELGGN 225
Query: 316 NFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
+ + ++++V AF GQ C+A R+YV ES++
Sbjct: 226 DAAIVLPDVDIDAVAPKLFWGAFINSGQVCAAIKRLYVHESIY 268
>gnl|CDD|236989 PRK11809, putA, trifunctional transcriptional regulator/proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1318
Score = 91.2 bits (227), Expect = 2e-19
Identities = 63/160 (39%), Positives = 83/160 (51%), Gaps = 21/160 (13%)
Query: 199 GFVAAVSPFNFT-AI-GGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGV 255
G V +SP+NF AI G +A AL G+SVL KP++ L +I++EAGVP GV
Sbjct: 770 GPVVCISPWNFPLAIFTGQVA--AALAAGNSVLAKPAEQTPLIAAQAVRILLEAGVPAGV 827
Query: 256 VNFVPADGPVFGDTITASPYLAGINFTGS--VPTF------NRLWLQVGKNINVYKNFPR 307
V +P G G + A + G+ FTGS V RL Q G+ I P
Sbjct: 828 VQLLPGRGETVGAALVADARVRGVMFTGSTEVARLLQRNLAGRLDPQ-GRPI------P- 879
Query: 308 LIGECGGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSA 347
LI E GG+N + +SA E VV + SAF+ GQ+CSA
Sbjct: 880 LIAETGGQNAMIVDSSALTEQVVADVLASAFDSAGQRCSA 919
Score = 39.6 bits (93), Expect = 0.003
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 153 AGNYYINDKSTGSVVGQQPFGG 174
GN Y+N G+VVG QPFGG
Sbjct: 1066 VGNLYVNRNMVGAVVGVQPFGG 1087
>gnl|CDD|143425 cd07107, ALDH_PhdK-like, Nocardioides 2-carboxybenzaldehyde
dehydrogenase, PhdK-like. Nocardioides sp. strain
KP72-carboxybenzaldehyde dehydrogenase (PhdK), an enzyme
involved in phenanthrene degradation, and other similar
sequences, are present in this CD.
Length = 456
Score = 88.6 bits (220), Expect = 5e-19
Identities = 51/165 (30%), Positives = 78/165 (47%), Gaps = 15/165 (9%)
Query: 199 GFVAAVSPFN----FTAIGGNLAYTPALMGSSVLWKPSDTALLSNYTIYKIMIEAGVPPG 254
G VA + FN F A +A P G++V+ KP + A LS + ++ E +PPG
Sbjct: 118 GVVARIVAFNHPLMFAA--AKIA-APLAAGNTVVVKPPEQAPLSALRLAELAREV-LPPG 173
Query: 255 VVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGG 314
V N +P DG G + P + I GSVPT + + I + E GG
Sbjct: 174 VFNILPGDGATAGAALVRHPDVKRIALIGSVPTGRAIMRAAAEGIK------HVTLELGG 227
Query: 315 KNFHFIHASANVESVVNGTIRSA-FEYCGQKCSACSRMYVPESLF 358
KN + A+ E+ + + F +CGQ C + SR++V ES++
Sbjct: 228 KNALIVFPDADPEAAADAAVAGMNFTWCGQSCGSTSRLFVHESIY 272
>gnl|CDD|181873 PRK09457, astD, succinylglutamic semialdehyde dehydrogenase;
Reviewed.
Length = 487
Score = 86.6 bits (215), Expect = 3e-18
Identities = 54/161 (33%), Positives = 78/161 (48%), Gaps = 11/161 (6%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 257
G VA P+NF N PAL+ G++V++KPS+ K+ +AG+P GV+N
Sbjct: 136 GVVAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSELTPWVAELTVKLWQQAGLPAGVLN 195
Query: 258 FVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIG--ECGGK 315
V G G + A P + G+ FTGS T L Q P I E GG
Sbjct: 196 LVQG-GRETGKALAAHPDIDGLLFTGSANTGYLLHRQFAGQ-------PEKILALEMGGN 247
Query: 316 NFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPES 356
N I A++++ V+ I+SAF GQ+C+ R+ VP+
Sbjct: 248 NPLVIDEVADIDAAVHLIIQSAFISAGQRCTCARRLLVPQG 288
>gnl|CDD|215157 PLN02278, PLN02278, succinic semialdehyde dehydrogenase.
Length = 498
Score = 85.9 bits (213), Expect = 4e-18
Identities = 53/166 (31%), Positives = 80/166 (48%), Gaps = 17/166 (10%)
Query: 199 GFVAAVSPFNFTAIGGNLAY-----TPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVP 252
G V A++P+NF LA PAL G +V+ KPS+ L+ ++ ++AG+P
Sbjct: 162 GVVGAITPWNFP-----LAMITRKVGPALAAGCTVVVKPSELTPLTALAAAELALQAGIP 216
Query: 253 PGVVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGEC 312
PGV+N V D P GD + ASP + I FTGS +L + R+ E
Sbjct: 217 PGVLNVVMGDAPEIGDALLASPKVRKITFTGSTAVGKKLMAGAAATVK------RVSLEL 270
Query: 313 GGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
GG + A+++ V G + S F GQ C +R+ V E ++
Sbjct: 271 GGNAPFIVFDDADLDVAVKGALASKFRNSGQTCVCANRILVQEGIY 316
>gnl|CDD|143409 cd07090, ALDH_F9_TMBADH, NAD+-dependent
4-trimethylaminobutyraldehyde dehydrogenase, ALDH family
9A1. NAD+-dependent, 4-trimethylaminobutyraldehyde
dehydrogenase (TMABADH, EC=1.2.1.47), also known as
aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in
humans, is a cytosolic tetramer which catalyzes the
oxidation of gamma-aminobutyraldehyde involved in
4-aminobutyric acid (GABA) biosynthesis and also
oxidizes betaine aldehyde
(gamma-trimethylaminobutyraldehyde) which is involved in
carnitine biosynthesis.
Length = 457
Score = 85.4 bits (212), Expect = 5e-18
Identities = 49/140 (35%), Positives = 74/140 (52%), Gaps = 12/140 (8%)
Query: 220 PALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASPYLAG 278
PAL G+++++KPS L+ + +I+ EAG+P GV N V G G + P +A
Sbjct: 139 PALACGNAMVYKPSPFTPLTALLLAEILTEAGLPDGVFNVVQGGGET-GQLLCEHPDVAK 197
Query: 279 INFTGSVPTFNRLWLQVGKNI--NVYKNFPRLIGECGGKNFHFIHASANVESVVNGTIRS 336
++FTGSVPT GK + K + E GGK+ I A++E+ VNG + +
Sbjct: 198 VSFTGSVPT--------GKKVMSAAAKGIKHVTLELGGKSPLIIFDDADLENAVNGAMMA 249
Query: 337 AFEYCGQKCSACSRMYVPES 356
F GQ CS +R++V S
Sbjct: 250 NFLSQGQVCSNGTRVFVQRS 269
>gnl|CDD|143470 cd07152, ALDH_BenzADH, NAD-dependent benzaldehyde dehydrogenase
II-like. NAD-dependent, benzaldehyde dehydrogenase II
(XylC, BenzADH, EC=1.2.1.28) is involved in the
oxidation of benzyl alcohol to benzoate. In
Acinetobacter calcoaceticus, this process is carried out
by the chromosomally encoded, benzyl alcohol
dehydrogenase (xylB) and benzaldehyde dehydrogenase II
(xylC) enzymes; whereas in Pseudomonas putida they are
encoded by TOL plasmids.
Length = 443
Score = 85.0 bits (211), Expect = 6e-18
Identities = 50/163 (30%), Positives = 80/163 (49%), Gaps = 13/163 (7%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPAL-MGSSVLWKPS-DTALLSNYTIYKIMIEAGVPPGVV 256
G V +SPFNF I + PAL +G++V+ KP T + I ++ EAG+P GV+
Sbjct: 112 GVVGVISPFNFPLILAMRSVAPALALGNAVVLKPDPRTPVSGGVVIARLFEEAGLPAGVL 171
Query: 257 NFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVY--KNFPRLIGECGG 314
+ +P G+ + P +A I+FTGS VG+ + ++ ++ E GG
Sbjct: 172 HVLPGGADA-GEALVEDPNVAMISFTGST--------AVGRKVGEAAGRHLKKVSLELGG 222
Query: 315 KNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESL 357
KN + A+++ + AF + GQ C A R V ES+
Sbjct: 223 KNALIVLDDADLDLAASNGAWGAFLHQGQICMAAGRHLVHESV 265
>gnl|CDD|143469 cd07151, ALDH_HBenzADH, NADP+-dependent p-hydroxybenzaldehyde
dehydrogenase-like. NADP+-dependent,
p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH)
which catalyzes oxidation of p-hydroxybenzaldehyde to
p-hydroxybenzoic acid and other related sequences are
included in this CD.
Length = 465
Score = 84.7 bits (210), Expect = 8e-18
Identities = 55/167 (32%), Positives = 85/167 (50%), Gaps = 18/167 (10%)
Query: 199 GFVAAVSPFNFTAIGGNLA---YTPAL-MGSSVLWKP-SDTALLSNYTIYKIMIEAGVPP 253
G V +SP+NF +L+ PAL +G++V+ KP SDT + + KI EAG+P
Sbjct: 132 GVVGVISPWNFPL---HLSMRSVAPALALGNAVVLKPASDTPITGGLLLAKIFEEAGLPK 188
Query: 254 GVVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNIN--VYKNFPRLIGE 311
GV+N V G GD P I+FTGS P VG++I ++ ++ E
Sbjct: 189 GVLNVVVGAGSEIGDAFVEHPVPRLISFTGSTP--------VGRHIGELAGRHLKKVALE 240
Query: 312 CGGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
GG N + A++++ VN + F + GQ C A +R+ V E ++
Sbjct: 241 LGGNNPFVVLEDADIDAAVNAAVFGKFLHQGQICMAINRIIVHEDVY 287
>gnl|CDD|143423 cd07105, ALDH_SaliADH, Salicylaldehyde dehydrogenase, DoxF-like.
Salicylaldehyde dehydrogenase (DoxF, SaliADH,
EC=1.2.1.65) involved in the upper naphthalene catabolic
pathway of Pseudomonas strain C18 and other similar
sequences are present in this CD.
Length = 432
Score = 83.8 bits (208), Expect = 1e-17
Identities = 50/164 (30%), Positives = 82/164 (50%), Gaps = 14/164 (8%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 257
G V ++P+N I G A L G++V+ K S+ + +++ I ++ EAG+P GV+N
Sbjct: 100 GVVLGIAPWNAPVILGTRAIAYPLAAGNTVVLKASELSPRTHWLIGRVFHEAGLPKGVLN 159
Query: 258 FV---PADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNI--NVYKNFPRLIGEC 312
V P D P + + A P + +NFTGS +VG+ I K+ ++ E
Sbjct: 160 VVTHSPEDAPEVVEALIAHPAVRKVNFTGST--------RVGRIIAETAAKHLKPVLLEL 211
Query: 313 GGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPES 356
GGK + A++++ N + AF GQ C + R+ V ES
Sbjct: 212 GGKAPAIVLEDADLDAAANAALFGAFLNSGQICMSTERIIVHES 255
>gnl|CDD|143448 cd07130, ALDH_F7_AASADH, NAD+-dependent alpha-aminoadipic
semialdehyde dehydrogenase, ALDH family members 7A1 and
7B. Alpha-aminoadipic semialdehyde dehydrogenase
(AASADH, EC=1.2.1.31), also known as ALDH7A1,
Antiquitin-1, ALDH7B, or
delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH),
is a NAD+-dependent ALDH. Human ALDH7A1 is involved in
the pipecolic acid pathway of lysine catabolism,
catalyzing the oxidation of alpha-aminoadipic
semialdehyde to alpha-aminoadipate. Arabidopsis
thaliana ALDH7B4 appears to be an
osmotic-stress-inducible ALDH gene encoding a
turgor-responsive or stress-inducible ALDH. The
Streptomyces clavuligerus P6CDH appears to be involved
in cephamycin biosynthesis, catalyzing the second stage
of the two-step conversion of lysine to
alpha-aminoadipic acid. The ALDH7A1 enzyme and others
in this group have been observed as tetramers, yet the
bacterial P6CDH enzyme has been reported as a monomer.
