RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1962
(79 letters)
>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino
acid metabolism, proline inhibition, oxidoreductase;
HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A*
3v9j_A* 3v9g_A 3v9h_A 3v9i_A
Length = 563
Score = 69.2 bits (170), Expect = 8e-16
Identities = 25/52 (48%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Query: 2 LDKLKIGD-VEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDE 52
++K+GD E +F AVID KAF RI +++HA+SSP+L I+ GGQ +E
Sbjct: 372 HSRIKVGDPAEDFGTFFSAVIDAKAFARIKKWLEHARSSPSLSILAGGQCNE 423
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox
control, apoptosis, NAD binding, oxidoreductase,
PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Length = 538
Score = 54.9 bits (133), Expect = 9e-11
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 4 KLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDERG 54
L +GD D++ G VID+KAF++I YI+ K L + GG G
Sbjct: 347 NLTVGDPTNRDNYMGPVIDEKAFEKIMSYIEIGKKEGRL-MTGGEGDSSTG 396
>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 1.4A {Thermus thermophilus} SCOP:
c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A*
2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A
2iy6_A* 2j40_A* 2j5n_A*
Length = 516
Score = 42.9 bits (102), Expect = 1e-06
Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 3 DKLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDERG 54
++L +G E + G V+ + ++ YI+ K+ L ++GG + + G
Sbjct: 347 ERLSVGPAE-ENPDLGPVVSAEQERKVLSYIEIGKNEGQL-VLGGKRLEGEG 396
>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein
structure initiative, nysgrc, P biology; HET: MSE NAD;
2.01A {Sinorhizobium meliloti} PDB: 4dal_A*
Length = 498
Score = 42.9 bits (102), Expect = 1e-06
Identities = 11/52 (21%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 4 KLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQ-YDERG 54
++ + T++ G +I ++ DR+ +++ A ++EI GG+ + G
Sbjct: 329 TIRYNLDDDTENEIGPLISRRQRDRVASFVERAADQKHIEITTGGRTGSDEG 380
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence,
kinetics, oxidor; 2.10A {Escherichia coli} SCOP:
c.82.1.1 PDB: 1wnb_A
Length = 495
Score = 42.5 bits (101), Expect = 2e-06
Identities = 11/52 (21%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 4 KLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEII-GGGQYDERG 54
LK G + + G + +R+ ++ AK++ ++++I GG + G
Sbjct: 327 TLKSGAPDDESTELGPLSSLAHLERVGKAVEEAKATGHIKVITGGEKRKGNG 378
>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic,
oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP:
c.82.1.1 PDB: 1o9j_A* 1bi9_A*
Length = 501
Score = 41.8 bits (99), Expect = 4e-06
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 4 KLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDERG 54
K +G+ G IDK+ +++I I+ K GGG + +G
Sbjct: 329 KYVLGNPLTPGVSQGPQIDKEQYEKILDLIESGKKEGAKLECGGGPWGNKG 379
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH,
isomerization, oxidoreductase; HET: NAD; 1.42A {Homo
sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A*
1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A*
3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A*
3n81_A 3n82_A* 3n83_A* ...
