RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1960
(428 letters)
>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino
acid metabolism, proline inhibition, oxidoreductase;
HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A*
3v9j_A* 3v9g_A 3v9h_A 3v9i_A
Length = 563
Score = 303 bits (779), Expect = 3e-98
Identities = 116/162 (71%), Positives = 144/162 (88%)
Query: 196 GLDGFVAAVSPFNFTAIGGNLAYTPALMGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGV 255
GL+GFVAA+SPFNFTAIGGNLA PALMG+ VLWKPSDTA+L++Y +Y+I+ EAG+PP +
Sbjct: 199 GLEGFVAAISPFNFTAIGGNLAGAPALMGNVVLWKPSDTAMLASYAVYRILREAGLPPNI 258
Query: 256 VNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGGK 315
+ FVPADGP FGDT+T+S +L GINFTGSVPTF LW QV +N++ ++ FPRL GECGGK
Sbjct: 259 IQFVPADGPTFGDTVTSSEHLCGINFTGSVPTFKHLWRQVAQNLDRFRTFPRLAGECGGK 318
Query: 316 NFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESL 357
NFHF+H+SA+V+SVV+GT+RSAFEY GQKCSACSR+YVP+SL
Sbjct: 319 NFHFVHSSADVDSVVSGTLRSAFEYGGQKCSACSRLYVPKSL 360
Score = 74.6 bits (184), Expect = 1e-14
Identities = 32/72 (44%), Positives = 38/72 (52%), Gaps = 11/72 (15%)
Query: 110 LKSALDIVSSLCPYEKNSVGLLINTEVLH---DDLYFRCLDDLKYAAGNYYINDKSTGSV 166
+ L +V S Y GL T + + L+ AAGN+YINDKSTGSV
Sbjct: 463 YRETLKLVDSTTSY-----GL---TGAVFAQDKAIVQEATRMLRNAAGNFYINDKSTGSV 514
Query: 167 VGQQPFGGGRMS 178
VGQQPFGG R S
Sbjct: 515 VGQQPFGGARAS 526
Score = 68.4 bits (168), Expect = 1e-12
Identities = 30/82 (36%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 35 PEWTYLPGSKEREAITAALKRVGSTVEEVPIVIGSKEYKTEHVQYQPMVSLHVQYQPMPH 94
P + GS ER+A+ ALK + E +P V+G +E T +QYQ P
Sbjct: 36 PILAFSQGSPERDALQKALKDLKGQTEAIPCVVGDEEVWTS----------DIQYQLSPF 85
Query: 95 NHKKKIAKFYYATPVL-KSALD 115
NH K+AKF YA L A+D
Sbjct: 86 NHAHKVAKFCYADKALLNRAID 107
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox
control, apoptosis, NAD binding, oxidoreductase,
PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Length = 538
Score = 212 bits (542), Expect = 2e-63
Identities = 77/354 (21%), Positives = 131/354 (37%), Gaps = 61/354 (17%)
Query: 35 PEWTYLPGSKEREAITAALKRVGSTV-EEVPIVIGSKEYKTEHVQYQPMVSLHVQYQPMP 93
P + + R+A AL V + +E P++I + TE + P
Sbjct: 10 PFTDFTVEA-NRKAFEEALGLVEKELGKEYPLIINGERVTTE--DKIQSWN--------P 58
Query: 94 HNHKKKIAKFYYATPVL--------KSALDIVSSLCPYEKNSV------------GLLIN 133
+ + A L A ++ P E+ ++
Sbjct: 59 ARKDQLVGSVSKANQDLAEKAIQSADEAFQTWRNVNPEERANILVKAAAIIRRRKHEFSA 118
Query: 134 TEVL---------HDDLYFRCLDDLKYAAGNYYINDKSTGSVVGQQPFGGGRMSALTFYL 184
V D +D L+Y A + + G++ FY
Sbjct: 119 WLVHEAGKPWKEADADTA-EAIDFLEYYAR--QM-IELNR---GKEILSRPGEQNRYFY- 170
Query: 185 EVLASNLGRGEGLDGFVAAVSPFNFT-AIGGNLAYTPALMGSSVLWKPSDTALLSNYTIY 243
+ G +SP+NF AI A P + G++V+ KP+ T +
Sbjct: 171 ----------TPM-GVTVTISPWNFALAIMVGTAVAPIVTGNTVVLKPASTTPVVAAKFV 219
Query: 244 KIMIEAGVPPGVVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYK 303
+++ +AG+P GV+N+VP G GD + P + I FTGS RL+ +
Sbjct: 220 EVLEDAGLPKGVINYVPGSGAEVGDYLVDHPKTSLITFTGSKDVGVRLYERAAVVRPGQN 279
Query: 304 NFPRLIGECGGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESL 357
+ R+I E GGK+ + A+++ + SAF + GQKCSA SR + + +
Sbjct: 280 HLKRVIVEMGGKDTVVVDRDADLDLAAESILVSAFGFSGQKCSAGSRAVIHKDV 333
Score = 56.1 bits (136), Expect = 1e-08
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 10/44 (22%)
Query: 153 AGNYYINDKSTGSVVGQQPFGGGRMS----------ALTFYLEV 186
GN Y N TG++VG PFGG +MS L +++
Sbjct: 466 VGNLYFNRNCTGAIVGYHPFGGFKMSGTDSKAGGPDYLALHMQA 509
>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase;
proline utilization A, PUTA, flavoenzyme, structural
genomic biology; HET: FAD MES; 2.20A {Geobacter
sulfurreducens}
Length = 1026
Score = 159 bits (403), Expect = 2e-42
Identities = 59/161 (36%), Positives = 90/161 (55%), Gaps = 5/161 (3%)
Query: 199 GFVAAVSPFNF-TAI-GGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGV 255
G A ++P+NF AI G + A++ G+ V++KPS + + + ++ EAG+P GV
Sbjct: 668 GVAAVIAPWNFPLAISMGMAS--AAIVTGNCVVFKPSGITSIIGWHLVELFREAGLPEGV 725
Query: 256 VNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGGK 315
NF P G V GD + P ++ I FTGS+ T R+ + K N ++I E GGK
Sbjct: 726 FNFTPGRGSVMGDYLVDHPDISLIAFTGSMETGLRIIERAAKVHPGQANVKKIISEMGGK 785
Query: 316 NFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPES 356
N I A+++ V + SAF + GQKCSACSR+ V ++
Sbjct: 786 NAIIIDDDADLDEAVPHVLYSAFGFQGQKCSACSRVIVLDA 826
Score = 50.0 bits (120), Expect = 1e-06
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 10/44 (22%)
Query: 153 AGNYYINDKSTGSVVGQQPFGGGRMS----------ALTFYLEV 186
GN YIN +TG++V +QPFGG RMS L +++
Sbjct: 960 VGNLYINRNNTGALVERQPFGGARMSGVGTKAGGPDYLLHFMDP 1003
>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 1.4A {Thermus thermophilus} SCOP:
c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A*
2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A
2iy6_A* 2j40_A* 2j5n_A*
Length = 516
Score = 150 bits (380), Expect = 2e-40
Identities = 53/161 (32%), Positives = 86/161 (53%), Gaps = 5/161 (3%)
Query: 199 GFVAAVSPFNF-TAI-GGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGV 255
G ++P+NF AI G + + G++V+ KP++ A++ +++I EAG PPGV
Sbjct: 175 GAGVVIAPWNFPVAIFTGMIV--GPVAVGNTVIAKPAEDAVVVGAKVFEIFHEAGFPPGV 232
Query: 256 VNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGGK 315
VNF+P G G + P + INFTGS+ +++ G+ F R E GGK
Sbjct: 233 VNFLPGVGEEVGAYLVEHPRIRFINFTGSLEVGLKIYEAAGRLAPGQTWFKRAYVETGGK 292
Query: 316 NFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPES 356
N + +A+ + G + SA+ + GQKCSA SR+ + +
Sbjct: 293 NAIIVDETADFDLAAEGVVVSAYGFQGQKCSAASRLILTQG 333
Score = 50.3 bits (121), Expect = 7e-07
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 10/44 (22%)
Query: 153 AGNYYINDKSTGSVVGQQPFGGGRMS----------ALTFYLEV 186
GN Y N K TG++VG QPFGG ++S L +LE+
Sbjct: 466 VGNLYFNRKITGALVGVQPFGGFKLSGTNAKTGALDYLRLFLEM 509