Length = 474
Score = 84.2 bits (209), Expect = 2e-17
Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 20/168 (11%)
Query: 199 GFVAAVSPFNF-TAIGG-NLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEA----GV 251
G V ++ FNF A+ G N A AL+ G+ V+WKPS T L+ + KI+ G+
Sbjct: 134 GVVGVITAFNFPVAVWGWNAAI--ALVCGNVVVWKPSPTTPLTAIAVTKIVARVLEKNGL 191
Query: 252 PPGVVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGK--NINVYKNFPRLI 309
P + + V V G+ + P + ++FTGS VG+ V F R +
Sbjct: 192 PGAIASLVCGGADV-GEALVKDPRVPLVSFTGST--------AVGRQVGQAVAARFGRSL 242
Query: 310 GECGGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESL 357
E GG N + A+++ V + +A GQ+C+ R+ V ES+
Sbjct: 243 LELGGNNAIIVMEDADLDLAVRAVLFAAVGTAGQRCTTTRRLIVHESI 290
>gnl|CDD|132260 TIGR03216, OH_muco_semi_DH, 2-hydroxymuconic semialdehyde
dehydrogenase. Members of this protein family are
2-hydroxymuconic semialdehyde dehydrogenase. Many
aromatic compounds are catabolized by way of the
catechol, via the meta-cleavage pathway, to pyruvate and
acetyl-CoA. This enzyme performs the second of seven
steps in that pathway for catechol degradation [Energy
metabolism, Other].
Length = 481
Score = 83.2 bits (206), Expect = 3e-17
Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 10/163 (6%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 257
G V +SP+N + PAL G++V+ KPS+ + + ++M GVP GV N
Sbjct: 141 GVVGVISPWNLPLLLMTWKVGPALACGNTVVVKPSEETPGTATLLGEVMNAVGVPKGVYN 200
Query: 258 FVPADGP-VFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIG-ECGGK 315
V GP G+ +T P + I FTG T + + + + + E GGK
Sbjct: 201 VVHGFGPDSAGEFLTRHPGVDAITFTGETRTGSAIMKAAADGV-------KPVSFELGGK 253
Query: 316 NFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
N + A + ++ V G +RSAF GQ C R+YV +F
Sbjct: 254 NAAIVFADCDFDAAVAGILRSAFLNTGQVCLGTERVYVERPIF 296
>gnl|CDD|143457 cd07139, ALDH_AldA-Rv0768, Mycobacterium tuberculosis aldehyde
dehydrogenase AldA-like. The Mycobacterium
tuberculosis NAD+-dependent, aldehyde dehydrogenase PDB
structure, 3B4W, and the Mycobacterium tuberculosis
H37Rv aldehyde dehydrogenase AldA (locus Rv0768)
sequence, as well as the Rhodococcus rhodochrous ALDH
involved in haloalkane catabolism, and other similar
sequences, are included in this CD.
Length = 471
Score = 83.0 bits (206), Expect = 3e-17
Identities = 55/161 (34%), Positives = 81/161 (50%), Gaps = 12/161 (7%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 257
G VAA+ P+N L PAL G +V+ KPS L Y + + EAG+PPGVVN
Sbjct: 139 GVVAAIVPWNAPLFLAALKIAPALAAGCTVVLKPSPETPLDAYLLAEAAEEAGLPPGVVN 198
Query: 258 FVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVY--KNFPRLIGECGGK 315
VPAD V G+ + P + ++FTGS G+ I + R+ E GGK
Sbjct: 199 VVPADREV-GEYLVRHPGVDKVSFTGST--------AAGRRIAAVCGERLARVTLELGGK 249
Query: 316 NFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPES 356
+ + A++++ V G + ++ GQ C A +R+ VP S
Sbjct: 250 SAAIVLDDADLDAAVPGLVPASLMNNGQVCVALTRILVPRS 290
>gnl|CDD|188167 TIGR01780, SSADH, succinate-semialdehyde dehydrogenase. Succinic
semialdehyde dehydrogenase is one of three enzymes
constituting 4-aminobutyrate (GABA) degradation in both
prokaryotes and eukaryotes, catalyzing the
(NAD(P)+)-dependent catabolism reaction of succinic
semialdehyde to succinate for metabolism by the citric
acid cycle. The EC number depends on the cofactor:
1.2.1.24 for NAD only, 1.2.1.79 for NADP only, and
1.2.1.16 if both can be used. In Escherichia coli,
succinic semialdehyde dehydrogenase is located in an
unidirectionally transcribed gene cluster encoding
enzymes for GABA degradation and is suggested to be
cotranscribed with succinic semialdehyde transaminase
from a common promoter upstream of SSADH. Similar gene
arrangements can be found in characterized Ralstonia
eutropha and the genome analysis of Bacillus subtilis.
Prokaryotic succinic semialdehyde dehydrogenases
(1.2.1.16) share high sequence homology to characterized
succinic semialdehyde dehydrogenases from rat and human
(1.2.1.24), exhibiting conservation of proposed cofactor
binding residues, and putative active sites (G-237 &
G-242, C-293 & G-259 respectively of rat SSADH).
Eukaryotic SSADH enzymes exclusively utilize NAD+ as a
cofactor, exhibiting little to no NADP+ activity. While
a NADP+ preference has been detected in prokaryotes in
addition to both NADP+- and NAD+-dependencies as in
E.coli, Pseudomonas, and Klebsiella pneumoniae. The
function of this alternative SSADH currently is unknown,
but has been suggested to play a possible role in
4-hydroxyphenylacetic degradation. Just outside the
scope of this model, are several sequences belonging to
clades scoring between trusted and noise. These
sequences may be actual SSADH enzymes, but lack
sufficiently close characterized homologs to make a
definitive assignment at this time. SSADH enzyme belongs
to the aldehyde dehydrogenase family (pfam00171),
sharing a common evolutionary origin and enzymatic
mechanism with lactaldehyde dehydrogenase. Like in
lactaldehyde dehydrogenase and succinate semialdehyde
dehydrogenase, the mammalian catalytic glutamic acid and
cysteine residues are conserved in all the enzymes of
this family (PS00687, PS00070) [Central intermediary
metabolism, Other].
Length = 448
Score = 82.9 bits (205), Expect = 3e-17
Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 8/162 (4%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 257
G AA++P+NF A AL G +V+ KP++ LS + ++ +AG+P GV+N
Sbjct: 119 GVCAAITPWNFPAAMITRKAGAALAAGCTVVVKPAEQTPLSALALARLAEQAGIPKGVLN 178
Query: 258 FVPAD-GPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGGKN 316
+ G+ +T SP + I+FTGS L Q + ++ E GG
Sbjct: 179 VITGSRAKEVGNVLTTSPLVRKISFTGSTNVGKILMKQSASTVK------KVSMELGGNA 232
Query: 317 FHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
+ A+++ V G + S F GQ C +R+YV + ++
Sbjct: 233 PFIVFDDADLDQAVEGAMASKFRNAGQTCVCANRLYVHDGIY 274
>gnl|CDD|143428 cd07110, ALDH_F10_BADH, Arabidopsis betaine aldehyde dehydrogenase
1 and 2, ALDH family 10A8 and 10A9-like. Present in
this CD are the Arabidopsis betaine aldehyde
dehydrogenase (BADH) 1 (chloroplast) and 2
(mitochondria), also known as, aldehyde dehydrogenase
family 10 member A8 and aldehyde dehydrogenase family 10
member A9, respectively, and are putative dehydration-
and salt-inducible BADHs (EC 1.2.1.8) that catalyze the
oxidation of betaine aldehyde to the compatible solute
glycine betaine.
Length = 456
Score = 82.8 bits (205), Expect = 4e-17
Identities = 53/160 (33%), Positives = 81/160 (50%), Gaps = 7/160 (4%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 257
G V ++P+NF + PAL G +V+ KPS+ L+ + +I EAG+PPGV+N
Sbjct: 122 GVVGLITPWNFPLLMAAWKVAPALAAGCTVVLKPSELTSLTELELAEIAAEAGLPPGVLN 181
Query: 258 FVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGGKNF 317
V G G + A P + I+FTGS T +++ ++I + E GGK+
Sbjct: 182 VVTGTGDEAGAPLAAHPGIDKISFTGSTATGSQVMQAAAQDIK------PVSLELGGKSP 235
Query: 318 HFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESL 357
+ A++E V + F GQ CSA SR+ V ES+
Sbjct: 236 IIVFDDADLEKAVEWAMFGCFWNNGQICSATSRLLVHESI 275
>gnl|CDD|131352 TIGR02299, HpaE, 5-carboxymethyl-2-hydroxymuconate semialdehyde
dehydrogenase. This model represents the dehydrogenase
responsible for the conversion of
5-carboxymethyl-2-hydroxymuconate semialdehyde to
5-carboxymethyl-2-hydroxymuconate (a tricarboxylic
acid). This is the step in the degradation of
4-hydroxyphenylacetic acid via homoprotocatechuate
following the oxidative opening of the aromatic ring.
Length = 488
Score = 82.2 bits (203), Expect = 6e-17
Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 7/161 (4%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 257
G V ++P+N + PAL G++V+ KP++ + L+ + +I EAG+P GV N
Sbjct: 137 GPVGLITPWNAPFMLSTWKIAPALAFGNTVVLKPAEWSPLTAARLAEIAKEAGLPDGVFN 196
Query: 258 FVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGGKNF 317
V G G + A P + ++FTG T + + + R E GGK+
Sbjct: 197 LVHGFGEEAGKALVAHPDVKAVSFTGETATGSIIMRNGADTLK------RFSMELGGKSP 250
Query: 318 HFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
+ A++E ++ + F + G++C+A SR+ V ES+
Sbjct: 251 VIVFDDADLERALDAVVFMIFSFNGERCTASSRLLVQESIA 291
>gnl|CDD|143411 cd07092, ALDH_ABALDH-YdcW, Escherichia coli NAD+-dependent
gamma-aminobutyraldehyde dehydrogenase YdcW-like.
NAD+-dependent, tetrameric, gamma-aminobutyraldehyde
dehydrogenase (ABALDH), YdcW of Escherichia coli K12,
catalyzes the oxidation of gamma-aminobutyraldehyde to
gamma-aminobutyric acid. ABALDH can also oxidize n-alkyl
medium-chain aldehydes, but with a lower catalytic
efficiency.
Length = 450
Score = 81.6 bits (202), Expect = 8e-17
Identities = 52/163 (31%), Positives = 83/163 (50%), Gaps = 12/163 (7%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 257
G VA ++P+N+ + PAL G++V+ KPS+T L+ + ++ E +PPGVVN
Sbjct: 120 GVVAQIAPWNYPLMMAAWKIAPALAAGNTVVLKPSETTPLTTLLLAELAAE-VLPPGVVN 178
Query: 258 FVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNI--NVYKNFPRLIGECGGK 315
V G GD + A P + ++ TGSV T GK + R+ E GGK
Sbjct: 179 VVCGGGASAGDALVAHPRVRMVSLTGSVRT--------GKKVARAAADTLKRVHLELGGK 230
Query: 316 NFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
+ A++++ V G + + GQ C+A R+YV ES++
Sbjct: 231 APVIVFDDADLDAAVAGIATAGYYNAGQDCTAACRVYVHESVY 273
>gnl|CDD|143426 cd07108, ALDH_MGR_2402, Magnetospirillum NAD(P)+-dependent aldehyde
dehydrogenase MSR-1-like. NAD(P)+-dependent aldehyde
dehydrogenase of Magnetospirillum gryphiswaldense MSR-1
(MGR_2402) , and other similar sequences, are present in
this CD.
Length = 457
Score = 81.6 bits (202), Expect = 1e-16
Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 15/165 (9%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 257
G V A+ P+N + L PAL G++V+ K ++ A L+ + +I+ + +P GV+N
Sbjct: 119 GVVGAILPWNAPLMLAALKIAPALVAGNTVVLKAAEDAPLAVLLLAEILAQV-LPAGVLN 177
Query: 258 FVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIG---ECGG 314
+ G G + P + + FTGS +VGK I RLI E GG
Sbjct: 178 VITGYGEECGAALVDHPDVDKVTFTGST--------EVGKII-YRAAADRLIPVSLELGG 228
Query: 315 KNFHFIHASANVESVVNGTIRSA-FEYCGQKCSACSRMYVPESLF 358
K+ + A+++ V+G I F GQ C+A SR++V E ++
Sbjct: 229 KSPMIVFPDADLDDAVDGAIAGMRFTRQGQSCTAGSRLFVHEDIY 273
>gnl|CDD|143404 cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase
and ALDH family members 6A1 and 6B2. Methylmalonate
semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27)
[acylating] from Bacillus subtilis is involved in valine
metabolism and catalyses the NAD+- and CoA-dependent
oxidation of methylmalonate semialdehyde into
propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and
Arabidopsis MMSDH ALDH6B2 are also present in this CD.
Length = 478
Score = 81.0 bits (201), Expect = 1e-16
Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 28/162 (17%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPALM-------GSSVLWKPSDTALLSNYTIYKIMIEAGV 251
G VA ++PFNF A+ P M G++ + KPS+ + + +++ EAG+
Sbjct: 138 GVVAGITPFNFPAM------IPLWMFPMAIACGNTFVLKPSERVPGAAMRLAELLQEAGL 191
Query: 252 PPGVVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVY----KNFPR 307
P GV+N V + + P + ++F GS P VG+ I Y N R
Sbjct: 192 PDGVLNVVHGGKEA-VNALLDHPDIKAVSFVGSTP--------VGEYI--YERAAANGKR 240
Query: 308 LIGECGGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACS 349
+ G KN + A++E N + +AF GQ+C A S
Sbjct: 241 VQALGGAKNHAVVMPDADLEQTANALVGAAFGAAGQRCMALS 282
>gnl|CDD|143436 cd07118, ALDH_SNDH, Gluconobacter oxydans L-sorbosone
dehydrogenase-like. Included in this CD is the
L-sorbosone dehydrogenase (SNDH) from Gluconobacter
oxydans UV10. In G. oxydans, D-sorbitol is converted to
2-keto-L-gulonate (a precursor of L-ascorbic acid) in
sequential oxidation steps catalyzed by a FAD-dependent,
L-sorbose dehydrogenase and an NAD(P)+-dependent,
L-sorbosone dehydrogenase.