Length = 500
Score = 41.4 bits (98), Expect = 5e-06
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 4 KLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDERG 54
+G+ + + G +D+ F +I GYI K + GGG +RG
Sbjct: 328 SRVVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGGIAADRG 378
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH,
oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A*
2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A*
3rhl_A*
Length = 517
Score = 40.6 bits (96), Expect = 7e-06
Identities = 11/51 (21%), Positives = 19/51 (37%)
Query: 4 KLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDERG 54
K+KIG+ D+ G + ++ Y + + GG Q G
Sbjct: 348 KMKIGNPLERDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGNQVPRPG 398
>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase;
proline utilization A, PUTA, flavoenzyme, structural
genomic biology; HET: FAD MES; 2.20A {Geobacter
sulfurreducens}
Length = 1026
Score = 39.6 bits (93), Expect = 2e-05
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 1 MLDKLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDERG 54
M K+G E ++ GAV D KA I Y + K ++ + G
Sbjct: 838 MAKATKVGPSEDPANYMGAVADDKAMKSIKEYAEIGKREGHV-LYESPVPAGEG 890
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme,
1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase;
HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Length = 1001
Score = 39.4 bits (92), Expect = 3e-05
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 1 MLDKLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKS 38
+LKIGD + G VID +A R+ +I K+
Sbjct: 817 AARELKIGDPSDVATHVGPVIDVEAKQRLDAHIARMKT 854
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Length = 517
Score = 38.7 bits (91), Expect = 4e-05
Identities = 11/53 (20%), Positives = 22/53 (41%)
Query: 4 KLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDERGER 56
+ +GD + G ++ K +++ YI+ K+ I GGG +
Sbjct: 318 AMILGDPLDYATHLGPLVSKAQQEKVLSYIEKGKAEGATLITGGGIPNNVAGE 370
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde
oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB:
1bpw_A*
Length = 503
Score = 36.8 bits (86), Expect = 2e-04
Identities = 13/56 (23%), Positives = 25/56 (44%)
Query: 4 KLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDERGERVKE 59
+ +GD T++ G +I K D++ G++ AK + GG ++K
Sbjct: 323 AIVVGDPLLTETRMGGLISKPQLDKVLGFVAQAKKEGARVLCGGEPLTPSDPKLKN 378
>2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP
complex, oxidoreductase; HET: NAP CSO; 2.10A
{Pseudomonas aeruginosa} PDB: 2wme_A* 2wox_A* 3zqa_A*
2xdr_A*
Length = 490
Score = 36.7 bits (86), Expect = 2e-04
Identities = 9/51 (17%), Positives = 25/51 (49%)
Query: 4 KLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDERG 54
++++GD + ++ G ++ + + GYI+ K+ + GG + +
Sbjct: 312 RIRLGDPQDENTNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTDGA 362
>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti
deseases, NAD, oxidoreductase, PSI; 1.70A
{Staphylococcus aureus} PDB: 3fg0_A*
Length = 520
Score = 36.4 bits (85), Expect = 2e-04
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 4 KLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDERG 54
K+K+G+ D+ G VI + ++I Y+ AK+ +GG + D
Sbjct: 339 KIKLGNGFDADTEMGPVISTEHRNKIESYMDVAKAEGATIAVGGKRPDRDD 389
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine
aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD;
2.15A {Pisum sativum} PDB: 3iwk_A* 4a0m_A*
Length = 503
Score = 36.0 bits (84), Expect = 4e-04
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 4 KLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKS 38
+KI D G V+ + +++I ++ +AKS
Sbjct: 320 NIKISDPLEEGCRLGPVVSEGQYEKILKFVSNAKS 354
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc,
structural genomics, NEW YORK structura genomics
research consortium, tetramer; 2.00A {Sinorhizobium
meliloti}
Length = 528
Score = 36.0 bits (84), Expect = 4e-04
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 4 KLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYD-ERG 54
K+ GD + GA+I + +++ Y+ +S ++GG + E G
Sbjct: 330 KVAFGDPLNERTKIGAMISEAHAEKVHSYVTAGITSGAELLLGGERIGREAG 381
>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC;
