BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1963
(250 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WNS|A Chain A, Human Orotate Phosphoribosyltransferase (Oprtase) Domain
Of Uridine 5'-Monophosphate Synthase (Umps) In Complex
With Its Substrate Orotidine 5'-Monophosphate (Omp)
pdb|2WNS|B Chain B, Human Orotate Phosphoribosyltransferase (Oprtase) Domain
Of Uridine 5'-Monophosphate Synthase (Umps) In Complex
With Its Substrate Orotidine 5'-Monophosphate (Omp)
Length = 205
Score = 187 bits (476), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 97/216 (44%), Positives = 135/216 (62%), Gaps = 22/216 (10%)
Query: 8 LNHLCLQLFDIDALKFGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNINKIS 67
L L L+D+ A KFGDFV K G+ +P+Y+DLRGI+S P+L+ ++ I+ IS
Sbjct: 3 LGPLVTGLYDVQAFKFGDFVLKSGLSSPIYIDLRGIVSRPRLLSQVADILFQTAQNAGIS 62
Query: 68 ARTVCGVPYTALPIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGT 127
TVCGVPYTALP+AT + IPMLIRRK+ K YGT
Sbjct: 63 FDTVCGVPYTALPLATVICSTNQIPMLIRRKETKDYGT---------------------- 100
Query: 128 KKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQGGRANLKQ 187
K+L+EG G+ C+IIEDVVTSGSS+LET+ L+ G+ VTD + ++DREQGG+ L+
Sbjct: 101 KRLVEGTINPGETCLIIEDVVTSGSSVLETVEVLQKEGLKVTDAIVLLDREQGGKDKLQA 160
Query: 188 LGYTLHSLFTLSSVMDILYKANKIKVDTVEDVKKYL 223
G LHS+ TLS +++IL + K+ +TV VK+++
Sbjct: 161 HGIRLHSVCTLSKMLEILEQQKKVDAETVGRVKRFI 196
>pdb|3QW4|B Chain B, Structure Of Leishmania Donovani Ump Synthase
pdb|3QW4|C Chain C, Structure Of Leishmania Donovani Ump Synthase
Length = 453
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 117/214 (54%), Gaps = 24/214 (11%)
Query: 10 HLCLQLFDIDALKFGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNINKISAR 69
L L D ++FG+F K G +P+Y+DLR +++YP +M ++ L K
Sbjct: 261 ELAKALVDSHCVRFGNFTLKSGKSSPIYIDLRRLVTYPAIMRLVAREYAKVLRHYKFD-- 318
Query: 70 TVCGVPYTALPIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKK 129
+ G+PY ALPIA+A+S + N+P++ R++ K YGTK
Sbjct: 319 RIAGLPYAALPIASAISNEMNVPLIY----------------------PRREAKIYGTKA 356
Query: 130 LIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQGGRANLKQLG 189
IEG Y+KGD+ VII+D+V++G + +E I L+S G+ V ++ +VDR+ G +A L +LG
Sbjct: 357 AIEGEYKKGDRVVIIDDLVSTGETKVEAIEKLRSAGLEVVSIVVLVDRDMGAKAFLNKLG 416
Query: 190 YTLHSLFTLSSVMDILYKANKIKVDTVEDVKKYL 223
Y ++ L ++ + K+N I DV+ +L
Sbjct: 417 YDFEAVVGLHQLLPLWRKSNAITSQQEADVRAFL 450
>pdb|3M3H|A Chain A, 1.75 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor'
pdb|3OSC|A Chain A, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
pdb|3OSC|B Chain B, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
pdb|3OSC|C Chain C, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
Length = 234
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 84/180 (46%), Gaps = 23/180 (12%)
Query: 26 FVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAV 85
F G+K+P+Y D R +SYPK+ ++ + + + + + + G + A V
Sbjct: 47 FTWSSGMKSPIYCDNRLTLSYPKVRQTIAAGLEELIKEHFPTVEVIAGTATAGIAHAAWV 106