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme,
1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase;
HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Length = 1001
Score = 141 bits (358), Expect = 1e-36
Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 5/159 (3%)
Query: 199 GFVAAVSPFNF-TAIGGNLAYTPALMGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 257
G A+SP+NF AI + G+SV+ KP++ ++ EAG+P +
Sbjct: 651 GVFVAISPWNFPLAIFLGQVTAALMAGNSVVAKPAEQTPRIAREAVALLHEAGIPKSALY 710
Query: 258 FVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGGKNF 317
V DG + G +TA P +AG+ FTGS + + LI E GG N
Sbjct: 711 LVTGDGRI-GAALTAHPDIAGVVFTGSTEVARSINRALAAKDGPIV---PLIAETGGINA 766
Query: 318 HFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPES 356
A+A E V + + SAF GQ+CSA ++V E
Sbjct: 767 MIADATALPEQVADDVVTSAFRSAGQRCSALRLLFVQED 805
Score = 55.5 bits (134), Expect = 2e-08
Identities = 25/76 (32%), Positives = 30/76 (39%), Gaps = 20/76 (26%)
Query: 153 AGNYYINDKSTGSVVGQQPFGGGRMSALTFYLEVLASNLGRGEG----LDGFVAAVSPF- 207
GN Y+N G+VVG QPFGG +S G G L F +
Sbjct: 937 VGNIYVNRNMIGAVVGVQPFGGNGLSG-----------TGPKAGGPHYLARFATEQTVTI 985
Query: 208 NFTAIGGNLAYTPALM 223
N A GGN AL+
Sbjct: 986 NTAAAGGN----AALL 997
>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural
genomics, protein structure initiative, dehydroge
PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*
Length = 505
Score = 118 bits (298), Expect = 3e-29
Identities = 50/165 (30%), Positives = 83/165 (50%), Gaps = 17/165 (10%)
Query: 199 GFVAAVSPFNFTAIGGNLAYT----PALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPP 253
G V A+SPFN+ NLA PAL+ G++V++KP+ LS + + + +AG P
Sbjct: 154 GVVLAISPFNYPV---NLA-AAKIAPALVTGNTVVFKPATQGSLSGIKMVEALADAGAPE 209
Query: 254 GVVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECG 313
G++ V G V GD + P + I FTG G+ I+ ++ E G
Sbjct: 210 GIIQVVTGRGSVIGDHLVEHPGIDMITFTGGTT--------TGERISEKAKMIPVVLELG 261
Query: 314 GKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
GK+ + A+++ + + AF Y GQ+C+A R++V +S+
Sbjct: 262 GKDPAIVLDDADLKLTASQIVSGAFSYSGQRCTAIKRVFVQDSVA 306
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate
dehydrogenase; oxidoreductase; 1.82A {Streptococcus
mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A*
2qe0_A* 2esd_A* 1qi1_A*
Length = 475
Score = 117 bits (296), Expect = 4e-29
Identities = 54/165 (32%), Positives = 78/165 (47%), Gaps = 17/165 (10%)
Query: 199 GFVAAVSPFNFTAIGGNLAYT----PALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPP 253
G V A+SPFN+ NLA PAL+ G+ + +KP +S + + EAG+P
Sbjct: 145 GLVLAISPFNYPV---NLA-GSKIAPALIAGNVIAFKPPTQGSISGLLLAEAFAEAGLPA 200
Query: 254 GVVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECG 313
GV N + G GD I + INFTGS +G+ I ++ E G
Sbjct: 201 GVFNTITGRGSEIGDYIVEHQAVNFINFTGSTG--------IGERIGKMAGMRPIMLELG 252
Query: 314 GKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
GK+ + A++E I AF Y GQ+C+A R+ V ES+
Sbjct: 253 GKDSAIVLEDADLELTAKNIIAGAFGYSGQRCTAVKRVLVMESVA 297
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
NAD; 1.82A {Pseudomonas aeruginosa}
Length = 490
Score = 114 bits (289), Expect = 4e-28
Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 17/166 (10%)
Query: 199 GFVAAVSPFNFTA--IGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGV 255
G VA P+NF G++ PAL G+ V++KPS+ K I+AG+P GV
Sbjct: 141 GVVAVFGPYNFPGHLPNGHIV--PALLAGNCVVFKPSELTPKVAELTLKAWIQAGLPAGV 198
Query: 256 VNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVY---KNFPRLIGEC 312
+N V G + A L G+ FTGS G ++ + L E
Sbjct: 199 LNLVQGGRET-GVALAAHRGLDGLFFTGSSR--------TGNLLHSQFGGQPQKILALEM 249
Query: 313 GGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
GG N + A++++ V I+SAF GQ+C+ R+ VP+ +
Sbjct: 250 GGNNPLVVEEVADLDAAVYTIIQSAFISAGQRCTCARRLLVPQGAW 295
>3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.57A {Corynebacterium glutamicum}
Length = 508
Score = 114 bits (287), Expect = 7e-28
Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 14/166 (8%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPAL-MGSSVLWKPS-DTALLSNYTIYKIMIEAGVPPGVV 256
G V +SP+NF + PAL +G++V+ KP+ DT + +I EAGVP GV+
Sbjct: 150 GVVGVISPWNFPLNLSIRSVAPALAVGNAVVIKPASDTPVTGGVIPARIFEEAGVPAGVI 209
Query: 257 NFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNI----NVYKNFPRLIGEC 312
+ V G GD I+FTGS P VG+ + + E
Sbjct: 210 STVAGAGSEIGDHFVTHAVPKLISFTGSTP--------VGRRVGELAINGGPMKTVALEL 261
Query: 313 GGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
GG + A A++++ AF + GQ C + +R+ V ++
Sbjct: 262 GGNAPFVVLADADIDAAAQAAAVGAFLHQGQICMSINRVIVDAAVH 307
>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE; 2.40A {Staphylococcus aureus}
Length = 478
Score = 110 bits (277), Expect = 2e-26
Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 15/165 (9%)
Query: 199 GFVAAVSPFNF--TAIGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGV 255
G ++P+NF LA A GS V+ KPS+ + + +I + GVP GV
Sbjct: 141 GVSGLITPWNFPTNQTSLKLA--AAFAAGSPVVLKPSEETPFAAVILAEIFDKVGVPKGV 198
Query: 256 VNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNI--NVYKNFPRLIGECG 313
N V DG G+ ++ P + ++FTGS G I K+F ++ E G
Sbjct: 199 FNLVNGDGAGVGNPLSEHPKVRMMSFTGSG--------PTGSKIMEKAAKDFKKVSLELG 250
Query: 314 GKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
GK+ + + +++ T GQ C+A +R+ VP +
Sbjct: 251 GKSPYIVLDDVDIKEAAKATTGKVVNNTGQVCTAGTRVLVPNKIK 295
>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH,
glucose 1-phosphate, glycolysis, regulation, catatysis,
oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax}
SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A*
1uxu_A* 1uxv_A* 1ky8_A*
Length = 501
Score = 109 bits (274), Expect = 4e-26
Identities = 40/164 (24%), Positives = 73/164 (44%), Gaps = 16/164 (9%)
