RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1962
(79 letters)
>gnl|CDD|143441 cd07123, ALDH_F4-17_P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, ALDH families 4 and 17.
Delta(1)-pyrroline-5-carboxylate dehydrogenase
(EC=1.5.1.12 ), families 4 and 17: a proline catabolic
enzyme of the aldehyde dehydrogenase (ALDH) protein
superfamily. Delta(1)-pyrroline-5-carboxylate
dehydrogenase (P5CDH), also known as ALDH4A1 in humans,
is a mitochondrial homodimer involved in proline
degradation and catalyzes the NAD + -dependent
conversion of P5C to glutamate. This is a necessary step
in the pathway interconnecting the urea and
tricarboxylic acid cycles. The preferred substrate is
glutamic gamma-semialdehyde, other substrates include
succinic, glutaric and adipic semialdehydes. Also
included in this CD is the Aldh17 Drosophila
melanogaster (Q9VUC0) P5CDH and similar sequences.
Length = 522
Score = 81.9 bits (203), Expect = 4e-20
Identities = 30/51 (58%), Positives = 37/51 (72%)
Query: 1 MLDKLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYD 51
L ++K+GD + +F GAVID+KAFDRI GYI HAKS P EII GG+ D
Sbjct: 341 ELKEIKMGDPDDFSNFMGAVIDEKAFDRIKGYIDHAKSDPEAEIIAGGKCD 391
>gnl|CDD|233324 TIGR01236, D1pyr5carbox1, delta-1-pyrroline-5-carboxylate
dehydrogenase, group 1. This model represents one of
two related branches of delta-1-pyrroline-5-carboxylate
dehydrogenase. The two branches are not as closely
related to each other as some aldehyde dehydrogenases
are to this branch, and separate models are built for
this reason. The enzyme is the second of two in the
degradation of proline to glutamate [Energy metabolism,
Amino acids and amines].
Length = 532
Score = 62.1 bits (151), Expect = 4e-13
Identities = 26/52 (50%), Positives = 38/52 (73%), Gaps = 1/52 (1%)
Query: 2 LDKLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSP-NLEIIGGGQYDE 52
L ++K+GD + +F GAVID+K+F +I YI+HAKS P L I+ GG+YD+
Sbjct: 341 LSRVKVGDPDDFGTFMGAVIDEKSFAKIVKYIEHAKSDPSALTILAGGKYDD 392
>gnl|CDD|143410 cd07091, ALDH_F1-2_Ald2-like, ALDH subfamily: ALDH families 1and 2,
including 10-formyltetrahydrofolate dehydrogenase,
NAD+-dependent retinal dehydrogenase 1 and related
proteins. ALDH subfamily which includes the
NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1,
EC=1.2.1.36), also known as aldehyde dehydrogenase
family 1 member A1 (ALDH1A1), in humans, a
homotetrameric, cytosolic enzyme that catalyzes the
oxidation of retinaldehyde to retinoic acid. Human
ALDH1B1 and ALDH2 are also in this cluster; both are
mitochrondrial homotetramers which play important roles
in acetaldehyde oxidation; ALDH1B1 in response to UV
light exposure and ALDH2 during ethanol metabolism.
10-formyltetrahydrofolate dehydrogenase (FTHFDH,
EC=1.5.1.6), also known as aldehyde dehydrogenase family
1 member L1 (ALDH1L1), in humans, a multi-domain
homotetramer with an N-terminal formyl transferase
domain and a C-terminal ALDH domain. FTHFDH catalyzes an
NADP+-dependent dehydrogenase reaction resulting in the
conversion of 10-formyltetrahydrofolate to
tetrahydrofolate and CO2. Also included in this
subfamily is the Arabidosis aldehyde dehydrogenase
family 2 members B4 and B7 (EC=1.2.1.3), which are
mitochondrial, homotetramers that oxidize acetaldehyde
and glycolaldehyde, as well as, the Arabidosis
cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme
involved in the oxidation of sinapalehyde and
coniferaldehyde. Also included is the AldA aldehyde
dehydrogenase of Aspergillus nidulans (locus AN0554),
the aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5)
of Saccharomyces cerevisiae, and other similar
sequences.
Length = 476
Score = 44.1 bits (105), Expect = 8e-07
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 4 KLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDERGERVKES--S 61
K +GD D+F G + K FD+I YI+ K + GG ++ +G ++ + +
Sbjct: 311 KRVVGDPFDPDTFQGPQVSKAQFDKILSYIESGKKEGATLLTGGERHGSKGYFIQPTVFT 370
Query: 62 DLEDLAFIAR 71
D++D IA+
Sbjct: 371 DVKDDMKIAK 380
>gnl|CDD|143402 cd07083, ALDH_P5CDH, ALDH subfamily NAD+-dependent
delta(1)-pyrroline-5-carboxylate dehydrogenase-like.
ALDH subfamily of the NAD+-dependent,
delta(1)-pyrroline-5-carboxylate dehydrogenases (P5CDH,
EC=1.5.1.12). The proline catabolic enzymes, proline
dehydrogenase and P5CDH catalyze the two-step oxidation
of proline to glutamate. P5CDH catalyzes the oxidation
of glutamate semialdehyde, utilizing NAD+ as the
electron acceptor. In some bacteria, the two enzymes are
fused into the bifunctional flavoenzyme, proline
utilization A (PutA). These enzymes play important roles
in cellular redox control, superoxide generation, and
apoptosis. In certain prokaryotes such as Escherichia
coli, PutA is also a transcriptional repressor of the
proline utilization genes. Monofunctional enzyme
sequences such as those seen in the Bacillus RocA P5CDH
are also present in this subfamily as well as the human
ALDH4A1 P5CDH and the Drosophila Aldh17 P5CDH.
Length = 500
Score = 44.1 bits (104), Expect = 1e-06
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 3 DKLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDE 52
++L +G E + G VID + ++ YI+H K+ +++ GG+ E
Sbjct: 328 ERLSVGPPEENGTDLGPVIDAEQEAKVLSYIEHGKNE--GQLVLGGKRLE 375
>gnl|CDD|143442 cd07124, ALDH_PutA-P5CDH-RocA, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, RocA. Delta(1)-pyrroline-5-carboxylate
dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic
enzyme of the aldehyde dehydrogenase (ALDH) protein
superfamily. The proline catabolic enzymes, proline
dehydrogenase and Delta(1)-pyrroline-5-carboxylate
dehydrogenase (P5CDH), catalyze the two-step oxidation
of proline to glutamate; P5CDH catalyzes the oxidation
of glutamate semialdehyde, utilizing NAD+ as the
electron acceptor. In some bacteria, the two enzymes are
fused into the bifunctional flavoenzyme, proline
utilization A (PutA). In this CD, monofunctional enzyme
sequences such as seen in the Bacillus subtilis RocA
P5CDH are also present. These enzymes play important
roles in cellular redox control, superoxide generation,
and apoptosis.