Query: 86 SVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIE 145
S + ++PM R K +G KG++ IEG EKG K V++E
Sbjct: 107 SDRMDLPMCYVRSKAKGHG----------KGNQ------------IEGKAEKGQKVVVVE 144
Query: 146 DVVTSGSSILETINDLKSVGIVVTDVLTIVDRE-QGGRANLKQLGYTLHSLFTLSSVMDI 204
D++++G S + + L+ G V +++I E + G+ L+ +SL S++ ++
Sbjct: 145 DLISTGGSAITCVEALREAGCEVLGIVSIFTYELEAGKEKLEAANVASYSLSDYSALTEV 204
>pdb|2AEE|A Chain A, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Pyogenes
pdb|2AEE|B Chain B, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Pyogenes
Length = 211
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 95/223 (42%), Gaps = 36/223 (16%)
Query: 9 NHLCLQLFDIDA--LKFGD-FVTKVGIKTPVYLDLRGIISYPKLMD-----YLSTIINDY 60
+ + QL DI A LK D F GIK+P+Y D R +SYPK D ++ TI +
Sbjct: 7 SQIATQLLDIKAVYLKPEDPFTWASGIKSPIYTDNRVTLSYPKTRDLIENGFVETIKAHF 66
Query: 61 LNINKISARTVCGVPYTALPIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRK 120
+ I+ G+P+ A+ ++ K +P R K K
Sbjct: 67 PEVEVIAGTATAGIPHGAI-----IADKMTLPFAYIR-------------------SKPK 102
Query: 121 DVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDRE-Q 179
D +G IEG KG K VIIED++++G S+L+ G V V+ I E
Sbjct: 103 D---HGAGNQIEGRVLKGQKMVIIEDLISTGGSVLDAAAAASREGADVLGVVAIFTYELP 159
Query: 180 GGRANLKQLGYTLHSLFTLSSVMDILYKANKIKVDTVEDVKKY 222
N K+ G L +L + ++ + I D + +KK+
Sbjct: 160 KASQNFKEAGIKLITLSNYTELIAVAKLQGYITNDGLHLLKKF 202
>pdb|3DEZ|A Chain A, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Mutans
pdb|3DEZ|B Chain B, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Mutans
Length = 243
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 33/210 (15%)
Query: 26 FVTKVGIKTPVYLDLRGIISYPKLM-----DYLSTIINDYLNINKISARTVCGVPYTALP 80
F GIK+P+Y D R +SYP+ ++ TI + + I+ G+P+ A+
Sbjct: 59 FTWASGIKSPIYTDNRITLSYPETRTLIENGFVETIKEAFPEVEVIAGTATAGIPHGAI- 117
Query: 81 IATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDK 140
++ K N+P+ R K KD +G IEG KG K
Sbjct: 118 ----IADKMNLPLAYIR-------------------SKPKD---HGAGNQIEGRVTKGQK 151
Query: 141 CVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDRE-QGGRANLKQLGYTLHSLFTLS 199
VIIED++++G S+L+ + + G V V+ I E AN ++ L +L S
Sbjct: 152 MVIIEDLISTGGSVLDAVAAAQREGADVLGVVAIFTYELPKATANFEKASVKLVTLSNYS 211
Query: 200 SVMDILYKANKIKVDTVEDVKKYLCNNQVL 229
++ + I D + +KK+ N +
Sbjct: 212 ELIKVAKVQGYIDADGLTLLKKFKENQETW 241
>pdb|1LH0|A Chain A, Crystal Structure Of Salmonella Typhimurium Omp Synthase
In Complex With Mgprpp And Orotate
pdb|1LH0|B Chain B, Crystal Structure Of Salmonella Typhimurium Omp Synthase
In Complex With Mgprpp And Orotate
pdb|1OPR|A Chain A, The Crystal Structure Of The Orotate
Phosphoribosyltransferase Complexed With Orotate And
Alpha-D-5-Phosphoribosyl-1-Pyrophosphate
Length = 213
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 79/174 (45%), Gaps = 30/174 (17%)
Query: 21 LKFGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALP 80
LKFG+F K G K+P + + G+ + + + L + L + I + G Y +P
Sbjct: 18 LKFGEFTLKSGRKSPYFFNA-GLFNTGRDLALLGRFYAEALVDSGIEFDLLFGPAYKGIP 76