Query: 199 GFVAAVSPFNFTAIGGNLA---YTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPG 254
G VAA++PFN+ A T + + G++V+ KPS + L K +++AG PP
Sbjct: 159 GVVAAITPFNYPL---FDAVNKITYSFIYGNAVVVKPSISDPLPAAMAVKALLDAGFPPD 215
Query: 255 VVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGG 314
+ + G + I A +A ++FTGS VG+ + + + E GG
Sbjct: 216 AIALLNLPGKE-AEKIVADDRVAAVSFTGSTE--------VGERVVKVGGVKQYVMELGG 266
Query: 315 KNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
+ + A+++ + R + Y GQ+C A + ++
Sbjct: 267 GDPAIVLEDADLDLAADKIARGIYSYAGQRCDAIKLVLAERPVY 310
>2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP,
nucleotide-binding; HET: NAP; 1.40A {Burkholderia
xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A*
Length = 534
Score = 106 bits (268), Expect = 3e-25
Identities = 38/173 (21%), Positives = 66/173 (38%), Gaps = 26/173 (15%)
Query: 199 GFVAAVSPFNFTAIGGN--LAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGV-PPG 254
G ++ FNF + G A PAL+ G V+ KP+ + +++AG+ PPG
Sbjct: 153 GVALFINAFNFPSWGLWEKAA--PALLSGVPVIVKPATATAWLTQRMVADVVDAGILPPG 210
Query: 255 VVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNI----NVYKNFPRLIG 310
++ + + ++FTGS T + + RL
Sbjct: 211 ALSIICGSS---AGLLDQIRSFDVVSFTGSADT--------AATLRAHPAFVQRGARLNV 259
Query: 311 ECGGKNFHFIHASANVESV-----VNGTIRSAFEYCGQKCSACSRMYVPESLF 358
+ N + A A ++ + +R GQKC+A R +VPE+
Sbjct: 260 QADSLNSAILCADATPDTPAFDLFIKEVVREMTVKSGQKCTAIRRAFVPEAAL 312
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc,
structural genomics, NEW YORK structura genomics
research consortium, tetramer; 2.00A {Sinorhizobium
meliloti}
Length = 528
Score = 106 bits (268), Expect = 3e-25
Identities = 50/231 (21%), Positives = 87/231 (37%), Gaps = 42/231 (18%)
Query: 141 LYFRCLDDLKYAAGN--YY--INDKSTGSVVGQQPFGGGRMSALTFYLEVLASNLGRGEG 196
+ ++ + A Y G G L E
Sbjct: 116 PIAQARGEIGFCADLWSYAAGQARALEGQTH---NNIGDDRLGLV-----------LREP 161
Query: 197 LDGFVAAVSPFNF----TA--IGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEA 249
+ G V ++P+NF + + A+ G +V+ KPS+ ++ + ++ EA
Sbjct: 162 V-GVVGIITPWNFPFIIASERVP------WAIGSGCTVVLKPSEFTSGTSIRLAELAREA 214
Query: 250 GVPPGVVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVY--KNFPR 307
G+P GV N V G G + P + + FTGSV +VG + + R
Sbjct: 215 GIPDGVFNVVTGYGDPAGQVLAEDPNVDMVAFTGSV--------RVGTKLGEIAARTVKR 266
Query: 308 LIGECGGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
+ E GGK + A A++++ +G + GQ C + SR+ V E +
Sbjct: 267 VGLELGGKGPQIVFADADLDAAADGIAYGVYHNAGQCCISGSRLLVQEGIR 317
>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase,
oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo
sapiens} PDB: 2jg7_A*
Length = 500
Score = 106 bits (267), Expect = 4e-25
Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 20/167 (11%)
Query: 199 GFVAAVSPFNFTA--IGGNLAYTPALM-GSSVLWKPSD----TALLSNYTIYKIMIEAGV 251
G V ++ FNF G N A A++ G+ LWK + ++ I K++ + +
Sbjct: 159 GLVGIITAFNFPVAVYGWNNA--IAMICGNVCLWKGAPTTSLISVAVTKIIAKVLEDNKL 216
Query: 252 PPGVVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNI--NVYKNFPRLI 309
P + + + G + + ++FTGS VGK + V + F R +
Sbjct: 217 PGAICSLTCGGADI-GTAMAKDERVNLLSFTGSTQ--------VGKQVGLMVQERFGRSL 267
Query: 310 GECGGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPES 356
E GG N A++ VV + +A GQ+C+ R+++ ES
Sbjct: 268 LELGGNNAIIAFEDADLSLVVPSALFAAVGTAGQRCTTARRLFIHES 314
>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure
initiative, nysgrc, P biology, oxidoreductase; 1.50A
{Methanocaldococcus jannaschii} PDB: 3rhd_A*
Length = 486
Score = 106 bits (266), Expect = 4e-25
Identities = 53/171 (30%), Positives = 77/171 (45%), Gaps = 25/171 (14%)
Query: 199 GFVAAVSPFNFTA------IGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEA-- 249
G V A++PFNF I PA+ G+ ++ PS A L + KI+ A
Sbjct: 132 GIVGAITPFNFPLNLSAHKIA------PAIATGNVIVHHPSSKAPLVCIELAKIIENALK 185
Query: 250 --GVPPGVVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPR 307
VP GV N + G V GD I + + I+FTGS VG+ I F +
Sbjct: 186 KYNVPLGVYNLLTGAGEVVGDEIVVNEKVNMISFTGSSK--------VGELITKKAGFKK 237
Query: 308 LIGECGGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
+ E GG N + + A++ VN I+ +F Y GQ C + + V ES+
Sbjct: 238 IALELGGVNPNIVLKDADLNKAVNALIKGSFIYAGQVCISVGMILVDESIA 288
>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.00A {Bartonella henselae}
Length = 497
Score = 105 bits (265), Expect = 6e-25
Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 16/165 (9%)
Query: 199 GFVAAVSPFNF--TAIGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGV 255
G V ++P+N+ + + PAL G +++ KPS+ A LS +I+ EA +P GV
Sbjct: 163 GVVGLITPWNWPMNQVTLKVI--PALLAGCTMVLKPSEIAPLSAMLFAEILDEAALPSGV 220
Query: 256 VNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNI--NVYKNFPRLIGECG 313
N + DG G ++A P L I+FTGS + GK+I N R+ E G
Sbjct: 221 FNLINGDGANVGSYLSAHPDLEMISFTGST--------RAGKDISKNASNTLKRVCLELG 272
Query: 314 GKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
GK + I A A+++++ G +R F GQ C+A +RM V ++++
Sbjct: 273 GKGANIIFADADIDALQRG-VRHCFYNSGQSCNAPTRMLVEQAIY 316
>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics,
protein structure initiative, nysgrc, P biology; 2.50A
{Bacillus subtilis}
Length = 485
Score = 103 bits (259), Expect = 3e-24
Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 12/163 (7%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPAL-MGSSVLWKPS-DTALLSNYTIYKIMIEAGVPPGVV 256
G ++++SPFNF + PA+ +G+SV+ KP TA+ I K AG+P GV+
Sbjct: 145 GVISSISPFNFPMNLSMRSIAPAIALGNSVVHKPDIQTAISGGTIIAKAFEHAGLPAGVL 204
Query: 257 NFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNI--NVYKNFPRLIGECGG 314
N + D GD + +P I+FTGS VG++I + F R+ E GG
Sbjct: 205 NVMLTDVKEIGDGMLTNPIPRLISFTGSTA--------VGRHIGEIAGRAFKRMALELGG 256
Query: 315 KNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESL 357
N + + A+V+ V+ I F + GQ C +R+ V + +
