RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1961
(147 letters)
>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino
acid metabolism, proline inhibition, oxidoreductase;
HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A*
3v9j_A* 3v9g_A 3v9h_A 3v9i_A
Length = 563
Score = 256 bits (655), Expect = 3e-84
Identities = 90/149 (60%), Positives = 113/149 (75%), Gaps = 5/149 (3%)
Query: 3 EIIGGGQYDESCGYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTDS 62
I+ GGQ +ES GY+++P I+++KDP E IM EEIFGPVLT++VYPD +TLK+V +
Sbjct: 414 SILAGGQCNESVGYYVEPCIIESKDPQEPIMKEEIFGPVLTVYVYPDDKYRETLKLVDST 473
Query: 63 TPYALTGAVFAEDESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQPFGG-----TNDKAG 117
T Y LTGAVFA+D++ + L+ AAGN+YINDKSTGSVVGQQPFGG TNDK G
Sbjct: 474 TSYGLTGAVFAQDKAIVQEATRMLRNAAGNFYINDKSTGSVVGQQPFGGARASGTNDKPG 533
Query: 118 GPHYVLRWATPQSIKETFVPLTEWKYPYM 146
GPHY+LRW +PQ IKET PL +W+Y YM
Sbjct: 534 GPHYILRWTSPQVIKETHKPLGDWRYSYM 562
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox
control, apoptosis, NAD binding, oxidoreductase,
PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Length = 538
Score = 166 bits (423), Expect = 4e-50
Identities = 53/148 (35%), Positives = 78/148 (52%), Gaps = 10/148 (6%)
Query: 3 EIIGGGQYDESCGYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTDS 62
++ GG+ D S G+FIQPTI+ DP IM EEIFGPV+ D D L+I ++
Sbjct: 384 RLMTGGEGDSSTGFFIQPTIIADLDPEAVIMQEEIFGPVVAFSKA--NDFDHALEIA-NN 440
Query: 63 TPYALTGAVFAEDESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQPFGG-----TNDKAG 117
T Y LTGAV + + ++ + GN Y N TG++VG PFGG T+ KAG
Sbjct: 441 TEYGLTGAVITRNRAHIEQAKREFH--VGNLYFNRNCTGAIVGYHPFGGFKMSGTDSKAG 498
Query: 118 GPHYVLRWATPQSIKETFVPLTEWKYPY 145
GP Y+ +++ E + ++ +
Sbjct: 499 GPDYLALHMQAKTVSEMYAENLYFQSHH 526
>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase;
proline utilization A, PUTA, flavoenzyme, structural
genomic biology; HET: FAD MES; 2.20A {Geobacter
sulfurreducens}
Length = 1026
Score = 134 bits (339), Expect = 2e-37
Identities = 47/135 (34%), Positives = 71/135 (52%), Gaps = 10/135 (7%)
Query: 4 IIGGGQYDESCGYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTDST 63
++ GYF+ TI+ P +I EEIFGPVL + KD D+ ++ +ST
Sbjct: 879 VLYESPVPAGEGYFVPMTIIGGIKPEHRIAQEEIFGPVLAVMRA--KDFDQAIEWA-NST 935
Query: 64 PYALTGAVFAEDESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQPFGG-----TNDKAGG 118
+ALTG +F+ + + + GN YIN +TG++V +QPFGG KAGG
Sbjct: 936 QFALTGGIFSRSPEHLAKARREFR--VGNLYINRNNTGALVERQPFGGARMSGVGTKAGG 993
Query: 119 PHYVLRWATPQSIKE 133
P Y+L + P+ + E
Sbjct: 994 PDYLLHFMDPRVVTE 1008
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme,
1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase;
HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Length = 1001
Score = 129 bits (327), Expect = 6e-36
Identities = 47/133 (35%), Positives = 74/133 (55%), Gaps = 12/133 (9%)
Query: 4 IIGGGQYDESCGYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTDST 63
+ G E G F+ P I + + +TEE+FGP+L + Y ++L++ L+ + + T
Sbjct: 858 LHFAGPAPE--GCFVAPHIFELTEA--GQLTEEVFGPILHVVRYRPENLERVLRAI-ERT 912
Query: 64 PYALTGAVFAEDESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQPFGG-----TNDKAGG 118
Y LT V + + + +D ++ GN Y+N G+VVG QPFGG T KAGG
Sbjct: 913 GYGLTLGVHSRIDDSIEAIIDRVQ--VGNIYVNRNMIGAVVGVQPFGGNGLSGTGPKAGG 970
Query: 119 PHYVLRWATPQSI 131
PHY+ R+AT Q++
Sbjct: 971 PHYLARFATEQTV 983
>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 1.4A {Thermus thermophilus} SCOP:
c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A*
2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A
2iy6_A* 2j40_A* 2j5n_A*
Length = 516
Score = 125 bits (316), Expect = 8e-35
Identities = 51/134 (38%), Positives = 70/134 (52%), Gaps = 10/134 (7%)
Query: 7 GGQYDESCGYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTDSTPYA 66
GG+ E GYFI PT+ P +I EEIFGPVL++ KD + L++ D TPY
Sbjct: 388 GGKRLEGEGYFIAPTVFTEVPPKARIAQEEIFGPVLSVIRV--KDFAEALEVAND-TPYG 444
Query: 67 LTGAVFAEDESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQPFGG-----TNDKAGGPHY 121
LTG V++ + + GN Y N K TG++VG QPFGG TN K G Y
Sbjct: 445 LTGGVYSRKREHLEWARREFH--VGNLYFNRKITGALVGVQPFGGFKLSGTNAKTGALDY 502
Query: 122 VLRWATPQSIKETF 135
+ + +++ E F
Sbjct: 503 LRLFLEMKAVAERF 516
>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann
fold, oxidoreductase; 1.48A {Homo sapiens} PDB: 3szb_A*
1ad3_A*
Length = 469
Score = 74.5 bits (184), Expect = 1e-16
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 8/110 (7%)
Query: 3 EIIGGGQYDESCGYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTD- 61
++ GG D + +I PTI+ DP +M EEIFGPVL I + L++ ++ +
Sbjct: 318 KVAYGGTGDAA-TRYIAPTILTDVDPQSPVMQEEIFGPVLPIVCV--RSLEEAIQFINQR 374
Query: 62 STPYALTGAVFAEDESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQPFGG 111
P AL +F+ ++ K+ + + ++G ND + PFGG
Sbjct: 375 EKPLAL--YMFSSNDKVIKKMIA--ETSSGGVAANDVIVHITLHSLPFGG 420