Length = 454
Score = 80.8 bits (200), Expect = 2e-16
Identities = 49/163 (30%), Positives = 83/163 (50%), Gaps = 13/163 (7%)
Query: 199 GFVAAVSPFNFTA--IGGNLAYTPALMGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVV 256
G V ++P+NF + L + A G +V+ KPS+ + + +++IEAG+P GVV
Sbjct: 121 GVVGIITPWNFPFLILSQKLPFALA-AGCTVVVKPSEFTSGTTLMLAELLIEAGLPAGVV 179
Query: 257 NFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNI--NVYKNFPRLIGECGG 314
N V G G +T P + ++FTGS VGK I +N ++ E GG
Sbjct: 180 NIVTGYGATVGQAMTEHPDVDMVSFTGSTR--------VGKAIAAAAARNLKKVSLELGG 231
Query: 315 KNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESL 357
KN + A A++++ + + + G+ C++ SR+ V ES+
Sbjct: 232 KNPQIVFADADLDAAADAVVFGVYFNAGECCNSGSRLLVHESI 274
>gnl|CDD|143462 cd07144, ALDH_ALD2-YMR170C, Saccharomyces cerevisiae aldehyde
dehydrogenase 2 (YMR170c)-like. NAD(P)+-dependent
Saccharomyces cerevisiae aldehyde dehydrogenase 2
(YMR170c, ALD5, EC=1.2.1.5) and other similar sequences,
are present in this CD.
Length = 484
Score = 80.9 bits (200), Expect = 2e-16
Identities = 52/161 (32%), Positives = 77/161 (47%), Gaps = 7/161 (4%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 257
G + P+N+ PAL G++V+ KP++ LS ++ EAG PPGVVN
Sbjct: 146 GVCGQIIPWNYPLAMAAWKLAPALAAGNTVVIKPAENTPLSLLYFANLVKEAGFPPGVVN 205
Query: 258 FVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGGKNF 317
+P G V G + P + I FTGS T RL ++ N + ECGGK+
Sbjct: 206 IIPGYGAVAGSALAEHPDVDKIAFTGSTAT-GRLVMKAAAQ-----NLKAVTLECGGKSP 259
Query: 318 HFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
+ A+++ V GQ C+A SR+YV ES++
Sbjct: 260 ALVFEDADLDQAVKWAAAGIMYNSGQNCTATSRIYVQESIY 300
>gnl|CDD|143429 cd07111, ALDH_F16, Aldehyde dehydrogenase family 16A1-like.
Uncharacterized aldehyde dehydrogenase family 16 member
A1 (ALDH16A1) and other related sequences are present in
this CD. The active site cysteine and glutamate residues
are not conserved in the human ALDH16A1 protein
sequence.
Length = 480
Score = 80.1 bits (198), Expect = 3e-16
Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 12/163 (7%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 257
G V + P+NF + PAL MG++V+ KP++ L+ +I EAG+PPGV+N
Sbjct: 149 GVVGQIVPWNFPLLMLAWKICPALAMGNTVVLKPAEYTPLTALLFAEICAEAGLPPGVLN 208
Query: 258 FVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNIN--VYKNFPRLIGECGGK 315
V +G FG + P + + FTGS VG+ + +L E GGK
Sbjct: 209 IVTGNGS-FGSALANHPGVDKVAFTGSTE--------VGRALRRATAGTGKKLSLELGGK 259
Query: 316 NFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
+ + A+++S V G + + + GQ C A SR+ V ES+
Sbjct: 260 SPFIVFDDADLDSAVEGIVDAIWFNQGQVCCAGSRLLVQESVA 302
>gnl|CDD|132284 TIGR03240, arg_catab_astD, succinylglutamic semialdehyde
dehydrogenase. Members of this protein family are
succinylglutamic semialdehyde dehydrogenase (EC
1.2.1.71), the fourth enzyme in the arginine
succinyltransferase (AST) pathway for arginine
catabolism [Energy metabolism, Amino acids and amines].
Length = 484
Score = 79.4 bits (196), Expect = 6e-16
Identities = 51/159 (32%), Positives = 77/159 (48%), Gaps = 7/159 (4%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 257
G VA P+NF N PAL+ G++V++KPS+ K+ +AG+P GV+N
Sbjct: 134 GVVAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSELTPWVAEETVKLWEKAGLPAGVLN 193
Query: 258 FVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGGKNF 317
V G + A P + G+ FTGS T + L Q L E GG N
Sbjct: 194 LVQG-ARETGVALAAHPDIDGLLFTGSSNTGHLLHRQFAGRPEKI-----LALEMGGNNP 247
Query: 318 HFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPES 356
+ A++++ V+ I+SAF GQ+C+ R+ VP+
Sbjct: 248 LIVDEVADIDAAVHLIIQSAFISAGQRCTCARRLLVPDG 286
>gnl|CDD|143459 cd07141, ALDH_F1AB_F2_RALDH1, NAD+-dependent retinal dehydrogenase
1, ALDH families 1A, 1B, and 2-like. NAD+-dependent
retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36)
also known as aldehyde dehydrogenase family 1 member A1
(ALDH1A1) in humans, is a homotetrameric, cytosolic
enzyme that catalyzes the oxidation of retinaldehyde to
retinoic acid. Human ALDH1B1 and ALDH2 are also in this
cluster; both are mitochrondrial homotetramers which
play important roles in acetaldehyde oxidation; ALDH1B1
in response to UV light exposure and ALDH2 during
ethanol metabolism.
Length = 481
Score = 78.5 bits (194), Expect = 1e-15
Identities = 55/164 (33%), Positives = 83/164 (50%), Gaps = 12/164 (7%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 257
G + P+NF + PAL G++V+ KP++ L+ + ++ EAG PPGVVN
Sbjct: 147 GVCGQIIPWNFPLLMAAWKLAPALACGNTVVLKPAEQTPLTALYLASLIKEAGFPPGVVN 206
Query: 258 FVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINV---YKNFPRLIGECGG 314
VP GP G I++ P + + FTGS +VGK I N R+ E GG
Sbjct: 207 VVPGYGPTAGAAISSHPDIDKVAFTGST--------EVGKLIQQAAGKSNLKRVTLELGG 258
Query: 315 KNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
K+ + + A A+++ V + F GQ C A SR +V ES++
Sbjct: 259 KSPNIVFADADLDYAVEQAHEALFFNMGQCCCAGSRTFVQESIY 302
>gnl|CDD|183918 PRK13252, PRK13252, betaine aldehyde dehydrogenase; Provisional.
Length = 488
Score = 78.0 bits (193), Expect = 1e-15
Identities = 44/141 (31%), Positives = 75/141 (53%), Gaps = 12/141 (8%)
Query: 220 PAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASPYLAG 278
PAL G+++++KPS+ L+ + +I EAG+P GV N V DG V G +T P +A
Sbjct: 165 PALAAGNAMIFKPSEVTPLTALKLAEIYTEAGLPDGVFNVVQGDGRV-GAWLTEHPDIAK 223
Query: 279 INFTGSVPTFNRLWLQVGKNI--NVYKNFPRLIGECGGKNFHFIHASANVESVVNGTIRS 336
++FTG VPT GK + + + E GGK+ + A+++ + + +
Sbjct: 224 VSFTGGVPT--------GKKVMAAAAASLKEVTMELGGKSPLIVFDDADLDRAADIAMLA 275
Query: 337 AFEYCGQKCSACSRMYVPESL 357
F GQ C+ +R++V +S+
Sbjct: 276 NFYSSGQVCTNGTRVFVQKSI 296
>gnl|CDD|182108 PRK09847, PRK09847, gamma-glutamyl-gamma-aminobutyraldehyde
dehydrogenase; Provisional.
Length = 494
Score = 78.0 bits (192), Expect = 2e-15
Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 7/161 (4%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 257
G +AA+ P+NF + PAL G+SV+ KPS+ + LS + + EAG+P GV+N
Sbjct: 159 GVIAAIVPWNFPLLLTCWKLGPALAAGNSVILKPSEKSPLSAIRLAGLAKEAGLPDGVLN 218
Query: 258 FVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGGKNF 317
V G G ++ + I FTGS T +L G + N R+ E GGK+
Sbjct: 219 VVTGFGHEAGQALSRHNDIDAIAFTGSTRTGKQLLKDAGDS-----NMKRVWLEAGGKSA 273
Query: 318 HFIHASA-NVESVVNGTIRSAFEYCGQKCSACSRMYVPESL 357
+ + A +++ + T F GQ C A +R+ + ES+
Sbjct: 274 NIVFADCPDLQQAASATAAGIFYNQGQVCIAGTRLLLEESI 314
>gnl|CDD|143464 cd07146, ALDH_PhpJ, Streptomyces putative phosphonoformaldehyde
dehydrogenase PhpJ-like. Putative phosphonoformaldehyde
dehydrogenase (PhpJ), an aldehyde dehydrogenase homolog
reportedly involved in the biosynthesis of
phosphinothricin tripeptides in Streptomyces
viridochromogenes DSM 40736, and similar sequences are
included in this CD.
Length = 451
Score = 77.4 bits (191), Expect = 2e-15
Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 15/162 (9%)
Query: 199 GFVAAVSPFNFTAIGGNLAYT---PALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPG 254
G V A++PFN N PA+ + ++ KPS+ LS + ++ EAG+PP
Sbjct: 122 GVVLAITPFNHPL---NQVAHKIAPAIAANNRIVLKPSEKTPLSAIYLADLLYEAGLPPD 178
Query: 255 VVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGG 314
+++ V + GD + P + + FTG V VGK I + R + E GG
Sbjct: 179 MLSVVTGEPGEIGDELITHPDVDLVTFTGGVA--------VGKAIAATAGYKRQLLELGG 230
Query: 315 KNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPES 356
+ + A++E + ++ GQ+C+A R+ V ES
Sbjct: 231 NDPLIVMDDADLERAATLAVAGSYANSGQRCTAVKRILVHES 272
>gnl|CDD|143461 cd07143, ALDH_AldA_AN0554, Aspergillus nidulans aldehyde
dehydrogenase, AldA (AN0554)-like. NAD(P)+-dependent
aldehyde dehydrogenase (AldA) of Aspergillus nidulans
(locus AN0554), and other similar sequences, are present
in this CD.
Length = 481
Score = 75.6 bits (186), Expect = 1e-14
Identities = 52/161 (32%), Positives = 81/161 (50%), Gaps = 6/161 (3%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 257
G + P+NF + PAL G++++ KPS+ LS + K++ EAG PPGV+N
Sbjct: 146 GVCGQIIPWNFPLLMCAWKIAPALAAGNTIVLKPSELTPLSALYMTKLIPEAGFPPGVIN 205
Query: 258 FVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGGKNF 317
V G G+ I++ + + FTGS R ++ N+ K + E GGK+
Sbjct: 206 VVSGYGRTCGNAISSHMDIDKVAFTGST-LVGRKVMEAAAKSNLKK----VTLELGGKSP 260
Query: 318 HFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
+ + A++ES V T F GQ C A SR+YV E ++
Sbjct: 261 NIVFDDADLESAVVWTAYGIFFNHGQVCCAGSRIYVQEGIY 301
>gnl|CDD|132294 TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde
dehydrogenase. This family of genes are members of the
pfam00171 NAD-dependent aldehyde dehydrogenase family.
These genes are observed in Ralstonia eutropha JMP134,
Sinorhizobium meliloti 1021, Burkholderia mallei ATCC
23344, Burkholderia thailandensis E264, Burkholderia
cenocepacia AU 1054, Burkholderia pseudomallei K96243
and 1710b, Burkholderia xenovorans LB400, Burkholderia
sp. 383 and Polaromonas sp. JS666 in close proximity to
the PhnW gene (TIGR02326) encoding 2-aminoethyl
phosphonate aminotransferase (which generates
phosphonoacetaldehyde) and PhnA (TIGR02335) encoding
phosphonoacetate hydrolase (not to be confused with the
alkylphosphonate utilization operon protein PhnA modeled
by TIGR00686). Additionally, transporters believed to be
specific for 2-aminoethyl phosphonate are often present.
