Query psy1963
Match_columns 250
No_of_seqs 196 out of 2040
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 20:44:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1963.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1963hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13809 orotate phosphoribosy 100.0 2.6E-43 5.7E-48 296.4 25.2 193 8-224 10-204 (206)
2 COG0461 PyrE Orotate phosphori 100.0 1.3E-42 2.8E-47 288.3 23.6 196 7-225 2-199 (201)
3 PRK13810 orotate phosphoribosy 100.0 3.5E-42 7.6E-47 285.7 21.9 174 5-202 13-186 (187)
4 PRK05500 bifunctional orotidin 100.0 3.5E-41 7.6E-46 313.1 23.3 193 5-221 284-476 (477)
5 PRK00455 pyrE orotate phosphor 100.0 2.5E-39 5.4E-44 272.7 25.5 200 5-227 2-201 (202)
6 PRK13812 orotate phosphoribosy 100.0 1.1E-39 2.4E-44 268.6 21.8 171 9-205 4-174 (176)
7 PRK13811 orotate phosphoribosy 100.0 1.7E-37 3.7E-42 254.6 20.9 168 8-203 2-169 (170)
8 TIGR00336 pyrE orotate phospho 100.0 4.3E-36 9.4E-41 247.1 18.6 165 14-201 2-173 (173)
9 TIGR01367 pyrE_Therm orotate p 100.0 9.7E-33 2.1E-37 229.6 18.2 160 11-198 2-162 (187)
10 TIGR01744 XPRTase xanthine pho 100.0 8.8E-29 1.9E-33 206.2 16.5 178 9-202 2-182 (191)
11 PRK09219 xanthine phosphoribos 100.0 8E-28 1.7E-32 200.0 17.9 179 9-202 2-182 (189)
12 TIGR01743 purR_Bsub pur operon 99.9 2.9E-26 6.2E-31 199.1 18.6 176 5-202 79-254 (268)
13 PRK09213 pur operon repressor; 99.9 5.6E-26 1.2E-30 197.7 19.3 176 5-202 81-256 (271)
14 PRK12560 adenine phosphoribosy 99.9 2.4E-26 5.2E-31 191.2 15.7 163 27-201 12-179 (187)
15 PRK02277 orotate phosphoribosy 99.9 1.9E-25 4.1E-30 187.8 17.5 152 29-201 47-199 (200)
16 PRK08558 adenine phosphoribosy 99.9 6.7E-25 1.5E-29 188.8 18.5 155 36-198 82-237 (238)
17 PLN02293 adenine phosphoribosy 99.9 1.5E-24 3.4E-29 180.1 17.9 161 21-199 22-185 (187)
18 KOG1712|consensus 99.9 2.1E-25 4.4E-30 175.9 11.9 168 16-199 11-182 (183)
19 PRK02304 adenine phosphoribosy 99.9 1.2E-24 2.6E-29 179.4 16.9 151 35-199 21-174 (175)
20 TIGR01090 apt adenine phosphor 99.9 2.2E-23 4.7E-28 171.0 16.5 157 24-197 9-168 (169)
21 COG0503 Apt Adenine/guanine ph 99.9 3.3E-23 7.1E-28 171.2 16.8 172 6-198 3-177 (179)
22 PRK06031 phosphoribosyltransfe 99.9 1E-20 2.2E-25 162.1 15.4 159 36-201 52-221 (233)
23 COG0856 Orotate phosphoribosyl 99.9 3E-21 6.4E-26 154.4 11.0 143 34-199 52-198 (203)
24 PRK07322 adenine phosphoribosy 99.8 8.6E-20 1.9E-24 150.8 15.4 137 35-180 23-162 (178)
25 PF00156 Pribosyltran: Phospho 99.8 3.8E-19 8.2E-24 137.9 11.6 123 42-175 2-125 (125)
26 COG1926 Predicted phosphoribos 99.7 3.4E-16 7.3E-21 129.5 15.7 175 51-229 8-214 (220)
27 PLN02238 hypoxanthine phosphor 99.6 1.9E-14 4.1E-19 120.0 14.7 118 44-179 12-138 (189)
28 PRK00934 ribose-phosphate pyro 99.6 3.4E-14 7.4E-19 125.7 15.9 154 8-191 104-258 (285)
29 PRK07199 phosphoribosylpyropho 99.6 3.6E-14 7.8E-19 126.3 15.9 155 8-191 107-265 (301)
30 PRK02269 ribose-phosphate pyro 99.6 2.8E-14 6.1E-19 128.0 15.3 158 8-191 111-271 (320)
31 TIGR01251 ribP_PPkin ribose-ph 99.6 5E-14 1.1E-18 126.0 15.9 158 7-191 106-264 (308)
32 COG0462 PrsA Phosphoribosylpyr 99.6 5.6E-14 1.2E-18 123.8 14.3 153 7-187 109-264 (314)
33 PRK09162 hypoxanthine-guanine 99.6 5.2E-14 1.1E-18 116.6 13.0 113 50-178 22-137 (181)
34 PRK01259 ribose-phosphate pyro 99.6 7.1E-14 1.5E-18 124.9 14.7 156 8-191 106-262 (309)
35 TIGR01203 HGPRTase hypoxanthin 99.5 1.7E-13 3.8E-18 112.0 14.4 116 49-179 7-125 (166)
36 PLN02369 ribose-phosphate pyro 99.5 2.1E-13 4.5E-18 121.5 16.0 157 7-191 96-256 (302)
37 PRK07272 amidophosphoribosyltr 99.5 5E-14 1.1E-18 132.3 12.0 148 48-206 269-438 (484)
38 PRK04923 ribose-phosphate pyro 99.5 1.5E-13 3.2E-18 123.2 13.8 156 7-191 112-271 (319)
39 TIGR01134 purF amidophosphorib 99.5 6.7E-14 1.5E-18 130.7 12.1 148 48-206 257-426 (442)
40 PRK03092 ribose-phosphate pyro 99.5 5E-13 1.1E-17 119.2 15.4 163 7-194 94-258 (304)
41 PRK00553 ribose-phosphate pyro 99.5 6.5E-13 1.4E-17 119.6 16.0 152 7-186 114-267 (332)
42 PRK02458 ribose-phosphate pyro 99.5 5.2E-13 1.1E-17 119.9 15.3 154 7-191 114-272 (323)
43 KOG1377|consensus 99.5 1.3E-14 2.8E-19 122.6 4.3 196 5-227 33-252 (261)
44 PRK09177 xanthine-guanine phos 99.5 2.8E-13 6.1E-18 109.6 11.9 107 47-178 12-119 (156)
45 PRK15423 hypoxanthine phosphor 99.5 4.5E-13 9.7E-18 110.6 13.2 117 46-179 10-133 (178)
46 PRK06827 phosphoribosylpyropho 99.5 6E-13 1.3E-17 121.5 15.3 163 8-186 148-312 (382)
47 PRK02812 ribose-phosphate pyro 99.5 1.2E-12 2.7E-17 117.7 16.5 163 7-198 126-292 (330)
48 PRK07349 amidophosphoribosyltr 99.5 3E-13 6.4E-18 127.5 13.0 147 48-205 296-464 (500)
49 PRK08525 amidophosphoribosyltr 99.5 1.2E-12 2.6E-17 122.4 16.2 118 48-177 259-379 (445)
50 TIGR00201 comF comF family pro 99.5 3.3E-13 7.1E-18 112.6 11.1 122 43-175 54-189 (190)
51 PRK05205 bifunctional pyrimidi 99.5 1.1E-12 2.4E-17 108.2 12.9 121 45-178 7-136 (176)