>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE; 2.40A {Staphylococcus aureus}
Length = 478
Score = 71.8 bits (177), Expect = 1e-15
Identities = 35/97 (36%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 15 GYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTDSTPYALTGAVFAE 74
GYF +PTI D I EEIFGPV+++ Y DLD+ ++I D T Y L G V +
Sbjct: 361 GYFARPTIFINVDNQMTIAQEEIFGPVMSVITY--NDLDEAIQIAND-TKYGLAGYVIGK 417
Query: 75 DESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQPFGG 111
D+ + ++ AG IN PFGG
Sbjct: 418 DKETLHKVARSIE--AGTVEIN---EAGRKPDLPFGG 449
>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.00A {Bartonella henselae}
Length = 497
Score = 71.4 bits (176), Expect = 1e-15
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Query: 15 GYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTDSTPYALTGAVFAE 74
GY+++PT+ P +I EEIFGPVL++ + D+ + + D T Y LT + ++
Sbjct: 382 GYYVRPTVFADVKPHMRIFREEIFGPVLSLLPF--NTEDEAVTLAND-TEYGLTNYIQSQ 438
Query: 75 DESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQPFGG 111
D S +R ++ +G +N + G FGG
Sbjct: 439 DRSKCRRIAAQVR--SGMVEVN---GHELPGGSYFGG 470
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc,
structural genomics, NEW YORK structura genomics
research consortium, tetramer; 2.00A {Sinorhizobium
meliloti}
Length = 528
Score = 71.1 bits (175), Expect = 2e-15
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 7/108 (6%)
Query: 4 IIGGGQYDESCGYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTDST 63
++GG + G + PT+ P I EEIFGPVL+ + K D+ + + T
Sbjct: 370 LLGGERIGREAGLYYAPTVFAGVTPDMSIAREEIFGPVLSTLTF--KTADEAVALANA-T 426
Query: 64 PYALTGAVFAEDESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQPFGG 111
+ L+ +V++ + + + ++ AG +IN G+ + P GG
Sbjct: 427 EFGLSASVWSTNLETALQTIRRIR--AGRCWINSVIDGTP--ELPIGG 470
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH,
oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A*
2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A*
3rhl_A*
Length = 517
Score = 70.7 bits (174), Expect = 2e-15
Identities = 35/108 (32%), Positives = 48/108 (44%), Gaps = 6/108 (5%)
Query: 4 IIGGGQYDESCGYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTDST 63
+ GG Q G+F QPT+ + I EE FGP++ I + D D+D L T
Sbjct: 388 VCGGNQVPRP-GFFFQPTVFTDVEDHMYIAKEESFGPIMIISRFADGDVDAVLSRANA-T 445
Query: 64 PYALTGAVFAEDESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQPFGG 111
+ L VF D + D L+ AG +IN + V PFGG
Sbjct: 446 EFGLASGVFTRDINKALYVSDKLQ--AGTVFINTYNKTDV--AAPFGG 489
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate
dehydrogenase; oxidoreductase; 1.82A {Streptococcus
mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A*
2qe0_A* 2esd_A* 1qi1_A*
Length = 475
Score = 70.6 bits (174), Expect = 2e-15
Identities = 32/150 (21%), Positives = 53/150 (35%), Gaps = 28/150 (18%)
Query: 3 EIIGGGQYDESCGYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTDS 62
+ + + G I P + ++ EE FGPVL I +++ ++I
Sbjct: 347 TALTEIKRE---GNLICPILFDKVTTDMRLAWEEPFGPVLPIIRV--TSVEEAIEISNK- 400
Query: 63 TPYALTGAVFAEDESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQPFGGTNDKA-G---- 117
+ Y L ++F D + L+ G +IN+K+ PF G K G
Sbjct: 401 SEYGLQASIFTNDFPRAFGIAEQLEV--GTVHINNKTQRGTD-NFPFLGA--KKSGAGIQ 455
Query: 118 GPHYVLRWATPQSIKETFVPLTEWKYPYMG 147
G Y SI+ +T K
Sbjct: 456 GVKY--------SIEA----MTTVKSVVFD 473
>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic,
oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP:
c.82.1.1 PDB: 1o9j_A* 1bi9_A*
Length = 501
Score = 69.9 bits (172), Expect = 4e-15
Identities = 38/108 (35%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Query: 4 IIGGGQYDESCGYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTDST 63
GGG + GYFIQPT+ +I EEIFGPV I + K LD +K + T
Sbjct: 369 ECGGGPWGN-KGYFIQPTVFSDVTDDMRIAKEEIFGPVQQIMKF--KSLDDVIKRANN-T 424
Query: 64 PYALTGAVFAEDESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQPFGG 111
Y L+ +F D L+ +G ++N S S Q PFGG
Sbjct: 425 FYGLSAGIFTNDIDKAITVSSALQ--SGTVWVNCYSVVSA--QCPFGG 468
>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein
structure initiative, nysgrc, P biology; HET: MSE NAD;
2.01A {Sinorhizobium meliloti} PDB: 4dal_A*
Length = 498
Score = 69.5 bits (171), Expect = 6e-15
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
Query: 3 EIIGGGQYDESCGYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTDS 62
EI GG+ G+F QPT+V ++I+ E+FGPV+++ + D + D
Sbjct: 368 EITTGGRTGSDEGFFFQPTVVAGATQEDEIVRREVFGPVVSVTRF--TGKDDAVAWAND- 424
Query: 63 TPYALTGAVFAEDESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQPFGG 111
+ Y L +V+ +D S R L+ G +IN + + P GG
Sbjct: 425 SDYGLASSVWTKDISKAMRAASRLQ--YGCTWINT--HFMLTNEMPHGG 469
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH,
isomerization, oxidoreductase; HET: NAD; 1.42A {Homo
sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A*
1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A*
3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A*
3n81_A 3n82_A* 3n83_A* ...
