RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1962
         (79 letters)



>d1bxsa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
           {Sheep (Ovis aries) [TaxId: 9940]}
          Length = 494

 Score = 44.2 bits (104), Expect = 1e-07
 Identities = 13/54 (24%), Positives = 22/54 (40%)

Query: 1   MLDKLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDERG 54
              K  +G+        G  IDK+ +++I   I+  K        GGG +  +G
Sbjct: 319 RAKKYVLGNPLTPGVSQGPQIDKEQYEKILDLIESGKKEGAKLECGGGPWGNKG 372


>d1o04a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
           {Human (Homo sapiens), mitochondrial [TaxId: 9606]}
          Length = 494

 Score = 43.9 bits (103), Expect = 3e-07
 Identities = 14/51 (27%), Positives = 23/51 (45%)

Query: 4   KLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDERG 54
              +G+   + +  G  +D+  F +I GYI   K      + GGG   +RG
Sbjct: 322 SRVVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGGIAADRG 372


>d1a4sa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
           {Baltic cod (Gadus callarias) [TaxId: 8053]}
          Length = 503

 Score = 37.4 bits (86), Expect = 5e-05
 Identities = 13/59 (22%), Positives = 25/59 (42%)

Query: 1   MLDKLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDERGERVKE 59
               + +GD   T++  G +I K   D++ G++  AK      + GG        ++K 
Sbjct: 320 RTKAIVVGDPLLTETRMGGLISKPQLDKVLGFVAQAKKEGARVLCGGEPLTPSDPKLKN 378


>d1uzba_ c.82.1.1 (A:) 1-pyrroline-5-carboxylate dehydrogenase
           {Thermus thermophilus [TaxId: 274]}
          Length = 516

 Score = 36.4 bits (83), Expect = 1e-04
 Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 1   MLDKLKIGDVEYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDERG 54
             ++L +G  E  +   G V+  +   ++  YI+  K+   L ++GG + +  G
Sbjct: 345 RAERLSVGPAE-ENPDLGPVVSAEQERKVLSYIEIGKNEGQL-VLGGKRLEGEG 396


>g1y43.1 b.29.1.20 (A:1-32,B:3-173) Aspergillopepsin II
          {Aspergillus niger [TaxId: 5061]}
          Length = 203

 Score = 24.4 bits (53), Expect = 1.6
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 10 VEYTDSFAGAVIDKKAFDRITGYIKHAKSSPN 41
           EY+ ++AGAV+    + ++TG       S  
Sbjct: 1  EEYSSNWAGAVLIGDGYTKVTGEFTVPSVSAG 32


>d2gfqa1 c.56.7.1 (A:1-274) Hypothetical protein PH0006 {Pyrococcus
           horikoshii [TaxId: 53953]}
          Length = 274

 Score = 23.7 bits (51), Expect = 2.8
 Identities = 11/47 (23%), Positives = 18/47 (38%)

Query: 11  EYTDSFAGAVIDKKAFDRITGYIKHAKSSPNLEIIGGGQYDERGERV 57
           E+ +  AG +I +     +  Y K          IGGG Y  +  + 
Sbjct: 161 EWINDRAGEIIAETIIYVLDNYEKGRSKFKVALGIGGGHYAPKQTKR 207


>d2iqha1 e.75.1.1 (A:21-489) Nucleocapsid protein {Influenza A virus
           [TaxId: 11320]}
          Length = 469

 Score = 23.0 bits (49), Expect = 5.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 53  RGERVKESSDLEDLAFIARNTL 74
           R  R   +++ EDL F+AR+ L
Sbjct: 223 RESRNPGNAEFEDLIFLARSAL 244


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.136    0.372 

Gapped
Lambda     K      H
   0.267   0.0636    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 295,437
Number of extensions: 12087
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 10
Length of query: 79
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 34
Effective length of database: 1,789,746
Effective search space: 60851364
Effective search space used: 60851364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.1 bits)