52 PRK09123 amidophosphoribosyltr 99.4 1.3E-12 2.8E-17 122.9 13.6 114 48-173 279-395 (479)
53 PRK09246 amidophosphoribosyltr 99.4 7.5E-13 1.6E-17 125.4 11.9 149 50-206 274-446 (501)
54 PRK06781 amidophosphoribosyltr 99.4 5.9E-13 1.3E-17 124.9 10.9 116 48-174 267-384 (471)
55 PRK05793 amidophosphoribosyltr 99.4 2.3E-12 5E-17 121.2 14.9 118 49-177 273-392 (469)
56 PLN02440 amidophosphoribosyltr 99.4 1.5E-12 3.3E-17 122.6 13.5 148 48-206 259-428 (479)
57 PTZ00271 hypoxanthine-guanine 99.4 3.2E-12 7E-17 108.0 13.9 119 45-178 28-158 (211)
58 COG1040 ComFC Predicted amidop 99.4 3E-13 6.6E-18 115.6 7.2 117 43-176 87-222 (225)
59 PRK08341 amidophosphoribosyltr 99.4 3.1E-12 6.8E-17 119.2 13.1 114 48-174 255-370 (442)
60 PTZ00145 phosphoribosylpyropho 99.4 1.2E-11 2.6E-16 114.1 15.8 156 7-191 224-389 (439)
61 COG2236 Predicted phosphoribos 99.4 1.6E-12 3.4E-17 107.9 9.0 110 49-174 11-123 (192)
62 COG0634 Hpt Hypoxanthine-guani 99.4 1.4E-11 3E-16 99.8 14.0 123 43-180 10-135 (178)
63 PRK07631 amidophosphoribosyltr 99.4 2.2E-12 4.7E-17 121.1 10.7 147 48-205 267-435 (475)
64 PRK07847 amidophosphoribosyltr 99.4 7.1E-12 1.5E-16 118.5 13.4 150 48-206 286-455 (510)
65 PRK06388 amidophosphoribosyltr 99.4 8.2E-12 1.8E-16 117.3 13.1 146 48-205 275-443 (474)
66 PRK11595 DNA utilization prote 99.4 6.5E-12 1.4E-16 107.7 11.4 121 43-175 83-224 (227)
67 PTZ00149 hypoxanthine phosphor 99.3 2.7E-11 5.9E-16 104.1 12.3 120 42-179 55-191 (241)
68 PLN02297 ribose-phosphate pyro 99.3 1.3E-10 2.8E-15 104.2 15.5 151 8-187 123-280 (326)
69 COG0034 PurF Glutamine phospho 99.3 2.8E-11 6.2E-16 110.7 11.1 150 48-208 267-438 (470)
70 COG2065 PyrR Pyrimidine operon 99.1 1.4E-09 3.1E-14 86.8 12.6 117 46-179 8-138 (179)
71 PF14572 Pribosyl_synth: Phosp 99.0 4.6E-09 9.9E-14 86.4 11.2 120 69-191 5-137 (184)
72 KOG1448|consensus 98.9 1.8E-08 3.8E-13 87.8 12.1 166 5-197 106-275 (316)
73 PRK00129 upp uracil phosphorib 98.9 2.1E-08 4.6E-13 84.9 12.4 100 69-187 72-172 (209)
74 KOG0572|consensus 98.9 1E-08 2.2E-13 91.9 10.3 148 49-207 276-445 (474)
75 KOG3367|consensus 98.8 3.9E-08 8.4E-13 79.2 10.7 127 36-178 28-165 (216)
76 TIGR01091 upp uracil phosphori 98.8 6.4E-08 1.4E-12 81.9 11.1 99 69-186 70-169 (207)
77 PF15609 PRTase_2: Phosphoribo 98.8 2.8E-07 6E-12 76.1 14.0 148 43-194 29-183 (191)
78 PLN02541 uracil phosphoribosyl 97.9 0.00021 4.5E-09 61.9 11.2 50 136-186 155-206 (244)
79 PF14681 UPRTase: Uracil phosp 97.4 0.0054 1.2E-07 51.8 13.5 105 69-194 69-180 (207)
80 COG0035 Upp Uracil phosphoribo 97.3 0.0025 5.4E-08 53.6 9.9 103 70-194 73-182 (210)
81 KOG1503|consensus 96.8 0.046 9.9E-07 46.9 12.8 173 9-190 114-300 (354)
82 PF15610 PRTase_3: PRTase ComF 95.5 0.17 3.7E-06 44.2 10.4 126 43-177 28-178 (274)
83 KOG1017|consensus 89.8 1.3 2.9E-05 37.1 6.7 59 137-197 188-248 (267)
84 PF13793 Pribosyltran_N: N-ter 82.2 20 0.00043 27.3 9.8 75 77-173 8-86 (116)
85 PRK02812 ribose-phosphate pyro 75.6 41 0.00088 30.5 10.7 82 70-174 23-108 (330)
86 PF01488 Shikimate_DH: Shikima 73.8 16 0.00034 28.3 6.7 66 136-208 10-76 (135)
87 PRK07199 phosphoribosylpyropho 73.7 48 0.001 29.6 10.6 76 76-173 9-87 (301)
88 TIGR00678 holB DNA polymerase 73.3 33 0.00072 27.8 8.9 84 136-223 94-181 (188)
89 PTZ00145 phosphoribosylpyropho 73.2 44 0.00096 31.6 10.5 83 70-174 120-206 (439)
90 PLN02369 ribose-phosphate pyro 68.9 45 0.00097 29.8 9.3 73 80-174 2-78 (302)
91 PRK00553 ribose-phosphate pyro 67.7 81 0.0017 28.6 10.8 77 76-174 16-96 (332)
92 PRK01259 ribose-phosphate pyro 67.6 54 0.0012 29.4 9.6 76 76-173 7-86 (309)
93 PRK00934 ribose-phosphate pyro 67.5 63 0.0014 28.5 9.9 75 77-173 7-84 (285)
94 PRK02269 ribose-phosphate pyro 67.0 81 0.0017 28.4 10.6 77 76-174 12-92 (320)
95 TIGR01251 ribP_PPkin ribose-ph 66.4 41 0.00088 30.1 8.5 76 76-173 7-87 (308)
96 PRK04923 ribose-phosphate pyro 66.3 57 0.0012 29.5 9.4 80 71-173 9-92 (319)
97 PRK02458 ribose-phosphate pyro 65.6 99 0.0022 27.9 10.9 77 76-174 16-96 (323)
98 PLN02331 phosphoribosylglycina 61.8 50 0.0011 27.9 7.8 49 149-197 8-57 (207)
99 PRK03092 ribose-phosphate pyro 60.2 68 0.0015 28.7 8.8 72 81-174 1-76 (304)
100 PRK11778 putative inner membra 58.7 12 0.00025 34.1 3.6 86 137-224 153-241 (330)
101 PF11202 PRTase_1: Phosphoribo 55.3 23 0.00049 30.8 4.6 146 11-179 28-190 (257)
102 COG0120 RpiA Ribose 5-phosphat 54.2 14 0.0003 31.7 3.1 88 147-236 25-124 (227)
103 COG0462 PrsA Phosphoribosylpyr 54.0 83 0.0018 28.4 8.1 77 76-174 11-91 (314)
104 PF11382 DUF3186: Protein of u 52.3 38 0.00082 30.4 5.8 97 130-227 76-189 (308)
105 KOG0741|consensus 51.1 2.4E+02 0.0053 27.8 11.0 161 54-229 523-706 (744)
106 COG0616 SppA Periplasmic serin 50.6 18 0.00038 32.6 3.4 80 139-220 130-211 (317)
107 PHA02588 cd deoxycytidylate de 48.9 46 0.001 27.1 5.3 55 147-202 104-159 (168)
108 PRK05647 purN phosphoribosylgl 48.7 84 0.0018 26.2 7.0 45 151-195 12-57 (200)