Query: 81 IATAVSVKY------NIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGV 134
IAT +V ++P RK+ K +G + G +G
Sbjct: 77 IATTTAVALAEHHDKDLPYCFNRKEAKDHGEGGSLVGSALQG------------------ 118
Query: 135 YEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQGGRANLKQL 188
+ ++++DV+T+G++I E++ +++ G + VL +DR++ GR + +
Sbjct: 119 -----RVMLVDDVITAGTAIRESMEIIQAHGATLAGVLISLDRQERGRGEISAI 167
>pdb|2YZK|A Chain A, Crystal Structure Of Orotate Phosphoribosyltransferase
From Aeropyrum Pernix
pdb|2YZK|B Chain B, Crystal Structure Of Orotate Phosphoribosyltransferase
From Aeropyrum Pernix
pdb|2YZK|C Chain C, Crystal Structure Of Orotate Phosphoribosyltransferase
From Aeropyrum Pernix
pdb|2YZK|D Chain D, Crystal Structure Of Orotate Phosphoribosyltransferase
From Aeropyrum Pernix
Length = 178
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 90/186 (48%), Gaps = 31/186 (16%)
Query: 24 GDFVTKVGIKTPVYLDLRGII----SYPKLMDYLSTIINDYLNINKISARTVCGVPYTAL 79
GDFV G ++ VY+D R ++ SY +D L + ++ + SA V GV L
Sbjct: 15 GDFVLSSGRRSSVYIDXRRLLGDESSYSVALDLLLEVGGQ--DLARSSA--VIGVATGGL 70
Query: 80 PIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGD 139
P A ++++ + P+ R + K +GT +EG KG
Sbjct: 71 PWAAXLALRLSKPLGYVRPERKGHGTLSQVEGDPPKG----------------------- 107
Query: 140 KCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQGGRANLKQLGYTLHSLFTLS 199
+ V+++DV T+G+SI ++I L+S G V L +VDR +G L + G L S+ TL
Sbjct: 108 RVVVVDDVATTGTSIAKSIEVLRSNGYTVGTALVLVDRGEGAGELLARXGVRLVSVATLK 167
Query: 200 SVMDIL 205
++++ L
Sbjct: 168 TILEKL 173
>pdb|1ORO|A Chain A, A Flexible Loop At The Dimer Interface Is A Part Of The
Active Site Of The Adjacent Monomer Of Escherichia Coli
Orotate Phosphoribosyltransferase
pdb|1ORO|B Chain B, A Flexible Loop At The Dimer Interface Is A Part Of The
Active Site Of The Adjacent Monomer Of Escherichia Coli
Orotate Phosphoribosyltransferase
Length = 213
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 79/174 (45%), Gaps = 30/174 (17%)
Query: 21 LKFGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALP 80
LKFG+F K G K+P + + G+ + + + L + L + I + G Y +P
Sbjct: 18 LKFGEFTLKSGRKSPYFFNA-GLFNTGRDLALLGRFYAEALVDSGIEFDLLFGPAYKGIP 76
Query: 81 IATAVSVKY------NIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGV 134
IAT +V ++P RK+ K +G + G +G
Sbjct: 77 IATTTAVALAEHHDLDLPYCFNRKEAKDHGEGGNLVGSALQG------------------ 118
Query: 135 YEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQGGRANLKQL 188
+ ++++DV+T+G++I E++ +++ G + VL +DR++ GR + +
Sbjct: 119 -----RVMLVDDVITAGTAIRESMEIIQANGATLAGVLISLDRQERGRGEISAI 167
>pdb|1STO|A Chain A, Crystal Structure Of Orotate Phosphoribosyltransferase
Length = 213
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 78/174 (44%), Gaps = 30/174 (17%)
Query: 21 LKFGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALP 80
LKFG+F K G K+P + + G+ + + + L + L + I + G Y +P
Sbjct: 18 LKFGEFTLKSGRKSPYFFNA-GLFNTGRDLALLGRFYAEALVDSGIEFDLLFGPAYKGIP 76
Query: 81 IATAVSVKY------NIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGV 134