Length = 500
Score = 69.5 bits (171), Expect = 7e-15
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 7/109 (6%)
Query: 3 EIIGGGQYDESCGYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTDS 62
+++ GG GYFIQPT+ I EEIFGPV+ I + K +++ + +
Sbjct: 366 KLLCGGGIAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKF--KTIEEVVGRANN- 422
Query: 63 TPYALTGAVFAEDESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQPFGG 111
+ Y L AVF +D L+ AG ++N Q PFGG
Sbjct: 423 STYGLAAAVFTKDLDKANYLSQALQ--AGTVWVNCYDVFGA--QSPFGG 467
>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural
genomics, protein structure initiative, dehydroge
PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*
Length = 505
Score = 69.1 bits (170), Expect = 9e-15
Identities = 32/150 (21%), Positives = 55/150 (36%), Gaps = 28/150 (18%)
Query: 3 EIIGGGQYDESCGYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTDS 62
++ G + G + PT++ P ++ EE FGPVL I KD ++ + +
Sbjct: 356 TLLSGNKRQ---GNLLSPTLLDDVTPAMRVAWEEPFGPVLPIIRV--KDANEAISLSNQ- 409
Query: 63 TPYALTGAVFAEDESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQPFGGTNDKA-G---- 117
+ Y L ++F +D L+ G +IN K+ PF G K G
Sbjct: 410 SDYGLQASIFTKDTDRAINIGKHLEV--GTVHINAKTERGPD-HFPFLGV--KKSGLGVQ 464
Query: 118 GPHYVLRWATPQSIKETFVPLTEWKYPYMG 147
G S+ +T + +
Sbjct: 465 GIKP--------SLLS----MTRERVTVLN 482
>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase,
oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo
sapiens} PDB: 2jg7_A*
Length = 500
Score = 68.3 bits (168), Expect = 1e-14
Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 8/118 (6%)
Query: 3 EIIGGGQYDESCGYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTDS 62
++ GG+ + G +++PTIV I E F P+L +F + ++ ++ +
Sbjct: 367 TVVYGGKVMDRPGNYVEPTIVTGLGHDASIAHTETFAPILYVFKF--QNEEEVFAWNNE- 423
Query: 63 TPYALTGAVFAED--ESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQPFGGTNDKAGG 118
L+ ++F +D F+ G +N ++G+ +G FGG GG
Sbjct: 424 VKQGLSSSIFTKDLGRIFRWLGPKGSDC--GIVNVNIPTSGAEIG-GAFGGEKHTGGG 478
>1ez0_A ALDH, aldehyde dehydrogenase; nucleotide binding domain, NADP+,
oxidoreductase; HET: NAP; 2.10A {Vibrio harveyi} SCOP:
c.82.1.1 PDB: 1eyy_A*
Length = 510
Score = 68.1 bits (167), Expect = 2e-14
Identities = 26/109 (23%), Positives = 38/109 (34%), Gaps = 9/109 (8%)
Query: 6 GGGQYDESCGYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTDSTPY 65
+ F+ + K P EEIFGP I V +++ L +
Sbjct: 350 QAESPCVASALFVTSSENWRKHP---AWEEEIFGPQSLIVVC--ENVADMLSLSEM-LAG 403
Query: 66 ALTGAVFAE--DESFQKRCLDDLKYAAGNYYINDKSTGSVVGQ-QPFGG 111
+LT + A D + + L+ AG N TG VG GG
Sbjct: 404 SLTATIHATEEDYPQVSQLIPRLEEIAGRLVFNGWPTGVEVGYAMVHGG 452
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics,
PSI-2, protein STR initiative; HET: NAD GOL; 1.80A
{Mycobacterium tuberculosis}
Length = 495
Score = 67.9 bits (167), Expect = 2e-14
Identities = 36/109 (33%), Positives = 50/109 (45%), Gaps = 9/109 (8%)
Query: 4 IIGGGQYDE-SCGYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTDS 62
+ GGG+ + G+FIQPT+ D I EEIFGPVL I Y + + I D
Sbjct: 354 VCGGGRPEGLDNGFFIQPTVFADVDNKMTIAQEEIFGPVLAIIPY--DTEEDAIAIAND- 410
Query: 63 TPYALTGAVFAEDESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQPFGG 111
+ Y L G+V+ D + ++ G Y IN + PFGG
Sbjct: 411 SVYGLAGSVWTTDVPKGIKISQQIR--TGTYGIN---WYAFDPGSPFGG 454
>3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.57A {Corynebacterium glutamicum}
Length = 508
Score = 67.6 bits (166), Expect = 2e-14
Identities = 28/144 (19%), Positives = 57/144 (39%), Gaps = 18/144 (12%)
Query: 3 EIIGGGQYDESCGYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTDS 62
+ G + G + P + +I EEIFGP++++ D ++
Sbjct: 358 TVQVEGPIE---GRLVHPHVFSDVTSDMEIAREEIFGPLISVLKA--DDEAHAAELANA- 411
Query: 63 TPYALTGAVFAEDESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQPFGGTNDKAGGPHYV 122
+ + L+ AV+++D + + G +IND + FGG+ K G +
Sbjct: 412 SDFGLSAAVWSKDIDRAAQFALQIDS--GMVHINDLTVNDEP-HVMFGGS--KNSG---L 463
Query: 123 LRWATPQSIKETFVPLTEWKYPYM 146
R+ +I+E T ++ +
Sbjct: 464 GRFNGDWAIEE----FTTDRWIGI 483
>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH,
glucose 1-phosphate, glycolysis, regulation, catatysis,
oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax}
SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A*
1uxu_A* 1uxv_A* 1ky8_A*
Length = 501
Score = 67.6 bits (166), Expect = 3e-14
Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 11/112 (9%)