PhnW is, in other organisms, coupled with PhnX
(TIGR01422) for the degradation of phosphonoacetaldehyde
(GenProp0238), but PhnX is apparently absent in each of
the organisms containing this aldehyde reductase. PhnA,
characterized in a strain of Pseudomonas fluorescens
that has not het been genome sequenced, is only rarely
found outside of the PhnW and aldehyde dehydrogenase
context. For instance in Rhodopseudomonas and Bordetella
bronchiseptica, where it is adjacent to transporters
presumably specific for the import of phosphonoacetate.
It seems reasonably certain then, that this enzyme
catalyzes the NAD-dependent oxidation of
phosphonoacetaldehyde to phosphonoacetate, bridging the
metabolic gap between PhnW and PhnA. We propose the name
phosphonoacetaldehyde dehydrogenase and the gene symbol
PhnY for this enzyme.
Length = 472
Score = 74.1 bits (182), Expect = 3e-14
Identities = 46/166 (27%), Positives = 85/166 (51%), Gaps = 13/166 (7%)
Query: 195 EGLDGFVAAVSPFN--FTAIGGNLAYTPALMGSS-VLWKPSDTALLSNYTIYKIMIEAGV 251
E L G ++A++PFN + +A PA+ ++ ++ KPS+ LS + I+ EAG+
Sbjct: 137 EPLLGVISAITPFNHPMNQVAHKIA--PAIATNNRMVVKPSEKTPLSALYLADILYEAGL 194
Query: 252 PPGVVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGE 311
PP ++ V D D + +P++ + FTG V +GK I + R + E
Sbjct: 195 PPQMLQVVTGDPREIADELITNPHVDLVTFTGGVA--------IGKYIAARAGYRRQVLE 246
Query: 312 CGGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESL 357
GG + + A+++ + ++ +++ GQ+C+A RM V ES+
Sbjct: 247 LGGNDPLIVMEDADLDRAADLAVKGSYKNSGQRCTAVKRMLVQESV 292
>gnl|CDD|143438 cd07120, ALDH_PsfA-ACA09737, Pseudomonas putida aldehyde
dehydrogenase PsfA (ACA09737)-like. Included in this CD
is the aldehyde dehydrogenase (PsfA, locus ACA09737) of
Pseudomonas putida involved in furoic acid metabolism.
Transcription of psfA was induced in response to
2-furoic acid, furfuryl alcohol, and furfural.
Length = 455
Score = 73.9 bits (182), Expect = 3e-14
Identities = 47/164 (28%), Positives = 71/164 (43%), Gaps = 12/164 (7%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEA-GVPPGVV 256
G + P+N + + PAL G +V+ KP+ N I +I+ E +P GVV
Sbjct: 119 GVAGIIVPWNSPVVLLVRSLAPALAAGCTVVVKPAGQTAQINAAIIRILAEIPSLPAGVV 178
Query: 257 NFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNI--NVYKNFPRLIGECGG 314
N G + ASP + I+FTGS T G+ I RL E GG
Sbjct: 179 NLFTESGSEGAAHLVASPDVDVISFTGSTAT--------GRAIMAAAAPTLKRLGLELGG 230
Query: 315 KNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
K + A++++ + R+ + GQ C A SR+ V S+
Sbjct: 231 KTPCIVFDDADLDAALPKLERALTIFAGQFCMAGSRVLVQRSIA 274
>gnl|CDD|183050 PRK11241, gabD, succinate-semialdehyde dehydrogenase I;
Provisional.
Length = 482
Score = 72.6 bits (178), Expect = 9e-14
Identities = 47/161 (29%), Positives = 78/161 (48%), Gaps = 7/161 (4%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 257
G AA++P+NF A PAL G +++ KP+ S + ++ I AG+P GV N
Sbjct: 148 GVTAAITPWNFPAAMITRKAGPALAAGCTMVLKPASQTPFSALALAELAIRAGIPAGVFN 207
Query: 258 FVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGGKNF 317
V G +T++P + ++FTGS +L Q K+I ++ E GG
Sbjct: 208 VVTGSAGAVGGELTSNPLVRKLSFTGSTEIGRQLMEQCAKDIK------KVSLELGGNAP 261
Query: 318 HFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
+ A+++ V G + S F GQ C +R+YV + ++
Sbjct: 262 FIVFDDADLDKAVEGALASKFRNAGQTCVCANRLYVQDGVY 302
>gnl|CDD|215260 PLN02467, PLN02467, betaine aldehyde dehydrogenase.
Length = 503
Score = 72.5 bits (178), Expect = 1e-13
Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 7/160 (4%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 257
G V ++P+N+ + PAL G + + KPS+ A ++ + I E G+PPGV+N
Sbjct: 153 GVVGLITPWNYPLLMATWKVAPALAAGCTAVLKPSELASVTCLELADICREVGLPPGVLN 212
Query: 258 FVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGGKNF 317
V G G + + P + I FTGS T ++ + + P + E GGK+
Sbjct: 213 VVTGLGTEAGAPLASHPGVDKIAFTGSTATGRKIMTAAAQMVK-----PVSL-ELGGKSP 266
Query: 318 HFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESL 357
+ +++ V + F GQ CSA SR+ V E +
Sbjct: 267 IIVFDDVDLDKAVEWAMFGCFWTNGQICSATSRLLVHERI 306
>gnl|CDD|143460 cd07142, ALDH_F2BC, Arabidosis aldehyde dehydrogenase family 2 B4,
B7, C4-like. Included in this CD is the Arabidosis
aldehyde dehydrogenase family 2 members B4 and B7
(EC=1.2.1.3), which are mitochondrial homotetramers
that oxidize acetaldehyde and glycolaldehyde, but not
L-lactaldehyde. Also in this group, is the Arabidosis
cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme
involved in the oxidation of sinapalehyde and
coniferaldehyde.
Length = 476
Score = 71.8 bits (176), Expect = 1e-13
Identities = 52/164 (31%), Positives = 77/164 (46%), Gaps = 12/164 (7%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 257
G V + P+NF + PAL G++++ KP++ LS K+ EAG+P GV+N
Sbjct: 143 GVVGQIIPWNFPLLMFAWKVGPALACGNTIVLKPAEQTPLSALLAAKLAAEAGLPDGVLN 202
Query: 258 FVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNI---NVYKNFPRLIGECGG 314
V GP G I + + + FTGS +VGK I N + E GG
Sbjct: 203 IVTGFGPTAGAAIASHMDVDKVAFTGST--------EVGKIIMQLAAKSNLKPVTLELGG 254
Query: 315 KNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
K+ + A+V+ V + F GQ C A SR +V ES++
Sbjct: 255 KSPFIVCEDADVDKAVELAHFALFFNQGQCCCAGSRTFVHESIY 298
>gnl|CDD|237391 PRK13473, PRK13473, gamma-aminobutyraldehyde dehydrogenase;
Provisional.
Length = 475
Score = 71.5 bits (176), Expect = 2e-13
Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 16/165 (9%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 257
G VA+++P+N+ + PAL G++V+ KPS+ L+ + ++ + +PPGV+N
Sbjct: 140 GVVASIAPWNYPLMMAAWKLAPALAAGNTVVLKPSEITPLTALKLAELAADI-LPPGVLN 198
Query: 258 FVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNI--NVYKNFPRLIGECGGK 315
V G GD + P + ++ TGS+ T GK++ + R E GGK
Sbjct: 199 VVTGRGATVGDALVGHPKVRMVSLTGSIAT--------GKHVLSAAADSVKRTHLELGGK 250
Query: 316 NFHFIHASANVESVVNGTIRSAFEYC--GQKCSACSRMYVPESLF 358
+ A++++VV G IR F Y GQ C+A R+Y ++
Sbjct: 251 APVIVFDDADLDAVVEG-IR-TFGYYNAGQDCTAACRIYAQRGIY 293
>gnl|CDD|143417 cd07099, ALDH_DDALDH, Methylomonas sp.
4,4'-diapolycopene-dialdehyde dehydrogenase-like. The
4,4'-diapolycopene-dialdehyde dehydrogenase (DDALDH)
involved in C30 carotenoid synthesis in Methylomonas sp.
strain 16a and other similar sequences are present in
this CD. DDALDH converts 4,4'-diapolycopene-dialdehyde
into 4,4'-diapolycopene-diacid.
Length = 453
Score = 70.7 bits (174), Expect = 3e-13
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 19/166 (11%)
Query: 199 GFVAAVSPFNF---TAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPG 254
G V +SP+N+ T +G + PAL G++V+ KPS+ L + + AG P G
Sbjct: 121 GVVGVISPWNYPLLTPMGDII---PALAAGNAVVLKPSEVTPLVGELLAEAWAAAGPPQG 177
Query: 255 VVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVY--KNFPRLIGEC 312
V+ V DG I A + FTGSV T G+ + + ++ E
Sbjct: 178 VLQVVTGDGATGAALIDAGVDK--VAFTGSVAT--------GRKVMAAAAERLIPVVLEL 227
Query: 313 GGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
GGK+ + A A++E + A GQ C + R+YV ES++
Sbjct: 228 GGKDPMIVLADADLERAAAAAVWGAMVNAGQTCISVERVYVHESVY 273
>gnl|CDD|132417 TIGR03374, ABALDH, 1-pyrroline dehydrogenase. Members of this
protein family are 1-pyrroline dehydrogenase (1.5.1.35),
also called gamma-aminobutyraldehyde dehydrogenase. This
enzyme can follow putrescine transaminase (EC 2.6.1.82)
for a two-step conversion of putrescine to
gamma-aminobutyric acid (GABA). The member from
Escherichia coli is characterized as a homotetramer that
binds one NADH per momomer. This enzyme belongs to the
medium-chain aldehyde dehydrogenases, and is quite
similar in sequence to the betaine aldehyde
dehydrogenase (EC 1.2.1.8) family.
Length = 472
Score = 70.4 bits (172), Expect = 4e-13
Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 8/161 (4%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 257
G VA+++P+N+ + PAL G+ V+ KPS+ L+ + ++ + P GVVN
Sbjct: 139 GVVASIAPWNYPLMMAAWKLAPALAAGNCVVLKPSEITPLTALKLAELAKDI-FPAGVVN 197
Query: 258 FVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGGKNF 317
+ G GD +T + ++ TGS+ T + +I R E GGK
Sbjct: 198 ILFGRGKTVGDPLTGHEKVRMVSLTGSIATGEHILSHTAPSIK------RTHMELGGKAP 251
Query: 318 HFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
+ A++++VV G F GQ C+A R+Y ++
Sbjct: 252 VIVFDDADIDAVVEGVRTFGFYNAGQDCTAACRIYAQRGIY 292
>gnl|CDD|182233 PRK10090, PRK10090, aldehyde dehydrogenase A; Provisional.
Length = 409
Score = 70.2 bits (172), Expect = 4e-13
Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 11/163 (6%)
Query: 199 GFVAAVSPFNFT--AIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGV 255
G + P+NF I +A PAL+ G++++ KPS+ + KI+ E G+P GV
Sbjct: 73 GVTTGILPWNFPFFLIARKMA--PALLTGNTIVIKPSEFTPNNAIAFAKIVDEIGLPKGV 130
Query: 256 VNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGGK 315
N V G G + +P +A ++ TGSV ++ KNI ++ E GGK
Sbjct: 131 FNLVLGRGETVGQELAGNPKVAMVSMTGSVSAGEKIMAAAAKNIT------KVCLELGGK 184
Query: 316 NFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
+ A+++ V + S GQ C+ R+YV + ++
Sbjct: 185 APAIVMDDADLDLAVKAIVDSRVINSGQVCNCAERVYVQKGIY 227
>gnl|CDD|143465 cd07147, ALDH_F21_RNP123, Aldehyde dehydrogenase family 21A1-like.
Aldehyde dehydrogenase ALDH21A1 (gene name RNP123) was
first described in the moss Tortula ruralis and is
believed to play an important role in the detoxification
of aldehydes generated in response to desiccation- and
salinity-stress, and ALDH21A1 expression represents a
unique stress tolerance mechanism. So far, of plants,
only the bryophyte sequence has been observed, but
similar protein sequences from bacteria and archaea are
also present in this CD.
Length = 452
Score = 70.0 bits (172), Expect = 5e-13
Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 16/164 (9%)
Query: 199 GFVAAVSPFNFTAIGGNLA---YTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPG 254
G V+A++PFNF NL PA+ G + KP+ LS + +++ E G+P G
Sbjct: 125 GPVSAITPFNFPL---NLVAHKVAPAIAAGCPFVLKPASRTPLSALILGEVLAETGLPKG 181
Query: 255 VVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGG 314
+ +P D + + ++FTGS L + GK +++ E GG
Sbjct: 182 AFSVLPCSRDD-ADLLVTDERIKLLSFTGSPAVGWDLKARAGKK--------KVVLELGG 232
Query: 315 KNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
+ + A+++ I AF GQ C + R+ V S++
Sbjct: 233 NAAVIVDSDADLDFAAQRIIFGAFYQAGQSCISVQRVLVHRSVY 276
>gnl|CDD|143458 cd07140, ALDH_F1L_FTFDH, 10-formyltetrahydrofolate dehydrogenase,
ALDH family 1L. 10-formyltetrahydrofolate dehydrogenase
(FTHFDH, EC=1.5.1.6), also known as aldehyde
dehydrogenase family 1 member L1 (ALDH1L1) in humans, is
a multi-domain homotetramer with an N-terminal formyl
transferase domain and a C-terminal ALDH domain. FTHFDH
catalyzes an NADP+-dependent dehydrogenase reaction
resulting in the conversion of 10-formyltetrahydrofolate
to tetrahydrofolate and CO2. The ALDH domain is also
capable of the oxidation of short chain aldehydes to
their corresponding acids.