Sbjct: 257 NNPFAVLSDADVDRAVDAAIFGKFIHQGQICMIINRIIVHQDV 299
>1ez0_A ALDH, aldehyde dehydrogenase; nucleotide binding domain, NADP+,
oxidoreductase; HET: NAP; 2.10A {Vibrio harveyi} SCOP:
c.82.1.1 PDB: 1eyy_A*
Length = 510
Score = 103 bits (259), Expect = 4e-24
Identities = 37/171 (21%), Positives = 64/171 (37%), Gaps = 17/171 (9%)
Query: 199 GFVAAVSPFNF----TAIGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEA---- 249
G VA NF +A GG+ A AL G V+ K ++ + + + +A
Sbjct: 138 GPVAVFGASNFPLAFSAAGGDTA--SALAAGCPVIVKGHTAHPGTSQIVAECIEQALKQE 195
Query: 250 GVPPGVVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLI 309
+P + + + G + + P + + FTGSV L+ + +
Sbjct: 196 QLPQAIFTLLQGNQRALGQALVSHPEIKAVGFTGSVGGGRALFNLAHERPEPIPFY---- 251
Query: 310 GECGGKNFHFIHASANVE--SVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
GE G N FI SA + + + S CGQ C+ ++ +
Sbjct: 252 GELGAINPTFIFPSAMRAKADLADQFVASMTMGCGQFCTKPGVVFALNTPE 302
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH,
oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A*
2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A*
3rhl_A*
Length = 517
Score = 103 bits (259), Expect = 4e-24
Identities = 57/224 (25%), Positives = 93/224 (41%), Gaps = 39/224 (17%)
Query: 145 CLDDLKYAAGNYYINDKSTGSVVGQQPFGGGRMSALTFYLEVLASNLGRGEGLDGFVAAV 204
+ +Y AG + DK G+ + R LT + E + G V
Sbjct: 141 SIQTFRYFAG--WC-DKIQGATIPINQARPNRNLTLT-----------KKEPV-GVCGIV 185
Query: 205 SPFNF----TA--IGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 257
P+N+ + L G++V+ KP+ L+ ++ ++AG+P GVVN
Sbjct: 186 IPWNYPLMMLSWKTA------ACLAAGNTVVIKPAQVTPLTALKFAELTLKAGIPKGVVN 239
Query: 258 FVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVY---KNFPRLIGECGG 314
+P G + G ++ P + I FTGS VGK+I N ++ E GG
Sbjct: 240 ILPGSGSLVGQRLSDHPDVRKIGFTGSTE--------VGKHIMKSCALSNVKKVSLELGG 291
Query: 315 KNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
K+ I A ++ V + S F G+ C A R++V ES+
Sbjct: 292 KSPLIIFADCDLNKAVQMGMSSVFFNKGENCIAAGRLFVEESIH 335
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics,
PSI-2, protein STR initiative; HET: NAD GOL; 1.80A
{Mycobacterium tuberculosis}
Length = 495
Score = 102 bits (257), Expect = 7e-24
Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 16/165 (9%)
Query: 199 GFVAAVSPFNF--TAIGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGV 255
G V A+ +N +A PAL G +++ KP+ L+ + ++ E G+P GV
Sbjct: 148 GVVGAIVAWNVPLFLAVNKIA--PALLAGCTIVLKPAAETPLTANALAEVFAEVGLPEGV 205
Query: 256 VNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVY--KNFPRLIGECG 313
++ VP G G +T++P + FTGS VG+ + + E G
Sbjct: 206 LSVVPG-GIETGQALTSNPDIDMFTFTGSS--------AVGREVGRRAAEMLKPCTLELG 256
Query: 314 GKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
GK+ I ++ + + + S GQ C +R+ P S +
Sbjct: 257 GKSAAIILEDVDLAAAIPMMVFSGVMNAGQGCVNQTRILAPRSRY 301
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine
aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD;
2.15A {Pisum sativum} PDB: 3iwk_A* 4a0m_A*
Length = 503
Score = 102 bits (256), Expect = 1e-23
Identities = 51/223 (22%), Positives = 83/223 (37%), Gaps = 38/223 (17%)
Query: 145 CLDDLKYAAGNYYINDKSTGSVVGQQPFGGGRMSALTFYLEVLASNLGRGEGLDGFVAAV 204
+Y A + +K + E + G V +
Sbjct: 114 VAGCFEYYAD---LAEKLDARQKAPVSLPMDTFKSHV-----------LREPI-GVVGLI 158
Query: 205 SPFNF----TA--IGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 257
+P+N+ + PAL G + + KPS+ A L+ + +I E G+PPGV+N
Sbjct: 159 TPWNYPMLMATWKVA------PALAAGCAAILKPSELASLTCLELGEICKEVGLPPGVLN 212
Query: 258 FVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVY--KNFPRLIGECGGK 315
+ GP G + P + + FTGS T G I + + E GGK
Sbjct: 213 ILTGLGPEAGAPLATHPDVDKVAFTGSSAT--------GSKIMTAAAQLVKPVSLELGGK 264
Query: 316 NFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
+ + +++ I F GQ CSA SR+ + ES+
Sbjct: 265 SPLVVFEDVDLDKAAEWAIFGCFWTNGQICSATSRLILHESIA 307
>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC;
HET: NAD; 2.10A {Thermus thermophilus}
Length = 515
Score = 100 bits (251), Expect = 4e-23
Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 23/169 (13%)
Query: 199 GFVAAVSPFNF----TA--IGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGV 251
G V ++P+N + I PAL G++V+ KP++ + + + +I+ EA +
Sbjct: 164 GPVGIITPWNAPLMLSTWRIA------PALAFGNTVVLKPAEWSPFTATKLAEILKEADL 217
Query: 252 PPGVVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVY--KNFPRLI 309
PPGV N V G G + A P + + TG T GK + + RL
Sbjct: 218 PPGVFNLVQGFGEEAGAALVAHPLVPLLTLTGETET--------GKIVMRNAADHLKRLS 269
Query: 310 GECGGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
E GGK+ + A A++E ++ + F + G++C+A SR+ V E +F
Sbjct: 270 PELGGKSPALVFADADLERALDAVVFQIFSFNGERCTASSRLLVEEKIF 318
>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics,
PSI-2, protein initiative; 2.00A {Listeria
monocytogenes}
Length = 464
Score = 100 bits (250), Expect = 4e-23
Identities = 37/166 (22%), Positives = 58/166 (34%), Gaps = 21/166 (12%)
Query: 199 GFVAAVSPFNF---TAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIE----AG 250
G VA + P T I ++ G+S+++ P AL + +I+ E AG
Sbjct: 110 GVVAGLIPSTNPTSTVIY-KTL--ISIKAGNSIVFSPHPNALKAILETVRIISEAAEKAG 166
Query: 251 VPPGVVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIG 310
P G ++ + D + A I TG + K Y + IG
Sbjct: 167 CPKGAISCMTVPTIQGTDQLMKHKDTAVILATGGS--------AMVKAA--YSSGTPAIG 216
Query: 311 ECGGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPES 356
G FI SAN+ V + S G C++ + V
Sbjct: 217 VGPGNGPAFIERSANIPRAVKHILDSKTFDNGTICASEQSVVVERV 262
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH,
isomerization, oxidoreductase; HET: NAD; 1.42A {Homo
sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A*
1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A*
3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A*
3n81_A 3n82_A* 3n83_A* ...