Length = 512
Score = 43.4 bits (103), Expect = 1e-06
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 4 KLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKS 38
LK+GD E + + G VIDK A DRI YI+ KS
Sbjct: 341 ALKVGDPEDPEVYMGPVIDKGARDRIRRYIEIGKS 375
>gnl|CDD|143426 cd07108, ALDH_MGR_2402, Magnetospirillum NAD(P)+-dependent aldehyde
dehydrogenase MSR-1-like. NAD(P)+-dependent aldehyde
dehydrogenase of Magnetospirillum gryphiswaldense MSR-1
(MGR_2402) , and other similar sequences, are present in
this CD.
Length = 457
Score = 43.1 bits (102), Expect = 2e-06
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 2 LDKLKIGDV--EYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGG 48
L KLKIGD E TD GA+I +K F ++ GYI S+ ++ GG
Sbjct: 284 LSKLKIGDPLDEATD--IGAIISEKQFAKVCGYIDLGLSTSGATVLRGG 330
>gnl|CDD|215767 pfam00171, Aldedh, Aldehyde dehydrogenase family. This family of
dehydrogenases act on aldehyde substrates. Members use
NADP as a cofactor. The family includes the following
members: The prototypical members are the aldehyde
dehydrogenases EC:1.2.1.3. Succinate-semialdehyde
dehydrogenase EC:1.2.1.16. Lactaldehyde dehydrogenase
EC:1.2.1.22. Benzaldehyde dehydrogenase EC:1.2.1.28.
Methylmalonate-semialdehyde dehydrogenase EC:1.2.1.27.
Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9.
Delta-1-pyrroline-5-carboxylate dehydrogenase EC:
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10.
Glutamate-5-semialdehyde dehydrogenase EC:1.2.1.41. This
family also includes omega crystallin, an eye lens
protein from squid and octopus that has little aldehyde
dehydrogenase activity.
Length = 459
Score = 41.4 bits (98), Expect = 7e-06
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 4 KLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDERG 54
LK+GD D+ G +I KK +R+ YI+ AK + GG E+G
Sbjct: 295 SLKVGDPLDPDTDIGPLISKKQRERVLSYIEDAKEEGAKLLCGGEAGLEKG 345
>gnl|CDD|179543 PRK03137, PRK03137, 1-pyrroline-5-carboxylate dehydrogenase;
Provisional.
Length = 514
Score = 40.7 bits (96), Expect = 1e-05
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 4 KLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDERG 54
+L +G+ E +++ G VI++ +FD+I YI+ K L ++GG D +G
Sbjct: 346 ELTVGNPE-DNAYMGPVINQASFDKIMSYIEIGKEEGRL-VLGGEGDDSKG 394
>gnl|CDD|200087 TIGR01237, D1pyr5carbox2, delta-1-pyrroline-5-carboxylate
dehydrogenase, group 2, putative. This enzyme is the
second of two in the degradation of proline to
glutamate. This model represents one of several related
branches of delta-1-pyrroline-5-carboxylate
dehydrogenase. Members of this branch may be associated
with proline dehydrogenase (the other enzyme of the
pathway from proline to glutamate) but have not been
demonstrated experimentally. The branches are not as
closely related to each other as some distinct aldehyde
dehydrogenases are to some; separate models were built
to let each model describe a set of equivalogs [Energy
metabolism, Amino acids and amines].
Length = 511
Score = 39.1 bits (91), Expect = 4e-05
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 5 LKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDERGERVK 58
LK+G + D + G VID+K+F++I YI+ K+ L + GG D +G +
Sbjct: 343 LKVGPPDSADVYVGPVIDQKSFNKIMEYIEIGKAEGRL-VSGGCGDDSKGYFIG 395
>gnl|CDD|143409 cd07090, ALDH_F9_TMBADH, NAD+-dependent
4-trimethylaminobutyraldehyde dehydrogenase, ALDH family
9A1. NAD+-dependent, 4-trimethylaminobutyraldehyde
dehydrogenase (TMABADH, EC=1.2.1.47), also known as
aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in
humans, is a cytosolic tetramer which catalyzes the
oxidation of gamma-aminobutyraldehyde involved in
4-aminobutyric acid (GABA) biosynthesis and also
oxidizes betaine aldehyde
(gamma-trimethylaminobutyraldehyde) which is involved in
carnitine biosynthesis.
Length = 457
Score = 37.3 bits (87), Expect = 2e-04
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 4 KLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDERGERVKESSDL 63
K++IGD D+ GA+I ++ +++ GYI+ AK G + GERV L
Sbjct: 284 KIRIGDPLDEDTQMGALISEEHLEKVLGYIESAKQE-------GAKVLCGGERVVPEDGL 336
Query: 64 EDLAFIA 70
E+ +++
Sbjct: 337 ENGFYVS 343
>gnl|CDD|143461 cd07143, ALDH_AldA_AN0554, Aspergillus nidulans aldehyde
dehydrogenase, AldA (AN0554)-like. NAD(P)+-dependent
aldehyde dehydrogenase (AldA) of Aspergillus nidulans
(locus AN0554), and other similar sequences, are present
in this CD.
Length = 481
Score = 37.1 bits (86), Expect = 3e-04
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 4 KLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDERG 54
KLK+GD D+F G + + ++RI YI+ K+ GG ++ G
Sbjct: 314 KLKVGDPFAEDTFQGPQVSQIQYERIMSYIESGKAEGATVETGGKRHGNEG 364
>gnl|CDD|223944 COG1012, PutA, NAD-dependent aldehyde dehydrogenases [Energy
production and conversion].
Length = 472
Score = 35.7 bits (83), Expect = 7e-04
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 4 KLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGG 48
LK+GD + G +I ++ DR+ GYI+ A + + GG
Sbjct: 302 SLKVGDPLDPSTDLGPLISEEQLDRVEGYIEDAVAEGARLLAGGK 346
>gnl|CDD|143405 cd07086, ALDH_F7_AASADH-like, NAD+-dependent alpha-aminoadipic
semialdehyde dehydrogenase and related proteins. ALDH
subfamily which includes the NAD+-dependent,
alpha-aminoadipic semialdehyde dehydrogenase (AASADH,
EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1,
ALDH7B or delta-1-piperideine-6-carboxylate
dehydrogenase (P6CDH), and other similar sequences, such
as the uncharacterized aldehyde dehydrogenase of
Candidatus kuenenia AldH (locus CAJ73105).
Length = 478
Score = 35.2 bits (82), Expect = 0.001
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 4 KLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDERGE 55
+++IGD + G +I++ A ++ I+ AKS ++ GG+ + GE
Sbjct: 305 QVRIGDPLDEGTLVGPLINQAAVEKYLNAIEIAKSQ-GGTVLTGGKRIDGGE 355
>gnl|CDD|143397 cd07078, ALDH, NAD(P)+ dependent aldehyde dehydrogenase family.