Length = 486
Score = 69.1 bits (169), Expect = 1e-12
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 16/165 (9%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPA---LMGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGV 255
G V P+N+ + LA+ A G++V+ KP+ L+ ++ ++AG P GV
Sbjct: 149 GVCGIVIPWNYPLM--MLAWKMAACLAAGNTVVLKPAQVTPLTALKFAELTVKAGFPKGV 206
Query: 256 VNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNIN---VYKNFPRLIGEC 312
+N +P G + G ++ P + + FTGS P +GK+I N ++ E
Sbjct: 207 INILPGSGSLVGQRLSDHPDVRKLGFTGSTP--------IGKHIMKSCAVSNLKKVSLEL 258
Query: 313 GGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESL 357
GGK+ I A +++ V + S F G+ C A R++V ES+
Sbjct: 259 GGKSPLIIFADCDMDKAVRMGMSSVFFNKGENCIAAGRLFVEESI 303
>gnl|CDD|143435 cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus
AldA1 (SACOL0154) aldehyde dehydrogenase-like.
Uncharacterized aldehyde dehydrogenase from
Staphylococcus aureus (AldA1, locus SACOL0154) and other
similar sequences are present in this CD.
Length = 475
Score = 68.2 bits (167), Expect = 2e-12
Identities = 53/164 (32%), Positives = 79/164 (48%), Gaps = 14/164 (8%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 257
G V + P+NF + PAL G++V+ KPS T LS + KI I+ +P GVVN
Sbjct: 138 GVVGQIIPWNFPFLMAAWKLAPALAAGNTVVIKPSSTTSLSLLELAKI-IQDVLPKGVVN 196
Query: 258 FVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIG---ECGG 314
V G G+ + P L + FTGS +VG+++ + +LI E GG
Sbjct: 197 IVTGKGSKSGEYLLNHPGLDKLAFTGST--------EVGRDVAIAAA-KKLIPATLELGG 247
Query: 315 KNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
K+ + I AN + + G GQ C A SR++V E ++
Sbjct: 248 KSANIIFDDANWDKALEGAQLGILFNQGQVCCAGSRIFVQEGIY 291
>gnl|CDD|215410 PLN02766, PLN02766, coniferyl-aldehyde dehydrogenase.
Length = 501
Score = 66.8 bits (163), Expect = 7e-12
Identities = 50/164 (30%), Positives = 78/164 (47%), Gaps = 12/164 (7%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 257
G V + P+NF + + PAL G +++ KP++ LS + AGVP GV+N
Sbjct: 160 GVVGHIIPWNFPSTMFFMKVAPALAAGCTMVVKPAEQTPLSALFYAHLAKLAGVPDGVIN 219
Query: 258 FVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNI---NVYKNFPRLIGECGG 314
V GP G I + + ++FTGS +VG+ I N ++ E GG
Sbjct: 220 VVTGFGPTAGAAIASHMDVDKVSFTGST--------EVGRKIMQAAATSNLKQVSLELGG 271
Query: 315 KNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
K+ I A+V+ V+ + F G+ C A SR+YV E ++
Sbjct: 272 KSPLLIFDDADVDMAVDLALLGIFYNKGEICVASSRVYVQEGIY 315
>gnl|CDD|143403 cd07084, ALDH_KGSADH-like, ALDH subfamily: NAD(P)+-dependent
alpha-ketoglutaric semialdehyde dehydrogenases and plant
delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH
family 12-like. ALDH subfamily which includes the
NAD(P)+-dependent, alpha-ketoglutaric semialdehyde
dehydrogenases (KGSADH, EC 1.2.1.26); plant
delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
EC=1.5.1.12 ), ALDH family 12; the N-terminal domain of
the MaoC (monoamine oxidase C) dehydratase regulatory
protein; and orthologs of MaoC, PaaZ and PaaN, which are
putative ring-opening enzymes of the aerobic
phenylacetic acid catabolic pathway.
Length = 442
Score = 64.6 bits (157), Expect = 3e-11
Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 12/161 (7%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAG-VPPGVV 256
G V + FNF L AL MG+ V+ KP + + +++ AG +PP V
Sbjct: 102 GPVLVIGAFNFPLWIPLLQLAGALAMGNPVIVKPHTAVSIVMQIMVRLLHYAGLLPPEDV 161
Query: 257 NFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGGKN 316
+ DG + P + FTGS +V + + + R+ E G N
Sbjct: 162 TLINGDGKT-MQALLLHPNPKMVLFTGSS--------RVAEKLALDAKQARIYLELAGFN 212
Query: 317 FHFIHASAN-VESVVNGTIRSAFEYCGQKCSACSRMYVPES 356
+ + A V+ V ++ GQKC+A S ++VPE+
Sbjct: 213 WKVLGPDAQAVDYVAWQCVQDMTACSGQKCTAQSMLFVPEN 253
>gnl|CDD|215259 PLN02466, PLN02466, aldehyde dehydrogenase family 2 member.
Length = 538
Score = 64.8 bits (158), Expect = 3e-11
Identities = 47/161 (29%), Positives = 77/161 (47%), Gaps = 6/161 (3%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 257
G + P+NF + PAL G++++ K ++ LS K++ EAG+PPGV+N
Sbjct: 197 GVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLSALYAAKLLHEAGLPPGVLN 256
Query: 258 FVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGGKNF 317
V GP G + + + + FTGS T ++ L++ N + E GGK+
Sbjct: 257 VVSGFGPTAGAALASHMDVDKLAFTGSTDT-GKIVLELAAK----SNLKPVTLELGGKSP 311
Query: 318 HFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
+ A+V+ V + F GQ C A SR +V E ++
Sbjct: 312 FIVCEDADVDKAVELAHFALFFNQGQCCCAGSRTFVHERVY 352
>gnl|CDD|215110 PLN00412, PLN00412, NADP-dependent glyceraldehyde-3-phosphate
dehydrogenase; Provisional.
Length = 496
Score = 63.6 bits (155), Expect = 7e-11
Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 199 GFVAAVSPFNFTAIGGNLAYT---PALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPG 254
G V A+ PFN+ NLA + PAL+ G++V+ KP ++ + AG P G
Sbjct: 160 GVVLAIPPFNYPV---NLAVSKIAPALIAGNAVVLKPPTQGAVAALHMVHCFHLAGFPKG 216
Query: 255 VVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGG 314
+++ V G GD +T P + I+FTG G I+ L E GG
Sbjct: 217 LISCVTGKGSEIGDFLTMHPGVNCISFTGG---------DTGIAISKKAGMVPLQMELGG 267
Query: 315 KNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESL 357
K+ + A+++ I+ F Y GQ+C+A + V ES+
Sbjct: 268 KDACIVLEDADLDLAAANIIKGGFSYSGQRCTAVKVVLVMESV 310
>gnl|CDD|143471 cd07559, ALDH_ACDHII_AcoD-like, Ralstonia eutrophus NAD+-dependent
acetaldehyde dehydrogenase II and Staphylococcus aureus
AldA1 (SACOL0154)-like. Included in this CD is the
NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII,
AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus
H16 involved in the catabolism of acetoin and ethanol,
and similar proteins, such as, the dimeric
dihydrolipoamide dehydrogenase of the acetoin
dehydrogenase enzyme system of Klebsiella pneumonia.
Also included are sequences similar to the
NAD+-dependent chloroacetaldehyde dehydrogenases (AldA
and AldB) of Xanthobacter autotrophicus GJ10 which are
involved in the degradation of 1,2-dichloroethane, as
well as, the uncharacterized aldehyde dehydrogenase from
Staphylococcus aureus (AldA1, locus SACOL0154) and other
similar sequences.
Length = 480
Score = 61.2 bits (149), Expect = 4e-10
Identities = 49/169 (28%), Positives = 74/169 (43%), Gaps = 19/169 (11%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 257
G V + P+NF + PAL G++V+ KP+ LS + ++ I +P GVVN
Sbjct: 138 GVVGQIIPWNFPLLMAAWKLAPALAAGNTVVLKPASQTPLSILVLMEL-IGDLLPKGVVN 196
Query: 258 FVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVY--KNFPRLIGECGGK 315
V G G + + P +A + FTGS VG+ I Y +N + E GGK
Sbjct: 197 VVTGFGSEAGKPLASHPRIAKLAFTGST--------TVGRLIMQYAAENLIPVTLELGGK 248
Query: 316 NFHFIHASANVES------VVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
+ + A G + AF G+ C+ SR V ES++
Sbjct: 249 SPNIFFDDAMDADDDFDDKAEEGQLGFAFNQ-GEVCTCPSRALVQESIY 296
>gnl|CDD|130783 TIGR01722, MMSDH, methylmalonic acid semialdehyde dehydrogenase.
Involved in valine catabolism,
methylmalonate-semialdehyde dehydrogenase catalyzes the
irreversible NAD+- and CoA-dependent oxidative
decarboxylation of methylmalonate semialdehyde to
propionyl-CoA. Methylmalonate-semialdehyde dehydrogenase
has been characterized in both prokaryotes and
eukaryotes, functioning as a mammalian tetramer and a
bacterial homodimer. Although similar in monomeric
molecular mass and enzymatic activity, the N-terminal
sequence in P.aeruginosa does not correspond with the
N-terminal sequence predicted for rat liver. Sequence
homology to a variety of prokaryotic and eukaryotic
aldehyde dehydrogenases places MMSDH in the aldehyde
dehydrogenase (NAD+) superfamily (pfam00171), making
MMSDH's CoA requirement unique among known ALDHs.
Methylmalonate semialdehyde dehydrogenase is closely
related to betaine aldehyde dehydrogenase,
2-hydroxymuconic semialdehyde dehydrogenase, and class 1
and 2 aldehyde dehydrogenase. In Bacillus, a highly
homologous protein to methylmalonic acid semialdehyde
dehydrogenase, groups out from the main MMSDH clade with
Listeria and Sulfolobus. This Bacillus protein has been
suggested to be located in an iol operon and/or involved
in myo-inositol catabolism, converting malonic
semialdehyde to acetyl CoA ad CO2. The preceeding
enzymes responsible for valine catabolism are present in
Bacillus, Listeria, and Sulfolobus [Energy metabolism,
Amino acids and amines].
Length = 477
Score = 61.1 bits (148), Expect = 4e-10
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 12/154 (7%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 257
G A ++PFNF A+ + A+ G++ + KPS+ + + ++ EAG P GV+N
Sbjct: 138 GVCAGITPFNFPAMIPLWMFPIAIACGNTFVLKPSEKVPSAAVKLAELFSEAGAPDGVLN 197
Query: 258 FVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNI--NVYKNFPRLIGECGGK 315
V D D + P + ++F GS P +G+ I + R+ G K
Sbjct: 198 VVHGD-KEAVDRLLEHPDVKAVSFVGSTP--------IGRYIHTTGSAHGKRVQALGGAK 248
Query: 316 NFHFIHASANVESVVNGTIRSAFEYCGQKCSACS 349
N + A+ ++ + + +A+ GQ+C A S
Sbjct: 249 NHMVVMPDADKDAAADALVGAAYGAAGQRCMAIS 282
>gnl|CDD|143466 cd07148, ALDH_RL0313, Uncharacterized ALDH ( RL0313) with
similarity to Tortula ruralis aldehyde dehydrogenase
ALDH21A1. Uncharacterized aldehyde dehydrogenase (locus
RL0313) with sequence similarity to the moss Tortula
ruralis aldehyde dehydrogenase ALDH21A1 (RNP123)
believed to play an important role in the detoxification
of aldehydes generated in response to desiccation- and
salinity-stress, and similar sequences are included in
this CD.
Length = 455
Score = 58.6 bits (142), Expect = 2e-09
Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 19/165 (11%)
Query: 199 GFVAAVSPFNFTAIGGNLA---YTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPG 254
G V A+S FN NL PA+ G V+ KP+ LS ++ EAG+P G
Sbjct: 126 GVVVAISAFNHPL---NLIVHQVAPAIAAGCPVIVKPALATPLSCLAFVDLLHEAGLPEG 182
Query: 255 VVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFP--RLIGEC 312
VP + V + + P +A +F GS VG + K P R E
Sbjct: 183 WCQAVPCENAV-AEKLVTDPRVAFFSFIGSAR--------VGWMLRS-KLAPGTRCALEH 232
Query: 313 GGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESL 357
GG + SA++++++ ++ F + GQ C + R++VP +
Sbjct: 233 GGAAPVIVDRSADLDAMIPPLVKGGFYHAGQVCVSVQRVFVPAEI 277
>gnl|CDD|212007 TIGR04284, aldehy_Rv0768, aldehyde dehydrogenase, Rv0768 family.
