RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1961
(147 letters)
>d1uzba_ c.82.1.1 (A:) 1-pyrroline-5-carboxylate dehydrogenase
{Thermus thermophilus [TaxId: 274]}
Length = 516
Score = 128 bits (321), Expect = 3e-36
Identities = 51/138 (36%), Positives = 73/138 (52%), Gaps = 10/138 (7%)
Query: 3 EIIGGGQYDESCGYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTDS 62
+++ GG+ E GYFI PT+ P +I EEIFGPVL++ KD + L++ D
Sbjct: 384 QLVLGGKRLEGEGYFIAPTVFTEVPPKARIAQEEIFGPVLSVIRV--KDFAEALEVAND- 440
Query: 63 TPYALTGAVFAEDESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQPFGG-----TNDKAG 117
TPY LTG V++ + + GN Y N K TG++VG QPFGG TN K G
Sbjct: 441 TPYGLTGGVYSRKREHLEWARREFH--VGNLYFNRKITGALVGVQPFGGFKLSGTNAKTG 498
Query: 118 GPHYVLRWATPQSIKETF 135
Y+ + +++ E F
Sbjct: 499 ALDYLRLFLEMKAVAERF 516
>d1o04a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Human (Homo sapiens), mitochondrial [TaxId: 9606]}
Length = 494
Score = 105 bits (263), Expect = 4e-28
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 11/133 (8%)
Query: 3 EIIGGGQYDESCGYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTDS 62
+++ GG GYFIQPT+ I EEIFGPV+ I + K +++ + +
Sbjct: 360 KLLCGGGIAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKF--KTIEEVVGRANN- 416
Query: 63 TPYALTGAVFAEDESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQPFGGTND----KAGG 118
+ Y L AVF +D L+ AG ++N Q PFGG + G
Sbjct: 417 STYGLAAAVFTKDLDKANYLSQALQ--AGTVWVNC--YDVFGAQSPFGGYKMSGSGRELG 472
Query: 119 PHYVLRWATPQSI 131
+ + + +++
Sbjct: 473 EYGLQAYTEVKTV 485
>d1bxsa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Sheep (Ovis aries) [TaxId: 9940]}
Length = 494
Score = 102 bits (255), Expect = 5e-27
Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 11/133 (8%)
Query: 3 EIIGGGQYDESCGYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTDS 62
++ GG + GYFIQPT+ +I EEIFGPV I + K LD +K +
Sbjct: 360 KLECGGGPWGNKGYFIQPTVFSDVTDDMRIAKEEIFGPVQQIMKF--KSLDDVIKRANN- 416
Query: 63 TPYALTGAVFAEDESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQPFGGTND----KAGG 118
T Y L+ +F D L+ +G ++N V Q PFGG + G
Sbjct: 417 TFYGLSAGIFTNDIDKAITVSSALQ--SGTVWVNC--YSVVSAQCPFGGFKMSGNGRELG 472
Query: 119 PHYVLRWATPQSI 131
+ + +++
Sbjct: 473 EYGFHEYTEVKTV 485
>d1a4sa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Baltic cod (Gadus callarias) [TaxId: 8053]}
Length = 503
Score = 97.5 bits (242), Expect = 4e-25
Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 11/133 (8%)
Query: 3 EIIGGGQYDESCGYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTDS 62
E + GYF+ P ++ + EEIFGPV+++ + ++ L+ +
Sbjct: 367 EPLTPSDPKLKNGYFMSPCVLDNCRDDMTCVKEEIFGPVMSVLPF--DTEEEVLQRANN- 423
Query: 63 TPYALTGAVFAEDESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQPFGGTND----KAGG 118
T + L VF D S R +L+ AG YIN S V + PFGG + G
Sbjct: 424 TTFGLASGVFTRDISRAHRVAANLE--AGTCYINTYSISPV--EVPFGGYKMSGFGRENG 479
Query: 119 PHYVLRWATPQSI 131
V ++ +++
Sbjct: 480 QATVDYYSQLKTV 492
>d1wnda_ c.82.1.1 (A:) Putative betaine aldehyde dehydrogenase YdcW
{Escherichia coli [TaxId: 562]}
Length = 474
Score = 92.6 bits (229), Expect = 2e-23
Identities = 27/133 (20%), Positives = 60/133 (45%), Gaps = 11/133 (8%)
Query: 3 EIIGGGQYDESCGYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTDS 62
++I GG+ + GY+ PT++ + I+ +E+FGPV+++ + + ++ + D
Sbjct: 345 KVITGGEKRKGNGYYYAPTLLAGALQDDAIVQKEVFGPVVSVTPF--DNEEQVVNWAND- 401
Query: 63 TPYALTGAVFAEDESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQPFGGTND----KAGG 118
+ Y L +V+ +D R L+ G ++N +V + P GG K
Sbjct: 402 SQYGLASSVWTKDVGRAHRVSARLQ--YGCTWVNTHFM--LVSEMPHGGQKLSGYGKDMS 457
Query: 119 PHYVLRWATPQSI 131
+ + + + +
Sbjct: 458 LYGLEDYTVVRHV 470
>d1ez0a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Vibrio harveyi [TaxId: 669]}
Length = 504
Score = 90.9 bits (224), Expect = 8e-23