Query: 3 EIIGGGQYDESCGYFIQPTIVQTK---DPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIV 59
++ GG+ ++QPT V+ + E+F PV KDLD+ +++
Sbjct: 361 RVLAGGRRLG--PTYVQPTFVEAPADRVKDMVLYKREVFAPVALAVEV--KDLDQAIELA 416
Query: 60 TDSTPYALTGAVFAEDESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQPFGG 111
PY L AVF D +R + L+ G YIND +G PFGG
Sbjct: 417 NG-RPYGLDAAVFGRDVVKIRRAVRLLEV--GAIYINDMPRHG-IGYYPFGG 464
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence,
kinetics, oxidor; 2.10A {Escherichia coli} SCOP:
c.82.1.1 PDB: 1wnb_A
Length = 495
Score = 67.6 bits (166), Expect = 3e-14
Identities = 26/109 (23%), Positives = 55/109 (50%), Gaps = 7/109 (6%)
Query: 3 EIIGGGQYDESCGYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTDS 62
++I GG+ + GY+ PT++ + I+ +E+FGPV+++ + + ++ + D
Sbjct: 366 KVITGGEKRKGNGYYYAPTLLAGALQDDAIVQKEVFGPVVSVTPF--DNEEQVVNWAND- 422
Query: 63 TPYALTGAVFAEDESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQPFGG 111
+ Y L +V+ +D R L+ G ++N + +V + P GG
Sbjct: 423 SQYGLASSVWTKDVGRAHRVSARLQ--YGCTWVN--THFMLVSEMPHGG 467
>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti
deseases, NAD, oxidoreductase, PSI; 1.70A
{Staphylococcus aureus} PDB: 3fg0_A*
Length = 520
Score = 67.2 bits (165), Expect = 4e-14
Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 10/111 (9%)
Query: 4 IIGGGQYDESC---GYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVT 60
+GG + D G F +PT++ D +I+ EE+FGPV+T+ + + + +++
Sbjct: 379 AVGGKRPDRDDLKDGLFFEPTVITNCDTSMRIVQEEVFGPVVTVEGF--ETEQEAIQLAN 436
Query: 61 DSTPYALTGAVFAEDESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQPFGG 111
D + Y L GAVF++D +R + LK G +IND Q P+GG
Sbjct: 437 D-SIYGLAGAVFSKDIGKAQRVANKLK--LGTVWIND--FHPYFAQAPWGG 482
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine
aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD;
2.15A {Pisum sativum} PDB: 3iwk_A* 4a0m_A*
Length = 503
Score = 66.8 bits (164), Expect = 6e-14
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 8/109 (7%)
Query: 4 IIGGGQYDE-SCGYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTDS 62
+ GG + + G+FI+PTI+ +I EE+FGPVL + + ++ + + D
Sbjct: 360 LTGGSRPEHLKKGFFIEPTIITDVTTNMQIWREEVFGPVLCVKTF--STEEEAIDLAND- 416
Query: 63 TPYALTGAVFAEDESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQPFGG 111
T Y L AV + D +R K AG ++N + Q P+GG
Sbjct: 417 TVYGLGAAVISNDLERCERVTKAFK--AGIVWVNC--SQPCFTQAPWGG 461
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
NAD; 1.82A {Pseudomonas aeruginosa}
Length = 490
Score = 66.4 bits (163), Expect = 6e-14
Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 9/118 (7%)
Query: 3 EIIGGGQYDESCGYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTDS 62
+ + + P I+ + + EE FGP+L + Y D ++
Sbjct: 348 QPLLAMTQPIDGAALLTPGILDV-SAVAERPDEEFFGPLLQVIRY--SDFAAAIREANA- 403
Query: 63 TPYALTGAVFAEDESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQPFGGTNDKAGGPH 120
T Y L + ++ ++ L + + AG N + TG+ PFGG A G H
Sbjct: 404 TQYGLAAGLLSDSRERFEQFLVESR--AGIVNWNKQLTGAAS-SAPFGGI--GASGNH 456
>2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP,
nucleotide-binding; HET: NAP; 1.40A {Burkholderia
xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A*
Length = 534
Score = 66.6 bits (163), Expect = 7e-14
Identities = 18/131 (13%), Positives = 39/131 (29%), Gaps = 25/131 (19%)
Query: 3 EIIGGGQYDESC-----GYFIQPTIVQTKDPLE--KIMTEEIFGPVLTIFVYPDKDLDKT 55
+ P + DP + E+FGPV ++ Y
Sbjct: 363 LAYDSSAVPLIDADANIAACVAPHLFVVNDPDNATLLHDVEVFGPVASVAPYRVTTDTNA 422
Query: 56 ------LKIVTDSTPYALTGAVFAEDESFQKRCLDDLKYAAGNYYIND---------KST 100
+ + +L ++++ D++ R +L A + ++
Sbjct: 423 LPEAHAVALARR-GQGSLVASIYSNDDAHLGRLALEL--ADSHGRVHAISPSVQHSQTGH 479
Query: 101 GSVVGQQPFGG 111
G+V+ GG
Sbjct: 480 GNVMPMSLHGG 490
>2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP
complex, oxidoreductase; HET: NAP CSO; 2.10A
{Pseudomonas aeruginosa} PDB: 2wme_A* 2wox_A* 3zqa_A*
2xdr_A*
Length = 490
Score = 66.0 bits (162), Expect = 1e-13
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 10/111 (9%)
Query: 4 IIGGGQYDESC---GYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVT 60
+ GG + + G ++ PT+ I+ EEIFGPV++I VY D D+ ++
Sbjct: 352 LCGGERVTDGAFGKGAYVAPTVFTDCRDDMTIVREEIFGPVMSILVY--DDEDEAIRRAN 409
Query: 61 DSTPYALTGAVFAEDESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQPFGG 111
D T Y L V +D + R + L+ AG +IN + P GG
Sbjct: 410 D-TEYGLAAGVVTQDLARAHRAIHRLE--AGICWINTWGESPA--EMPVGG 455