The aldehyde dehydrogenase family (ALDH) of NAD(P)+
dependent enzymes, in general, oxidize a wide range of
endogenous and exogenous aliphatic and aromatic
aldehydes to their corresponding carboxylic acids and
play an important role in detoxification. Besides
aldehyde detoxification, many ALDH isozymes possess
multiple additional catalytic and non-catalytic
functions such as participating in metabolic pathways,
or as binding proteins, or as osmoregulants, to mention
a few. The enzyme has three domains, a NAD(P)+
cofactor-binding domain, a catalytic domain, and a
bridging domain; and the active enzyme is generally
either homodimeric or homotetrameric. The catalytic
mechanism is proposed to involve cofactor binding,
resulting in a conformational change and activation of
an invariant catalytic cysteine nucleophile. The
cysteine and aldehyde substrate form an oxyanion
thiohemiacetal intermediate resulting in hydride
transfer to the cofactor and formation of a
thioacylenzyme intermediate. Hydrolysis of the
thioacylenzyme and release of the carboxylic acid
product occurs, and in most cases, the reduced cofactor
dissociates from the enzyme. The evolutionary
phylogenetic tree of ALDHs appears to have an initial
bifurcation between what has been characterized as the
classical aldehyde dehydrogenases, the ALDH family
(ALDH) and extended family members or aldehyde
dehydrogenase-like (ALDH-like) proteins. The ALDH
proteins are represented by enzymes which share a number
of highly conserved residues necessary for catalysis and
cofactor binding and they include such proteins as
retinal dehydrogenase, 10-formyltetrahydrofolate
dehydrogenase, non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase,
delta(1)-pyrroline-5-carboxylate dehydrogenases,
alpha-ketoglutaric semialdehyde dehydrogenase,
alpha-aminoadipic semialdehyde dehydrogenase, coniferyl
aldehyde dehydrogenase and succinate-semialdehyde
dehydrogenase. Included in this larger group are all
human, Arabidopsis, Tortula, fungal, protozoan, and
Drosophila ALDHs identified in families ALDH1 through
ALDH22 with the exception of families ALDH18, ALDH19,
and ALDH20 which are present in the ALDH-like group.
Length = 432
Score = 34.5 bits (80), Expect = 0.002
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 2 LDKLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDERG 54
+ LK+G+ D+ G +I DR+ YI+ AK+ +++ GG+ E G
Sbjct: 263 VKALKVGNPLDPDTDMGPLISAAQLDRVLAYIEDAKAEG-AKLLCGGKRLEGG 314
>gnl|CDD|143460 cd07142, ALDH_F2BC, Arabidosis aldehyde dehydrogenase family 2 B4,
B7, C4-like. Included in this CD is the Arabidosis
aldehyde dehydrogenase family 2 members B4 and B7
(EC=1.2.1.3), which are mitochondrial homotetramers
that oxidize acetaldehyde and glycolaldehyde, but not
L-lactaldehyde. Also in this group, is the Arabidosis
cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme
involved in the oxidation of sinapalehyde and
coniferaldehyde.
Length = 476
Score = 34.4 bits (79), Expect = 0.003
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 18 GAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDERGERVKES--SDLEDLAFIARN 72
G +DK+ F++I YI+H K I GG + +G ++ + SD++D IAR+
Sbjct: 325 GPQVDKEQFEKILSYIEHGKEEGATLITGGDRIGSKGYYIQPTIFSDVKDDMKIARD 381
>gnl|CDD|143435 cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus
AldA1 (SACOL0154) aldehyde dehydrogenase-like.
Uncharacterized aldehyde dehydrogenase from
Staphylococcus aureus (AldA1, locus SACOL0154) and other
similar sequences are present in this CD.
Length = 475
Score = 33.6 bits (77), Expect = 0.004
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 3 DKLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDERG 54
+ +K+G+ D+ GA ++K D+I Y+ AK + GG + E G
Sbjct: 303 ENVKVGNPLDPDTQMGAQVNKDQLDKILSYVDIAKEEGAKILTGGHRLTENG 354
>gnl|CDD|215259 PLN02466, PLN02466, aldehyde dehydrogenase family 2 member.
Length = 538
Score = 32.5 bits (74), Expect = 0.009
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 18 GAVIDKKAFDRITGYIKHA-KSSPNLEIIGGGQYDERGERVKES--SDLEDLAFIARN 72
G ID + F++I YIK +S LE GG ++ +G ++ + S+++D IA++
Sbjct: 379 GPQIDSEQFEKILRYIKSGVESGATLE-CGGDRFGSKGYYIQPTVFSNVQDDMLIAQD 435
>gnl|CDD|143459 cd07141, ALDH_F1AB_F2_RALDH1, NAD+-dependent retinal dehydrogenase
1, ALDH families 1A, 1B, and 2-like. NAD+-dependent
retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36)
also known as aldehyde dehydrogenase family 1 member A1
(ALDH1A1) in humans, is a homotetrameric, cytosolic
enzyme that catalyzes the oxidation of retinaldehyde to
retinoic acid. Human ALDH1B1 and ALDH2 are also in this
cluster; both are mitochrondrial homotetramers which
play important roles in acetaldehyde oxidation; ALDH1B1
in response to UV light exposure and ALDH2 during
ethanol metabolism.
Length = 481
Score = 32.7 bits (75), Expect = 0.010
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 4 KLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDERGERVKES--S 61
K +G+ + G ID++ F +I I+ K GG ++ ++G ++ + S
Sbjct: 315 KRVVGNPFDPKTEQGPQIDEEQFKKILELIESGKKEGAKLECGGKRHGDKGYFIQPTVFS 374
Query: 62 DLEDLAFIAR 71
D+ D IA+
Sbjct: 375 DVTDDMRIAK 384
>gnl|CDD|132417 TIGR03374, ABALDH, 1-pyrroline dehydrogenase. Members of this
protein family are 1-pyrroline dehydrogenase (1.5.1.35),
also called gamma-aminobutyraldehyde dehydrogenase. This
enzyme can follow putrescine transaminase (EC 2.6.1.82)
for a two-step conversion of putrescine to
gamma-aminobutyric acid (GABA). The member from
Escherichia coli is characterized as a homotetramer that
binds one NADH per momomer. This enzyme belongs to the
medium-chain aldehyde dehydrogenases, and is quite
similar in sequence to the betaine aldehyde
dehydrogenase (EC 1.2.1.8) family.
Length = 472
Score = 31.5 bits (71), Expect = 0.023
Identities = 10/45 (22%), Positives = 23/45 (51%)
Query: 5 LKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQ 49
LK G + + G + +R+ ++ AK+ ++++I GG+
Sbjct: 306 LKSGAPDDESTELGPLSSLAHLERVMKAVEEAKALGHIKVITGGE 350
>gnl|CDD|143412 cd07093, ALDH_F8_HMSADH, Human aldehyde dehydrogenase family 8
member A1-like. In humans, the aldehyde dehydrogenase
family 8 member A1 (ALDH8A1) protein functions to
convert 9-cis-retinal to 9-cis-retinoic acid and has a
preference for NAD+. Also included in this CD is the
2-hydroxymuconic semialdehyde dehydrogenase (HMSADH)
which catalyzes the conversion of 2-hydroxymuconic
semialdehyde to 4-oxalocrotonate, a step in the meta
cleavage pathway of aromatic hydrocarbons in bacteria.