This family describes a branch of the aldehyde
dehydrogenase (NAD) family (see pfam00171) that includes
Rv0768 from Mycobacterium tuberculosis. All members of
this family belong to species predicted to synthesize
mycofactocin, suggesting that this enzyme or another
upstream or downstream in the same pathway might be
mycofactocin-dependent. However, the taxonomic range of
this family is not nearly broad enough to make that
relationship conclusive [Unknown function, Enzymes of
unknown specificity].
Length = 480
Score = 54.8 bits (132), Expect = 4e-08
Identities = 46/164 (28%), Positives = 76/164 (46%), Gaps = 16/164 (9%)
Query: 199 GFVAAVSPFNFT-AIGGNLAYT-PALM-GSSVLWKPS-DTALLSNYTIYKIMIEAGVPPG 254
G V A++P+NF I NLA PAL G++V+ KP+ DT + I PPG
Sbjct: 143 GVVGAITPWNFPHQI--NLAKLGPALAAGNTVVLKPAPDTPWCAAVLGELIAEHTDFPPG 200
Query: 255 VVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNI--NVYKNFPRLIGEC 312
VVN V + G + P + ++FTGS T G+ + + ++ E
Sbjct: 201 VVNIVTSSDHRLGALLAKDPRVDMVSFTGSTAT--------GRAVMADAAATLKKVFLEL 252
Query: 313 GGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPES 356
GGK+ + A++ + + + + GQ C+ +R+ VP +
Sbjct: 253 GGKSAFIVLDDADLAAACSMAAFTVCMHAGQGCAITTRLVVPRA 296
>gnl|CDD|143434 cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent
acetaldehyde dehydrogenase II-like. Included in this CD
is the NAD+-dependent, acetaldehyde dehydrogenase II
(AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes)
eutrophus H16 involved in the catabolism of acetoin and
ethanol, and similar proteins, such as, the dimeric
dihydrolipoamide dehydrogenase of the acetoin
dehydrogenase enzyme system of Klebsiella pneumonia.
Also included are sequences similar to the
NAD+-dependent chloroacetaldehyde dehydrogenases (AldA
and AldB) of Xanthobacter autotrophicus GJ10 which are
involved in the degradation of 1,2-dichloroethane. These
proteins apparently require RpoN factors for expression.
Length = 479
Score = 54.0 bits (130), Expect = 7e-08
Identities = 48/167 (28%), Positives = 74/167 (44%), Gaps = 15/167 (8%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 257
G V + P+NF + PAL G+ V+ KP++ S + ++ I +PPGVVN
Sbjct: 138 GVVGQIIPWNFPLLMATWKLAPALAAGNCVVLKPAEQTPASILVLMEL-IGDLLPPGVVN 196
Query: 258 FVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGGK-- 315
V G G + +S +A + FTG T RL +Q +N + E GGK
Sbjct: 197 VVNGFGLEAGKPLASSKRIAKVAFTGETTT-GRLIMQYAS-----ENIIPVTLELGGKSP 250
Query: 316 NFHF----IHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
N F A + + G + A G+ C+ SR + ES++
Sbjct: 251 NIFFADVMDADDAFFDKALEGFVMFALNQ-GEVCTCPSRALIQESIY 296
>gnl|CDD|166060 PLN02419, PLN02419, methylmalonate-semialdehyde dehydrogenase
[acylating].
Length = 604
Score = 52.8 bits (126), Expect = 2e-07
Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 14/155 (9%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 257
G A + PFNF A+ + A+ G++ + KPS+ ++ + ++ +EAG+P GV+N
Sbjct: 251 GVCAGICPFNFPAMIPLWMFPVAVTCGNTFILKPSEKDPGASVILAELAMEAGLPDGVLN 310
Query: 258 FVPADGPVFGDTITA---SPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGG 314
V DT+ A + ++F GS ++ + R+ G
Sbjct: 311 IVHGTN----DTVNAICDDEDIRAVSFVGSNTAGMHIYARAAAKGK------RIQSNMGA 360
Query: 315 KNFHFIHASANVESVVNGTIRSAFEYCGQKCSACS 349
KN + AN+++ +N + + F GQ+C A S
Sbjct: 361 KNHGLVLPDANIDATLNALLAAGFGAAGQRCMALS 395
>gnl|CDD|143416 cd07098, ALDH_F15-22, Aldehyde dehydrogenase family 15A1 and
22A1-like. Aldehyde dehydrogenase family members
ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1
(Arabidopsis thaliana, EC=1.2.1.3), and similar
sequences, are in this CD. Significant improvement of
stress tolerance in tobacco plants was observed by
overexpressing the ALDH22A1 gene from maize (Zea mays)
and was accompanied by a reduction of malondialdehyde
derived from cellular lipid peroxidation.
Length = 465
Score = 52.3 bits (126), Expect = 2e-07
Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 22/168 (13%)
Query: 199 GFVAAVSPFNF---TAIGGNLAYTPALM-GSSVLWKPSDTALLSN--YT--IYKIMIEAG 250
G V A+ +N+ +G AL G++++ K S+ S+ + I + + G
Sbjct: 122 GVVGAIVSWNYPFHNLLG---PIIAALFAGNAIVVKVSEQVAWSSGFFLSIIRECLAACG 178
Query: 251 VPPGVVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNI--NVYKNFPRL 308
P +V V + +T+ P + I F GS P VGK + ++ +
Sbjct: 179 HDPDLVQLVTCLPET-AEALTSHPVIDHITFIGSPP--------VGKKVMAAAAESLTPV 229
Query: 309 IGECGGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPES 356
+ E GGK+ + A+++ + + +R F+ GQ C R+ V E
Sbjct: 230 VLELGGKDPAIVLDDADLDQIASIIMRGTFQSSGQNCIGIERVIVHEK 277
>gnl|CDD|184426 PRK13968, PRK13968, putative succinate semialdehyde dehydrogenase;
Provisional.
Length = 462
Score = 50.6 bits (121), Expect = 9e-07
Identities = 38/160 (23%), Positives = 67/160 (41%), Gaps = 8/160 (5%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 257
G + A+ P+NF P L+ G+ L K + + I ++ +AG+P GV
Sbjct: 128 GTILAIMPWNFPLWQVMRGAVPILLAGNGYLLKHAPNVMGCAQLIAQVFKDAGIPQGVYG 187
Query: 258 FVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGGKNF 317
++ AD I +A + TGSV + Q G + + + E GG +
Sbjct: 188 WLNADNDGVSQMIN-DSRIAAVTVTGSVRAGAAIGAQAGAALK------KCVLELGGSDP 240
Query: 318 HFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESL 357
+ A++E V + ++ GQ C+A R + E +
Sbjct: 241 FIVLNDADLELAVKAAVAGRYQNTGQVCAAAKRFIIEEGI 280
>gnl|CDD|143418 cd07100, ALDH_SSADH1_GabD1, Mycobacterium tuberculosis
succinate-semialdehyde dehydrogenase 1-like.
Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1,
EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation
of succinate semialdehyde (SSA) to succinate. SSADH
activity in Mycobacterium tuberculosis (Mtb) is encoded
by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb
GabD1 SSADH1 reportedly is an enzyme of the
gamma-aminobutyrate shunt, which forms a functional link
between two TCA half-cycles by converting
alpha-ketoglutarate to succinate.
Length = 429
Score = 49.8 bits (120), Expect = 1e-06
Identities = 46/171 (26%), Positives = 71/171 (41%), Gaps = 30/171 (17%)
Query: 199 GFVAAVSPFNFT-------AIGGNLAYTPALM-GSSVLWKPSD----TALLSNYTIYKIM 246
G V + P+NF A P LM G++VL K + AL I ++
Sbjct: 98 GVVLGIMPWNFPFWQVFRFAA-------PNLMAGNTVLLKHASNVPGCALA----IEELF 146
Query: 247 IEAGVPPGVVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFP 306
EAG P GV + D + I A P + G+ TGS + + GKN+ K
Sbjct: 147 REAGFPEGVFQNLLIDSDQV-EAIIADPRVRGVTLTGSERAGRAVAAEAGKNL---K--- 199
Query: 307 RLIGECGGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESL 357
+ + E GG + + A+++ V ++ + GQ C A R V E +
Sbjct: 200 KSVLELGGSDPFIVLDDADLDKAVKTAVKGRLQNAGQSCIAAKRFIVHEDV 250
>gnl|CDD|177949 PLN02315, PLN02315, aldehyde dehydrogenase family 7 member.
Length = 508
Score = 49.1 bits (117), Expect = 3e-06
Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 12/165 (7%)
Query: 199 GFVAAVSPFNF-TAIGGNLAYTPALMGSSVLWKPSDTALLSNYTIYKIMIEA----GVPP 253
G V ++ FNF A+ G A + G+ V+WK + T L + K++ E +P
Sbjct: 156 GIVGVITAFNFPCAVLGWNACIALVCGNCVVWKGAPTTPLITIAMTKLVAEVLEKNNLPG 215
Query: 254 GVVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECG 313
+ G G+ I + ++FTGS +++ L V + +N F + + E
Sbjct: 216 AIFTSF-CGGAEIGEAIAKDTRIPLVSFTGS----SKVGLMVQQTVN--ARFGKCLLELS 268
Query: 314 GKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
G N + A+++ V + +A GQ+C+ C R+ + ES++
Sbjct: 269 GNNAIIVMDDADIQLAVRSVLFAAVGTAGQRCTTCRRLLLHESIY 313
>gnl|CDD|143444 cd07126, ALDH_F12_P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, ALDH family 12.
Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
EC=1.5.1.12), family 12: a proline catabolic enzyme of
the aldehyde dehydrogenase (ALDH) protein superfamily.
P5CDH is a mitochondrial enzyme involved in proline
degradation and catalyzes the NAD + -dependent
conversion of P5C to glutamate. The P5CDH, ALDH12A1
gene, in Arabidopsis, has been identified as an
osmotic-stress-inducible ALDH gene. This CD contains
both Viridiplantae and Alveolata P5CDH sequences.
Length = 489
Score = 44.0 bits (104), Expect = 1e-04
Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 12/159 (7%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 257
G VA ++PFNF L AL MG+ L K + +++ G+P V+
Sbjct: 144 GPVAIITPFNFPLEIPALQLMGALFMGNKPLLKVDSKVSVVMEQFLRLLHLCGMPATDVD 203
Query: 258 FVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGGKNF 317
+ +DGP + + FTGS RL L++ + + E G ++
Sbjct: 204 LIHSDGPTMNKILLEANPRM-TLFTGSSKVAERLALELHGKVKL---------EDAGFDW 253
Query: 318 HFIHAS-ANVESVVNGTIRSAFEYCGQKCSACSRMYVPE 355
+ ++V+ V + A+ GQKCSA S ++ E
Sbjct: 254 KILGPDVSDVDYVAWQCDQDAYACSGQKCSAQSILFAHE 292
>gnl|CDD|240392 PTZ00381, PTZ00381, aldehyde dehydrogenase family protein;
Provisional.
Length = 493
Score = 42.7 bits (101), Expect = 3e-04
Identities = 38/165 (23%), Positives = 64/165 (38%), Gaps = 20/165 (12%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPAL----MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPG 254
G V + +N+ NL P G++V+ KPS+ + ++ + K ++ + P
Sbjct: 111 GVVLVIGAWNYPL---NLTLIPLAGAIAAGNTVVLKPSELSPHTSKLMAK-LLTKYLDPS 166
Query: 255 VVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNIN--VYKNFPRLIGEC 312
V + V + P+ I FTGS +VGK + +N E
Sbjct: 167 YVRVIEGGVEV-TTELLKEPF-DHIFFTGSP--------RVGKLVMQAAAENLTPCTLEL 216
Query: 313 GGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESL 357
GGK+ + S N++ F GQ C A + V S+
Sbjct: 217 GGKSPVIVDKSCNLKVAARRIAWGKFLNAGQTCVAPDYVLVHRSI 261
>gnl|CDD|237016 PRK11903, PRK11903, aldehyde dehydrogenase; Provisional.