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Length = 517
Score = 65.7 bits (161), Expect = 1e-13
Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 4 IIGGGQYDESC--GYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTD 61
I GGG + G ++QPT+ I EEIFGPV+ + + D D+ L
Sbjct: 358 ITGGGIPNNVAGEGAYVQPTVFADVTDDMTIAREEIFGPVMCVLDF--DDEDEVLARANA 415
Query: 62 STPYALTGAVFAEDESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQPFGG 111
T + L G VF D + R +D L+ AG +IN + + PFGG
Sbjct: 416 -TEFGLAGGVFTADLARAHRVVDGLE--AGTLWIN--TYNLCPVEIPFGG 460
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex,
oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB:
2ilu_A* 2hg2_A* 2opx_A*
Length = 479
Score = 65.2 bits (160), Expect = 2e-13
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 3 EIIGGGQYDESCGYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTDS 62
+ GG+ E GY+ PT++ IM EE FGPVL + + L+ + + D
Sbjct: 350 RVAFGGKAVEGKGYYYPPTLLLDVRQEMSIMHEETFGPVLPVVAF--DTLEDAISMAND- 406
Query: 63 TPYALTGAVFAEDESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQPFGG 111
+ Y LT +++ ++ + + + LK+ G YIN ++ ++ G G
Sbjct: 407 SDYGLTSSIYTQNLNVAMKAIKGLKF--GETYINRENFEAMQG--FHAG 451
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde
oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB:
1bpw_A*
Length = 503
Score = 64.9 bits (159), Expect = 3e-13
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 12/113 (10%)
Query: 4 IIGGGQYDESC-----GYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKI 58
+ GG S GYF+ P ++ + EEIFGPV+++ + ++ L+
Sbjct: 363 LCGGEPLTPSDPKLKNGYFMSPCVLDNCRDDMTCVKEEIFGPVMSVLPF--DTEEEVLQR 420
Query: 59 VTDSTPYALTGAVFAEDESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQPFGG 111
+ T + L VF D S R +L+ AG YIN + + PFGG
Sbjct: 421 ANN-TTFGLASGVFTRDISRAHRVAANLE--AGTCYIN--TYSISPVEVPFGG 468
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde
dehyd adduct, covalent catalysis, mandelate racemase
pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB:
3lv1_A*
Length = 457
Score = 64.3 bits (157), Expect = 4e-13
Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 5/110 (4%)
Query: 2 SEIIGGGQYDESCGYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTD 61
+++ G Q D S + T+V + + +M+EE+FGP+L + + + + V
Sbjct: 325 GQVLVGSQADVS-KRALSATVVDGVEWNDPLMSEELFGPILPVLEF--DSVRTAIDQVNK 381
Query: 62 STPYALTGAVFAEDESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQPFGG 111
P L VF +D K ++ + +G+ +N + PFGG
Sbjct: 382 HHPKPLAVYVFGKDMDVAKGIIN--QIQSGDAQVNGVMLHAFSPYLPFGG 429
>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC;
HET: NAD; 2.10A {Thermus thermophilus}
Length = 515
Score = 64.1 bits (157), Expect = 4e-13
Identities = 37/115 (32%), Positives = 53/115 (46%), Gaps = 15/115 (13%)
Query: 4 IIGGGQYDESC-------GYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTL 56
++GG + S G ++ PT+ ++ + KI EEIFGPVL + KD ++ L
Sbjct: 371 LVGGERAKTSFRGEDLSRGNYLLPTVFVGENHM-KIAQEEIFGPVLVAIPF--KDEEEAL 427
Query: 57 KIVTDSTPYALTGAVFAEDESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQPFGG 111
+ D T Y L VF D R +L+ AG Y+N S PFGG
Sbjct: 428 RKAND-TKYGLAAYVFTRDLERAHRLALELE--AGMVYLN--SHNVRHLPTPFGG 477
>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure
initiative, nysgrc, P biology, oxidoreductase; 1.50A
{Methanocaldococcus jannaschii} PDB: 3rhd_A*
Length = 486
Score = 63.0 bits (154), Expect = 1e-12
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 11/109 (10%)
Query: 3 EIIGGGQYDESCGYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTDS 62
+++ GG+ D PTI++ + E F PV+ I + ++ + I
Sbjct: 339 KLLLGGKRD---KALFYPTILEVDRDN-ILCKTETFAPVIPIIRTNE---EEMIDIANS- 390
Query: 63 TPYALTGAVFAEDESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQPFGG 111
T Y L A+F D + + ++L++ G IND S PFGG
Sbjct: 391 TEYGLHSAIFTNDINKSLKFAENLEF--GGVVINDSSLFRQD-NMPFGG 436
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST
genomics of infectious diseases, oxidoreductase, csgid;
1.85A {Salmonella typhimurium} PDB: 3efv_A
Length = 462
Score = 62.2 bits (152), Expect = 2e-12
Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 11/112 (9%)
Query: 3 EIIGGGQYDESCGYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTDS 62
++ GG+ G + T++ P +E+FGPV I V KD L + D
Sbjct: 332 RLLLGGEKIAGEGNYYAATVLADVTPDMTAFRQELFGPVAAITVA--KDAAHALALAND- 388
Query: 63 TPYALTGAVFAEDESFQKRCLDDLKYAAGNYYIND--KSTGSVVGQQPFGGT 112
+ + L+ +F D++ L+ G +IN S V FGG