Such HMSADHs seen here are: XylG of the TOL plasmid pWW0
of Pseudomonas putida, TomC of Burkholderia cepacia G4,
and AphC of Comamonas testosterone.
Length = 455
Score = 31.4 bits (72), Expect = 0.024
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Query: 3 DKLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDERGERVKESSD 62
LK+GD D+ G +I K+ +++ GY++ A++ I+ GG E D
Sbjct: 285 KALKVGDPLDPDTEVGPLISKEHLEKVLGYVELARAE-GATILTGG-------GRPELPD 336
Query: 63 LEDLAFIA 70
LE F+
Sbjct: 337 LEGGYFVE 344
>gnl|CDD|143430 cd07112, ALDH_GABALDH-PuuC, Escherichia coli NADP+-dependent
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
PuuC-like. NADP+-dependent,
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
(GABALDH) PuuC of Escherichia coli which catalyzes the
conversion of putrescine to 4-aminobutanoate and other
similar sequences are present in this CD.
Length = 462
Score = 31.4 bits (72), Expect = 0.029
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 4 KLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQ 49
+ K GD + GA++ + FD++ GYI+ K+ + GG +
Sbjct: 295 EWKPGDPLDPATRMGALVSEAHFDKVLGYIESGKAEGARLVAGGKR 340
>gnl|CDD|143443 cd07125, ALDH_PutA-P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, PutA. The proline catabolic enzymes of
the aldehyde dehydrogenase (ALDH) protein superfamily,
proline dehydrogenase and
Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
(EC=1.5.1.12 )), catalyze the two-step oxidation of
proline to glutamate; P5CDH catalyzes the oxidation of
glutamate semialdehyde, utilizing NAD+ as the electron
acceptor. In some bacteria, the two enzymes are fused
into the bifunctional flavoenzyme, proline utilization A
(PutA) These enzymes play important roles in cellular
redox control, superoxide generation, and apoptosis. In
certain prokaryotes such as Escherichia coli, PutA is
also a transcriptional repressor of the proline
utilization genes.
Length = 518
Score = 31.0 bits (71), Expect = 0.035
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 5 LKIGDVEYTDSFAGAVIDKKAFDRITGYIK 34
LK+GD + G +IDK A + + +
Sbjct: 340 LKVGDPWDLSTDVGPLIDKPAGKLLRAHTE 369
>gnl|CDD|143452 cd07134, ALDH_AlkH-like, Pseudomonas putida Aldehyde dehydrogenase
AlkH-like. Aldehyde dehydrogenase AlkH (locus name
P12693, EC=1.2.1.3) of the alkBFGHJKL operon that allows
Pseudomonas putida to metabolize alkanes and the
aldehyde dehydrogenase AldX of Bacillus subtilis (locus
P46329, EC=1.2.1.3), and similar sequences, are present
in this CD.
Length = 433
Score = 30.7 bits (70), Expect = 0.043
Identities = 9/33 (27%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 20 VIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDE 52
+++ + FDR+ G + A + ++ GGQ+D
Sbjct: 283 IVNDRHFDRLKGLLDDAVAK-GAKVEFGGQFDA 314
>gnl|CDD|226737 COG4287, PqaA, PhoPQ-activated pathogenicity-related protein
[General function prediction only].
Length = 507
Score = 30.6 bits (69), Expect = 0.058
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 44 IIGGGQYDERGERVKESSDL--EDLAFIARNT 73
+ G + + GER +S DL E+LA++AR T
Sbjct: 129 VNNGTRRKKEGERYYDSFDLDVEELAWVARET 160
>gnl|CDD|143406 cd07087, ALDH_F3-13-14_CALDH-like, ALDH subfamily: Coniferyl
aldehyde dehydrogenase, ALDH families 3, 13, and 14, and
other related proteins. ALDH subfamily which includes
NAD(P)+-dependent, aldehyde dehydrogenase, family 3
member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and
fatty aldehyde dehydrogenase, family 3 member A2
(ALDH3A2, EC=1.2.1.3), and also plant ALDH family
members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14
(YMR110C) and the protozoan family 13 member (ALDH13),
as well as coniferyl aldehyde dehydrogenases (CALDH,
EC=1.2.1.68), and other similar sequences, such as the
Pseudomonas putida benzaldehyde dehydrogenase I that is
involved in the metabolism of mandelate.
Length = 426
Score = 30.2 bits (69), Expect = 0.073
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
Query: 18 GAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDE 52
G +I+++ FDR+ + K ++ GGQ D+
Sbjct: 279 GRIINERHFDRLASLLDDGK------VVIGGQVDK 307
>gnl|CDD|237018 PRK11905, PRK11905, bifunctional proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1208
Score = 30.2 bits (69), Expect = 0.077
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 2 LDKLKIGDVEY--TDSFAGAVIDKKAFDRITGYIKHAKS 38
+D+L+IGD TD G VID +A I +I+ ++
Sbjct: 846 MDELRIGDPWRLSTDV--GPVIDAEAQANIEAHIEAMRA 882
>gnl|CDD|143436 cd07118, ALDH_SNDH, Gluconobacter oxydans L-sorbosone
dehydrogenase-like. Included in this CD is the
L-sorbosone dehydrogenase (SNDH) from Gluconobacter
oxydans UV10. In G. oxydans, D-sorbitol is converted to
2-keto-L-gulonate (a precursor of L-ascorbic acid) in
sequential oxidation steps catalyzed by a FAD-dependent,
L-sorbose dehydrogenase and an NAD(P)+-dependent,
L-sorbosone dehydrogenase.
Length = 454
Score = 29.6 bits (67), Expect = 0.094
Identities = 11/50 (22%), Positives = 26/50 (52%)
Query: 4 KLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDER 53
K+++GD ++ GA+I++ +IT Y+ ++ ++GG +
Sbjct: 288 KVRVGDPLDPETKVGAIINEAQLAKITDYVDAGRAEGATLLLGGERLASA 337
>gnl|CDD|237391 PRK13473, PRK13473, gamma-aminobutyraldehyde dehydrogenase;
Provisional.
Length = 475
Score = 29.9 bits (68), Expect = 0.10
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 3 DKLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGG 48
LK+GD + D+ G +I DR+ G+++ AK+ ++ ++ GG
Sbjct: 305 ATLKVGDPDDEDTELGPLISAAHRDRVAGFVERAKALGHIRVVTGG 350
>gnl|CDD|215410 PLN02766, PLN02766, coniferyl-aldehyde dehydrogenase.