Length = 500
Score = 100 bits (251), Expect = 5e-23
Identities = 52/170 (30%), Positives = 80/170 (47%), Gaps = 24/170 (14%)
Query: 199 GFVAAVSPFNF----TA--IGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGV 251
G + P+NF A +G PAL G+ V+ K ++ L+ + ++ EAG
Sbjct: 160 GVCGQIIPWNFPLLMQAWKLG------PALATGNVVVMKVAEQTPLTALYVANLIKEAGF 213
Query: 252 PPGVVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVY---KNFPRL 308
PPGVVN VP GP G I + + + FTGS ++G+ I V N R+
Sbjct: 214 PPGVVNIVPGFGPTAGAAIASHEDVDKVAFTGST--------EIGRVIQVAAGSSNLKRV 265
Query: 309 IGECGGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
E GGK+ + I + A+++ V + F GQ A SR +V E ++
Sbjct: 266 TLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCSCAGSRTFVQEDIY 315
>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic,
oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP:
c.82.1.1 PDB: 1o9j_A* 1bi9_A*
Length = 501
Score = 99 bits (250), Expect = 6e-23
Identities = 56/170 (32%), Positives = 85/170 (50%), Gaps = 24/170 (14%)
Query: 199 GFVAAVSPFNF----TA--IGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGV 251
G + P+NF IG PAL G++V+ KP++ L+ + ++ EAG
Sbjct: 161 GVCGQIIPWNFPLLMFLWKIG------PALSCGNTVVVKPAEQTPLTALHMGSLIKEAGF 214
Query: 252 PPGVVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVY---KNFPRL 308
PPGVVN VP GP G I++ + + FTGS +VGK I N R+
Sbjct: 215 PPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGST--------EVGKLIKEAAGKSNLKRV 266
Query: 309 IGECGGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
E GGK+ + A A++++ V + F + GQ C A SR++V ES++
Sbjct: 267 SLELGGKSPCIVFADADLDNAVEFAHQGVFYHQGQCCIAASRLFVEESIY 316
>2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP
complex, oxidoreductase; HET: NAP CSO; 2.10A
{Pseudomonas aeruginosa} PDB: 2wme_A* 2wox_A* 3zqa_A*
2xdr_A*
Length = 490
Score = 99.5 bits (249), Expect = 7e-23
Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 24/170 (14%)
Query: 199 GFVAAVSPFNF----TA--IGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGV 251
G VA + +N+ PAL G+++++KPS+ L+ + +I EAGV
Sbjct: 144 GVVAGIGAWNYPVQIALWKSA------PALAAGNAMIFKPSEVTPLTALKLAEIYTEAGV 197
Query: 252 PPGVVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVY---KNFPRL 308
P GV N + G G +T P + I+FTG T GK + + +
Sbjct: 198 PDGVFNVLTGSGREVGQWLTEHPLIEKISFTGGTST--------GKKVMASASSSSLKEV 249
Query: 309 IGECGGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
E GGK+ I A+++ + + + F GQ C+ +R+++ S
Sbjct: 250 TMELGGKSPLIIFPDADLDRAADIAVMANFFSSGQVCTNGTRVFIHRSQQ 299
>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti
deseases, NAD, oxidoreductase, PSI; 1.70A
{Staphylococcus aureus} PDB: 3fg0_A*
Length = 520
Score = 98.4 bits (246), Expect = 2e-22
Identities = 57/223 (25%), Positives = 94/223 (42%), Gaps = 41/223 (18%)
Query: 145 CLDDLKYAAGNYYINDKSTGSVVGQQPFGGGRMSALTFYLEVLASNLGRGEGLDGFVAAV 204
+ Y AG + DK G ++ + E + G V +
Sbjct: 136 IHNVFMYFAG---LADKDGGEMI---DSPIPDTESKI-----------VKEPV-GVVTQI 177
Query: 205 SPFNF----TA--IGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 257
+P+N+ + I PAL G S++ KPS+ L+ ++++M E G P G +N
Sbjct: 178 TPWNYPLLQASWKIA------PALATGCSLVMKPSEITPLTTIRVFELMEEVGFPKGTIN 231
Query: 258 FVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNI--NVYKNFPRLIGECGGK 315
+ G GD ++ + ++FTG + T GK+I N N + E GGK
Sbjct: 232 LILGAGSEVGDVMSGHKEVDLVSFTGGIET--------GKHIMKNAANNVTNIALELGGK 283
Query: 316 NFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
N + I A+ E V+ + + + GQ CSA SR+ V S+
Sbjct: 284 NPNIIFDDADFELAVDQALNGGYFHAGQVCSAGSRILVQNSIK 326
>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG,
structural genomics, midwest center for STR genomics;
2.30A {Vibrio parahaemolyticus}
Length = 452
Score = 97.8 bits (244), Expect = 2e-22
Identities = 29/166 (17%), Positives = 58/166 (34%), Gaps = 21/166 (12%)
Query: 199 GFVAAVSPFNF---TAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEA----G 250
G + + P TAI +L + +++ P A S K++++A G
Sbjct: 105 GIICGIVPTTNPTSTAIF-KSL--ISLKTRNGIIFSPHPRAKNSTNDAAKLVLDAAVAAG 161
Query: 251 VPPGVVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIG 310
P ++ ++ + + +A I TG + K Y + IG
Sbjct: 162 APKDIIGWIDQPSVELSNALMKHDDIALILATGGP--------GMVKAA--YSSGKPAIG 211
Query: 311 ECGGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPES 356
G I +A+++ V + S G C++ + V +
Sbjct: 212 VGAGNVPVVIDETADIKRAVASVLMSKTFDNGVVCASEQAVIVVDE 257
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Length = 517
Score = 97.2 bits (243), Expect = 5e-22
Identities = 44/142 (30%), Positives = 72/142 (50%), Gaps = 12/142 (8%)
Query: 220 PAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASPYLAG 278
PAL G+++++KPS+ L I +I+IEAG+P G+ N + D G + P +A
Sbjct: 173 PALVAGNAMVFKPSENTPLGALKIAEILIEAGLPKGLFNVIQGDRDT-GPLLVNHPDVAK 231
Query: 279 INFTGSVPTFNRLWLQVGKNINVY--KNFPRLIGECGGKNFHFIHASANVESVVNGTIRS 336
++ TGSVPT G+ + + + E GGK+ + A++ES V G +
Sbjct: 232 VSLTGSVPT--------GRKVAAAAAGHLKHVTMELGGKSPMIVFDDADIESAVGGAMLG 283
Query: 337 AFEYCGQKCSACSRMYVPESLF 358
F GQ CS +R++V +
Sbjct: 284 NFYSSGQVCSNGTRVFVQKKAK 305
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde
oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB:
1bpw_A*
Length = 503
Score = 94.9 bits (237), Expect = 3e-21
Identities = 61/223 (27%), Positives = 94/223 (42%), Gaps = 43/223 (19%)
Query: 145 CLDDLKYAAGNYYINDKSTGSVVGQQPFGGGRMSALTFYLEVLASNLGRGEGLDGFVAAV 204
++Y AG + +G + GG A T R E L G A +
Sbjct: 122 AWQCIEYYAG---LAPTLSGQHI---QLPGGAF-AYT-----------RREPL-GVCAGI 162
Query: 205 SPFNF----TA--IGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 257
+N+ A PAL G++V++KPS ++ + +I EAGVP G+VN
Sbjct: 163 LAWNYPFMIAAWKCA------PALACGNAVVFKPSPMTPVTGVILAEIFHEAGVPVGLVN 216
Query: 258 FVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVY--KNFPRLIGECGGK 315
V G G + P +A ++FTGSVPT GK + K + E GGK
Sbjct: 217 VVQG-GAETGSLLCHHPNVAKVSFTGSVPT--------GKKVMEMSAKTVKHVTLELGGK 267
Query: 316 NFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
+ I +E+ V G + + F GQ C+ +R++V +
Sbjct: 268 SPLLIFKDCELENAVRGALMANFLTQGQVCTNGTRVFVQREIM 310
>3v4c_A Aldehyde dehydrogenase (NADP+); structural genomics, PSI-biology,
nysgrc, NEW YORK structura genomics research consortium;
HET: PE4; 1.91A {Sinorhizobium meliloti}
Length = 528
Score = 94.4 bits (235), Expect = 4e-21
Identities = 39/170 (22%), Positives = 58/170 (34%), Gaps = 18/170 (10%)
Query: 199 GFVAAVSPFNF----TAIGGNLAYTPAL-MGSSVLWKPSD----TALLSNYTIYKIMIEA 249