Sbjct: 389 SEFGLSATIFTADDTLAAEMAARLEC--GGVFINGYSASDARV----AFGGV 434
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology,
structural genomics, NEW YORK structura genomics
research consortium; 1.88A {Lactobacillus acidophilus}
Length = 484
Score = 61.8 bits (151), Expect = 3e-12
Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 11/112 (9%)
Query: 3 EIIGGGQYDESCGYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTDS 62
++ +S G F +PTI+ + +E+FGP+ +FV +D + +++ D
Sbjct: 329 KVFYQYPEIDSKGAFFRPTILTDIAKDNPVFDKEVFGPIAEVFVV--EDDNAAIQLAND- 385
Query: 63 TPYALTGAVFAEDESFQKRCLDDLKYAAGNYYIND--KSTGSVVGQQPFGGT 112
+ Y L +V D K+ ++ G IN ++G + PFGG
Sbjct: 386 SSYGLGSSVIGSDIDRAKKVSAQIET--GMTVINGRWITSGEL----PFGGI 431
>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics,
protein structure initiative, nysgrc, P biology; 2.50A
{Bacillus subtilis}
Length = 485
Score = 58.0 bits (141), Expect = 6e-11
Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 9/109 (8%)
Query: 3 EIIGGGQYDESCGYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTDS 62
E+ G+ G + P + D KI E+F P+ TI + + + D
Sbjct: 351 ELAVEGKRV---GNVLTPYVFVGADNNSKIAQTELFAPIATIIKA--GSDQEAIDMAND- 404
Query: 63 TPYALTGAVFAEDESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQPFGG 111
T Y L+ AVF D ++ + G ++ND+S FGG
Sbjct: 405 TEYGLSSAVFTSDLEKGEKFALQIDS--GMTHVNDQSVNDSP-NIAFGG 450
>3v4c_A Aldehyde dehydrogenase (NADP+); structural genomics, PSI-biology,
nysgrc, NEW YORK structura genomics research consortium;
HET: PE4; 1.91A {Sinorhizobium meliloti}
Length = 528
Score = 57.0 bits (138), Expect = 1e-10
Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 9/103 (8%)
Query: 15 GYFIQPTIVQTKDPL---EKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTDSTPYALTGAV 71
G P + +T + + EE+FGP+ + + ++ LT +
Sbjct: 388 GRDASPNLFETTGAQFLADHALGEEVFGPLGLVVRV--GSPAEMEELARG-FQGQLTATI 444
Query: 72 FAE--DESFQKRCLDDLKYAAGNYYINDKSTGSVVGQ-QPFGG 111
+ D +R L+ AG +N TG V GG
Sbjct: 445 HMDAGDLETARRLRPVLERKAGRVLVNGFPTGVEVVDSMVHGG 487
>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein
initiative; 1.90A {Pseudoalteromonas atlantica T6C}
Length = 497
Score = 52.6 bits (127), Expect = 4e-09
Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 10/111 (9%)
Query: 4 IIGGGQYDESC---GYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVT 60
GG G + +PT++ ++ EE FGP+L I +++ ++
Sbjct: 357 ATGGKTATVEGFEGGCWYEPTVLVDVKQDNIVVHEETFGPILPIVKV--SSMEQAIEFCN 414
Query: 61 DSTPYALTGAVFAEDESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQPFGG 111
D + Y L+ V + + + + DL+ G YIN G G
Sbjct: 415 D-SIYGLSAYVHTQSFANINQAISDLEV--GEVYINRGMGEQHQG--FHNG 460
>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.63A {Marinobacter aquaeolei}
Length = 506
Score = 52.2 bits (126), Expect = 7e-09
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 9/109 (8%)
Query: 4 IIGGGQYDESCGYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTDST 63
+ G + G F PT+VQ D EE FGP++ + ++ + ++ + D T
Sbjct: 356 VAGKQPAELGDGLFFPPTVVQGVDREMCCYQEETFGPLVPMALF--RTEEEVIDAGND-T 412
Query: 64 PYALTGAVFAEDESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQ-PFGG 111
+ L VF D +R L++ G+ N TG+ + PFGG
Sbjct: 413 EFGLASYVFTADAERAQRVAAGLRF--GHVGWN---TGTGPTPEAPFGG 456
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion,
oxidoreductase, transit peptide, disease mutation, SSA,
NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A
2w8q_A 2w8r_A*
Length = 487
Score = 51.8 bits (125), Expect = 9e-09
Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 9/110 (8%)
Query: 3 EIIGGGQYDESCGYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTDS 62
++ GG+ + F +PT++ EE FGP+ + + ++ + I
Sbjct: 357 TVVTGGKRHQLGKNFFEPTLLCNVTQDMLCTHEETFGPLAPVIKF--DTEEEAIAIANA- 413
Query: 63 TPYALTGAVFAEDESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQ-PFGG 111
L G +++D + R + L+ G +N G + + PFGG
Sbjct: 414 ADVGLAGYFYSQDPAQIWRVAEQLEV--GMVGVN---EGLISSVECPFGG 458
>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP
binding, oxidoreductase; HET: NAP; 2.30A {Escherichia
coli}
Length = 481
Score = 51.8 bits (125), Expect = 9e-09
Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 3 EIIGGGQYDESCGYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTDS 62
++ GG+ E G F QPTI+ K+ EE FGP+ +F + KD + D
Sbjct: 352 RVVCGGKAHERGGNFFQPTILVDVPANAKVSKEETFGPLAPLFRF--KDEADVIAQAND- 408
Query: 63 TPYALTGAVFAEDESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQ-PFGG 111