Length = 501
Score = 29.8 bits (67), Expect = 0.11
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 6 KIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDERG 54
+GD + G +DK+ F++I YI+H K + GG ++G
Sbjct: 330 VVGDPFDPRARQGPQVDKQQFEKILSYIEHGKREGATLLTGGKPCGDKG 378
>gnl|CDD|143449 cd07131, ALDH_AldH-CAJ73105, Uncharacterized Candidatus kuenenia
aldehyde dehydrogenase AldH (CAJ73105)-like.
Uncharacterized aldehyde dehydrogenase of Candidatus
kuenenia AldH (locus CAJ73105) and similar sequences
with similarity to alpha-aminoadipic semialdehyde
dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31),
Arabidopsis ALDH7B4, and Streptomyces clavuligerus
delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH)
are included in this CD.
Length = 478
Score = 29.6 bits (67), Expect = 0.11
Identities = 10/51 (19%), Positives = 25/51 (49%)
Query: 4 KLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDERG 54
+L++GD ++ G +I++ +++ Y + K ++GG + G
Sbjct: 304 RLRVGDGLDEETDMGPLINEAQLEKVLNYNEIGKEEGATLLLGGERLTGGG 354
>gnl|CDD|143462 cd07144, ALDH_ALD2-YMR170C, Saccharomyces cerevisiae aldehyde
dehydrogenase 2 (YMR170c)-like. NAD(P)+-dependent
Saccharomyces cerevisiae aldehyde dehydrogenase 2
(YMR170c, ALD5, EC=1.2.1.5) and other similar sequences,
are present in this CD.
Length = 484
Score = 29.7 bits (67), Expect = 0.11
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 6 KIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSS 39
K+G D+ G + K +DR+ YI+ K
Sbjct: 316 KVGSPFDDDTVVGPQVSKTQYDRVLSYIEKGKKE 349
>gnl|CDD|143469 cd07151, ALDH_HBenzADH, NADP+-dependent p-hydroxybenzaldehyde
dehydrogenase-like. NADP+-dependent,
p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH)
which catalyzes oxidation of p-hydroxybenzaldehyde to
p-hydroxybenzoic acid and other related sequences are
included in this CD.
Length = 465
Score = 29.2 bits (66), Expect = 0.16
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 4 KLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGG 47
L GD D+ G +I++ D + I+ A ++GG
Sbjct: 300 ALPYGDPSDPDTVVGPLINESQVDGLLDKIEQAVEEGATLLVGG 343
>gnl|CDD|143454 cd07136, ALDH_YwdH-P39616, Bacillus subtilis aldehyde dehydrogenase
ywdH-like. Uncharacterized Bacillus subtilis ywdH
aldehyde dehydrogenase (locus P39616) most closely
related to the ALDHs and fatty ALDHs of families 3 and
14, and similar sequences, are included in this CD.
Length = 449
Score = 29.0 bits (66), Expect = 0.17
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
Query: 18 GAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDER 53
G +I++K FDR+ G + + K I+ GG D
Sbjct: 279 GRIINEKHFDRLAGLLDNGK------IVFGGNTDRE 308
>gnl|CDD|143425 cd07107, ALDH_PhdK-like, Nocardioides 2-carboxybenzaldehyde
dehydrogenase, PhdK-like. Nocardioides sp. strain
KP72-carboxybenzaldehyde dehydrogenase (PhdK), an enzyme
involved in phenanthrene degradation, and other similar
sequences, are present in this CD.
Length = 456
Score = 28.9 bits (65), Expect = 0.18
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 2 LDKLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGG 48
+ +K+GD + G ++ ++ +DR+ YI AK + GGG
Sbjct: 283 VAAIKVGDPTDPATTMGPLVSRQQYDRVMHYIDSAKREGARLVTGGG 329
>gnl|CDD|143404 cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase
and ALDH family members 6A1 and 6B2. Methylmalonate
semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27)
[acylating] from Bacillus subtilis is involved in valine
metabolism and catalyses the NAD+- and CoA-dependent
oxidation of methylmalonate semialdehyde into
propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and
Arabidopsis MMSDH ALDH6B2 are also present in this CD.
Length = 478
Score = 28.6 bits (65), Expect = 0.21
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 4 KLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHA 36
KLK+G + + G VI A +RI G I+
Sbjct: 304 KLKVGAGDDPGADMGPVISPAAKERIEGLIESG 336
>gnl|CDD|143427 cd07109, ALDH_AAS00426, Uncharacterized Saccharopolyspora spinosa
aldehyde dehydrogenase (AAS00426)-like. Uncharacterized
aldehyde dehydrogenase of Saccharopolyspora spinosa
(AAS00426) and other similar sequences, are present in
this CD.
Length = 454
Score = 28.7 bits (65), Expect = 0.25
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 18 GAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQ 49
G +I K DR+ G++ A++ I+ GG+
Sbjct: 299 GPLISAKQLDRVEGFVARARAR-GARIVAGGR 329
>gnl|CDD|237017 PRK11904, PRK11904, bifunctional proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1038
Score = 28.6 bits (65), Expect = 0.28
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 2 LDKLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSS 39
+ +LK+GD + G VID +A + +I+ K
Sbjct: 854 MAELKVGDPRLLSTDVGPVIDAEAKANLDAHIERMKRE 891
>gnl|CDD|143471 cd07559, ALDH_ACDHII_AcoD-like, Ralstonia eutrophus NAD+-dependent
acetaldehyde dehydrogenase II and Staphylococcus aureus
AldA1 (SACOL0154)-like. Included in this CD is the
NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII,
AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus
H16 involved in the catabolism of acetoin and ethanol,
and similar proteins, such as, the dimeric
dihydrolipoamide dehydrogenase of the acetoin
dehydrogenase enzyme system of Klebsiella pneumonia.
Also included are sequences similar to the
NAD+-dependent chloroacetaldehyde dehydrogenases (AldA
and AldB) of Xanthobacter autotrophicus GJ10 which are
involved in the degradation of 1,2-dichloroethane, as
well as, the uncharacterized aldehyde dehydrogenase from
Staphylococcus aureus (AldA1, locus SACOL0154) and other
similar sequences.
Length = 480
Score = 28.1 bits (63), Expect = 0.35
Identities = 11/52 (21%), Positives = 22/52 (42%)
Query: 4 KLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDERGE 55
+K+G+ ++ GA + K ++I Y+ K + GG + G
Sbjct: 309 AIKVGNPLDPETMMGAQVSKDQLEKILSYVDIGKEEGAEVLTGGERLTLGGL 360
>gnl|CDD|143424 cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative
aldehyde dehydrogenase AldA (AAD23400)-like. Putative
aldehyde dehydrogenase, AldA, from Streptomyces
aureofaciens (locus AAD23400) and other similar
sequences are present in this CD.
