RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1960
(428 letters)
>d1o04a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Human (Homo sapiens), mitochondrial [TaxId: 9606]}
Length = 494
Score = 128 bits (324), Expect = 2e-33
Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 6/161 (3%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 257
G + P+NF + PAL G+ V+ K ++ L+ + ++ EAG PPGVVN
Sbjct: 154 GVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVN 213
Query: 258 FVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGGKNF 317
VP GP G I + + + FTGS + + G N R+ E GGK+
Sbjct: 214 IVPGFGPTAGAAIASHEDVDKVAFTGSTEIGRVIQVAAGS-----SNLKRVTLELGGKSP 268
Query: 318 HFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
+ I + A+++ V + F GQ A SR +V E ++
Sbjct: 269 NIIMSDADMDWAVEQAHFALFFNQGQCSCAGSRTFVQEDIY 309
Score = 32.7 bits (74), Expect = 0.089
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 11/43 (25%)
Query: 153 AGNYYINDKSTGSVVGQQPFGGGRMS---------ALTFYLEV 186
AG ++N Q PFGG +MS L Y EV
Sbjct: 442 AGTVWVNC--YDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEV 482
>d1bxsa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Sheep (Ovis aries) [TaxId: 9940]}
Length = 494
Score = 126 bits (318), Expect = 1e-32
Identities = 52/161 (32%), Positives = 83/161 (51%), Gaps = 6/161 (3%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 257
G + P+NF + PAL G++V+ KP++ L+ + ++ EAG PPGVVN
Sbjct: 154 GVCGQIIPWNFPLLMFLWKIGPALSCGNTVVVKPAEQTPLTALHMGSLIKEAGFPPGVVN 213
Query: 258 FVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGGKNF 317
VP GP G I++ + + FTGS + GK+ N R+ E GGK+
Sbjct: 214 IVPGYGPTAGAAISSHMDVDKVAFTGSTEVGKLIKEAAGKS-----NLKRVSLELGGKSP 268
Query: 318 HFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLF 358
+ A A++++ V + F + GQ C A SR++V ES++
Sbjct: 269 CIVFADADLDNAVEFAHQGVFYHQGQCCIAASRLFVEESIY 309
Score = 33.1 bits (75), Expect = 0.066
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 11/43 (25%)
Query: 153 AGNYYINDKSTGSVVGQQPFGGGRMS---------ALTFYLEV 186
+G ++N V Q PFGG +MS Y EV
Sbjct: 442 SGTVWVNC--YSVVSAQCPFGGFKMSGNGRELGEYGFHEYTEV 482
>d1a4sa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Baltic cod (Gadus callarias) [TaxId: 8053]}
Length = 503
Score = 120 bits (301), Expect = 2e-30
Identities = 44/162 (27%), Positives = 76/162 (46%), Gaps = 8/162 (4%)
Query: 206 PFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVNFVPADGP 264
+N+ + PAL G++V++KPS ++ + +I EAGVP G+VN V
Sbjct: 164 AWNYPFMIAAWKCAPALACGNAVVFKPSPMTPVTGVILAEIFHEAGVPVGLVNVVQGGAE 223
Query: 265 VFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGGKNFHFIHASA 324
G + P +A ++FTGSVPT ++ K + + E GGK+ I
Sbjct: 224 T-GSLLCHHPNVAKVSFTGSVPTGKKVMEMSAKTV------KHVTLELGGKSPLLIFKDC 276
Query: 325 NVESVVNGTIRSAFEYCGQKCSACSRMYVPESLFCFCSCFLL 366
+E+ V G + + F GQ C+ +R++V + ++
Sbjct: 277 ELENAVRGALMANFLTQGQVCTNGTRVFVQREIMPQFLEEVV 318
Score = 35.5 bits (81), Expect = 0.010
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 11/43 (25%)
Query: 153 AGNYYINDKSTGSVVGQQPFGGGRMS---------ALTFYLEV 186