HET: NAD; 2.10A {Thermus thermophilus}
Length = 515
Score = 35.2 bits (82), Expect = 7e-04
Identities = 7/35 (20%), Positives = 17/35 (48%)
Query: 4 KLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKS 38
+++G ++ G +I + R+ GY++ K
Sbjct: 331 AIRVGHPLDPETEVGPLIHPEHLQRVLGYVEAGKR 365
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
NAD; 1.82A {Pseudomonas aeruginosa}
Length = 490
Score = 33.7 bits (78), Expect = 0.003
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 4 KLKIGD-VEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDERG 54
L++G E F GAVI A + + +H ++ Q +
Sbjct: 309 TLRVGRFDEQPAPFMGAVISLSAAEHLLKAQEHLIGKGAQPLLAMTQPIDGA 360
>3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.57A {Corynebacterium glutamicum}
Length = 508
Score = 33.3 bits (77), Expect = 0.003
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 4 KLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKS 38
+ GD + G VI+ + I+ AK
Sbjct: 320 NIPTGDPSAEGTLVGPVINDSQLSGLKEKIELAKK 354
>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann
fold, oxidoreductase; 1.48A {Homo sapiens} PDB: 3szb_A*
1ad3_A*
Length = 469
Score = 32.9 bits (76), Expect = 0.004
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 6/35 (17%)
Query: 18 GAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDE 52
G +I + F R+ G I+ K + GG D
Sbjct: 299 GRIISARHFQRVMGLIEGQK------VAYGGTGDA 327
>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase,
oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo
sapiens} PDB: 2jg7_A*
Length = 500
Score = 32.9 bits (76), Expect = 0.005
Identities = 10/51 (19%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 4 KLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDERG 54
++++G+ + G + K+A G ++ AK ++ GG+ +R
Sbjct: 329 QIRVGNPWDPNVLYGPLHTKQAVSMFLGAVEEAKKE-GGTVVYGGKVMDRP 378
>2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP,
nucleotide-binding; HET: NAP; 1.40A {Burkholderia
xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A*
Length = 534
Score = 31.9 bits (73), Expect = 0.011
Identities = 8/69 (11%), Positives = 22/69 (31%), Gaps = 7/69 (10%)
Query: 2 LDKLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDERGERVKESS 61
L K+ +G+ G+++ ++ ++ + I + +
Sbjct: 323 LAKITVGNPRNDAVRMGSLVSREQYENVLAGIAALREE-AVLAYDSSAVPLIDA------ 375
Query: 62 DLEDLAFIA 70
D A +A
Sbjct: 376 DANIAACVA 384
>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural
genomics, protein structure initiative, dehydroge
PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*
Length = 505
Score = 31.4 bits (72), Expect = 0.016
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 4 KLKIGD-VEYTDSFAGAVIDKKAFDRITGYIKHAKS 38
+L +G + D VID+K+ I G I A
Sbjct: 319 QLTVGSPEDDAD--ITPVIDEKSAAFIQGLIDDALE 352
>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.00A {Bartonella henselae}
Length = 497
Score = 31.4 bits (72), Expect = 0.016
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 3 DKLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKS 38
+K ++G T + G V+ K+ +D+I I+
Sbjct: 328 EKTQVGPGHQTGNHIGPVVSKEQYDKIQDLIQSGID 363
>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE; 2.40A {Staphylococcus aureus}
Length = 478
Score = 31.0 bits (71), Expect = 0.021
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 3 DKLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKS 38
++++G+ + G +I KK FD++ YI
Sbjct: 307 SQVRVGNPREDGTQVGPIISKKQFDQVQNYINKGIE 342
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase;
oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Length = 486
Score = 31.0 bits (71), Expect = 0.024
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 4 KLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHA 36
+KIG+ F G VI + R YI+
Sbjct: 309 DIKIGNGLDDGVFLGPVIREDNKKRTLSYIEKG 341
>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure
initiative, nysgrc, P biology, oxidoreductase; 1.50A
{Methanocaldococcus jannaschii} PDB: 3rhd_A*
Length = 486
Score = 30.6 bits (70), Expect = 0.026
Identities = 5/35 (14%), Positives = 14/35 (40%)
Query: 4 KLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKS 38
L +G+ + G +I + + + ++ A
Sbjct: 301 VLNVGNPLDEKTDVGPLISVEHAEWVEKVVEKAID 335
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics,