Length = 446
Score = 27.9 bits (63), Expect = 0.43
Identities = 10/51 (19%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 3 DKLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDER 53
+GD + G V +K +D++ ++ AK+ +++ GG+ +
Sbjct: 280 KAAVVGDGLDPGTTLGPVQNKMQYDKVKELVEDAKAK-GAKVLAGGEPLDG 329
>gnl|CDD|143448 cd07130, ALDH_F7_AASADH, NAD+-dependent alpha-aminoadipic
semialdehyde dehydrogenase, ALDH family members 7A1 and
7B. Alpha-aminoadipic semialdehyde dehydrogenase
(AASADH, EC=1.2.1.31), also known as ALDH7A1,
Antiquitin-1, ALDH7B, or
delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH),
is a NAD+-dependent ALDH. Human ALDH7A1 is involved in
the pipecolic acid pathway of lysine catabolism,
catalyzing the oxidation of alpha-aminoadipic
semialdehyde to alpha-aminoadipate. Arabidopsis
thaliana ALDH7B4 appears to be an
osmotic-stress-inducible ALDH gene encoding a
turgor-responsive or stress-inducible ALDH. The
Streptomyces clavuligerus P6CDH appears to be involved
in cephamycin biosynthesis, catalyzing the second stage
of the two-step conversion of lysine to
alpha-aminoadipic acid. The ALDH7A1 enzyme and others
in this group have been observed as tetramers, yet the
bacterial P6CDH enzyme has been reported as a monomer.
Length = 474
Score = 27.9 bits (63), Expect = 0.46
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 4 KLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDERG 54
+++IGD + G + K A D I+ AKS ++ GG+ +
Sbjct: 304 QVRIGDPLDDGTLVGPLHTKAAVDNYLAAIEEAKSQGG-TVLFGGKVIDGP 353
>gnl|CDD|143465 cd07147, ALDH_F21_RNP123, Aldehyde dehydrogenase family 21A1-like.
Aldehyde dehydrogenase ALDH21A1 (gene name RNP123) was
first described in the moss Tortula ruralis and is
believed to play an important role in the detoxification
of aldehydes generated in response to desiccation- and
salinity-stress, and ALDH21A1 expression represents a
unique stress tolerance mechanism. So far, of plants,
only the bryophyte sequence has been observed, but
similar protein sequences from bacteria and archaea are
also present in this CD.
Length = 452
Score = 28.0 bits (63), Expect = 0.47
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 4 KLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHA 36
LK GD + + G +I + +R+ G++ A
Sbjct: 289 ALKTGDPKDDATDVGPMISESEAERVEGWVNEA 321
>gnl|CDD|143468 cd07150, ALDH_VaniDH_like, Pseudomonas putida vanillin
dehydrogenase-like. Vanillin dehydrogenase (Vdh,
VaniDH) involved in the metabolism of ferulic acid and
other related sequences are included in this CD. The
E. coli vanillin dehydrogenase (LigV) preferred NAD+ to
NADP+ and exhibited a broad substrate preference,
including vanillin, benzaldehyde, protocatechualdehyde,
m-anisaldehyde, and p-hydroxybenzaldehyde.
Length = 451
Score = 27.7 bits (62), Expect = 0.49
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 4 KLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYD 51
KLK+GD D+ G +I + +RI ++ A + +++ GG+YD
Sbjct: 288 KLKVGDPRDPDTVIGPLISPRQVERIKRQVEDAVAK-GAKLLTGGKYD 334
>gnl|CDD|185388 PRK15491, PRK15491, replication factor A; Provisional.
Length = 374
Score = 27.5 bits (61), Expect = 0.57
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 11/67 (16%)
Query: 3 DKLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDERGERVKESSD 62
D +K GD+E S I+GY K S + I G E E VK S +
Sbjct: 117 DLIKTGDIEVGKSL-----------NISGYAKEGYSGIEVNIGRYGGISESDENVKASIN 165
Query: 63 LEDLAFI 69
+ ++ I
Sbjct: 166 SQKISDI 172
>gnl|CDD|143401 cd07082, ALDH_F11_NP-GAPDH, NADP+-dependent non-phosphorylating
glyceraldehyde 3-phosphate dehydrogenase and ALDH family
11. NADP+-dependent non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase (NP-GAPDH, EC=1.2.1.9)
catalyzes the irreversible oxidation of glyceraldehyde
3-phosphate to 3-phosphoglycerate generating NADPH for
biosynthetic reactions. This CD also includes the
Arabidopsis thaliana osmotic-stress-inducible ALDH
family 11, ALDH11A3 and similar sequences. In
autotrophic eukaryotes, NP-GAPDH generates NADPH for
biosynthetic processes from photosynthetic
glyceraldehyde-3-phosphate exported from the chloroplast
and catalyzes one of the classic glycolytic bypass
reactions unique to plants.
Length = 473
Score = 27.5 bits (62), Expect = 0.63
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 2 LDKLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKS 38
+ KLK+G +ID K+ D + G I A +
Sbjct: 306 VAKLKVGMPWDNGVDITPLIDPKSADFVEGLIDDAVA 342
>gnl|CDD|212007 TIGR04284, aldehy_Rv0768, aldehyde dehydrogenase, Rv0768 family.
This family describes a branch of the aldehyde
dehydrogenase (NAD) family (see pfam00171) that includes
Rv0768 from Mycobacterium tuberculosis. All members of
this family belong to species predicted to synthesize
mycofactocin, suggesting that this enzyme or another
upstream or downstream in the same pathway might be
mycofactocin-dependent. However, the taxonomic range of
this family is not nearly broad enough to make that
relationship conclusive [Unknown function, Enzymes of
unknown specificity].
Length = 480
Score = 27.0 bits (60), Expect = 0.90
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 5 LKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDER 53
+K GD + G VI + DR+ Y+ A + GGG+ +R
Sbjct: 312 IKPGDPADPGTVCGPVISARQRDRVQSYLDLAVAEGGRFACGGGRPADR 360
>gnl|CDD|143431 cd07113, ALDH_PADH_NahF, Escherichia coli NAD+-dependent
phenylacetaldehyde dehydrogenase PadA-like.
NAD+-dependent, homodimeric, phenylacetaldehyde
dehydrogenase (PADH, EC=1.2.1.39) PadA of Escherichia
coli involved in the catabolism of 2-phenylethylamine,
and other related sequences, are present in this CD.
Also included is the Pseudomonas fluorescens ST StyD
PADH involved in styrene catabolism, the Sphingomonas
sp. LB126 FldD protein involved in fluorene degradation,
and the Novosphingobium aromaticivorans NahF
salicylaldehyde dehydrogenase involved in the
NAD+-dependent conversion of salicylaldehyde to
salicylate.
Length = 477
Score = 27.0 bits (60), Expect = 0.98
Identities = 11/57 (19%), Positives = 24/57 (42%)
Query: 2 LDKLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDERGERVK 58
L ++G G + ++ FD++ Y+ A++ + + GG G V+
Sbjct: 308 LSSFQVGSPMDESVMFGPLANQPHFDKVCSYLDDARAEGDEIVRGGEALAGEGYFVQ 364
>gnl|CDD|143438 cd07120, ALDH_PsfA-ACA09737, Pseudomonas putida aldehyde
dehydrogenase PsfA (ACA09737)-like. Included in this CD
is the aldehyde dehydrogenase (PsfA, locus ACA09737) of
Pseudomonas putida involved in furoic acid metabolism.