AG YIN S V + PFGG +MS + +Y ++
Sbjct: 449 AGTCYINTYSISPV--EVPFGGYKMSGFGRENGQATVDYYSQL 489
>d1wnda_ c.82.1.1 (A:) Putative betaine aldehyde dehydrogenase YdcW
{Escherichia coli [TaxId: 562]}
Length = 474
Score = 99.1 bits (246), Expect = 4e-23
Identities = 41/163 (25%), Positives = 74/163 (45%), Gaps = 8/163 (4%)
Query: 203 AVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVNFVPA 261
+++P+N+ + PAL G+ V+ KPS+ L+ + ++ + P GVVN +
Sbjct: 144 SIAPWNYPLMMAAWKLAPALAAGNCVVLKPSEITPLTALKLAEL-AKDIFPAGVVNILFG 202
Query: 262 DGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGGKNFHFIH 321
G GD +T P + ++ TGS+ T + + + R E GGK +
Sbjct: 203 RGKTVGDPLTGHPKVRMVSLTGSIATGEHII------SHTASSIKRTHMELGGKAPVIVF 256
Query: 322 ASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLFCFCSCF 364
A++E+VV G + GQ C+A R+Y + ++
Sbjct: 257 DDADIEAVVEGVRTFGYYNAGQDCTAACRIYAQKGIYDTLVEK 299
Score = 35.6 bits (81), Expect = 0.010
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 11/43 (25%)
Query: 153 AGNYYINDKSTGSVVGQQPFGGGRMS---------ALTFYLEV 186
G ++N +V + P GG ++S L Y V
Sbjct: 427 YGCTWVNTHFM--LVSEMPHGGQKLSGYGKDMSLYGLEDYTVV 467
>d1euha_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Streptococcus mutans [TaxId: 1309]}
Length = 474
Score = 89.2 bits (220), Expect = 8e-20
Identities = 50/167 (29%), Positives = 73/167 (43%), Gaps = 9/167 (5%)
Query: 199 GFVAAVSPFNFTAIGGNLAYTPALMGSSVLWKPSDTAL-LSNYTIYKIMIEAGVPPGVVN 257
G V A+SPFN+ PAL+ +V+ T +S + + EAG+P GV N
Sbjct: 144 GLVLAISPFNYPVNLAGSKIAPALIAGNVIAFKPPTQGSISGLLLAEAFAEAGLPAGVFN 203
Query: 258 FVPADGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGGKNF 317
+ G GD I + INFTGS +G+ I ++ E GGK+
Sbjct: 204 TITGRGSEIGDYIVEHQAVNFINFTGST--------GIGERIGKMAGMRPIMLELGGKDS 255
Query: 318 HFIHASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLFCFCSCF 364
+ A++E I AF Y GQ+C+A R+ V ES+
Sbjct: 256 AIVLEDADLELTAKNIIAGAFGYSGQRCTAVKRVLVMESVADELVEK 302
Score = 36.0 bits (82), Expect = 0.007
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 10/43 (23%)
Query: 153 AGNYYINDKSTGSVVGQQPFGGGRMS---------ALTFYLEV 186
G +IN+K T PF G + S ++ V
Sbjct: 425 VGTVHINNK-TQRGTDNFPFLGAKKSGAGIQGVKYSIEAMTTV 466
>d1uzba_ c.82.1.1 (A:) 1-pyrroline-5-carboxylate dehydrogenase
{Thermus thermophilus [TaxId: 274]}
Length = 516
Score = 79.9 bits (196), Expect = 8e-17
Identities = 64/345 (18%), Positives = 117/345 (33%), Gaps = 24/345 (6%)
Query: 35 PEWTYLPGSKEREAITAALKRVGSTV-EEVPIVIGSKEYKTEHVQYQPMVSLHVQYQPMP 93
P T+ R A+ AL+RV P+ IG + T+ + ++ P
Sbjct: 10 PIETFQTEE-ARRAMREALRRVREEFGRHYPLYIGGEWVDTK--ERMVSLN--------P 58
Query: 94 HNHKKKIAKFYYATP--------VLKSALDIVSSLCPYEKNSVGLLI--NTEVLHDDLYF 143
+ + A A +++ + L +L
Sbjct: 59 SAPSEVVGTTAKAGKAEAEAALEAAWKAFKTWKDWPQEDRSRLLLKAAALMRRRKRELEA 118
Query: 144 RCLDDLKYAAGNYYINDKSTGSVVGQQPFGGGRMSALTFYLEVLASNLGRGEGLD-GFVA 202
+ ++ + + R + + G
Sbjct: 119 TLVYEVGKNWVEASADVAEAIDFIEYYARAALRYRYPAVEVVPYPGEDNESFYVPLGAGV 178
Query: 203 AVSPFNFTAIGGNLAYTPALMGSSVLWKPSDTAL-LSNYTIYKIMIEAGVPPGVVNFVPA 261
++P+NF + + + + +++I EAG PPGVVNF+P
Sbjct: 179 VIAPWNFPVAIFTGMIVGPVAVGNTVIAKPAEDAVVVGAKVFEIFHEAGFPPGVVNFLPG 238
Query: 262 DGPVFGDTITASPYLAGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGGKNFHFIH 321
G G + P + INFTGS+ +++ G+ F R E GGKN +
Sbjct: 239 VGEEVGAYLVEHPRIRFINFTGSLEVGLKIYEAAGRLAPGQTWFKRAYVETGGKNAIIVD 298
Query: 322 ASANVESVVNGTIRSAFEYCGQKCSACSRMYVPESLFCFCSCFLL 366
+A+ + G + SA+ + GQKCSA SR+ + + + +L
Sbjct: 299 ETADFDLAAEGVVVSAYGFQGQKCSAASRLILTQGAYEPVLERVL 343
Score = 42.9 bits (100), Expect = 5e-05
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 10/44 (22%)
Query: 153 AGNYYINDKSTGSVVGQQPFGG----------GRMSALTFYLEV 186
GN Y N K TG++VG QPFGG G + L +LE+
Sbjct: 466 VGNLYFNRKITGALVGVQPFGGFKLSGTNAKTGALDYLRLFLEM 509
>d1ad3a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 446
Score = 58.4 bits (140), Expect = 5e-10
Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 6/81 (7%)
Query: 281 FTGSVPTFNRLWLQVGKNINVYKNFPRLIGECGGKNFHFIHASANVESVVNGTIRSAFEY 340
+TGS + K++ + E GGK+ ++ +++ F
Sbjct: 184 YTGSTAVGKIVMAAAAKHLT------PVTLELGGKSPCYVDKDCDLDVACRRIAWGKFMN 237
Query: 341 CGQKCSACSRMYVPESLFCFC 361
GQ C A + S+
Sbjct: 238 SGQTCVAPDYILCDPSIQNQI 258
Score = 40.7 bits (94), Expect = 3e-04
Identities = 12/48 (25%), Positives = 14/48 (29%), Gaps = 11/48 (22%)
Query: 153 AGNYYINDKSTGSVVGQQPFGGGRMSALTFYLEVLASNLGRGEGLDGF 200
+G ND V PFGG S +G G F
Sbjct: 381 SGGVTANDVIVHITVPTLPFGGVGNSG-----------MGAYHGKKSF 417
>d1ez0a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Vibrio harveyi [TaxId: 669]}
Length = 504
Score = 42.4 bits (98), Expect = 7e-05
Identities = 15/65 (23%), Positives = 22/65 (33%), Gaps = 8/65 (12%)
Query: 143 FRCLDDLKYAAGNYYINDKSTGSVVGQQPFGGGRMSALTFYLEVLASNLGRG--EGLDGF 200
+ + L+ AG N TG VG GG A T S E + +
Sbjct: 416 SQLIPRLEEIAGRLVFNGWPTGVEVGYAMVHGGPYPASTH------SASTSVGAEAIHRW 469
Query: 201 VAAVS 205
+ V+
Sbjct: 470 LRPVA 474
>d1ky8a_ c.82.1.1 (A:) Non-phosphorylating
glyceraldehyde-3-phosphate dehydrogenase GapN {Archaeon
Thermoproteus tenax [TaxId: 2271]}
Length = 499
Score = 40.3 bits (93), Expect = 3e-04
Identities = 12/59 (20%), Positives = 26/59 (44%)
Query: 294 QVGKNINVYKNFPRLIGECGGKNFHFIHASANVESVVNGTIRSAFEYCGQKCSACSRMY 352
+VG+ + + + E GG + + A+++ + R + Y GQ+C A +
Sbjct: 244 EVGERVVKVGGVKQYVMELGGGDPAIVLEDADLDLAADKIARGIYSYAGQRCDAIKLVL 302
Score = 36.5 bits (83), Expect = 0.005
Identities = 12/48 (25%), Positives = 15/48 (31%), Gaps = 12/48 (25%)
Query: 153 AGNYYINDKSTGSVVGQQPFGGGRMSALTFYLEVLASNLGRGEGLDGF 200
G YIND + G PFGG + S + R
Sbjct: 442 VGAIYINDMPRHGI-GYYPFGGRKKSG-----------VFREGIGYAV 477
>d1a0tp_ f.4.3.2 (P:) Sucrose-specific porin {Enterobacterium
(Salmonella typhimurium) [TaxId: 90371]}
Length = 413
Score = 29.6 bits (66), Expect = 0.73
Identities = 24/145 (16%), Positives = 39/145 (26%), Gaps = 27/145 (18%)
Query: 155 NYYINDKSTGSVVGQQPFGGGRMSALTFYLEVLASNLGRGEGLDGFVAAVSPFNFTAIGG 214
+ + TG + + G S + Y N G + V G
Sbjct: 130 SDVVFLAGTGGGIYDVKWNDGLRSNFSLY----GRNFGDIDDSSNSVQNYI-LTMNHFAG 184
Query: 215 NLAYTPALMGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASP 274
L +M S + K +D SN + A G + A