G VA NF + GG+ A AL G V+ K T + + + +
Sbjct: 171 GPVAVFGASNFPLAFSTAGGDTA--AALAAGCPVVVKGHSAHPGTGEIVAEAVDAAIRKT 228
Query: 250 GVPPGVVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLI 309
GV PGV + + G + P++ + FTGS+ L+
Sbjct: 229 GVHPGVFSLIQGGSRDVGHALVQHPHIKAVGFTGSLAGGRALFDLCAARPEPI----PFF 284
Query: 310 GECGGKNFHFIHASANVE---SVVNGTIRSAFEYCGQKCSACSRMYVPES 356
GE G N F+ A ++ G S GQ C+ V E
Sbjct: 285 GELGSVNPMFLLPEALKARAETLGQGWAGSLTMGAGQFCTNPGIAVVIEG 334
>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein
structure initiative, nysgrc, P biology; HET: MSE NAD;
2.01A {Sinorhizobium meliloti} PDB: 4dal_A*
Length = 498
Score = 93.8 bits (234), Expect = 7e-21
Identities = 43/169 (25%), Positives = 80/169 (47%), Gaps = 24/169 (14%)
Query: 199 GFVAAVSPFNF----TA--IGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGV 251
G V +++P+N+ A + PA+ G++V++KPS+ L+ + +++ + +
Sbjct: 163 GIVGSIAPWNYPLMMMAWKLA------PAIGGGNTVVFKPSEQTPLTALKLARLIADI-L 215
Query: 252 PPGVVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVY--KNFPRLI 309
P GVVN + G G+ + P + ++ TG + GK + K R
Sbjct: 216 PEGVVNVITGRGETVGNALINHPKVGMVSITGDIA--------TGKKVLAAAAKTVKRTH 267
Query: 310 GECGGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
E GGK ++ A++E+VVNG + GQ C+A R+Y ++
Sbjct: 268 LELGGKAPVIVYGDADLEAVVNGIRTFGYYNAGQDCTAACRIYAEAGIY 316
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence,
kinetics, oxidor; 2.10A {Escherichia coli} SCOP:
c.82.1.1 PDB: 1wnb_A
Length = 495
Score = 92.2 bits (230), Expect = 2e-20
Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 24/169 (14%)
Query: 199 GFVAAVSPFNF----TA--IGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGV 251
G VA+++P+N+ A + PAL G+ V+ KPS+ L+ + ++ +
Sbjct: 161 GVVASIAPWNYPLMMAAWKLA------PALAAGNCVVLKPSEITPLTALKLAELAKDI-F 213
Query: 252 PPGVVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVY--KNFPRLI 309
P GVVN + G GD +T P + ++ TGS+ T G++I + + R
Sbjct: 214 PAGVVNILFGRGKTVGDPLTGHPKVRMVSLTGSIAT--------GEHIISHTASSIKRTH 265
Query: 310 GECGGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
E GGK + A++E+VV G + GQ C+A R+Y + ++
Sbjct: 266 MELGGKAPVIVFDDADIEAVVEGVRTFGYYNAGQDCTAACRIYAQKGIY 314
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex,
oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB:
2ilu_A* 2hg2_A* 2opx_A*
Length = 479
Score = 89.5 bits (223), Expect = 2e-19
Identities = 47/162 (29%), Positives = 73/162 (45%), Gaps = 13/162 (8%)
Query: 199 GFVAAVSPFNFTA--IGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGV 255
G + P+NF I +A PAL G++++ KPS+ + KI+ E G+P GV
Sbjct: 144 GVTTGILPWNFPFFLIARKMA--PALLTGNTIVIKPSEFTPNNAIAFAKIVDEIGLPRGV 201
Query: 256 VNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGGK 315
N V G G + +P +A ++ TGSV ++ KNI ++ E GG
Sbjct: 202 FNLVLGRGETVGQELAGNPKVAMVSMTGSVSAGEKIMATAAKNIT------KVCLELGG- 254
Query: 316 NFHFI-HASANVESVVNGTIRSAFEYCGQKCSACSRMYVPES 356
I A++E V + S GQ C+ R+YV +
Sbjct: 255 KAPAIVMDDADLELAVKAIVDSRVINSGQVCNCAERVYVQKG 296
>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein
initiative; 1.90A {Pseudoalteromonas atlantica T6C}
Length = 497
Score = 85.7 bits (213), Expect = 3e-18
Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 13/162 (8%)
Query: 199 GFVAAVSPFNFTA--IGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGV 255
G V ++ +NF G + PAL G++++ KP+ L+ + +I EAG+P GV
Sbjct: 150 GVVVGITAWNFPLALAGRKIG--PALITGNTMVLKPTQETPLATTELGRIAKEAGLPDGV 207
Query: 256 VNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGGK 315
+N + G V G T+ SP I TGS +++ + + ++ E GG
Sbjct: 208 LNVINGTGSVVGQTLCESPITKMITMTGSTVAGKQIYKTSAEYMT------PVMLELGG- 260
Query: 316 NFHFI-HASANVESVVNGTIRSAFEYCGQKCSACSRMYVPES 356
+ A+++ + F CGQ C+ R+YV S
Sbjct: 261 KAPMVVMDDADLDKAAEDALWGRFANCGQVCTCVERLYVHAS 302
>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.63A {Marinobacter aquaeolei}
Length = 506
Score = 84.1 bits (209), Expect = 1e-17
Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 21/166 (12%)
Query: 199 GFVAAVSPFNFTA------IGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGV 251
G + P+NF + AL G + KP+ L+ + +M + +
Sbjct: 149 GVTGLIVPWNFPIGMIAKKLS------AALAAGCPSVIKPASETPLTMIAFFSVMDKLDL 202
Query: 252 PPGVVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGE 311
P G+VN V V G + + ++FTGS +L + + + K +L E
Sbjct: 203 PDGMVNLVMGKASVIGKVLCEHKDVPMLSFTGSTEVGRKLIVDTAEQV---K---KLALE 256
Query: 312 CGGKNFHFI-HASANVESVVNGTIRSAFEYCGQKCSACSRMYVPES 356
GG N FI A++E+ + I + F GQ C +R++V E
Sbjct: 257 LGG-NAPFIVFDDADLEAAADNLIANKFRGGGQTCVCANRIFVHEK 301
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural
genomics; HET: MES; 2.10A {Brucella melitensis biovar
ABORTUS2308}
Length = 504
Score = 83.8 bits (208), Expect = 1e-17
Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 21/166 (12%)
Query: 199 GFVAAVSPFNFTA------IGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGV 251
G AA++P+NF A PAL G +++ +P+D L+ + + +AG+
Sbjct: 170 GVTAAITPWNFPAAMITRKAA------PALAAGCTMIVRPADLTPLTALALGVLAEKAGI 223
Query: 252 PPGVVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGE 311
P GV+ V G +T++ + ++FTGS L Q I R+ E
Sbjct: 224 PAGVLQIVTGKAREIGAELTSNDTVRKLSFTGSTEVGRLLMAQCAPTIK------RISLE 277
Query: 312 CGGKNFHFI-HASANVESVVNGTIRSAFEYCGQKCSACSRMYVPES 356
GG N FI A++++ V+G + S + GQ C +R+YV
Sbjct: 278 LGG-NAPFIVFDDADLDAAVDGAMVSKYRNAGQTCVCANRIYVQRG 322
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious
disease, ssgcid, seattle structural genomi for
infectious disease; 2.70A {Burkholderia pseudomallei}
PDB: 3ifh_Q
Length = 484
Score = 83.0 bits (206), Expect = 2e-17
Identities = 52/166 (31%), Positives = 79/166 (47%), Gaps = 21/166 (12%)
Query: 199 GFVAAVSPFNFTA------IGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGV 251
G AA++P+NF A +G PAL G ++ KP+++ S + + AGV
Sbjct: 150 GVCAAITPWNFPAAMIARKVG------PALAAGCPIVVKPAESTPFSALAMAFLAERAGV 203
Query: 252 PPGVVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGE 311
P GV++ V D G IT++P + ++FTGS L Q + K +L E
Sbjct: 204 PKGVLSVVIGDPKAIGTEITSNPIVRKLSFTGSTAVGRLLMAQSAPTV---K---KLTLE 257
Query: 312 CGGKNFHFI-HASANVESVVNGTIRSAFEYCGQKCSACSRMYVPES 356
GG N FI A++++ V G I S + GQ C +R +V E
Sbjct: 258 LGG-NAPFIVFDDADLDAAVEGAIASKYRNNGQTCVCTNRFFVHER 302
>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP
binding, oxidoreductase; HET: NAP; 2.30A {Escherichia
coli}
Length = 481
Score = 83.0 bits (206), Expect = 2e-17
Identities = 53/166 (31%), Positives = 81/166 (48%), Gaps = 21/166 (12%)