109 cd04908 ACT_Bt0572_1 N-termina 48.3 77 0.0017 20.8 5.8 28 147-174 8-35 (66)
110 PTZ00441 sporozoite surface pr 47.9 59 0.0013 31.8 6.6 67 139-205 151-223 (576)
111 PF00676 E1_dh: Dehydrogenase 47.0 2.1E+02 0.0045 25.4 9.9 152 50-222 108-279 (300)
112 PRK13978 ribose-5-phosphate is 46.6 21 0.00045 30.7 3.1 88 147-236 26-126 (228)
113 PRK04195 replication factor C 46.2 1.9E+02 0.0042 27.4 9.9 55 42-96 15-70 (482)
114 COG0299 PurN Folate-dependent 45.8 55 0.0012 27.5 5.3 49 149-197 9-58 (200)
115 COG2984 ABC-type uncharacteriz 43.7 2.5E+02 0.0055 25.4 11.7 45 45-98 72-117 (322)
116 PF12646 DUF3783: Domain of un 42.4 55 0.0012 21.5 4.0 40 140-181 2-41 (58)
117 PRK09019 translation initiatio 41.0 1.1E+02 0.0023 23.2 5.8 58 136-193 42-104 (108)
118 cd00158 RHOD Rhodanese Homolog 40.4 68 0.0015 21.7 4.6 31 136-169 48-78 (89)
119 PLN02384 ribose-5-phosphate is 39.7 32 0.00069 30.3 3.2 54 147-200 54-108 (264)
120 PF07931 CPT: Chloramphenicol 38.9 42 0.00092 27.5 3.7 39 137-178 82-121 (174)
121 PF02570 CbiC: Precorrin-8X me 38.6 82 0.0018 26.5 5.3 42 58-99 136-179 (198)
122 TIGR02990 ectoine_eutA ectoine 38.0 44 0.00095 28.8 3.8 47 152-198 106-154 (239)
123 PF00571 CBS: CBS domain CBS d 37.5 58 0.0013 20.3 3.6 44 149-206 13-56 (57)
124 PRK06824 translation initiatio 37.4 1.2E+02 0.0026 23.3 5.7 58 136-193 52-114 (118)
125 PF11116 DUF2624: Protein of u 37.1 72 0.0016 23.0 4.1 33 196-228 15-48 (85)
126 PF02875 Mur_ligase_C: Mur lig 36.4 37 0.00079 24.0 2.6 26 139-164 12-37 (91)
127 PF14468 DUF4427: Protein of u 35.9 55 0.0012 25.3 3.5 48 9-63 47-96 (132)
128 PF09851 SHOCT: Short C-termin 35.8 86 0.0019 17.8 3.7 23 201-223 7-29 (31)
129 smart00450 RHOD Rhodanese Homo 35.4 81 0.0017 21.6 4.4 30 136-168 54-83 (100)
130 TIGR00639 PurN phosphoribosylg 35.2 1.1E+02 0.0024 25.2 5.7 46 150-195 10-56 (190)
131 COG0108 RibB 3,4-dihydroxy-2-b 34.6 1.4E+02 0.0031 25.1 6.1 126 70-207 54-200 (203)
132 cd08809 CARD_CARD9 Caspase act 34.4 31 0.00066 24.9 1.8 39 184-222 4-42 (86)
133 cd01714 ETF_beta The electron 34.3 80 0.0017 26.3 4.7 42 52-95 95-140 (202)
134 COG4565 CitB Response regulato 34.1 1.6E+02 0.0034 25.3 6.3 12 210-221 129-140 (224)
135 cd01715 ETF_alpha The electron 33.4 99 0.0022 24.6 5.0 42 52-95 70-112 (168)
136 COG1797 CobB Cobyrinic acid a, 33.2 1.3E+02 0.0029 28.4 6.3 63 138-200 111-180 (451)
137 cd01529 4RHOD_Repeats Member o 33.2 80 0.0017 22.3 4.1 30 136-168 54-83 (96)
138 COG1433 Uncharacterized conser 32.8 1.1E+02 0.0024 23.6 4.8 67 138-207 33-106 (121)
139 cd01444 GlpE_ST GlpE sulfurtra 32.4 84 0.0018 21.9 4.0 31 136-169 54-84 (96)
140 PF08901 DUF1847: Protein of u 32.0 59 0.0013 26.2 3.3 46 152-197 41-89 (157)
141 COG4338 Uncharacterized protei 31.7 15 0.00033 23.5 -0.0 10 239-248 14-23 (54)
142 COG3535 Uncharacterized conser 31.3 4.1E+02 0.009 24.3 10.3 112 46-172 77-190 (357)
143 TIGR02698 CopY_TcrY copper tra 31.1 1.3E+02 0.0027 23.3 5.0 29 198-226 89-117 (130)
144 PF10925 DUF2680: Protein of u 31.0 1.1E+02 0.0023 20.4 4.0 28 199-226 21-48 (59)
145 PRK07451 translation initiatio 30.6 1.6E+02 0.0035 22.5 5.4 57 137-193 50-111 (115)
146 PRK06827 phosphoribosylpyropho 30.5 4.5E+02 0.0097 24.4 10.7 38 136-174 75-130 (382)
147 cd01523 RHOD_Lact_B Member of 30.4 1.1E+02 0.0024 21.7 4.4 29 136-167 59-87 (100)
148 COG0784 CheY FOG: CheY-like re 30.3 1.2E+02 0.0026 22.0 4.8 26 137-165 4-29 (130)
149 PF01012 ETF: Electron transfe 30.2 74 0.0016 25.1 3.8 61 30-95 57-119 (164)
150 TIGR02619 putative CRISPR-asso 30.1 2.6E+02 0.0057 22.2 6.8 51 49-99 84-139 (149)
151 PTZ00428 60S ribosomal protein 29.9 1.4E+02 0.0031 27.6 5.9 25 142-166 151-175 (381)
152 PRK04940 hypothetical protein; 29.8 1.7E+02 0.0036 24.2 5.8 32 67-99 60-91 (180)
153 COG0371 GldA Glycerol dehydrog 29.6 1.6E+02 0.0036 27.1 6.2 34 67-100 84-118 (360)
154 COG2082 CobH Precorrin isomera 29.5 2.1E+02 0.0046 24.3 6.4 42 58-99 145-188 (210)
155 CHL00147 rpl4 ribosomal protei 29.4 1.7E+02 0.0037 24.8 5.9 83 139-224 124-214 (215)
156 cd06578 HemD Uroporphyrinogen- 29.1 1.2E+02 0.0025 25.0 5.0 61 148-208 55-118 (239)
157 TIGR00021 rpiA ribose 5-phosph 29.0 79 0.0017 26.9 3.8 51 147-198 20-71 (218)
158 cd08330 CARD_ASC_NALP1 Caspase 28.9 77 0.0017 22.4 3.2 25 197-221 16-40 (82)
159 KOG3549|consensus 28.7 43 0.00094 30.7 2.3 43 131-173 95-137 (505)
160 KOG0081|consensus 28.6 1.9E+02 0.0041 23.7 5.7 32 65-96 122-161 (219)
161 cd01965 Nitrogenase_MoFe_beta_ 28.5 2.4E+02 0.0053 26.2 7.4 69 135-208 296-370 (428)
162 PF02776 TPP_enzyme_N: Thiamin 27.8 95 0.002 24.8 4.0 45 53-99 3-48 (172)
163 PF05728 UPF0227: Uncharacteri 27.7 1.3E+02 0.0028 24.8 4.9 49 45-97 40-88 (187)
164 COG4252 Predicted transmembran 27.6 94 0.002 29.1 4.3 50 136-185 57-117 (400)
165 PF04659 Arch_fla_DE: Archaeal 27.5 1.1E+02 0.0024 22.7 3.9 34 194-227 33-66 (99)
166 PRK00939 translation initiatio 27.1 1.8E+02 0.004 21.5 5.1 57 136-192 34-95 (99)