Transcription of psfA was induced in response to
2-furoic acid, furfuryl alcohol, and furfural.
Length = 455
Score = 26.5 bits (59), Expect = 1.4
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 9/78 (11%)
Query: 2 LDKLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDERGERVKESS 61
L +K+G S G +ID+ DR+ ++ A ++ G + RG V E
Sbjct: 285 LAAVKVGPGLDPASDMGPLIDRANVDRVDRMVERAIAA-------GAEVVLRGGPVTE-- 335
Query: 62 DLEDLAFIARNTLRHLSS 79
L AF+ L
Sbjct: 336 GLAKGAFLRPTLLEVDDP 353
>gnl|CDD|143433 cd07115, ALDH_HMSADH_HapE, Pseudomonas fluorescens 4-hydroxymuconic
semialdehyde dehydrogenase-like. 4-hydroxymuconic
semialdehyde dehydrogenase (HapE, EC=1.2.1.61) of
Pseudomonas fluorescens ACB involved in
4-hydroxyacetophenone degradation, and putative
hydroxycaproate semialdehyde dehydrogenase (ChnE) of
Brachymonas petroleovorans involved in cyclohexane
metabolism, and other similar sequences, are present in
this CD.
Length = 453
Score = 26.6 bits (59), Expect = 1.4
Identities = 12/51 (23%), Positives = 22/51 (43%)
Query: 4 KLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDERG 54
L+ GD + G ++ + FDR+ Y+ + + GG + RG
Sbjct: 286 SLRPGDPLDPKTQMGPLVSQAQFDRVLDYVDVGREEGARLLTGGKRPGARG 336
>gnl|CDD|143457 cd07139, ALDH_AldA-Rv0768, Mycobacterium tuberculosis aldehyde
dehydrogenase AldA-like. The Mycobacterium
tuberculosis NAD+-dependent, aldehyde dehydrogenase PDB
structure, 3B4W, and the Mycobacterium tuberculosis
H37Rv aldehyde dehydrogenase AldA (locus Rv0768)
sequence, as well as the Rhodococcus rhodochrous ALDH
involved in haloalkane catabolism, and other similar
sequences, are included in this CD.
Length = 471
Score = 26.4 bits (59), Expect = 1.5
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 1 MLDKLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQ 49
+ LK+GD + G + + +R+ GYI ++ + GGG+
Sbjct: 302 AVAALKVGDPLDPATQIGPLASARQRERVEGYIAKGRAEGARLVTGGGR 350
>gnl|CDD|143456 cd07138, ALDH_CddD_SSP0762, Rhodococcus ruber 6-oxolauric acid
dehydrogenase-like. The 6-oxolauric acid dehydrogenase
(CddD) from Rhodococcus ruber SC1 which converts
6-oxolauric acid to dodecanedioic acid, and the aldehyde
dehydrogenase (locus SSP0762) from Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305 and other
similar sequences, are included in this CD.
Length = 466
Score = 26.3 bits (59), Expect = 1.6
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 3 DKLKIGDVEYTDSFAGAVIDKKAFDRITGYIK 34
+ +GD + G + FDR+ GYI+
Sbjct: 298 EAYVVGDPRDPATTLGPLASAAQFDRVQGYIQ 329
>gnl|CDD|143432 cd07114, ALDH_DhaS, Uncharacterized Candidatus pelagibacter
aldehyde dehydrogenase, DhaS-like. Uncharacterized
aldehyde dehydrogenase from Candidatus pelagibacter
(DhaS) and other related sequences are present in this
CD.
Length = 457
Score = 26.0 bits (58), Expect = 1.8
Identities = 7/52 (13%), Positives = 22/52 (42%)
Query: 3 DKLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDERG 54
+++GD ++ G + ++ +++ Y+ A+ + GG +
Sbjct: 287 RAIRVGDPLDPETQMGPLATERQLEKVERYVARAREEGARVLTGGERPSGAD 338
>gnl|CDD|226683 COG4230, COG4230, Delta 1-pyrroline-5-carboxylate dehydrogenase
[Energy production and conversion].
Length = 769
Score = 26.2 bits (58), Expect = 1.9
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 2 LDKLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKS 38
+ +L++G+ + + G VID +A I +I+ +S
Sbjct: 406 MAELRVGNPDRLTTDVGPVIDAEAKANIEKHIQTMRS 442
>gnl|CDD|183050 PRK11241, gabD, succinate-semialdehyde dehydrogenase I;
Provisional.
Length = 482
Score = 25.6 bits (56), Expect = 2.6
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 4 KLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDERGERVKESSDL 63
KL IGD G +ID+KA ++ +I A ++ GG+ E G + + L
Sbjct: 315 KLHIGDGLEKGVTIGPLIDEKAVAKVEEHIADALEK-GARVVCGGKAHELGGNFFQPTIL 373
Query: 64 EDL 66
D+
Sbjct: 374 VDV 376
>gnl|CDD|200131 TIGR01804, BADH, glycine betaine aldehyde dehydrogenase. Under
osmotic stress, betaine aldehyde dehydrogenase oxidizes
glycine betaine aldehyde into the osmoprotectant glycine
betaine, via the second of two oxidation steps from
exogenously supplied choline or betaine aldehyde. This
choline-glycine betaine synthesis pathway can be found
in gram-positive and gram-negative bacteria. In
Escherichia coli, betaine aldehyde dehydrogenase (betB)
is osmotically co-induced with choline dehydrogenase
(betA) in the presence of choline. These dehydrogenases
are located in a betaine gene cluster with the upstream
choline transporter (betT) and transcriptional regulator
(betI). Similar to E.coli, betaine synthesis in
Staphylococcus xylosus is also influenced by osmotic
stress and the presence of choline with genes localized
in a functionally equivalent gene cluster. Organization
of the betaine gene cluster in Sinorhizobium meliloti
and Bacillus subtilis differs from that of E.coli by the
absence of upstream choline transporter and
transcriptional regulator homologues. Additionally,
B.subtilis co-expresses a type II alcohol dehydrogenase
with betaine aldehyde dehydrogenase instead of choline
dehydrogenase as in E.coli, St.xylosus, and Si.meliloti.
Betaine aldehyde dehydrogenase is a member of the
aldehyde dehydrogenase family (pfam00171) [Cellular
processes, Adaptations to atypical conditions].