Query: 199 GFVAAVSPFNFTA------IGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGV 251
G AA++P+NF A G PAL G +++ KP+ S + ++ I AGV
Sbjct: 147 GVTAAITPWNFPAAMITRKAG------PALAAGCTMVLKPASQTPFSALALAELAIRAGV 200
Query: 252 PPGVVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGE 311
P GV N V G+ +T++P + ++FTGS +L Q K+I K ++ E
Sbjct: 201 PAGVFNVVTGSAGAVGNELTSNPLVRKLSFTGSTEIGRQLMEQCAKDI---K---KVSLE 254
Query: 312 CGGKNFHFI-HASANVESVVNGTIRSAFEYCGQKCSACSRMYVPES 356
GG N FI A+++ V G + S F GQ C +R+YV +
Sbjct: 255 LGG-NAPFIVFDDADLDKAVEGALASKFRNAGQTCVCANRLYVQDG 299
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase;
oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Length = 486
Score = 77.6 bits (192), Expect = 1e-15
Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 28/162 (17%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPALM-------GSSVLWKPSDTALLSNYTIYKIMIEAGV 251
G V ++PFNF + P M G++ + KPS+ L + ++ +AG+
Sbjct: 143 GVVGGIAPFNFPMM------VPCWMFPMAIALGNTFILKPSERTPLLTEKLVELFEKAGL 196
Query: 252 PPGVVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVY----KNFPR 307
P GV N V V + I P + I+F GS P VG+ + Y +N R
Sbjct: 197 PKGVFNVVYGAHDVV-NGILEHPEIKAISFVGSKP--------VGEYV--YKKGSENLKR 245
Query: 308 LIGECGGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACS 349
+ G KN + AN+E V + +AF G++C AC+
Sbjct: 246 VQSLTGAKNHTIVLNDANLEDTVTNIVGAAFGSAGERCMACA 287
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion,
oxidoreductase, transit peptide, disease mutation, SSA,
NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A
2w8q_A 2w8r_A*
Length = 487
Score = 77.6 bits (192), Expect = 1e-15
Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 24/171 (14%)
Query: 199 GFVAAVSPFNFTA------IGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGV 251
G A ++P+NF + +G AL G +V+ KP++ S + ++ +AG+
Sbjct: 148 GVAAVITPWNFPSAMITRKVG------AALAAGCTVVVKPAEDTPFSALALAELASQAGI 201
Query: 252 PPGVVNFVPA---DGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRL 308
P GV N +P + G+ I P ++ I+FTGS T L ++ K R+
Sbjct: 202 PSGVYNVIPCSRKNAKEVGEAICTDPLVSKISFTGSTTTGKILLHHAANSV---K---RV 255
Query: 309 IGECGGKNFHFI-HASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
E GG FI SANV+ V G + S F GQ C ++ V +
Sbjct: 256 SMELGG-LAPFIVFDSANVDQAVAGAMASKFRNTGQTCVCSNQFLVQRGIH 305
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics,
protein structure INI nysgrc, PSI-biology; 2.90A
{Sinorhizobium meliloti}
Length = 521
Score = 76.9 bits (190), Expect = 2e-15
Identities = 44/162 (27%), Positives = 70/162 (43%), Gaps = 28/162 (17%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPALM-------GSSVLWKPSDTALLSNYTIYKIMIEAGV 251
G A ++PFNF + P M G++ + KPS+ + ++MIEAG+
Sbjct: 164 GIGAGITPFNFPGM------IPMWMFAPAIACGNAFILKPSERDPSVPIRLAELMIEAGL 217
Query: 252 PPGVVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVY----KNFPR 307
P G++N V D D I P +A ++F GS P + + + Y N R
Sbjct: 218 PAGILNVVNGDKGAV-DAILTHPDIAAVSFVGSTP--------IARYV--YGTAAMNGKR 266
Query: 308 LIGECGGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACS 349
G KN I A+++ N I + + G++C A S
Sbjct: 267 AQCFGGAKNHMIIMPDADLDQAANALIGAGYGSAGERCMAIS 308
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST
genomics of infectious diseases, oxidoreductase, csgid;
1.85A {Salmonella typhimurium} PDB: 3efv_A
Length = 462
Score = 71.0 bits (175), Expect = 2e-13
Identities = 45/167 (26%), Positives = 70/167 (41%), Gaps = 20/167 (11%)
Query: 199 GFVAAVSPFNF-----TAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVP 252
G + A+ P+NF P L+ G+S L K + I +I+ EAG P
Sbjct: 128 GVILAIMPWNFPLWQVLRGAV-----PILLAGNSYLLKHAPNVTGCAQMIARILAEAGTP 182
Query: 253 PGVVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGEC 312
GV +V A+ + P +A + TGSV + Q G + K + + E
Sbjct: 183 AGVYGWVNANNEGVSQ-MINDPRIAAVTVTGSVRAGAAIGAQAGAAL---K---KCVLEL 235
Query: 313 GGKNFHFI-HASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
GG + FI A++E V + ++ GQ C+A R V E +
Sbjct: 236 GG-SDPFIVLNDADLELAVKAAVAGRYQNTGQVCAAAKRFIVEEGIA 281
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology,
structural genomics, NEW YORK structura genomics
research consortium; 1.88A {Lactobacillus acidophilus}
Length = 484
Score = 69.9 bits (172), Expect = 4e-13
Identities = 42/166 (25%), Positives = 66/166 (39%), Gaps = 20/166 (12%)
Query: 199 GFVAAVSPFNF-----TAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVP 252
G + A P+NF + P + G+ +L K + S KI+ AG P
Sbjct: 125 GVIMACEPWNFPLYQVIRVFA-----PNFIVGNPILLKHAHNVPGSAALTAKIIKRAGAP 179
Query: 253 PGVVNFVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGEC 312
G + + D I A P + G+ TGS + + GKN+ K + E
Sbjct: 180 EGSLINLYPSYDQLAD-IIADPRIQGVALTGSERGGSAVAEAAGKNL---K---KSTMEL 232
Query: 313 GGKNFHFI-HASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESL 357
GG N FI A+ + + N + GQ C++ R+ V +S
Sbjct: 233 GG-NDAFIVLDDADPQVLRNVLNDARTYNDGQVCTSSKRIIVEKSR 277
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 1e-04
Identities = 71/425 (16%), Positives = 119/425 (28%), Gaps = 180/425 (42%)
Query: 97 KKKIAKFYYA------TPVLK---SALDIVSSLCPYEKNSVGL-LI-----NTEVLHDDL 141
K++ K Y P K SAL ++ + + L I NT+
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSAL--FRAV---GEGNAQLVAIFGGQGNTDD----- 168
Query: 142 YFRCLDDLKYAAGNYYIND--KSTGSVVGQQPFGGGRMSALTFYLEVLASNLGRGEGLD- 198
YF L DL Y + + D K + + + A + +GL+
Sbjct: 169 YFEELRDL-YQTYHVLVGDLIKFSAETL--SELIRTTLDAEKVF----------TQGLNI 215
Query: 199 -------------GFV--AAVS-PF-------NFTAIGGNLAYTPA-----LMGSSVLWK 230
++ +S P ++ L +TP L G++ +
Sbjct: 216 LEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 231 ---------PSDT--ALLSN-YTIYKIMIEAGV-----------PPGVVNFVPADGPVFG 267
+D+ + + ++ GV PP ++ D
Sbjct: 276 GLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL----EDSLENN 331
Query: 268 DTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGGKNFHFIHASANVE 327
+ SP L S+ + +Q + + N H A VE
Sbjct: 332 EG-VPSPML-------SISNLTQEQVQ------------DYVNKT---NSHL-PAGKQVE 367
Query: 328 -SVVNGTIRSAFEYCGQKCSACSRMYV----PESLFCFCSCFLLLF----------LFSA 372
S+VNG ++ V P+SL+ FS
Sbjct: 368 ISLVNG----------------AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE 411
Query: 373 SVPVFCFCSCFLLLFLFSTSVPVFC-FCSCFL----------LL---FLFSAS---VPVF 415
F + FL PV F S L L+ F+A +PV+
Sbjct: 412 RKLK--FSNRFL---------PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY 460
Query: 416 C-FCG 419
F G
Sbjct: 461 DTFDG 465