167 cd07039 TPP_PYR_POX Pyrimidine 26.5 1.7E+02 0.0037 23.4 5.3 45 53-99 2-47 (164)
168 PRK05319 rplD 50S ribosomal pr 26.5 1.5E+02 0.0033 24.9 5.1 82 138-223 119-204 (205)
169 cd01985 ETF The electron trans 26.4 1.3E+02 0.0027 24.2 4.6 42 52-95 78-120 (181)
170 PF00595 PDZ: PDZ domain (Also 26.2 1.3E+02 0.0029 20.4 4.1 33 135-167 43-75 (81)
171 cd01979 Pchlide_reductase_N Pc 26.0 2.8E+02 0.0061 25.5 7.3 68 136-208 274-344 (396)
172 PF09651 Cas_APE2256: CRISPR-a 25.9 1.1E+02 0.0024 23.8 3.9 50 50-99 73-126 (136)
173 PRK05476 S-adenosyl-L-homocyst 25.9 2.3E+02 0.0049 26.8 6.6 58 136-196 46-104 (425)
174 PF03681 UPF0150: Uncharacteri 25.7 25 0.00055 21.9 0.2 19 146-164 23-41 (48)
175 cd01477 vWA_F09G8-8_type VWA F 24.8 1.4E+02 0.003 24.7 4.6 29 145-173 140-169 (193)
176 TIGR01158 SUI1_rel translation 24.5 2.5E+02 0.0053 20.8 5.4 58 136-193 35-97 (101)
177 cd00851 MTH1175 This uncharact 24.4 2.6E+02 0.0056 19.7 5.6 40 155-197 53-92 (103)
178 PRK10773 murF UDP-N-acetylmura 24.2 82 0.0018 29.6 3.4 36 140-177 326-362 (453)
179 PF04189 Gcd10p: Gcd10p family 24.1 2E+02 0.0044 25.7 5.7 54 135-193 199-252 (299)
180 TIGR00655 PurU formyltetrahydr 24.1 3.3E+02 0.0073 24.0 7.1 56 139-197 85-140 (280)
181 KOG2978|consensus 24.1 4.5E+02 0.0097 22.3 9.0 92 53-165 21-117 (238)
182 cd08323 CARD_APAF1 Caspase act 24.0 1.1E+02 0.0024 22.0 3.3 24 198-221 16-39 (86)
183 TIGR01809 Shik-DH-AROM shikima 23.9 2.3E+02 0.005 24.8 6.0 37 136-179 123-159 (282)
184 PRK08286 cbiC cobalt-precorrin 23.8 2.4E+02 0.0051 24.0 5.7 41 59-99 150-192 (214)
185 PLN02423 phosphomannomutase 23.6 1.7E+02 0.0037 25.0 5.1 58 146-207 182-242 (245)
186 cd07018 S49_SppA_67K_type Sign 23.5 1.7E+02 0.0036 24.6 4.9 87 137-225 77-167 (222)
187 cd00532 MGS-like MGS-like doma 23.3 2.1E+02 0.0046 21.1 5.0 38 154-198 14-51 (112)
188 PRK00702 ribose-5-phosphate is 23.3 1.1E+02 0.0024 26.1 3.7 51 147-198 25-75 (220)
189 PRK01077 cobyrinic acid a,c-di 23.0 1.8E+02 0.0039 27.4 5.5 62 138-201 114-183 (451)
190 PF05221 AdoHcyase: S-adenosyl 22.8 53 0.0011 28.9 1.7 59 136-197 41-100 (268)
191 cd01398 RPI_A RPI_A: Ribose 5- 22.5 1.3E+02 0.0028 25.4 3.9 48 148-196 21-69 (213)
192 PF00862 Sucrose_synth: Sucros 22.3 97 0.0021 30.0 3.4 52 46-97 380-431 (550)
193 PRK05575 cbiC precorrin-8X met 22.2 2.7E+02 0.0058 23.5 5.8 51 45-99 134-186 (204)
194 PF06032 DUF917: Protein of un 22.0 1.6E+02 0.0035 27.0 4.8 32 65-96 89-122 (353)
195 TIGR01279 DPOR_bchN light-inde 21.9 3.7E+02 0.008 24.9 7.2 68 136-207 272-341 (407)
196 PF02579 Nitro_FeMo-Co: Dinitr 21.8 1.6E+02 0.0035 20.5 3.9 53 150-205 38-92 (94)
197 cd01474 vWA_ATR ATR (Anthrax T 21.6 4.2E+02 0.0091 21.1 6.9 35 139-173 105-142 (185)
198 cd01518 RHOD_YceA Member of th 21.6 1.9E+02 0.0042 20.4 4.4 30 136-168 59-88 (101)
199 PF01976 DUF116: Protein of un 21.5 1E+02 0.0022 24.8 3.0 53 137-197 85-138 (158)
200 PRK05953 precorrin-8X methylmu 21.4 2.8E+02 0.006 23.5 5.6 41 59-99 137-179 (208)
201 PRK03359 putative electron tra 21.3 1.5E+02 0.0033 25.8 4.3 41 52-94 99-143 (256)
202 PLN02297 ribose-phosphate pyro 21.3 6.2E+02 0.013 22.9 10.0 82 70-174 18-104 (326)
203 PRK00005 fmt methionyl-tRNA fo 21.3 2.1E+02 0.0046 25.4 5.4 60 148-207 6-76 (309)
204 TIGR00706 SppA_dom signal pept 21.3 1.3E+02 0.0027 25.1 3.7 81 140-224 64-148 (207)
205 TIGR00460 fmt methionyl-tRNA f 21.2 2.8E+02 0.006 24.8 6.1 60 148-207 6-76 (313)
206 COG1751 Uncharacterized conser 21.1 2.1E+02 0.0045 23.2 4.6 80 139-224 29-118 (186)
207 PRK05954 precorrin-8X methylmu 20.9 3E+02 0.0064 23.3 5.7 41 59-99 139-181 (203)
208 cd03174 DRE_TIM_metallolyase D 20.6 5.2E+02 0.011 21.7 8.4 66 152-226 115-187 (265)
209 PRK12342 hypothetical protein; 20.3 1.8E+02 0.0039 25.4 4.5 40 53-94 97-140 (254)
210 PLN02494 adenosylhomocysteinas 20.2 1.4E+02 0.0031 28.6 4.1 59 136-197 44-103 (477)
211 KOG1615|consensus 20.2 1.2E+02 0.0026 25.7 3.2 35 55-93 94-129 (227)
212 KOG0743|consensus 20.1 3.8E+02 0.0083 25.5 6.8 54 41-94 201-264 (457)
213 PRK09880 L-idonate 5-dehydroge 20.0 5.7E+02 0.012 22.5 7.9 49 136-191 168-216 (343)
214 PF10013 DUF2256: Uncharacteri 20.0 43 0.00094 20.8 0.4 10 239-248 10-19 (42)
215 TIGR02822 adh_fam_2 zinc-bindi 20.0 3.7E+02 0.008 23.7 6.7 49 135-191 163-211 (329)
216 PRK08285 cobH precorrin-8X met 20.0 3.2E+02 0.0068 23.2 5.7 41 59-99 145-189 (208)
No 1
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=2.6e-43 Score=296.39 Aligned_cols=193 Identities=36% Similarity=0.658 Sum_probs=181.0
Q ss_pred HHHHHHHHHHCCceeeCCccccCccccCeEeecccccCCHHHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHHHHH
Q psy1963 8 LNHLCLQLFDIDALKFGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSV 87 (250)
Q Consensus 8 ~~~~~~~l~~~~~~~~g~f~l~sG~~s~~y~d~~~~~~~p~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~lA~ 87 (250)
.+++++.|++.||++||+|+|+||++||+|+|++.++++|+.++.+++.|++.+... ++|+|+|++++|+|+|..+|.