IAT +V ++P RK K +G + G +G
Sbjct: 77 IATTTAVALAEHHDKDLPYCFNRKAAKDHGEGGSLVGSALQG------------------ 118
Query: 135 YEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQGGRANLKQL 188
+ ++++DV+T+G++I E++ +++ G + VL +DR++ GR + +
Sbjct: 119 -----RVMLVDDVITAGTAIRESMEIIQAHGATLAGVLISLDRQERGRGEISAI 167
>pdb|3N2L|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase (Pyre) From Vibrio Cholerae O1
Bi Str. N16961
pdb|3N2L|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase (Pyre) From Vibrio Cholerae O1
Bi Str. N16961
pdb|3N2L|C Chain C, 2.1 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase (Pyre) From Vibrio Cholerae O1
Bi Str. N16961
pdb|3N2L|D Chain D, 2.1 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase (Pyre) From Vibrio Cholerae O1
Bi Str. N16961
pdb|3N2L|E Chain E, 2.1 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase (Pyre) From Vibrio Cholerae O1
Bi Str. N16961
pdb|3N2L|F Chain F, 2.1 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase (Pyre) From Vibrio Cholerae O1
Bi Str. N16961
pdb|3N2L|G Chain G, 2.1 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase (Pyre) From Vibrio Cholerae O1
Bi Str. N16961
pdb|3N2L|H Chain H, 2.1 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase (Pyre) From Vibrio Cholerae O1
Bi Str. N16961
Length = 238
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 96/215 (44%), Gaps = 38/215 (17%)
Query: 21 LKFGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALP 80
LKFG+F K G K+P + + G+ + + + L L + I + G Y +P
Sbjct: 43 LKFGEFTLKSGRKSPYFFNA-GLFNTGRDLARLGRFYAAALVDSGIEFDVLFGPAYKGIP 101
Query: 81 IATAVSVKY------NIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGV 134
IAT +V + P RK+ K +G EG G K +EG
Sbjct: 102 IATTTAVALADHHDVDTPYCFNRKEAKNHG-----EGGNLVGSK------------LEG- 143
Query: 135 YEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQGGRANL-------KQ 187
+ ++++DV+T+G++I E++ +++ + VL +DR++ G+ L +
Sbjct: 144 -----RVMLVDDVITAGTAIRESMELIQANKADLAGVLVAIDRQEKGKGELSAIQEVERD 198
Query: 188 LGYTLHSLFTLSSVMDILYKANKIKVDTVEDVKKY 222
G + S+ +L+ ++ L + + +E VK Y
Sbjct: 199 FGCAVISIVSLTDLITYLEQQGN-NTEHLEAVKAY 232
>pdb|2PRY|A Chain A, Apo Form Of S. Cerevisiae Orotate
Phosphoribosyltransferase
pdb|2PRZ|A Chain A, S. Cerevisiae Orotate Phosphoribosyltransferase Complexed
With Omp
pdb|2PRZ|B Chain B, S. Cerevisiae Orotate Phosphoribosyltransferase Complexed
With Omp
pdb|2PRZ|C Chain C, S. Cerevisiae Orotate Phosphoribosyltransferase Complexed
With Omp
pdb|2PRZ|D Chain D, S. Cerevisiae Orotate Phosphoribosyltransferase Complexed
With Omp
pdb|2PS1|A Chain A, S. Cerevisiae Orotate Phosphoribosyltransferase Complexed
With Orotic Acid And Prpp
pdb|2PS1|B Chain B, S. Cerevisiae Orotate Phosphoribosyltransferase Complexed
With Orotic Acid And Prpp
Length = 226
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 101/224 (45%), Gaps = 24/224 (10%)
Query: 9 NHLCLQLFDIDALKFGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNINKISA 68