Score = 36.6 bits (84), Expect = 0.017
Identities = 28/146 (19%), Positives = 47/146 (32%), Gaps = 47/146 (32%)
Query: 140 DLY-----FRCL----DDLKYAAGNYYINDKSTGSVVGQQP------FGG--GR-----M 177
DLY + + D + Y S +V P FGG G+
Sbjct: 1634 DLYKTSKAAQDVWNRAD--NHFKDTYGF---SILDIVINNPVNLTIHFGGEKGKRIRENY 1688
Query: 178 SALTFYLEVLASNLGRGEGLDGFV-AAVSPFNFTAIGGNLAYT----PALMGSSVLWKPS 232
SA+ F E + + E + + + + F + G L+ T PAL
Sbjct: 1689 SAMIF--ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALT--------- 1737
Query: 233 DTALLSNYTIYKIMIEAGVPPGVVNF 258
L+ ++ + G+ P F
Sbjct: 1738 ---LME-KAAFEDLKSKGLIPADATF 1759
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.025
Identities = 54/367 (14%), Positives = 98/367 (26%), Gaps = 125/367 (34%)
Query: 2 EYLKH--NRPEYMRCQIEYLHFSLLILDRYNVQETPEW-------------------TYL 40
L+ Y C LL+L NVQ W +L
Sbjct: 232 AELRRLLKSKPYENC--------LLVLL--NVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 41 PGSK--------------EREAITAALKRVGSTVEEVPI-----------VIG------- 68
+ E + LK + +++P +I
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 69 --SKEYKTEHVQYQPM-----VSLHVQYQPMPHNHKK---KIAKFYYATPVLKSAL---- 114
+K HV + SL+V P ++K +++ F + + L
Sbjct: 342 ATWDNWK--HVNCDKLTTIIESSLNVLE---PAEYRKMFDRLSVFPPSAHIPTILLSLIW 396
Query: 115 ---------DIVSSLCPY---EKNSVGLLINTEVLHDDLYF--RCLDDLKYAA-----GN 155
+V+ L Y EK I+ + +Y + + +YA +
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTIS---IP-SIYLELKVKLENEYALHRSIVDH 452
Query: 156 YYINDKSTGSVVGQQPFGGGRMSALTFYLEVLASNLGRGEGLDGFVAAVSPFNFTAIGGN 215
Y I + S + +L N+ E + F F F +
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHL----KNIEHPERMTLFRMVFLDFRF--LEQK 506
Query: 216 LAYTPALMGSSVLWKPSDTALLSNYTIYKIMIEAGVPP------GVVNFVPADGPVFGDT 269
+ + ++ S L YK I P +++F+P
Sbjct: 507 IRHD----STAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN---- 558
Query: 270 ITASPYL 276
+ S Y
Sbjct: 559 LICSKYT 565
Score = 30.6 bits (68), Expect = 1.2
Identities = 7/64 (10%), Positives = 21/64 (32%), Gaps = 3/64 (4%)
Query: 291 LWLQVGKNINVYKNFPRLIGECGGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSR 350
W + K + + F + E N+ F+ + E + + + ++
Sbjct: 68 FWTLLSKQEEMVQKF---VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 351 MYVP 354
++
Sbjct: 125 VFAK 128
Score = 27.9 bits (61), Expect = 8.5
Identities = 16/81 (19%), Positives = 24/81 (29%), Gaps = 25/81 (30%)
Query: 3 YLKH---NRPEYMRCQIEYLHFSLLILDRYNVQETPEWTYLPGSKEREAITAALKRVGST 59
Y + N P+Y R L F L + L SK + + AL
Sbjct: 530 YKPYICDNDPKYERLVNAILDF----LPKIE-------ENLICSKYTDLLRIALMAEDEA 578
Query: 60 VEEVPIVIGSKEYKTEHVQYQ 80
+ ++ H Q Q
Sbjct: 579 I-----------FEEAHKQVQ 588
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.10
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 14/41 (34%)
Query: 97 KKKIAKFYYATPVLKSALDIVSSLCPYEKNSV-GLLINTEV 136
K+ + K L +SL Y +S L I +
Sbjct: 19 KQALKK-----------LQ--ASLKLYADDSAPALAIKATM 46
Score = 28.8 bits (63), Expect = 2.1
Identities = 10/47 (21%), Positives = 14/47 (29%), Gaps = 20/47 (42%)
Query: 15 QIEYLHFSLLILDRYNVQETPEWTYLPGSKEREAITAALKRVGSTVE 61
++ L SL + Y S AI A T+E
Sbjct: 21 ALKKLQASLKL-------------YADDSAPALAIKA-------TME 47
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for
structural genomics, JCSG; HET: MSE; 2.19A
{Helicobacter pylori 26695}
Length = 376
Score = 29.1 bits (66), Expect = 3.2
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Query: 46 REAITAALKR---VGSTVEEVPIVIGSKE 71
R A KR + E+ +GS+E
Sbjct: 65 RAAQRGFFKRRFKIELKENELISTLGSRE 93
>2zyr_A Lipase, putative; fatty acid, hydrolase; HET: 1PE; 1.77A
{Archaeoglobus fulgidus} PDB: 2zys_A* 2zyi_A* 2zyh_A*
Length = 484
Score = 28.8 bits (63), Expect = 4.3
Identities = 17/110 (15%), Positives = 37/110 (33%), Gaps = 9/110 (8%)
Query: 162 STGSVVGQQ--PFGGGRMSALTFYLEVLASNLGR-GEGLDGFVAAVSPFNFTAIGGNLAY 218
S G+ + R + + + + EG+ +P A+G
Sbjct: 136 SMGTFFLVRYVNSSPERAAKVAHLILLDGVWGVDAPEGIPTLAVFGNPKALPALGL--PE 193
Query: 219 TPALMGSSVLWKP--SDTALLSNYTIYKIMIE--AGVPPGVVNFVPADGP 264
+ ++ ++ + L ++ + +M E G P + VP DG
Sbjct: 194 EKVVYNATNVYFNNMTHVQLCTSPETFAVMFEFINGYKPATTDIVPQDGD 243
>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester,
structural genomi montreal-kingston bacterial structural
genomics initiative; 1.90A {Escherichia coli} SCOP:
c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A*
Length = 531
Score = 28.5 bits (64), Expect = 4.7
Identities = 19/115 (16%), Positives = 36/115 (31%), Gaps = 28/115 (24%)
Query: 231 PSDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFG-----DTITASPYL------AGI 279
L++ V G + + + G FG I G+
Sbjct: 312 ADGIGLVAREEGCADDFILTVETGPIGGITSQGIAFGANVNTRAILDMTSQFDFYHGGGL 371
Query: 280 NFT--GSVPTFNRLWLQVGK--NINVYKNFPRLIGECGGKNFHFIHASANVESVV 330
+ +V + N+ V+K +++G GG FI SA + ++
Sbjct: 372 DVCYLSF--------AEVDQHGNVGVHKFNGKIMG-TGG----FIDISATSKKII 413
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme,
S-adenosyl-methionine, allostery; 2.25A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*
Length = 486
Score = 28.6 bits (64), Expect = 4.8
Identities = 7/48 (14%), Positives = 10/48 (20%)
Query: 320 IHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLFCFCSCFLLL 367
I A SA + Y + + LL
Sbjct: 24 IRDEARRNRSNAVNPFSAKYVPFNAAPGSTESYSLDEIVYRSRSGGLL 71
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent
aminotransferase; 2.05A {Chlamydia trachomatis} PDB:
3asb_A*
Length = 400
Score = 27.6 bits (62), Expect = 9.1
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 46 REAITAALKRVGSTVEEVPIVIGSKE 71
R+ ++ R +E+ I G+K
Sbjct: 81 RQKLSEDFYRGFVDAKEIFISDGAKV 106
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI,
protein structure initiative; 1.80A {Sulfolobus
solfataricus P2} SCOP: b.40.4.15 PDB: 3irb_A
Length = 145
Score = 26.8 bits (59), Expect = 9.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 342 GQKCSACSRMYVPESLFC 359
G KCS C R++VP +C
Sbjct: 47 GSKCSKCGRIFVPARSYC 64
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.140 0.445
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,577,306
Number of extensions: 400009
Number of successful extensions: 1123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1038
Number of HSP's successfully gapped: 75
Length of query: 428
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 332
Effective length of database: 4,021,377
Effective search space: 1335097164
Effective search space used: 1335097164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (26.6 bits)