T Consensus 10 ~~~l~~~l~~~gal~~g~F~L~SG~~S~~y~D~~~i~~~p~~l~~i~~~l~~~~~~~--~~d~IvG~~~~Gi~~A~~vA~ 87 (206)
T PRK13809 10 RDQAVAILYQIGAIKFGKFILASGEETPIYVDMRLVISSPEVLQTIATLIWRLRPSF--NSSLLCGVPYTALTLATSISL 87 (206)
T ss_pred HHHHHHHHHHcCCEEECCEEECCcCCCCEEEEChhhccCHHHHHHHHHHHHHHhccC--CCCEEEEecCccHHHHHHHHH
Confidence 467999999999999999999999999999999999999999999999999988643 589999999999999999999
Q ss_pred HcCCCEEEEeeccCCcCccccccceeecCCcccccccccccceE--eccccCCCEEEEEeccccccHHHHHHHHHHHhCC
Q psy1963 88 KYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLI--EGVYEKGDKCVIIEDVVTSGSSILETINDLKSVG 165 (250)
Q Consensus 88 ~l~ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i--~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~G 165 (250)
.+|+|++++||+.|.||.. ..+ +|.+.+|++|+|||||+|||+|+.++++.|+++|
T Consensus 88 ~l~~p~~~~RK~~K~~G~~----------------------~~~~~~g~~~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G 145 (206)
T PRK13809 88 KYNIPMVLRRKELKNVDPS----------------------DAIKVEGLFTPGQTCLVINDMVSSGKSIIETAVALEEEG 145 (206)
T ss_pred HhCCCEEEEeCCCCCCCCc----------------------CEEEEccccCCCCEEEEEEeccccCHHHHHHHHHHHHCC
Confidence 9999999999998988865 222 5656799999999999999999999999999999
Q ss_pred CeEEEEEEEEeCCccHHHHHHhcCCcEEEeecHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q psy1963 166 IVVTDVLTIVDREQGGRANLKQLGYTLHSLFTLSSVMDILYKANKIKVDTVEDVKKYLC 224 (250)
Q Consensus 166 a~vv~~~vlvd~~~~~~~~l~~~g~~v~sl~~~~~l~~~~~~~~~i~~~~~~~v~~~l~ 224 (250)
+++++++|++|+++++.+.+++.|++++||+++.++++++++.|.+++++.+.+.+|++
T Consensus 146 ~~vv~v~vlvdr~~~~~~~l~~~gi~v~sl~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 204 (206)
T PRK13809 146 LVVREALVFLDRQKGACQPLGPQGIKLSSVFTVPDLIKSLISYGKLSSGDLTLANKIIK 204 (206)
T ss_pred CEEEEEEEEEECcccHHHHHHhcCCCEEEEEEHHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 99999999999998899999889999999999999999999999999999999999986
No 2
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.3e-42 Score=288.29 Aligned_cols=196 Identities=35% Similarity=0.567 Sum_probs=181.7
Q ss_pred HHHHHHHHHHHCCceeeCCccccCccccCeEeecccccCCHHHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHHHH
Q psy1963 7 KLNHLCLQLFDIDALKFGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVS 86 (250)
Q Consensus 7 ~~~~~~~~l~~~~~~~~g~f~l~sG~~s~~y~d~~~~~~~p~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~lA 86 (250)
+++++++.|++.++++||+|+|+||++||||+|.+.+..+|++++.++..++..+.+. .++|+|+|++++|+|+|+++|
T Consensus 2 ~~~~~~~~l~~~~a~~fG~f~LsSG~~SpyY~d~~~~~~~p~~~~~i~~~~a~~~~~~-~~~d~v~G~a~ggiP~A~~~a 80 (201)
T COG0461 2 YKRELAELLLEKGALKFGEFTLSSGRKSPYYVDLRLFLTGPELLQLIAFALAEIIKEA-LEFDVVAGPALGGIPLAAATA 80 (201)
T ss_pred hhHHHHHHHHHcCCeecCceeecCCCcCCeEEecccccCCHHHHHHHHHHHHHHhhcc-CCCcEEEeccccchHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999988875 579999999999999999999
Q ss_pred HHcC-CC-EEEEeeccCCcCccccccceeecCCcccccccccccceEeccccCCCEEEEEeccccccHHHHHHHHHHHhC
Q psy1963 87 VKYN-IP-MLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSV 164 (250)
Q Consensus 87 ~~l~-ip-~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~ 164 (250)
..++ .| ++++||+.|.||+. +.++|...+|++|||||||+|||+|+.++++.|+++
T Consensus 81 ~~l~~~~~~~~~Rke~K~hG~~----------------------~~ieG~~~~G~kVvvVEDViTTG~Si~eai~~l~~~ 138 (201)
T COG0461 81 LALAHLPPMAYVRKEAKDHGTG----------------------GLIEGGEVKGEKVVVVEDVITTGGSILEAVEALREA 138 (201)
T ss_pred HHhccCCcEEEEeceeccCCCc----------------------ceeEecCCCCCEEEEEEecccCCHhHHHHHHHHHHc
Confidence 9982 22 89999999999986 778887779999999999999999999999999999
Q ss_pred CCeEEEEEEEEeCCccHHHHHHhcCCcEEEeecHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q psy1963 165 GIVVTDVLTIVDREQGGRANLKQLGYTLHSLFTLSSVMDILYKANKIKVDTVEDVKKYLCN 225 (250)
Q Consensus 165 Ga~vv~~~vlvd~~~~~~~~l~~~g~~v~sl~~~~~l~~~~~~~~~i~~~~~~~v~~~l~~ 225 (250)
|+.|+++++++||++++.+.+++.|++++||++++|+++.+++.+.++.++......|+.+
T Consensus 139 G~~V~gv~~ivDR~~~~~~~~~~~g~~~~sl~tl~dl~~~~~~~~~~~~~~~~~~~~~~~~ 199 (201)
T COG0461 139 GAEVVGVAVIVDRQSGAKEVLKEYGVKLVSLVTLSDLLEVLYEAGDIPLEELAIPAEAYRS 199 (201)
T ss_pred CCeEEEEEEEEecchhHHHHHHhcCCceEEEeeHHHHHHHHHhccCCCHHHHHHHHHhhcc
Confidence 9999999999999989999999999999999999999999999999998888777776654
No 3
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=3.5e-42 Score=285.68 Aligned_cols=174 Identities=33% Similarity=0.526 Sum_probs=165.0
Q ss_pred HHHHHHHHHHHHHCCceeeCCccccCccccCeEeecccccCCHHHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHH
Q psy1963 5 QEKLNHLCLQLFDIDALKFGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATA 84 (250)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~g~f~l~sG~~s~~y~d~~~~~~~p~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~ 84 (250)
+++++++++.|++.|+++||+|+|+||++||+|+|++.++.+|++++.+++.|++.+.+. ++|.|+|++++|+|+|..