protein structure INI nysgrc, PSI-biology; 2.90A
{Sinorhizobium meliloti}
Length = 521
Score = 30.7 bits (70), Expect = 0.033
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 4 KLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKS 38
L+IG + G V+ K+A RI I
Sbjct: 331 SLRIGPYTDEKADMGPVVTKEAEQRIRSLIDSGIE 365
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics,
PSI-2, protein STR initiative; HET: NAD GOL; 1.80A
{Mycobacterium tuberculosis}
Length = 495
Score = 30.6 bits (70), Expect = 0.034
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 1 MLDKLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKS 38
+ L +G + G +I +K R+ GYI
Sbjct: 311 FVTALPVGPPSDPAAQIGPLISEKQRTRVEGYIAKGIE 348
>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH,
glucose 1-phosphate, glycolysis, regulation, catatysis,
oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax}
SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A*
1uxu_A* 1uxv_A* 1ky8_A*
Length = 501
Score = 30.2 bits (69), Expect = 0.035
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 4 KLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKS 38
L++GD G +I A D + I+ A
Sbjct: 323 SLRVGDPRDPTVDVGPLISPSAVDEMMAAIEDAVE 357
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate
dehydrogenase; oxidoreductase; 1.82A {Streptococcus
mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A*
2qe0_A* 2esd_A* 1qi1_A*
Length = 475
Score = 29.8 bits (68), Expect = 0.055
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 4 KLKIGD-VEYTDSFAGAVIDKKAFDRITGYIKHAKS 38
L IG+ + D +ID K+ D + G I A
Sbjct: 310 ALTIGNPEDDAD--ITPLIDTKSADYVEGLINDAND 343
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.2 bits (62), Expect = 0.20
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 49 QYDERGERVKESSDLEDLAFIA 70
+ E+ E+ K ++ + D AF
Sbjct: 126 RQSEQVEKNKINNRIADKAFYQ 147
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 0.37
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 13/49 (26%)
Query: 20 VI--DKKAFDRITGYIKHAKSSPNLEIIGGGQYDERGERVKESSDLEDL 66
V D +A D +T + K ++II +++S LE++
Sbjct: 1854 VAAGDLRALDTVTNVLNFIK-LQKIDII----------ELQKSLSLEEV 1891
Score = 27.3 bits (60), Expect = 0.49
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 9/53 (16%)
Query: 36 AKSSPNLEIIG--GGQ-----Y-DERGERVKESSDL-EDLAFIARNTLRHLSS 79
A N +++ GGQ Y +E + + L DL + TL L
Sbjct: 148 AVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIR 200
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA
ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces
cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A*
1asz_A*
Length = 487
Score = 27.3 bits (61), Expect = 0.40
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 5/34 (14%)
Query: 40 PNLEIIGGGQ----YDERGERVKESS-DLEDLAF 68
EI+ G Q + ER+K ED
Sbjct: 405 RGEEILSGAQRIHDHALLQERMKAHGLSPEDPGL 438
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus
thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Length = 422
Score = 27.1 bits (61), Expect = 0.44
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 5/34 (14%)
Query: 40 PNLEIIGGGQ----YDERGERVKESS-DLEDLAF 68
LEI GGQ Y+E E +K D E
Sbjct: 342 RGLEITSGGQRIHRYEELLESLKAKGMDPEAFHG 375
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE;
2.30A {Sulfolobus tokodaii}
Length = 429
Score = 26.8 bits (60), Expect = 0.71
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 5/34 (14%)
Query: 40 PNLEIIGGGQ----YDERGERVKESS-DLEDLAF 68
LEI+ G + E +K+ E F
Sbjct: 349 KFLEIVSGSTRNHKREVLEEALKKKGLKPESFEF 382
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding,
aminoacyl-tRNA synthetase, LI nucleotide-binding,
protein biosynthesis; 2.80A {Entamoeba histolytica}
Length = 548
Score = 26.7 bits (59), Expect = 0.77
Identities = 8/34 (23%), Positives = 10/34 (29%), Gaps = 5/34 (14%)
Query: 40 PNLEIIGGGQ----YDERGERVKESS-DLEDLAF 68
EI G Q + +R E D L
Sbjct: 468 RGQEITSGAQRIHDPEFLMKRCIEKGVDPATLKD 501
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO
ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A*
3nen_A 1b8a_A*
Length = 438
Score = 26.0 bits (58), Expect = 1.3
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 40 PNLEIIGGGQ----YDERGERVKESS-DLEDLAF 68
+EI GGQ +D E++KE + E F