Identities = 29/142 (20%), Positives = 51/142 (35%), Gaps = 17/142 (11%)
Query: 9 QYDESCGYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTDSTPYALT 68
+ T + EEIFGP I +++ L + +LT
Sbjct: 347 AESPCVASALFVTSSEN-WRKHPAWEEEIFGPQSLI--VVCENVADMLSLSEM-LAGSLT 402
Query: 69 GAVFAEDESFQK--RCLDDLKYAAGNYYINDKSTGSVVGQQ-----PFGGTND---KAGG 118
+ A +E + + + + L+ AG N TG VG P+ + + G
Sbjct: 403 ATIHATEEDYPQVSQLIPRLEEIAGRLVFNGWPTGVEVGYAMVHGGPYPASTHSASTSVG 462
Query: 119 PHYVLRWATP---QSIKETFVP 137
+ RW P Q++ E+ +P
Sbjct: 463 AEAIHRWLRPVAYQALPESLLP 484
>d1ad3a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 446
Score = 89.6 bits (221), Expect = 2e-22
Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 12/151 (7%)
Query: 1 MSEIIGGGQYDESCGYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVT 60
++ + G + +I PTI+ DP +M EEIFGPV+ I L++ ++ +
Sbjct: 297 DNQKVAHGGTWDQSSRYIAPTILVDVDPQSPVMQEEIFGPVMPIVCVR--SLEEAIQFIN 354
Query: 61 DSTPYALTGAVFAEDESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQPFGGTND----KA 116
L VF+ +E K+ + + +G ND V PFGG +
Sbjct: 355 Q-REKPLALYVFSNNEKVIKKMIAETS--SGGVTANDVIVHITVPTLPFGGVGNSGMGAY 411
Query: 117 GGPHYVLRWATPQS--IKETFV-PLTEWKYP 144
G ++ +S +K + +YP
Sbjct: 412 HGKKSFETFSHRRSCLVKSLLNEEAHKARYP 442
>d1ky8a_ c.82.1.1 (A:) Non-phosphorylating
glyceraldehyde-3-phosphate dehydrogenase GapN {Archaeon
Thermoproteus tenax [TaxId: 2271]}
Length = 499
Score = 85.4 bits (210), Expect = 6e-21
Identities = 33/134 (24%), Positives = 50/134 (37%), Gaps = 10/134 (7%)
Query: 14 CGYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTDSTPYALTGAVFA 73
+ + E+F PV + KDLD+ +++ PY L AVF
Sbjct: 371 YVQPTLVEAPADRVKDMVLYKREVFAPVASAVEV--KDLDQAIELANG-RPYGLDAAVFG 427
Query: 74 EDESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQPFGGTND----KAGGPHYVLRWATPQ 129
D +R + L+ G YIND +G PFGG + G + V +
Sbjct: 428 RDVVKIRRAVRLLE--VGAIYINDMPRHG-IGYYPFGGRKKSGVFREGIGYAVEAVTAYK 484
Query: 130 SIKETFVPLTEWKY 143
+I + WKY
Sbjct: 485 TIVFNYKGKGVWKY 498
>d1euha_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Streptococcus mutans [TaxId: 1309]}
Length = 474
Score = 83.0 bits (204), Expect = 4e-20
Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 10/127 (7%)
Query: 9 QYDESCGYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTDSTPYALT 68
+ G I P + ++ EE FGPVL I +++ ++I + Y L
Sbjct: 349 TEIKREGNLICPILFDKVTTDMRLAWEEPFGPVLPIIRV--TSVEEAIEISNK-SEYGLQ 405
Query: 69 GAVFAEDESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQPFGGTND----KAGGPHYVLR 124
++F D + L+ G +IN+K T PF G G + +
Sbjct: 406 ASIFTNDFPRAFGIAEQLE--VGTVHINNK-TQRGTDNFPFLGAKKSGAGIQGVKYSIEA 462
Query: 125 WATPQSI 131
T +S+
Sbjct: 463 MTTVKSV 469
>d1o20a_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase
{Thermotoga maritima [TaxId: 2336]}
Length = 414
Score = 55.8 bits (133), Expect = 1e-10
Identities = 23/135 (17%), Positives = 49/135 (36%), Gaps = 14/135 (10%)
Query: 14 CGYFIQPTIVQTKDPLEKIMTEEIFGPVLTIFVYPDKDLDKTLKIVTDSTPYALTGAVFA 73
+ + E E ++ I V K++D+ ++ + + ++
Sbjct: 287 GCEKTREIVPDVVPATEDDWPTEYLDLIIAIKVV--KNVDEAIEHIKK-YSTGHSESILT 343
Query: 74 EDESFQKRCLDDLKYAAGNYYINDKSTGSVVGQQPFGGTND-KAGGPHYVLRWATPQSIK 132
E+ S K+ + ++ A Y+N + + GQ FG H P ++
Sbjct: 344 ENYSNAKKFVSEID--AAAVYVNASTRFTDGGQFGFGAEIGISTQRFHA----RGPVGLR 397
Query: 133 ETFVPLTEWKYPYMG 147
E LT +K+ +G
Sbjct: 398 E----LTTYKFVVLG 408
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.138 0.422
Gapped
Lambda K H
0.267 0.0488 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 578,812
Number of extensions: 24938
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 10
Length of query: 147
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 70
Effective length of database: 1,350,386
Effective search space: 94527020
Effective search space used: 94527020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.2 bits)