N L L + + AL+FG F K G ++P + +L G+ + KL+ L+T + + +
Sbjct: 11 NFLELAI-ECQALRFGSFKLKSGRESPYFFNL-GLFNTGKLLSNLATAYAIAIIQSDLKF 68
Query: 69 RTVCGVPYTALPIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTK 128
+ G Y +P+A V VK + G K Y RK+ K +G
Sbjct: 69 DVIFGPAYKGIPLAAIVCVK-----------LAEIGGSKFQNIQY--AFNRKEAKDHGEG 115
Query: 129 KLIEGVYEKGDKCVIIEDVVTSGSSI---LETINDLKS--VGIVVT----DVLTIVDREQ 179
+I G + + +II+DV+T+G++I E I++ K VG ++ +V++ D+E
Sbjct: 116 GIIVGSALENKRILIIDDVMTAGTAINEAFEIISNAKGQVVGSIIALDRQEVVSTDDKEG 175
Query: 180 GGRANLKQLGYTLHSLFTLSSVMDILYKANKIKVDTVEDVKKYL 223
Y + L +S + I Y +I + +++YL
Sbjct: 176 LSATQTVSKKYGIPVLSIVSLIHIITYLEGRITAEEKSKIEQYL 219
>pdb|3MJD|A Chain A, 1.9 Angstrom Crystal Structure Of Orotate
Phosphoribosyltransferase (Pyre) Francisella Tularensis.
pdb|3MJD|B Chain B, 1.9 Angstrom Crystal Structure Of Orotate
Phosphoribosyltransferase (Pyre) Francisella Tularensis.
pdb|3MJD|C Chain C, 1.9 Angstrom Crystal Structure Of Orotate
Phosphoribosyltransferase (Pyre) Francisella Tularensis.
pdb|3MJD|D Chain D, 1.9 Angstrom Crystal Structure Of Orotate
Phosphoribosyltransferase (Pyre) Francisella Tularensis
Length = 232
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 79/169 (46%), Gaps = 31/169 (18%)
Query: 21 LKFGDFVTKVGIKTPVYLDLRGIIS----YPKLMDYLST-IINDYLNINKISARTVCGVP 75
LKFG+F K G +P + + G+ + L DY + II + + + G+P
Sbjct: 36 LKFGEFTLKSGRISPYFFN-AGLFNTGAQLATLADYYAQLIIKSDVKYDILFGPAYKGIP 94
Query: 76 YTALPIATAVSVKYNI--PMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEG 133
A I+T +++KYNI P RK+ K +G GV+ D T K
Sbjct: 95 LVA-AISTVLALKYNIDMPYAFDRKEAKDHGEG----GVFVGADM--------TNK---- 137
Query: 134 VYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQGGR 182
K ++I+DV+T+G++ E+ N LK + + V+ +DR++ +
Sbjct: 138 ------KVLLIDDVMTAGTAFYESYNKLKIINAKIAGVVLSIDRQEKAK 180
>pdb|2P1Z|A Chain A, Crystal Structure Of Phosphoribosyltransferase From
Corynebacterium Diphtheriae
pdb|2P1Z|B Chain B, Crystal Structure Of Phosphoribosyltransferase From
Corynebacterium Diphtheriae
Length = 180
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 119 RKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDRE 178
RK+ K +G ++ IEG G K +++ED T+G+S L + L+ G V V T+VDR
Sbjct: 95 RKEAKKHGXQRRIEGPDVVGKKVLVVEDTTTTGNSPLTAVKALREAGAEVVGVATVVDRA 154
Query: 179 QG 180
G
Sbjct: 155 TG 156
>pdb|2DY0|A Chain A, Crystal Structure Of Project Jw0458 From Escherichia Coli
pdb|2DY0|B Chain B, Crystal Structure Of Project Jw0458 From Escherichia Coli
Length = 190
Score = 34.3 bits (77), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 45/75 (60%), Gaps = 5/75 (6%)
Query: 125 YGTKKL---IEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDR-EQG 180
YGT +L ++ + + GDK ++++D++ +G +I T+ ++ +G V D I++ + G
Sbjct: 111 YGTDQLEIHVDAI-KPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFDLG 169
Query: 181 GRANLKQLGYTLHSL 195
G L++ G T +SL
Sbjct: 170 GEQRLEKQGITSYSL 184
>pdb|1QB7|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani.