T Consensus 13 ~~~~~~l~~~l~~~ga~~~g~F~L~SG~~s~~yiD~~~~~~~p~~~~~i~~~la~~~~~~--~~d~I~g~~~~GiplA~~ 90 (187)
T PRK13810 13 ENQKQELIAALKACGAVRYGDFTLSSGKKSKYYIDIKKASTDPKTLKLIARQAALRIKEM--DVDTVAGVELGGVPLATA 90 (187)
T ss_pred HHHHHHHHHHHHHCCCeEecCEEEcCCCcCCEEEECchhcCCHHHHHHHHHHHHHHhccC--CCCEEEEEccchHHHHHH
Confidence 567889999999999999999999999999999999999999999999999999999754 699999999999999999
Q ss_pred HHHHcCCCEEEEeeccCCcCccccccceeecCCcccccccccccceEeccccCCCEEEEEeccccccHHHHHHHHHHHhC
Q psy1963 85 VSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSV 164 (250)
Q Consensus 85 lA~~l~ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~ 164 (250)
+|..+|+|++++||+.|.||.. .+++|.+.+|+||+|||||+|||+|+.+++++++++
T Consensus 91 vA~~l~~p~v~vRK~~k~~g~~----------------------~~~~g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~ 148 (187)
T PRK13810 91 VSLETGLPLLIVRKSVKDYGTG----------------------SRFVGDLKPEDRIVMLEDVTTSGGSVREAIEVVREA 148 (187)
T ss_pred HHHHhCCCEEEEecCCCccCCC----------------------ceEEccCCCcCEEEEEEeccCCChHHHHHHHHHHHC
Confidence 9999999999999999999876 556777789999999999999999999999999999
Q ss_pred CCeEEEEEEEEeCCccHHHHHHhcCCcEEEeecHHHHH
Q psy1963 165 GIVVTDVLTIVDREQGGRANLKQLGYTLHSLFTLSSVM 202 (250)
Q Consensus 165 Ga~vv~~~vlvd~~~~~~~~l~~~g~~v~sl~~~~~l~ 202 (250)
|++++++++++|+++++++.|++.|++++||+++++++
T Consensus 149 Ga~V~~v~vlvdr~~g~~~~l~~~gi~~~sl~~~~~~~ 186 (187)
T PRK13810 149 GAYIKYVITVVDREEGAEENLKEADVELVPLVSASDLL 186 (187)
T ss_pred CCEEEEEEEEEECCcChHHHHHHcCCcEEEEEEHHHhh
Confidence 99999999999999999999999999999999999986
No 4
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=100.00 E-value=3.5e-41 Score=313.12 Aligned_cols=193 Identities=35% Similarity=0.657 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHHHCCceeeCCccccCccccCeEeecccccCCHHHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHH
Q psy1963 5 QEKLNHLCLQLFDIDALKFGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATA 84 (250)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~g~f~l~sG~~s~~y~d~~~~~~~p~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~ 84 (250)
+...++|+..|++.|+++||+|+|+||++||+|+|++.++++|++++.+++.+++.+.+. ++|.|+|++++|+|+|+.
T Consensus 284 ~~~~~~l~~~l~~~~al~fG~F~L~SG~~S~~YiD~~~lls~P~~l~~v~~~la~~l~~~--~~D~I~Gia~gGiPlAt~ 361 (477)
T PRK05500 284 QHPHQDLILQLYDIGCLLFGEYVQASGATFSYYIDLRKIISNPQLFHQVLSAYAEILKNL--TFDRIAGIPYGSLPTATG 361 (477)
T ss_pred cCcHHHHHHHHHHCCCeEeCcEEECCcCcCCEEEEChhhhcCHHHHHHHHHHHHHHhccC--CCCEEEEEccchHHHHHH
Confidence 445678999999999999999999999999999999999999999999999999999754 599999999999999999
Q ss_pred HHHHcCCCEEEEeeccCCcCccccccceeecCCcccccccccccceEeccccCCCEEEEEeccccccHHHHHHHHHHHhC
Q psy1963 85 VSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSV 164 (250)
Q Consensus 85 lA~~l~ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~ 164 (250)
+|..+|+|++++||+.|.||+. ..++|.+.+|++|||||||+|||+|+.++++.|+++
T Consensus 362 lA~~lg~p~v~vRKe~K~~G~~----------------------~~ieG~~~~G~rVlIVDDViTTGgSi~eaie~l~~a 419 (477)
T PRK05500 362 LALHLHHPMIFPRKEVKAHGTR----------------------RLIEGNFHPGETVVVVDDILITGKSVMEGAEKLKSA 419 (477)
T ss_pred HHHHhCCCEEEEecCcCccCCC----------------------ceEecCCCCcCEEEEEEeccccCHHHHHHHHHHHHC
Confidence 9999999999999999999976 667888889999999999999999999999999999
Q ss_pred CCeEEEEEEEEeCCccHHHHHHhcCCcEEEeecHHHHHHHHHHcCCCCHHHHHHHHH
Q psy1963 165 GIVVTDVLTIVDREQGGRANLKQLGYTLHSLFTLSSVMDILYKANKIKVDTVEDVKK 221 (250)
Q Consensus 165 Ga~vv~~~vlvd~~~~~~~~l~~~g~~v~sl~~~~~l~~~~~~~~~i~~~~~~~v~~ 221 (250)
|+++++++|++||++++++.|++.|++++||++++++++.+++.+.|++++++.+.+
T Consensus 420 G~~V~~v~vlVDR~~g~~~~L~~~gv~~~Sl~tl~el~~~l~~~~~i~~~~~~~~~~ 476 (477)
T PRK05500 420 GLNVRDIVVFIDHEQGVKDKLQSHGYQAYSVLTISEITETLYQAGRINEEQYQALTE 476 (477)
T ss_pred CCEEEEEEEEEECCcchHHHHHhcCCCEEEEEEHHHHHHHHHHcCCCCHHHHHHhhc
Confidence 999999999999999899999999999999999999999999999999999888753
No 5
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=100.00 E-value=2.5e-39 Score=272.68 Aligned_cols=200 Identities=29% Similarity=0.482 Sum_probs=183.9
Q ss_pred HHHHHHHHHHHHHCCceeeCCccccCccccCeEeecccccCCHHHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHH
Q psy1963 5 QEKLNHLCLQLFDIDALKFGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATA 84 (250)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~g~f~l~sG~~s~~y~d~~~~~~~p~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~ 84 (250)
..+++++++.|++.||+++|+|.|+||++||+|+|++.++.+|+.++.++..|++++.+...++|+|+|++.+|+++|..
T Consensus 2 ~~~~~~~~~~~~~~~a~~~G~f~l~SG~~s~~y~d~~~i~~~p~~~~~~~~~la~~i~~~~~~~d~Ivgi~~gG~~~A~~ 81 (202)
T PRK00455 2 KMYAREFIEFLLEIGALLFGHFTLSSGRKSPYYFDCRKLLSYPEALALLGRFLAEAIKDSGIEFDVVAGPATGGIPLAAA 81 (202)
T ss_pred chHHHHHHHHHHHcCCeeCCCEEECCCCcCCeeEeChhhhcCHHHHHHHHHHHHHHHHhcCCCCCEEEecccCcHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999987655799999999999999999
Q ss_pred HHHHcCCCEEEEeeccCCcCccccccceeecCCcccccccccccceEeccccCCCEEEEEeccccccHHHHHHHHHHHhC
Q psy1963 85 VSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSV 164 (250)
Q Consensus 85 lA~~l~ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~ 164 (250)
+|..+++|+++.||..+.+|.. ..+++...+|++||||||+++||+|+.++++.|+++
T Consensus 82 la~~L~~~~~~~rk~~~~~g~~----------------------~~~~~~~~~g~~VliVDDvi~tG~Tl~~~~~~l~~~ 139 (202)
T PRK00455 82 VARALDLPAIFVRKEAKDHGEG----------------------GQIEGRRLFGKRVLVVEDVITTGGSVLEAVEAIRAA 139 (202)
T ss_pred HHHHhCCCEEEEecccCCCCCC----------------------ceEEccCCCCCEEEEEecccCCcHHHHHHHHHHHHc
Confidence 9999999999999987777654 334454557999999999999999999999999999
Q ss_pred CCeEEEEEEEEeCCccHHHHHHhcCCcEEEeecHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC
Q psy1963 165 GIVVTDVLTIVDREQGGRANLKQLGYTLHSLFTLSSVMDILYKANKIKVDTVEDVKKYLCNNQ 227 (250)
Q Consensus 165 Ga~vv~~~vlvd~~~~~~~~l~~~g~~v~sl~~~~~l~~~~~~~~~i~~~~~~~v~~~l~~~~ 227 (250)
|+++++++|++++++++++.+++.|++++||++++++..++. .+.+..++...+..|++++.