Sbjct: 185 PLQ----MMVSGLRAKDNDERKDSNGNL------------------AKGDAANTGVHALL 222
Query: 275 YLAGINFTGSVPTFNRLWLQVGKNI 299
L +F G ++ L G +
Sbjct: 223 GLHNDSFYGLRDGSSKTALLYGHGL 247
>d2im9a1 d.3.1.13 (A:49-352) Hypothetical protein Lpg0564
{Legionella pneumophila [TaxId: 446]}
Length = 305
Score = 28.1 bits (62), Expect = 1.8
Identities = 20/137 (14%), Positives = 40/137 (29%), Gaps = 16/137 (11%)
Query: 211 AIGGNLAYTPALMGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTI 270
+I AL ++++ KP + TI + + + A G ++
Sbjct: 132 SIRNEKKQPVALYANALINKPQWYNHKTIDTIRLQKQDKNEQEKRLVELKAKGKTLETSL 191
Query: 271 TASPYL--AGINFTGSVPTFNRLWLQVGKNINVYKNFPRLIGECG--------------G 314
+ PY+ + + G I + + L + G
Sbjct: 192 SNVPYIPFTALFSENKPNLHLFSQIPNGAVIEIIRPNWDLRQQIGTELDISHLGFAIWIN 251
Query: 315 KNFHFIHASANVESVVN 331
F AS+ VV+
Sbjct: 252 NELFFRQASSQYGKVVD 268
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
(CMLE) {Acinetobacter calcoaceticus [TaxId: 471]}
Length = 444
Score = 26.6 bits (57), Expect = 7.7
Identities = 10/131 (7%), Positives = 32/131 (24%), Gaps = 4/131 (3%)
Query: 298 NINVYKNFPRLIGECGGKNFHFIHASANVESVVNGTIRS----AFEYCGQKCSACSRMYV 353
I K ++ + ++H A + +++ A + C +
Sbjct: 77 AIPFVKQLTAIVKDADEDAARYVHWGATSQDILDTACILQCRDALAIVQNQVQQCYETAL 136
Query: 354 PESLFCFCSCFLLLFLFSASVPVFCFCSCFLLLFLFSTSVPVFCFCSCFLLLFLFSASVP 413
++ + ++P+ F + +L+ +V
Sbjct: 137 SQAQTYRHQVMMGRTWLQQALPITLGHKLARWASAFKRDLDRINAIKARVLVAQLGGAVG 196
Query: 414 VFCFCGNSAWY 424
+
Sbjct: 197 SLASLQDQGSI 207
>d1vcoa2 c.37.1.10 (A:11-282) CTP synthase PyrG, N-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 272
Score = 26.0 bits (57), Expect = 8.5
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 10/51 (19%)
Query: 63 VPIVIGSKEYKTEHVQY----------QPMVSLHVQYQPMPHNHKKKIAKF 103
VP + S+E+KT+ Q+ QP + + +P+P ++K+A F
Sbjct: 178 VPYLETSEEFKTKPTQHSVATLRGVGIQPDILVLRSARPVPEEVRRKVALF 228
>d1wl7a1 b.67.2.1 (A:2-313) Arabinanase-TS {Bacillus
thermodenitrificans [TaxId: 33940]}
Length = 312
Score = 26.1 bits (56), Expect = 8.7
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 252 PPGVVNFVPADGPVFGDTITASPYL 276
P G VNF D + GD P +
Sbjct: 5 PFGNVNFYEMDWSLKGDLWAHDPVI 29
>d1oxda_ d.22.1.1 (A:) Green fluorescent protein, GFP {Jellyfish
(Aequorea victoria) [TaxId: 6100]}
Length = 227
Score = 25.9 bits (57), Expect = 9.0
Identities = 5/43 (11%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Query: 232 SDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASP 274
++ + + +I ++ ++F DG + G + +
Sbjct: 108 AEVKFEGDTLVNRIELKG------IDF-KEDGNILGHKLEYNY 143
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.140 0.445
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,634,554
Number of extensions: 77414
Number of successful extensions: 239
Number of sequences better than 10.0: 1
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 28
Length of query: 428
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 340
Effective length of database: 1,199,356
Effective search space: 407781040
Effective search space used: 407781040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.7 bits)