pdb|1QB8|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QCC|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QCD|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
Length = 236
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 60/142 (42%), Gaps = 6/142 (4%)
Query: 35 PVYLDLRGIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSVKYNIPML 94
P + D+ I P+ + + + + + G ++V+ IP +
Sbjct: 39 PRFADVSSITESPETLKAIRDFLVQRYRAMSPAPTHILGFDARGFLFGPMIAVELEIPFV 98
Query: 95 IRRKDVKTYGTKKLIEG-VYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSS 153
+ RK K G LI YEK K + + G KG + V+I+DV+ +G +
Sbjct: 99 LMRKADKNAGL--LIRSEPYEKEYKEAAPEVMTIRY---GSIGKGSRVVLIDDVLATGGT 153
Query: 154 ILETINDLKSVGIVVTDVLTIV 175
L + +++ VV ++++I+
Sbjct: 154 ALSGLQLVEASDAVVVEMVSIL 175
>pdb|1O57|A Chain A, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
pdb|1O57|B Chain B, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
pdb|1O57|C Chain C, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
pdb|1O57|D Chain D, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
Length = 291
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 7/109 (6%)
Query: 71 VCGVPYTALPIATAVSVKYNIPMLIRRKDVK-TYGTKKLIEGVYEKGDKRKDVKTYGTKK 129
V V +P+A A + N+P++I RKD K T G+ I V ++ + T
Sbjct: 134 VMTVATKGIPLAYAAASYLNVPVVIVRKDNKVTEGSTVSINYVSGSSNRIQ------TMS 187
Query: 130 LIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDRE 178
L + + G +II+D + +G +I IN L V + +V+ E
Sbjct: 188 LAKRSMKTGSNVLIIDDFMKAGGTINGMINLLDEFNANVAGIGVLVEAE 236
>pdb|1P4A|A Chain A, Crystal Structure Of The Purr Complexed With Cprpp
pdb|1P4A|B Chain B, Crystal Structure Of The Purr Complexed With Cprpp
pdb|1P4A|C Chain C, Crystal Structure Of The Purr Complexed With Cprpp
pdb|1P4A|D Chain D, Crystal Structure Of The Purr Complexed With Cprpp
Length = 285
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 7/109 (6%)
Query: 71 VCGVPYTALPIATAVSVKYNIPMLIRRKDVK-TYGTKKLIEGVYEKGDKRKDVKTYGTKK 129
V V +P+A A + N+P++I RKD K T G+ I V ++ + T
Sbjct: 134 VMTVATKGIPLAYAAASYLNVPVVIVRKDNKVTEGSTVSINYVSGSSNRIQ------TMS 187
Query: 130 LIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDRE 178
L + + G +II+D + +G +I IN L V + +V+ E
Sbjct: 188 LAKRSMKTGSNVLIIDDFMKAGGTINGMINLLDEFNANVAGIGVLVEAE 236
>pdb|2FOK|A Chain A, Structure Of Restriction Endonuclease Foki
pdb|2FOK|B Chain B, Structure Of Restriction Endonuclease Foki
Length = 579
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 27/41 (65%)
Query: 201 VMDILYKANKIKVDTVEDVKKYLCNNQVLPKCDNDVQGRIT 241
+++IL KA +K++ ++D K L ++V+ +ND++G I
Sbjct: 313 ILEILIKAGSLKIEQIQDNLKKLGFDEVIETIENDIKGLIN 353
>pdb|1FOK|A Chain A, Structure Of Restriction Endonuclease Foki Bound To Dna
Length = 576
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 27/41 (65%)
Query: 201 VMDILYKANKIKVDTVEDVKKYLCNNQVLPKCDNDVQGRIT 241
+++IL KA +K++ ++D K L ++V+ +ND++G I
Sbjct: 310 ILEILIKAGSLKIEQIQDNLKKLGFDEVIETIENDIKGLIN 350
>pdb|1QK5|A Chain A, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase With Xmp, Pyrophosphate And
Two Mg2+ Ions
pdb|1QK5|B Chain B, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase With Xmp, Pyrophosphate And
Two Mg2+ Ions
Length = 233