T + L +A D S R + L+Y G IN TG + + PFGG
Sbjct: 409 TEFGLAAYFYARDLSRVFRVGEALEY--GIVGIN---TGIISNEVAPFGG 453
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious
disease, ssgcid, seattle structural genomi for
infectious disease; 2.70A {Burkholderia pseudomallei}
PDB: 3ifh_Q
Length = 484
Score = 51.4 bits (124), Expect = 1e-08
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 3 EIIGGGQYDESCGYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTDS 62
++ GG+ F +PT++ P + EE FGP+ +F + ++ +++ D
Sbjct: 355 SLMTGGKRHALGHGFFEPTVLTGVKPDMDVAKEETFGPLAPLFRF--ASEEELVRLAND- 411
Query: 63 TPYALTGAVFAEDESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQ-PFGG 111
T + L +++ D R + L+Y G IN TG + + PFGG
Sbjct: 412 TEFGLAAYLYSRDIGRVWRVAEALEY--GMVGIN---TGLISNEVAPFGG 456
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural
genomics; HET: MES; 2.10A {Brucella melitensis biovar
ABORTUS2308}
Length = 504
Score = 46.8 bits (112), Expect = 5e-07
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 11/110 (10%)
Query: 3 EIIGGGQYDESCGYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTDS 62
++I GG+ E G F +P I+ + EE FGP+ +F + ++ + D
Sbjct: 375 KLITGGK--ELGGLFFEPGILTGVTSDMLVAKEETFGPLAPLFAF--DTEEEVIAQAND- 429
Query: 63 TPYALTGAVFAEDESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQ-PFGG 111
T + L + E+ S R + L+Y G N TG + + PFGG
Sbjct: 430 TIFGLAAYFYTENFSRAIRVSEALEY--GMVGHN---TGLISNEVAPFGG 474
>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG,
structural genomics, midwest center for STR genomics;
2.30A {Vibrio parahaemolyticus}
Length = 452
Score = 45.7 bits (109), Expect = 1e-06
Identities = 12/104 (11%), Positives = 29/104 (27%), Gaps = 15/104 (14%)
Query: 15 GYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKD--LDKTLKIVTDSTPYALTGAVF 72
+ + + E P L +F + + + + + +V T ++
Sbjct: 316 TKVLIGEGLGKVSYDDAF-AHEKLSPTLGMFRADNFEDAVAQAVTMVEI-GGIGHTSGLY 373
Query: 73 AEDESFQKRCLDDLKYAAGNYYINDKSTGSVV--GQQPFGGTND 114
+ R Y+ + T ++ GG D
Sbjct: 374 TNQDVNADRI---------RYFGDKMKTARILINIPTTHGGIGD 408
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase;
oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Length = 486
Score = 45.3 bits (108), Expect = 1e-06
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 15 GYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTDSTPYALTGAVFAE 74
GYF+ PTI I +EIF PVL++ + +L + ++I S +A +F
Sbjct: 360 GYFVGPTIFDNVTTEMTIWKDEIFAPVLSV-IRVK-NLKEAIEIANKS-EFANGACLFTS 416
Query: 75 D----ESFQKR 81
+ F++
Sbjct: 417 NSNAIRYFREN 427
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics,
protein structure INI nysgrc, PSI-biology; 2.90A
{Sinorhizobium meliloti}
Length = 521
Score = 44.2 bits (105), Expect = 3e-06
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 15 GYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTDSTPYALTGAVFAE 74
G+FI + P I EIFGPVL++ V + ++ L + Y A++
Sbjct: 385 GHFIGGCLFDDVTPDMDIYKTEIFGPVLSV-VRAR-NYEEALSLPMKH-EYGNGVAIYTR 441
Query: 75 D 75
D
Sbjct: 442 D 442
>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics,
PSI-2, protein initiative; 2.00A {Listeria
monocytogenes}
Length = 464
Score = 38.1 bits (89), Expect = 5e-04
Identities = 14/116 (12%), Positives = 28/116 (24%), Gaps = 18/116 (15%)
Query: 7 GGQYDESCGYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTDSTPYA 66
G I TK + + E P+L + + + ++ D +
Sbjct: 315 GLTVPADARVLIAEE---TKVGAKIPYSREKLAPILAFYTA--ETWQEACELSMDILYHE 369
Query: 67 ---LTGAVFAEDESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQPFGGTNDKAGGP 119
T + +ED+ + +N GG
Sbjct: 370 GAGHTLIIHSEDKEIIREFALKKP--VSRLLVN--------TPGALGGIGATTNLV 415
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.007
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 50 KDLDKTLKI-VTDSTPYALTGAVFAEDE 76
K L +LK+ DS P AL A+ A E
Sbjct: 23 KKLQASLKLYADDSAP-AL--AIKATME 47
>2kel_A SVTR protein, uncharacterized protein 56B; homodimer,
ribbon-helix-helix, transcription repres; NMR
{Sulfolobus islandicus rod-shaped virus}
Length = 56
Score = 26.7 bits (58), Expect = 0.85
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 23 VQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTDSTPYALTGAV-FAEDESFQKR 81
+QT++ +K + +FG +Y DKDL LK+ LT A+ A E QKR
Sbjct: 1 MQTQEQSQKKKQKAVFG------IYMDKDLKTRLKVYCAKNNLQLTQAIEEAIKEYLQKR 54
>3jyw_B 60S ribosomal protein L2; eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
3izc_B 3izs_B 3o58_B 3o5h_B 3u5e_A 3u5i_A 1s1i_B