T Consensus 140 Ga~~v~~~vlv~~~~~~~~~~~~~g~~~~sl~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~ 201 (202)
T PRK00455 140 GAEVVGVAVIVDRQSAAQEVFADAGVPLISLITLDDLLEYAE-EGPLCKEGLPAVKAYRRNYG 201 (202)
T ss_pred CCEEEEEEEEEECcchHHHHHHhcCCcEEEEeeHHHHHHHHH-hCCCCHHHHHHHHHHHhhcC
Confidence 999999999999987888888899999999999999999998 68899999999999999874
No 6
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=1.1e-39 Score=268.62 Aligned_cols=171 Identities=32% Similarity=0.540 Sum_probs=160.6
Q ss_pred HHHHHHHHHCCceeeCCccccCccccCeEeecccccCCHHHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHHHHHH
Q psy1963 9 NHLCLQLFDIDALKFGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSVK 88 (250)
Q Consensus 9 ~~~~~~l~~~~~~~~g~f~l~sG~~s~~y~d~~~~~~~p~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~lA~~ 88 (250)
++|++.|.+.|+++||+|+|+||++||||+|++.+..+|++++.+++.|++.+.+ .|+|+|++.+|+|+|..+|..
T Consensus 4 ~~l~~~l~~~~a~~~g~f~l~SG~~S~~yid~~~~~~~p~~~~~i~~~l~~~i~~----~d~ivg~~~ggi~lA~~lA~~ 79 (176)
T PRK13812 4 DDLIAALRDADAVQFGEFELSHGGTSEYYVDKYLFETDPDCLRLIAEAFADRIDE----DTKLAGVALGAVPLVAVTSVE 79 (176)
T ss_pred HHHHHHHHHCCCEEeCCEEECcCCcCCEEEeCeeccCCHHHHHHHHHHHHHHhcc----CCEEEEeecchHHHHHHHHHH
Confidence 6799999999999999999999999999999999999999999999999999864 289999999999999999999
Q ss_pred cCCCEEEEeeccCCcCccccccceeecCCcccccccccccceEeccccCCCEEEEEeccccccHHHHHHHHHHHhCCCeE
Q psy1963 89 YNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVV 168 (250)
Q Consensus 89 l~ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~v 168 (250)
+|+|+++.||.+|.||.. ..++|.+.+|++||||||++|||+|+.++++.|+++|+++
T Consensus 80 l~~p~~~~rk~~k~yg~~----------------------~~~~g~~~~g~~VlIVDDvitTG~Tl~~~~~~l~~~Ga~v 137 (176)
T PRK13812 80 TGVPYVIARKQAKEYGTG----------------------NRIEGRLDEGEEVVVLEDIATTGQSAVDAVEALREAGATV 137 (176)
T ss_pred HCCCEEEEeccCCcCCCC----------------------CeEEecCCCcCEEEEEEEeeCCCHHHHHHHHHHHHCCCeE
Confidence 999999999998888765 4566766799999999999999999999999999999999
Q ss_pred EEEEEEEeCCccHHHHHHhcCCcEEEeecHHHHHHHH
Q psy1963 169 TDVLTIVDREQGGRANLKQLGYTLHSLFTLSSVMDIL 205 (250)
Q Consensus 169 v~~~vlvd~~~~~~~~l~~~g~~v~sl~~~~~l~~~~ 205 (250)
++++|++|+.+++++.+++.|++++||++++++++.+
T Consensus 138 v~~~vlvdr~~~~~~~l~~~g~~v~sL~~~~~~~~~~ 174 (176)
T PRK13812 138 NRVLVVVDREEGARENLADHDVELEALVTASDLLADR 174 (176)
T ss_pred EEEEEEEECCcchHHHHHhcCCcEEEEEeHHHHHhhh
Confidence 9999999999888999999999999999999998765
No 7
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=1.7e-37 Score=254.55 Aligned_cols=168 Identities=37% Similarity=0.585 Sum_probs=154.5
Q ss_pred HHHHHHHHHHCCceeeCCccccCccccCeEeecccccCCHHHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHHHHH
Q psy1963 8 LNHLCLQLFDIDALKFGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSV 87 (250)
Q Consensus 8 ~~~~~~~l~~~~~~~~g~f~l~sG~~s~~y~d~~~~~~~p~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~lA~ 87 (250)
.+++++.|.+.|++++|+|+|+||++||||+|++.++.+|+.++.+++.|++.+ ++|+|+|++.+|+|+|..+|.
T Consensus 2 ~~~~~~~l~~~ga~~~g~f~L~SG~~s~~y~d~~~l~~~p~~~~~l~~~l~~~~-----~~d~Vvg~~~gGi~~A~~~a~ 76 (170)
T PRK13811 2 VNTIAELLISYKAIEFGDFTLASGAKSRYYIDIKTAITHPALLKEIAAEVAKRY-----DFDVVAGVAVGGVPLAVAVSL 76 (170)
T ss_pred HHHHHHHHHHCCCEEECCEEEccCCcCCEEEeCchhccCHHHHHHHHHHHHhhC-----CCCEEEecCcCcHHHHHHHHH
Confidence 568999999999999999999999999999999999999999999998886543 489999999999999999999
Q ss_pred HcCCCEEEEeeccCCcCccccccceeecCCcccccccccccceEeccccCCCEEEEEeccccccHHHHHHHHHHHhCCCe
Q psy1963 88 KYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIV 167 (250)
Q Consensus 88 ~l~ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~ 167 (250)
.+|+|++++||+.|.||.. ....+. .+|++||||||++|||+|+.+++++|+++|++
T Consensus 77 ~l~~p~~~~rK~~k~~g~~----------------------~~~~g~-~~g~~VlIVDDvi~TG~T~~~~~~~l~~~Ga~ 133 (170)
T PRK13811 77 AAGKPYAIIRKEAKDHGKA----------------------GLIIGD-VKGKRVLLVEDVTTSGGSALYGIEQLRAAGAV 133 (170)
T ss_pred HHCCCEEEEecCCCCCCCc----------------------ceEEcc-cCCCEEEEEEecccccHHHHHHHHHHHHCCCe
Confidence 9999999999988888754 444554 48999999999999999999999999999999
Q ss_pred EEEEEEEEeCCccHHHHHHhcCCcEEEeecHHHHHH
Q psy1963 168 VTDVLTIVDREQGGRANLKQLGYTLHSLFTLSSVMD 203 (250)
Q Consensus 168 vv~~~vlvd~~~~~~~~l~~~g~~v~sl~~~~~l~~ 203 (250)
++++++++|+++++++.+++.|+|++||++++++++
T Consensus 134 v~~~~~~vdr~~g~~~~l~~~gv~~~sl~~~~~~~~ 169 (170)
T PRK13811 134 VDDVVTVVDREQGAEELLAELGITLTPLVRVSELLN 169 (170)
T ss_pred EEEEEEEEECCccHHHHHHhcCCcEEEEeEHHHHhc
Confidence 999999999998889999999999999999999853
No 8
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=100.00 E-value=4.3e-36 Score=247.12 Aligned_cols=165 Identities=33% Similarity=0.571 Sum_probs=150.7
Q ss_pred HHHHCCceeeCCccccCccccCeEeecccccCCHHHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHHHHHHcCCC-
Q psy1963 14 QLFDIDALKFGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSVKYNIP- 92 (250)
Q Consensus 14 ~l~~~~~~~~g~f~l~sG~~s~~y~d~~~~~~~p~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~lA~~l~ip- 92 (250)
.|++.+|++||+|+|+||++||+|+|++.++++|++++.+++.+++.+.+. .++|+|+|++++|+++|..+|..+++|
T Consensus 2 ~l~~~~a~~~g~f~l~SG~~s~~y~d~~~i~~~p~~~~~v~~~~~~~~~~~-~~~d~Ivg~~~gG~~~A~~la~~l~~~~ 80 (173)
T TIGR00336 2 LLLEVQALKFGEFTLSSGRKSPYYFNIKLFNTGPELANLIARYAAAIIKSH-LEFDVIAGPALGGIPIATAVSVKLAKPG 80 (173)
T ss_pred chhhcCCEEeCcEEECCCCcCCEEEECeecCChHHHHHHHHHHHHHHHHhc-CCCCEEEccccChHHHHHHHHHHhcCcC