Length = 521
Score = 40.5 bits (95), Expect = 0.001
Identities = 45/160 (28%), Positives = 69/160 (43%), Gaps = 16/160 (10%)
Query: 207 FNFTAIGGNLAYTPALM-GSSVLWKP-SDTALLSNYTIYKIMIEAGV-PPGVVNFVPADG 263
FNF A G PAL+ G V+ KP + TA L+ + K ++ AG+ P G ++ V
Sbjct: 158 FNFPAWGLWEKAAPALLAGVPVIVKPATATAWLTQRMV-KDVVAAGILPAGALSVVCGSS 216
Query: 264 PVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGGKNFHFIHA- 322
D + ++ FTGS T L + V + R+ E N +
Sbjct: 217 AGLLDHLQPFDVVS---FTGSAETAAVLRS----HPAVVQRSVRVNVEADSLNSALLGPD 269
Query: 323 ----SANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
S + V +R GQKC+A R++VPE+L+
Sbjct: 270 AAPGSEAFDLFVKEVVREMTVKSGQKCTAIRRIFVPEALY 309
>gnl|CDD|143452 cd07134, ALDH_AlkH-like, Pseudomonas putida Aldehyde dehydrogenase
AlkH-like. Aldehyde dehydrogenase AlkH (locus name
P12693, EC=1.2.1.3) of the alkBFGHJKL operon that allows
Pseudomonas putida to metabolize alkanes and the
aldehyde dehydrogenase AldX of Bacillus subtilis (locus
P46329, EC=1.2.1.3), and similar sequences, are present
in this CD.
Length = 433
Score = 39.1 bits (92), Expect = 0.003
Identities = 48/170 (28%), Positives = 73/170 (42%), Gaps = 30/170 (17%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTP---ALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPG 254
G +SP+N+ NLA+ P A+ G++ + KPS+ ++ I KI+ EA
Sbjct: 102 GVCLIISPWNYPF---NLAFGPLVSAIAAGNTAILKPSELTPHTSAVIAKIIREA----- 153
Query: 255 VVNFVPADGPVF-GDTITASPYLA----GINFTGSVPTFNRLWLQVGKNI--NVYKNFPR 307
F + VF GD A L I FTGS P VGK + K+
Sbjct: 154 ---FDEDEVAVFEGDAEVAQALLELPFDHIFFTGS-PA-------VGKIVMAAAAKHLAS 202
Query: 308 LIGECGGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESL 357
+ E GGK+ + +A+++ F GQ C A ++V ES+
Sbjct: 203 VTLELGGKSPTIVDETADLKKAAKKIAWGKFLNAGQTCIAPDYVFVHESV 252
>gnl|CDD|131341 TIGR02288, PaaN_2, phenylacetic acid degradation protein paaN.
This enzyme is proposed to act in the ring-opening step
of phenylacetic acid degradation which follows ligation
of the acid with coenzyme A (by PaaF) and hydroxylation
by a multicomponent non-heme iron hydroxylase complex
(PaaGHIJK). Gene symbols have been standardized in. This
enzyme is related to aldehyde dehydrogenases and has a
domain which is a member of the pfam00171 family. This
family includes sequences from Burkholderia, Bordetella,
Streptomyces. Other PaaN enzymes are represented by a
separate model, TIGR02278.
Length = 551
Score = 37.2 bits (86), Expect = 0.018
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 17/138 (12%)
Query: 224 GSSVLWKPSDTALLSNYTIYKI----MIEAGVPPGVVNFV--PADGPVFGDTITASPYLA 277
G+ VL KP A+L ++ + EAG P +V + P +
Sbjct: 221 GNPVLVKPHPGAILPLALTVQVAREVLGEAGFDPNLVTLAAFDPGHEA-AQRLATDPAVR 279
Query: 278 GINFTGSVPTFNRLWL-QVGKNINVYKNFPRLIGECGGKNFHFIHASANVESVVNGTIRS 336
I+FTGS WL Q + VY E G N I ++ + ++++ S
Sbjct: 280 IIDFTGS--NAFGQWLEQNARQAQVYT-------EKAGVNTVIIESTDDYKAMLRNLAFS 330
Query: 337 AFEYCGQKCSACSRMYVP 354
Y GQ C+ + VP
Sbjct: 331 LSLYSGQMCTTTQAILVP 348
>gnl|CDD|143406 cd07087, ALDH_F3-13-14_CALDH-like, ALDH subfamily: Coniferyl
aldehyde dehydrogenase, ALDH families 3, 13, and 14, and
other related proteins. ALDH subfamily which includes
NAD(P)+-dependent, aldehyde dehydrogenase, family 3
member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and
fatty aldehyde dehydrogenase, family 3 member A2
(ALDH3A2, EC=1.2.1.3), and also plant ALDH family
members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14
(YMR110C) and the protozoan family 13 member (ALDH13),
as well as coniferyl aldehyde dehydrogenases (CALDH,
EC=1.2.1.68), and other similar sequences, such as the
Pseudomonas putida benzaldehyde dehydrogenase I that is
involved in the metabolism of mandelate.
Length = 426
Score = 34.8 bits (81), Expect = 0.076
Identities = 47/170 (27%), Positives = 67/170 (39%), Gaps = 30/170 (17%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTP---ALM-GSSVLWKPSDTA-----LLSNYTIYKIMIEA 249
G V + P+N+ LA P A+ G++V+ KPS+ A LL+ +I
Sbjct: 102 GVVLIIGPWNYPL---QLALAPLIGAIAAGNTVVLKPSELAPATSALLAK------LIPK 152
Query: 250 GVPPGVVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNIN--VYKNFPR 307
P V V V + A P+ I FTGS VGK + K+
Sbjct: 153 YFDPEAVAVVEGGVEVATA-LLAEPF-DHIFFTGSP--------AVGKIVMEAAAKHLTP 202
Query: 308 LIGECGGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESL 357
+ E GGK+ + AN+E F GQ C A + V ES+
Sbjct: 203 VTLELGGKSPCIVDKDANLEVAARRIAWGKFLNAGQTCIAPDYVLVHESI 252
>gnl|CDD|143445 cd07127, ALDH_PAD-PaaZ, Phenylacetic acid degradation proteins PaaZ
(Escherichia coli) and PaaN (Pseudomonas putida)-like.
Phenylacetic acid degradation (PAD) proteins PaaZ
(Escherichia coli) and PaaN (Pseudomonas putida) are
putative aromatic ring cleavage enzymes of the aerobic
PA catabolic pathway. PaaZ mutants were defective for
growth with PA as a sole carbon source due to
interruption of the putative ring opening system. This
CD is limited to bacterial monofunctional enzymes.
Length = 549
Score = 34.8 bits (80), Expect = 0.081
Identities = 53/224 (23%), Positives = 88/224 (39%), Gaps = 40/224 (17%)
Query: 144 RCLDDLKYAAGNYYINDKSTGSVVGQQPFGGGRMSALTFYLEVLASNLGRGEGLDGFVAA 203
R L+ + YA + + + ++P G A+ V+ RG L V
Sbjct: 152 RGLEAVAYA---WREMSRIPPTAEWEKPQGKHDPLAMEKTFTVV----PRGVAL---VIG 201
Query: 204 VSPF----NFTAIGGNLAYTPALMGSSVLWKPSDTALLSNYTIYKI----MIEAGVPPGV 255
S F + + +LA G+ V+ KP A+L ++ + EAG P +
Sbjct: 202 CSTFPTWNGYPGLFASLA-----TGNPVIVKPHPAAILPLAITVQVAREVLAEAGFDPNL 256
Query: 256 VNFVPADGPVFGDTITAS----PYLAGINFTGSVPTFNRLWL-QVGKNINVYKNFPRLIG 310
V AD P + I + P + I+FTGS F WL + VY
Sbjct: 257 VTLA-ADTP--EEPIAQTLATRPEVRIIDFTGS-NAFGD-WLEANARQAQVYT------- 304
Query: 311 ECGGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVP 354
E G N + ++ ++++++ S Y GQ C+ +YVP
Sbjct: 305 EKAGVNTVVVDSTDDLKAMLRNLAFSLSLYSGQMCTTPQNIYVP 348
>gnl|CDD|163655 cd07412, MPP_YhcR_N, Bacillus subtilis YhcR endonuclease and
related proteins, N-terminal metallophosphatase domain.
YhcR is a Bacillus subtilis sugar-nonspecific
endonuclease. It cleaves endonucleolytically to yield
nucleotide 3'-monophosphate products, similar to
Staphylococcus aureus micrococcal nuclease. YhcR appears
to be located in the cell wall, and is thought to be a
substrate for a Bacillus subtilis sortase. YhcR is the
major calcium-activated nuclease of B. subtilis. The
N-terminal metallophosphatase domain belongs to a large
superfamily of distantly related metallophosphatases
(MPPs) that includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). MPPs are functionally
diverse, but all share a conserved domain with an active
site consisting of two metal ions (usually manganese,
iron, or zinc) coordinated with octahedral geometry by a
cage of histidine, aspartate, and asparagine residues.
The conserved domain is a double beta-sheet sandwich
with a di-metal active site made up of residues located
at the C-terminal side of the sheets. This domain is
thought to allow for productive metal coordination.
Length = 288
Score = 34.2 bits (79), Expect = 0.10
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 11/70 (15%)
Query: 224 GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVNFVPADGP--VFGDTITASPYLAGINF 281
++V K + T L YTI + GV G + V D P V D + AG+ F
Sbjct: 123 AANVYDKGTGTPALPPYTIKDV---GGVKVGFIGAVTKDTPNLVSPDGV------AGLEF 173
Query: 282 TGSVPTFNRL 291
T V N +
Sbjct: 174 TDEVEAINAV 183
>gnl|CDD|227384 COG5051, RPL36A, Ribosomal protein L36E [Translation, ribosomal
structure and biogenesis].
Length = 97
Score = 31.5 bits (71), Expect = 0.18
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 12/71 (16%)
Query: 64 PIVIGSKEYKTEHVQYQPMVSLHVQYQPMPHNHKKKIAKFYYATPVLKSALDIVSSLCPY 123
+V+G + K + P P K +++K T ++S + ++ L PY
Sbjct: 6 GLVVGLNKGKKVTKRQPP---------ERPSRKKGQLSK---RTEFVRSIVREIAGLSPY 53
Query: 124 EKNSVGLLINT 134
E+ + L+ N+
Sbjct: 54 ERRVIELIRNS 64
>gnl|CDD|222228 pfam13567, DUF4131, Domain of unknown function (DUF4131). This
domain is frequently found to the N-terminus of the
Competence domain, pfam03772.
Length = 173
Score = 30.8 bits (70), Expect = 0.80
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 5/49 (10%)
Query: 365 LLLFLFSASVPVFCFCSCFLLLFLF-----STSVPVFCFCSCFLLLFLF 408
LL L S +P++ + LL L + LL L
Sbjct: 5 LLADLLSLPLPLWLLLALLALLLLLLLYRRKRRRTLLLLLLLLLLGGLG 53
>gnl|CDD|240660 cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydrogenase and
related dehydrogenases, NAD-binding and catalytic
domains. (R)-2-hydroxyglutarate dehydrogenase (HGDH)
catalyzes the NAD-dependent reduction of 2-oxoglutarate
to (R)-2-hydroxyglutarate. HGDH is a member of the
D-2-hydroxyacid NAD(+)-dependent dehydrogenase family;
these proteins typically have a characteristic
arrangement of 2 similar subdomains of the alpha/beta
Rossmann fold NAD+ binding form. The NAD+ binding domain
is inserted within the linear sequence of the mostly
N-terminal catalytic domain, which has a similar domain
structure to the internal NAD binding domain.
Structurally, these domains are connected by extended
alpha helices and create a cleft in which NAD is bound,
primarily to the C-terminal portion of the 2nd
(internal) domain.
Length = 330
Score = 31.5 bits (72), Expect = 0.83
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 89 YQPMPHNHKKKIAKFYYATPVLKSALDIVSSLCPYEKNSVGLLINTEVL 137
Y P + K + F +LK + DI+S PY K LIN E +
Sbjct: 174 YDIYPSDAAKDVVTFVSLDELLKKS-DIISLHVPYIKGKNDKLINKEFI 221
>gnl|CDD|221049 pfam11262, Tho2, Transcription factor/nuclear export subunit
protein 2. THO and TREX form a eukaryotic complex which
functions in messenger ribonucleoprotein metabolism and
plays a role in preventing the transcription-associated
genetic instability. Tho2, along with four other
subunits forms THO.
Length = 296
Score = 31.1 bits (71), Expect = 0.97
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 363 CFLLLFLFSASVPVFCFCSCFLLLFLFSTSVPVFCFCSCFLLLF 406
C L LFS + ++C + L P F S LF
Sbjct: 109 CILPRLLFSPADALYCA---KFVKLLHELGTPNFNTLSLLDRLF 149
>gnl|CDD|143453 cd07135, ALDH_F14-YMR110C, Saccharomyces cerevisiae aldehyde
dehydrogenase family 14 and related proteins. Aldehyde
dehydrogenase family 14 (ALDH14), isolated mainly from
the mitochondrial outer membrane of Saccharomyces
cerevisiae (YMR110C) and most closely related to the
plant and animal ALDHs and fatty ALDHs family 3 members,
and similar fungal sequences, are present in this CD.