Length = 243
Score = 27.9 bits (63), Expect = 1.2
Identities = 7/22 (31%), Positives = 9/22 (40%), Gaps = 1/22 (4%)
Query: 108 PFGGTNDKA-GGPHYVLRWATP 128
P GG N + G + R A
Sbjct: 209 PHGGGNHQHIGKASTISRGAVS 230
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 1.5
Identities = 9/60 (15%), Positives = 15/60 (25%), Gaps = 11/60 (18%)
Query: 42 LTIFVYPDKDLD---KTLKIV-TDSTPYALTGAVFAEDESFQKRCLDDLKYAAGNYYIND 97
L++F P L ++ D V K L + + I
Sbjct: 378 LSVF--PP-SAHIPTILLSLIWFDVIKSD----VMVVVNKLHKYSLVEKQPKESTISIPS 430
Score = 26.0 bits (56), Expect = 5.7
Identities = 9/87 (10%), Positives = 21/87 (24%), Gaps = 25/87 (28%)
Query: 19 QPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDL-DKTLKIVTDSTPYALT--GAVFAED 75
++ L + + L +DL + L P L+ +
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDC---RPQDLPREVLTT----NPRRLSIIAESIRDG 340
Query: 76 ---------------ESFQKRCLDDLK 87
+ + L+ L+
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLE 367
>2zih_A Vacuolar protein sorting-associated protein 74; beta hairpin, VPS,
golgi localization, VPS74, tetramer, golgi apparatus,
phosphoprotein; 2.80A {Saccharomyces cerevisiae} PDB:
2zii_A
Length = 347
Score = 27.6 bits (60), Expect = 1.9
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 27 DPLEKIMTEEIFGPVLTI----FVYPDKDLDKTLKIVTDSTPYALTGAVFAE 74
DP E + + I P LT+ + +D + L DS YAL G + E
Sbjct: 54 DPEESKLRDNINIPTLTLMEEVLLMGLRDREGYLSFWNDSISYALRGCIIIE 105
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.9 bits (59), Expect = 2.8
Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 17/70 (24%)
Query: 31 KIMTEEIFGPV---LT--IFVYPDKDLDKTLKIVTDST-PYALTG---AVFAEDESFQKR 81
K+ TE+IF + T F L T T P ALT A F + +S K
Sbjct: 1700 KLKTEKIFKEINEHSTSYTFRSEKGLLSA-----TQFTQP-ALTLMEKAAFEDLKS--KG 1751
Query: 82 CLDDLKYAAG 91
+ AG
Sbjct: 1752 LIPADATFAG 1761
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide
3-kinase gamma, secondary messenger generation, PI3K, PI
3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP:
a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A*
1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A*
3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A*
3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Length = 961
Score = 27.1 bits (59), Expect = 2.8
Identities = 11/69 (15%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 25 TKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTDSTPYALTGAVFAEDESFQKRCLD 84
T PL + + ++I + I ++ +T+K+ D TP + + F + +
Sbjct: 62 TSKPLPEYLLKKITNNCVFIVIHRSTT-SQTIKVSADDTPGTILQSFFTKMAKKKSLMDI 120
Query: 85 DLKYAAGNY 93
++
Sbjct: 121 PESQNERDF 129
>4a17_A RPL8; eukaryotic ribosome, ribosome, eukaryotic initiation factor
60S, translation, large ribosomal subunit; 3.52A
{Tetrahymena thermophila} PDB: 4a1a_A 4a1c_A 4a1e_A
Length = 264
Score = 26.4 bits (59), Expect = 3.1
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 108 PFGGTNDKA-GGPHYVLRWATP 128
P GG N + G P V +WA+
Sbjct: 211 PHGGGNHQHIGHPATVSKWASA 232
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase;
HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A*
3rp6_A*
Length = 407
Score = 26.1 bits (58), Expect = 4.6
Identities = 6/35 (17%), Positives = 11/35 (31%)
Query: 97 DKSTGSVVGQQPFGGTNDKAGGPHYVLRWATPQSI 131
D +G + Q ++ G + A Q
Sbjct: 98 DFRSGENMTQFSLAPLIERTGSRPCPVSRAELQRE 132
>1vq8_A 50S ribosomal protein L2P; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: b.34.5.3 b.40.4.5 PDB:
1vq4_A* 1vq5_A* 1vq6_A* 1vq7_A* 1s72_A* 1vq9_A* 1vqk_A*
1vql_A* 1vqm_A* 1vqn_A* 1vqo_A* 1vqp_A* 1yhq_A* 1yi2_A*
1yij_A* 1yit_A* 1yj9_A* 1yjn_A* 1yjw_A* 2otj_A* ...
Length = 240
Score = 26.0 bits (58), Expect = 5.6
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 108 PFGGTNDKA-GGPHYVLRWATP 128
PFGG + G P + R A P
Sbjct: 201 PFGGGGRQHPGKPKSISRNAPP 222
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.138 0.422
Gapped
Lambda K H
0.267 0.0717 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,327,091
Number of extensions: 128783
Number of successful extensions: 373
Number of sequences better than 10.0: 1
Number of HSP's gapped: 314
Number of HSP's successfully gapped: 60
Length of query: 147
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 62
Effective length of database: 4,328,508
Effective search space: 268367496
Effective search space used: 268367496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.2 bits)