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 142 VIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQGGRANLKQ--LGYTLHSLFTLS 199
+I+ED+V +G ++ E LK+VG + T+V++ +LK +G+++ ++ +
Sbjct: 146 LIVEDIVATGFTLTEFGERLKAVGPKSMRIATLVEKRTDRSNSLKGDFVGFSIEDVWIVG 205
Query: 200 SVMDI 204
D
Sbjct: 206 CCYDF 210
>pdb|1DBR|A Chain A, Hypoxanthine Guanine Xanthine
pdb|1DBR|B Chain B, Hypoxanthine Guanine Xanthine
pdb|1DBR|C Chain C, Hypoxanthine Guanine Xanthine
pdb|1DBR|D Chain D, Hypoxanthine Guanine Xanthine
Length = 231
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 142 VIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQGGRANLKQ--LGYTLHSLFTLS 199
+I+ED+V +G ++ E LK+VG + T+V++ +LK +G+++ ++ +
Sbjct: 143 LIVEDIVDTGFTLTEFGERLKAVGPKSMRIATLVEKRTDRSNSLKGDFVGFSIEDVWIVG 202
Query: 200 SVMDI 204
D
Sbjct: 203 CCYDF 207
>pdb|1QK3|A Chain A, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase Gmp Complex
pdb|1QK3|B Chain B, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase Gmp Complex
pdb|1QK3|C Chain C, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase Gmp Complex
pdb|1QK3|D Chain D, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase Gmp Complex
pdb|1QK4|A Chain A, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase Imp Complex
pdb|1QK4|B Chain B, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase Imp Complex
pdb|1QK4|C Chain C, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase Imp Complex
pdb|1QK4|D Chain D, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase Imp Complex
pdb|1FSG|A Chain A, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase Complexed With 9-Deazaguanine,
Alpha-D-5-Phosphoribosyl-1- Pyrophosphate (Prpp) And Two
Mg2+ Ions
pdb|1FSG|C Chain C, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase Complexed With 9-Deazaguanine,
Alpha-D-5-Phosphoribosyl-1- Pyrophosphate (Prpp) And Two
Mg2+ Ions
Length = 233
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 142 VIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQGGRANLKQ--LGYTLHSLFTLS 199
+I+ED+V +G ++ E LK+VG + T+V++ +LK +G+++ ++ +
Sbjct: 146 LIVEDIVDTGFTLTEFGERLKAVGPKSMRIATLVEKRTDRSNSLKGDFVGFSIEDVWIVG 205
Query: 200 SVMDI 204
D
Sbjct: 206 CCYDF 210
>pdb|1HGX|A Chain A, Hypoxanthine-Guanine-Xanthine Phosphoribosyltransferase
(Hgxprtase)
pdb|1HGX|B Chain B, Hypoxanthine-Guanine-Xanthine Phosphoribosyltransferase
(Hgxprtase)
Length = 183
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/47 (23%), Positives = 28/47 (59%)
Query: 137 KGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQGGRA 183
+G +++ED++ +G ++ + +N+L+ V T+ D++ G +A
Sbjct: 94 EGRHVLVVEDIIDTGLTMYQLLNNLQMRKPASLKVCTLCDKDIGKKA 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,209,613
Number of Sequences: 62578
Number of extensions: 291743
Number of successful extensions: 847
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 806
Number of HSP's gapped (non-prelim): 35
length of query: 250
length of database: 14,973,337
effective HSP length: 96
effective length of query: 154
effective length of database: 8,965,849
effective search space: 1380740746
effective search space used: 1380740746
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)