Sbjct: 358 RGVEISSGGQREHRHDILVEQIKEKGLNPESFEF 391
>2xut_A Proton/peptide symporter family protein; transport protein,
membrane protein, major facilitator super transporter;
3.62A {Shewanella oneidensis}
Length = 524
Score = 25.4 bits (56), Expect = 1.9
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 5/31 (16%)
Query: 30 TGYIKHAKSSPNLEIIGGGQYDERGERVKES 60
+G IK P + G Q+D+ + + +
Sbjct: 123 SGGIK-----PLVSSFMGDQFDQSNKSLAQK 148
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics,
PSI, protein structure initiative, southeast COLL for
structural genomics; 1.65A {Pyrococcus furiosus} SCOP:
d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A*
3rl6_A*
Length = 294
Score = 24.9 bits (55), Expect = 2.8
Identities = 4/32 (12%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 42 LEIIGGGQ----YDERGERVKESS-DLEDLAF 68
E+ GG+ Y++ +++++ + +
Sbjct: 214 GEVASGGEREWEYEKIVAKIRKAGLNEDSFRP 245
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center
for structural genomics of infectious diseases, CSGI;
1.80A {Vibrio cholerae}
Length = 441
Score = 24.4 bits (54), Expect = 5.1
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 25 AFDRITGYIKHAKSSPNLEIIG 46
FDR + A S PNL++ G
Sbjct: 199 TFDRAAQVYRLAHSLPNLDVHG 220
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; HET: LLP; 2.10A {Brucella melitensis BV}
Length = 443
Score = 24.0 bits (53), Expect = 6.0
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 25 AFDRITGYIKHAKSSPNLEIIG 46
D+ A S P L ++G
Sbjct: 196 PRDKARAAYARAASLPGLNVVG 217
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV,
signaling protein; HET: FAD; 1.65A {Neurospora crassa}
PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A*
3hji_A* 3rh8_B*
Length = 149
Score = 23.8 bits (52), Expect = 7.3
Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 15/59 (25%)
Query: 25 AFDRITGYIKHAKSSPNLEIIG-------GGQYDERGERVKESSDLEDLAFIARNTLRH 76
AF +TGY E++G + + ++ D + + R +
Sbjct: 56 AFLYMTGYSNA-------EVLGRNCRFLQSPDGMVKPKSTRKYVDSNTINTM-RKAIDR 106
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A
{Helicobacter pylori} PDB: 3c5q_A*
Length = 425
Score = 23.6 bits (52), Expect = 7.6
Identities = 5/22 (22%), Positives = 6/22 (27%)
Query: 25 AFDRITGYIKHAKSSPNLEIIG 46
AK S LE +
Sbjct: 180 GEKEALEMFLWAKKSAFLEPVS 201
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding,
protein biosynthesis; HET: NSS; 1.90A {Brugia malayi}
PDB: 2xti_A*
Length = 435
Score = 23.7 bits (52), Expect = 7.8
Identities = 7/21 (33%), Positives = 10/21 (47%), Gaps = 4/21 (19%)
Query: 43 EIIGGGQ----YDERGERVKE 59
EI+GG +DE + K
Sbjct: 358 EIVGGSMRIWKFDELSKAFKN 378
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for
structural G of infectious diseases, transferase; HET:
OAA; 1.84A {Francisella tularensis}
Length = 427
Score = 23.8 bits (52), Expect = 9.1
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 1 MLDKLKIGDVEYTDSFAGAVIDKKAFDRITGY 32
ML + IG E D + DK R+ G+
Sbjct: 279 MLSE--IGSTENIDKYIAKAKDKDDPFRLMGF 308
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics, ligase; HET: 4AD; 1.45A {Pyrococcus
horikoshii} PDB: 1x55_A* 1x56_A
Length = 434
Score = 23.7 bits (52), Expect = 9.4
Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 4/21 (19%)
Query: 43 EIIGGGQ----YDERGERVKE 59
EIIGG Q YD+ R+ E
Sbjct: 357 EIIGGSQREDDYDKLLNRILE 377
>2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for struct
genomics, riken spring-8 center; 1.99A {Aquifex
aeolicus}
Length = 420
Score = 23.6 bits (52), Expect = 9.4
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 25 AFDRITGYIKHAKSSPNLEIIG 46
++A NLEI+G
Sbjct: 179 DIREAQKEYEYASKLENLEIVG 200
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.136 0.372
Gapped
Lambda K H
0.267 0.0717 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,250,909
Number of extensions: 66217
Number of successful extensions: 180
Number of sequences better than 10.0: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 56
Length of query: 79
Length of database: 6,701,793
Length adjustment: 48
Effective length of query: 31
Effective length of database: 5,361,585
Effective search space: 166209135
Effective search space used: 166209135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.4 bits)