Length = 436
Score = 31.0 bits (71), Expect = 1.1
Identities = 39/169 (23%), Positives = 65/169 (38%), Gaps = 30/169 (17%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPAL----MGSSVLWKPSD-----TALLSNYTIYKIMIEA 249
G V + P+N+ + LA +P + G +V+ KPS+ ALL+ ++
Sbjct: 110 GVVLIIGPWNYPVL---LALSPLVGAIAAGCTVVLKPSELTPHTAALLAE------LVPK 160
Query: 250 GVPPGVVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNI--NVYKNFPR 307
+ P V P + I +TGS +VG+ I K+
Sbjct: 161 YLDPDAFQVVQGGVPETTALLEQK--FDKIFYTGSG--------RVGRIIAEAAAKHLTP 210
Query: 308 LIGECGGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPES 356
+ E GGK+ + +A++E + F GQ C A + V S
Sbjct: 211 VTLELGGKSPVIVTKNADLELAAKRILWGKFGNAGQICVAPDYVLVDPS 259
>gnl|CDD|214413 MTH00062, ND4, NADH dehydrogenase subunit 4; Provisional.
Length = 417
Score = 30.3 bits (69), Expect = 2.1
Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 8/100 (8%)
Query: 328 SVVNGTIRSAFEYCGQKCSACSRMYVPESLFCFCSCFLLLFLFSASVPVFCFCSCFLLLF 387
S +NG++ S CS P ++ FC +FL S+S V F +
Sbjct: 316 SGINGSLVLRVIVVFSFLSLCS---FPPTIQFFCE----VFLVSSSFGVL-VYLLFWCFY 367
Query: 388 LFSTSVPVFCFCSCFLLLFLFSASVPVFCFCGNSAWYGLI 427
LF + L+ S+ V + L+
Sbjct: 368 LFFGGLVPLILLGHLLIRSESYESINVSNYSYLFFLIFLV 407
Score = 29.9 bits (68), Expect = 2.4
Identities = 23/80 (28%), Positives = 27/80 (33%), Gaps = 13/80 (16%)
Query: 340 YCGQKCSACSRMYVPESLFC-----FCSCFLLLFLFSASVPVFCFC-----SCFLLLFLF 389
G C V LF F L+LFL S +F FL L L
Sbjct: 23 SSGVGCCILVVNNVFNGLFIFDSLSFYLILLVLFLGLYSQVMFYNLLSGVSRFFLFLSLI 82
Query: 390 STSVPVFCFCSCFLLLFLFS 409
+ + CFC LLF F
Sbjct: 83 FS---ILCFCVNNSLLFWFF 99
>gnl|CDD|188131 TIGR01325, O_suc_HS_sulf, O-succinylhomoserine sulfhydrylase. This
model describes O-succinylhomoserine sulfhydrylase, one
of several related pyridoxal phosphate-dependent enzymes
of cysteine and methionine metabolism. This enzyme is
part of an alternative pathway of homocysteine
biosynthesis, a step in methionine biosynthesis [Amino
acid biosynthesis, Aspartate family].
Length = 381
Score = 29.8 bits (67), Expect = 3.1
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 16/81 (19%)
Query: 144 RCLDDLKYAAGNYYINDKSTGSVVGQQPFGGGR---MSALTFYLE----VLASN-LGRGE 195
+ +L +AAG + D + + QQP G + + T +++ VL LG E
Sbjct: 159 AAVAELAHAAGAKVVVDNVFATPLLQQPLKLGADVVVYSATKHIDGQGRVLGGAILGSEE 218
Query: 196 GLDGFVA--------AVSPFN 208
+D V A+SPFN
Sbjct: 219 YMDEPVQKLLRHTGPAMSPFN 239
>gnl|CDD|143454 cd07136, ALDH_YwdH-P39616, Bacillus subtilis aldehyde dehydrogenase
ywdH-like. Uncharacterized Bacillus subtilis ywdH
aldehyde dehydrogenase (locus P39616) most closely
related to the ALDHs and fatty ALDHs of families 3 and
14, and similar sequences, are included in this CD.
Length = 449
Score = 29.8 bits (68), Expect = 3.5
Identities = 37/142 (26%), Positives = 53/142 (37%), Gaps = 25/142 (17%)
Query: 224 GSSVLWKPSDTALLSNYT--IYKIMIEAGVPPGVVNFVPADGPVFGDTITASP--YLAGI 279
G++ + KPS+ L+ T + +IE V V + Y I
Sbjct: 128 GNTAVLKPSE---LTPNTSKVIAKIIEETFDEEYVAVVEGGVEE-NQELLDQKFDY---I 180
Query: 280 NFTGSVPTFNRLWLQVGKNINVYKNF-PRLIG---ECGGKNFHFIHASANVESVVNGTIR 335
FTGSV VGK I V + L E GGK+ + AN++ +
Sbjct: 181 FFTGSVR--------VGK-I-VMEAAAKHLTPVTLELGGKSPCIVDEDANLKLAAKRIVW 230
Query: 336 SAFEYCGQKCSACSRMYVPESL 357
F GQ C A + V ES+
Sbjct: 231 GKFLNAGQTCVAPDYVLVHESV 252
>gnl|CDD|143398 cd07079, ALDH_F18-19_ProA-GPR, Gamma-glutamyl phosphate reductase
(GPR), aldehyde dehydrogenase families 18 and 19.
Gamma-glutamyl phosphate reductase (GPR), a L-proline
biosynthetic pathway (PBP) enzyme that catalyzes the
NADPH dependent reduction of L-gamma-glutamyl
5-phosphate into L-glutamate 5-semialdehyde and
phosphate. The glutamate route of the PBP involves two
enzymatic steps catalyzed by gamma-glutamyl kinase (GK,
EC 2.7.2.11) and GPR (EC 1.2.1.41). These enzymes are
fused into the bifunctional enzyme, ProA or
delta(1)-pyrroline-5-carboxylate synthetase (P5CS) in
plants and animals, whereas they are separate enzymes in
bacteria and yeast. In humans, the P5CS (ALDH18A1), an
inner mitochondrial membrane enzyme, is essential to the
de novo synthesis of the amino acids proline and
arginine. Tomato (Lycopersicon esculentum) has both the
prokaryotic-like polycistronic operons encoding GK and
GPR (PRO1, ALDH19) and the full-length, bifunctional
P5CS (PRO2, ALDH18B1).
Length = 406
Score = 29.3 bits (67), Expect = 3.8
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 224 GSSVLWKPSDTALLSNYTIYKIM----IEAGVPPGVVNFVP 260
G++V+ + AL SN + +I+ EAG+P V +P
Sbjct: 135 GNAVILRGGSEALHSNRALVEIIQEALEEAGLPEDAVQLIP 175
>gnl|CDD|233714 TIGR02082, metH, 5-methyltetrahydrofolate--homocysteine
methyltransferase. This family represents
5-methyltetrahydrofolate--homocysteine methyltransferase
(EC 2.1.1.13), one of at least three different enzymes
able to convert homocysteine to methionine by
transferring a methyl group on to the sulfur atom. It is
also called the vitamin B12(or cobalamine)-dependent
methionine synthase. Other methionine synthases include
5-methyltetrahydropteroyltriglutamate--homocysteine
S-methyltransferase (MetE, EC 2.1.1.14, the
cobalamin-independent methionine synthase) and
betaine-homocysteine methyltransferase [Amino acid
biosynthesis, Aspartate family].
Length = 1178
Score = 29.4 bits (66), Expect = 4.6
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 7/60 (11%)
Query: 194 GEGLDGFVAAVSPFNFTAIGGNLAYTPALMGSSVLWKPSDTALLSNYTIY-KIMIEAGVP 252
G+ ++ F+ ++ IG N A P M +P L + Y AG+P
Sbjct: 212 GQTIEAFLTSLEHAGIDMIGLNCALGPDEM------RPHLKHLSEHAEAYVSCHPNAGLP 265
>gnl|CDD|225105 COG2194, COG2194, Predicted membrane-associated, metal-dependent
hydrolase [General function prediction only].
Length = 555
Score = 29.3 bits (66), Expect = 4.9
Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 10/73 (13%)
Query: 361 CSCFLLLFLFSASVPVFCFCSCFLLLFL-------FSTSVPVFCFCSCFLLLFLFSASV- 412
+ L L + + + FL +FL FS S + + LLL L S
Sbjct: 10 LTKLSLSLLLAWYFLLLLNFAFFLQVFLINSLDLSFSFSFLLALVFAFLLLLLLLSFPRL 69
Query: 413 --PVFCFCGNSAW 423
P+ +
Sbjct: 70 LKPLAGVLSLVSA 82
>gnl|CDD|205486 pfam13306, LRR_5, Leucine rich repeats (6 copies). This family
includes a number of leucine rich repeats. This family
contains a large number of BSPA-like surface antigens
from Trichomonas vaginalis.
Length = 128
Score = 27.9 bits (63), Expect = 5.1
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Query: 331 NGTIRSAFEYCGQKCSACSRMYVPESL-----FCFCSCFLLLFLFSASVPVF---CFCSC 382
++ S EY CS+ + + +P +L + F +C L +SV F +C
Sbjct: 65 PSSLTSIGEYAFSNCSSLTSITIPSNLTTIGSYAFSNCSLKSITIPSSVTTIGDYAFSNC 124
Query: 383 FLL 385
L
Sbjct: 125 SSL 127
>gnl|CDD|131155 TIGR02100, glgX_debranch, glycogen debranching enzyme GlgX. This
family consists of the GlgX protein from the E. coli
glycogen operon and probable equivalogs from other
prokaryotic species. GlgX is not required for glycogen
biosynthesis, but instead acts as a debranching enzyme
for glycogen catabolism. This model distinguishes GlgX
from pullanases and other related proteins that also
operate on alpha-1,6-glycosidic linkages. In the wide
band between the trusted and noise cutoffs are
functionally similar enzymes, mostly from plants, that
act similarly but usually are termed isoamylase [Energy
metabolism, Biosynthesis and degradation of
polysaccharides].
Length = 688
Score = 28.9 bits (65), Expect = 6.5
Identities = 30/92 (32%), Positives = 40/92 (43%), Gaps = 28/92 (30%)
Query: 141 LYFRCLDDLKY---AAGN--YYINDKSTGSVVG-QQPFGGGR-----MSALTFYLEV--- 186
L FR +D+ Y + YYIND TG+ + P R M +L +++
Sbjct: 280 LSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHP----RVLQMVMDSLRYWVTEMHV 335
Query: 187 ------LASNLGRGEGLDGFVAAVSPFNFTAI 212
LA+ LGR L GF S F FTAI
Sbjct: 336 DGFRFDLATTLGR--ELYGFDML-SGF-FTAI 363
>gnl|CDD|214414 MTH00063, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 522
Score = 28.7 bits (65), Expect = 7.2
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 359 CFCSCFLLLFLFSASVPVFCFCSC-FLLLFLFSTSVPVFCFCSCFLLLFLF 408
S + F++ + VF + + + L V + F S LLL
Sbjct: 381 SSLSSGVRFLFFNSGLMVFLWLFINYYVFLLLDEVVYLGVFISLVLLLVQL 431
>gnl|CDD|236119 PRK07865, PRK07865, N-succinyldiaminopimelate aminotransferase;
Reviewed.
Length = 364
Score = 28.3 bits (64), Expect = 7.6
Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 46 REAITAALKR----VGSTVEEVPIVIGSKE 71
REAI L R G V VIGSKE
Sbjct: 68 REAIVGWLARRRGVTGLDPAAVLPVIGSKE 97
>gnl|CDD|213996 cd12112, PHP_HisPPase_Chlorobi_like, Polymerase and Histidinol
Phosphatase domain of Chlorobi like. The PHP (also
called histidinol phosphatase-2/HIS2) domain is
associated with several types of DNA polymerases, such
as PolIIIA and family X DNA polymerases, stand alone
histidinol phosphate phosphatases (HisPPases), and a
number of uncharacterized protein families. Chlorobi PHP
is uncharacterized protein. HisPPase catalyzes the
eighth step of histidine biosynthesis, in which
L-histidinol phosphate undergoes dephosphorylation to
produce histidinol. The HisPPase can be classified into
two types: the bifunctional Hisppase found in
proteobacteria that belongs to the DDDD superfamily and
the monofunctional Bacillus subtilis type that is a
member of the PHP family. The PHP domain has four
conserved sequence motifs and contains an invariant
histidine that is involved in metal ion coordination.
The PHP domain of HisPPase is structurally homologous to
other members of the PHP family that have a distorted
(beta/alpha)7 barrel fold with a trinuclear metal site
on the C-terminal side of the barrel.
Length = 235
Score = 28.1 bits (63), Expect = 7.8
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
Query: 74 TEHVQYQPMVSLHVQYQPMP-HNHKKKIAK 102
TEH++Y+P H + P P N KIAK
Sbjct: 48 TEHIEYRP----HKEDIPHPDRNRSYKIAK 73
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.140 0.445
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,820,319
Number of extensions: 2139626
Number of successful extensions: 3492
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3174
Number of HSP's successfully gapped: 254
Length of query: 428
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 328
Effective length of database: 6,502,202
Effective search space: 2132722256
Effective search space used: 2132722256
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (26.8 bits)