Length = 467
Score = 25.5 bits (56), Expect = 2.9
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
Query: 4 KLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDERGERVKESSDL 63
++K+GD + G +I D++ YI+ K+ GGG E+ L
Sbjct: 302 RIKLGDPFDEATEMGPLISAAHRDKVLSYIEKGKAEGATLATGGG--------RPENVGL 353
Query: 64 EDLAFIA 70
++ F+
Sbjct: 354 QNGFFVE 360
>gnl|CDD|143413 cd07094, ALDH_F21_LactADH-like, ALDH subfamily: NAD+-dependent,
lactaldehyde dehydrogenase, ALDH family 21 A1, and
related proteins. ALDH subfamily which includes Tortula
ruralis aldehyde dehydrogenase ALDH21A1 (RNP123), and
NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22)
and like sequences.
Length = 453
Score = 25.1 bits (55), Expect = 4.2
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 4 KLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDER 53
KLK+GD D+ G +I ++A +R+ +++ A + ++ GG+ D
Sbjct: 290 KLKVGDPLDEDTDVGPLISEEAAERVERWVEEAVEA-GARLLCGGERDGA 338
>gnl|CDD|181038 PRK07570, PRK07570, succinate dehydrogenase/fumarate reductase
iron-sulfur subunit; Validated.
Length = 250
Score = 24.8 bits (55), Expect = 4.8
Identities = 8/17 (47%), Positives = 11/17 (64%), Gaps = 3/17 (17%)
Query: 20 VIDKKAFDRIT---GYI 33
V+D+ A DRI GY+
Sbjct: 114 VVDRSALDRIIQAGGYV 130
>gnl|CDD|143411 cd07092, ALDH_ABALDH-YdcW, Escherichia coli NAD+-dependent
gamma-aminobutyraldehyde dehydrogenase YdcW-like.
NAD+-dependent, tetrameric, gamma-aminobutyraldehyde
dehydrogenase (ABALDH), YdcW of Escherichia coli K12,
catalyzes the oxidation of gamma-aminobutyraldehyde to
gamma-aminobutyric acid. ABALDH can also oxidize n-alkyl
medium-chain aldehydes, but with a lower catalytic
efficiency.
Length = 450
Score = 25.0 bits (55), Expect = 4.8
Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 9/55 (16%)
Query: 4 KLKIGDVEYTDSFAGAVIDKKAFDRITGYI----KHAKSSPNLEIIGGGQYDERG 54
+++GD + D+ G + +R+ G++ HA+ + GG + + G
Sbjct: 286 AIRVGDPDDEDTEMGPLNSAAQRERVAGFVERAPAHARV-----LTGGRRAEGPG 335
>gnl|CDD|233936 TIGR02578, cas_TM1811_Csm1, CRISPR-associated protein Cas10/Csm1,
subtype III-A/MTUBE. The family is designated Csm2,
for CRISPR/Cas Subtype Mtube Protein 2. A typical
example is TM1811 from Thermotoga maritima. CRISPR are
Clustered Regularly Interspaced Short Palindromic
Repeats. This protein family belongs to a conserved
gene cluster regularly found near CRISPR repeats
[Mobile and extrachromosomal element functions, Other].
Length = 648
Score = 25.1 bits (55), Expect = 4.9
Identities = 7/39 (17%), Positives = 14/39 (35%)
Query: 32 YIKHAKSSPNLEIIGGGQYDERGERVKESSDLEDLAFIA 70
+I + LE++ D VK + + L +
Sbjct: 34 FIHEFFKNALLEVLDKKADDLLKNLVKSHHEEDYLDDLI 72
>gnl|CDD|143463 cd07145, ALDH_LactADH_F420-Bios, Methanocaldococcus jannaschii
NAD+-dependent lactaldehyde dehydrogenase-like.
NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22)
involved the biosynthesis of coenzyme F(420) in
Methanocaldococcus jannaschii through the oxidation of
lactaldehyde to lactate and generation of NAPH, and
similar sequences are included in this CD.
Length = 456
Score = 25.0 bits (55), Expect = 5.1
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 4 KLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGG 47
KLK+GD + G +I +A +R+ + A + GG
Sbjct: 292 KLKVGDPLDESTDLGPLISPEAVERMENLVNDAVEKGGKILYGG 335
>gnl|CDD|233840 TIGR02386, rpoC_TIGR, DNA-directed RNA polymerase, beta' subunit,
predominant form. Bacteria have a single DNA-directed
RNA polymerase, with required subunits that include
alpha, beta, and beta-prime. This model describes the
predominant architecture of the beta-prime subunit in
most bacteria. This model excludes from among the
bacterial mostly sequences from the cyanobacteria, where
RpoC is replaced by two tandem genes homologous to it but
also encoding an additional domain [Transcription,
DNA-dependent RNA polymerase].
Length = 1140
Score = 24.6 bits (54), Expect = 6.5
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 1 MLDKLKIGDVEYTDSFAGAVIDKKAFD 27
ML K++I D ++ G +ID F+
Sbjct: 1032 MLRKVRITDSGDSNLLPGELIDIHEFN 1058
>gnl|CDD|184704 PRK14486, PRK14486, putative bifunctional cbb3-type cytochrome c
oxidase subunit II/cytochrome c; Provisional.
Length = 294
Score = 24.4 bits (53), Expect = 7.1
Identities = 11/51 (21%), Positives = 20/51 (39%)
Query: 1 MLDKLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYD 51
K++ YTD+ A+ K D + Y++ + GG + D
Sbjct: 151 TQRKMRALGFPYTDADLAALAGKTEMDAMVAYMQSLGKAIPRRAAGGAEVD 201
>gnl|CDD|143451 cd07133, ALDH_CALDH_CalB, Coniferyl aldehyde dehydrogenase-like.
Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of
Pseudomonas sp. strain HR199 (CalB) which catalyzes the
NAD+-dependent oxidation of coniferyl aldehyde to
ferulic acid, and similar sequences, are present in this
CD.
Length = 434
Score = 24.4 bits (54), Expect = 8.0
Identities = 6/28 (21%), Positives = 18/28 (64%), Gaps = 5/28 (17%)
Query: 11 EYTDSFAGAVIDKKAFDRITGYIKHAKS 38
+YT ++I+++ + R+ G ++ A++
Sbjct: 277 DYT-----SIINERHYARLQGLLEDARA 299
>gnl|CDD|235176 PRK03932, asnC, asparaginyl-tRNA synthetase; Validated.
Length = 450
Score = 23.9 bits (53), Expect = 9.9
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 5/29 (17%)
Query: 43 EIIGGGQ----YDERGERVKESS-DLEDL 66
EIIGG Q D R+KE + ED
Sbjct: 373 EIIGGSQREERLDVLEARIKELGLNKEDY 401
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.136 0.372
Gapped
Lambda K H
0.267 0.0753 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,173,883
Number of extensions: 337382
Number of successful extensions: 284
Number of sequences better than 10.0: 1
Number of HSP's gapped: 283
Number of HSP's successfully gapped: 73
Length of query: 79
Length of database: 10,937,602
Length adjustment: 48
Effective length of query: 31
Effective length of database: 8,808,610
Effective search space: 273066910
Effective search space used: 273066910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.1 bits)