Confidence 589999999999999999999999999999999999999999999998762 368999999999999999999999999
Q ss_pred ----EEEEeeccCCcCccccccceeecCCcccccccccccceEeccccCCCEEEEEeccccccHHHHHHHHHHHhCCCeE
Q psy1963 93 ----MLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVV 168 (250)
Q Consensus 93 ----~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~v 168 (250)
+++.||+.+.+|.. ..+++...+|++||||||+++||+|+.++++.|+++|+++
T Consensus 81 ~~~~~~~~rk~~k~~g~~----------------------~~~~g~~~~g~~VlIVDDvi~TG~Tl~~a~~~l~~~Ga~v 138 (173)
T TIGR00336 81 GDIPLCFNRKEAKDHGEG----------------------GNIEGELLEGDKVVVVEDVITTGTSILEAVEIIQAAGGQV 138 (173)
T ss_pred CCceEEEEcCCcccCCCC----------------------CceecCCCCCCEEEEEeccccChHHHHHHHHHHHHcCCeE
Confidence 99999988887765 3455666789999999999999999999999999999999
Q ss_pred EEEEEEEeCCc-cHHHHHHh-cCCcEEEeecHHHH
Q psy1963 169 TDVLTIVDREQ-GGRANLKQ-LGYTLHSLFTLSSV 201 (250)
Q Consensus 169 v~~~vlvd~~~-~~~~~l~~-~g~~v~sl~~~~~l 201 (250)
++++|++|+++ ++.+.+.+ .|+|++||++++++
T Consensus 139 ~~~~vlvdr~~~~~~~~l~~~~gv~~~sl~~~~~l 173 (173)
T TIGR00336 139 AGVIIAVDRQERSAGQEFEKEYGLPVISLITLKDL 173 (173)
T ss_pred EEEEEEEecCchhHHHHHHHhcCCeEEEEEeHhhC
Confidence 99999999986 67888865 49999999998874
No 9
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=100.00 E-value=9.7e-33 Score=229.56 Aligned_cols=160 Identities=26% Similarity=0.382 Sum_probs=141.7
Q ss_pred HHHHHHHCCceeeCCccccCccccCeEeecccccCCHHHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHHHHHHcC
Q psy1963 11 LCLQLFDIDALKFGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSVKYN 90 (250)
Q Consensus 11 ~~~~l~~~~~~~~g~f~l~sG~~s~~y~d~~~~~~~p~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~lA~~l~ 90 (250)
+++++++.|+++||+|+|+||++||+|+|++.++++|++++.+++.|++.+.+.+.++|+|+|++.+|+++|..+|..++
T Consensus 2 ~~~~~~~~~~~~~g~f~l~sg~~s~~yid~~~l~~~p~~~~~~~~~La~~i~~~~~~~d~Ivgi~~gGi~~A~~la~~L~ 81 (187)
T TIGR01367 2 VLDIYKQAGALHEGHFLLSSGKHSPYFLQSATLLEHPEALMELGGELAQKILDYGLKVDFIVGPAMGGVILGYEVARQLS 81 (187)
T ss_pred HHHHHHHcCCeeeceEEecCCCcCCeeEechhhhcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEccCcHHHHHHHHHHhC
Confidence 67889999999999999999999999999999999999999999999999986545689999999999999999999999
Q ss_pred CCEEEEeeccCCcCccccccceeecCCcccccccccccceEec-cccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEE
Q psy1963 91 IPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEG-VYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVT 169 (250)
Q Consensus 91 ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g-~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv 169 (250)
+|+++.++.. +.. ....+ .+.+|++||||||+++||+|+.++++.|+++|++++
T Consensus 82 ~~~i~~~k~~---~~~----------------------~~~~~~~l~~G~~VLIVDDIi~TG~Tl~~a~~~l~~~Ga~vv 136 (187)
T TIGR01367 82 VRSIFAEREG---GGM----------------------KLRRGFAVKPGEKFVAVEDVVTTGGSLLEAIRAIEGQGGQVV 136 (187)
T ss_pred CCeEEEEEeC---CcE----------------------EEeecccCCCCCEEEEEEeeecchHHHHHHHHHHHHcCCeEE
Confidence 9999988753 211 22222 235899999999999999999999999999999999
Q ss_pred EEEEEEeCCccHHHHHHhcCCcEEEeecH
Q psy1963 170 DVLTIVDREQGGRANLKQLGYTLHSLFTL 198 (250)
Q Consensus 170 ~~~vlvd~~~~~~~~l~~~g~~v~sl~~~ 198 (250)
+++|++++.+++. ...|++++||+++
T Consensus 137 ~~~vlid~~~~~~---~~~~~~~~sl~~~ 162 (187)
T TIGR01367 137 GLACIIDRSQGGK---PDSGVPLMSLKEL 162 (187)
T ss_pred EEEEEEECcCCCc---ccCCCCEEEEEEE
Confidence 9999999986543 3579999999986
No 10
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=99.96 E-value=8.8e-29 Score=206.22 Aligned_cols=178 Identities=19% Similarity=0.308 Sum_probs=145.3
Q ss_pred HHHHHHHHHCCceeeCCccccCccccCeEeecccccCCHHHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHHHHHH
Q psy1963 9 NHLCLQLFDIDALKFGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSVK 88 (250)
Q Consensus 9 ~~~~~~l~~~~~~~~g~f~l~sG~~s~~y~d~~~~~~~p~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~lA~~ 88 (250)
+.|++.|.+.+.+..|++. .+..|+|. ..+|++++.+++.|++++.+. ++|+|+|++.+||++|..+|..
T Consensus 2 ~~l~~~~~~~~~~~~~~~i-----~~~~~~~~---~~~p~~l~~v~~~l~~~~~~~--~~d~Vv~~ea~Gi~la~~lA~~ 71 (191)
T TIGR01744 2 ELLKQKIKEEGVVLPGGIL-----KVDSFLNH---QIDPKLMQEVGEEFARRFADD--GITKIVTIEASGIAPAIMTGLK 71 (191)
T ss_pred hHHHHHHhcCCEEcCCCEE-----EEehhhcc---ccCHHHHHHHHHHHHHHhccC--CCCEEEEEccccHHHHHHHHHH
Confidence 5789999999999999998 45588887 369999999999999999754 5899999999999999999999
Q ss_pred cCCCEEEEeeccCCcCccccccceeecCCccccccccc-ccceEec-cccCCCEEEEEeccccccHHHHHHHHHHHhCCC
Q psy1963 89 YNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYG-TKKLIEG-VYEKGDKCVIIEDVVTSGSSILETINDLKSVGI 166 (250)
Q Consensus 89 l~ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~i~g-~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga 166 (250)
+|+|++++||..|.++.....+..+. ++.. |. +...+++ .+.+|+|||||||++|||+|+.+++++++++|+
T Consensus 72 Lg~p~v~vRK~~k~~~~~~~~~~~~~-----s~~~-~~~~~l~i~~~~l~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa 145 (191)
T TIGR01744 72 LGVPVVFARKKKPLTLTDNLLTASVH-----SFTK-QTTSTVAVSGEFLSDQDRVLIIDDFLANGQAAHGLVDIAKQAGA 145 (191)
T ss_pred HCCCEEEEEeCCCCCCCCcceEEEEE-----Eeec-CccEEEEEEHHhCCCcCEEEEEEehhccChHHHHHHHHHHHCCC
Confidence 99999999998765543211111110 1111 11 1123343 456999999999999999999999999999999
Q ss_pred eEEEEEEEEeCC-ccHHHHHHhcCCcEEEeecHHHHH
Q psy1963 167 VVTDVLTIVDRE-QGGRANLKQLGYTLHSLFTLSSVM 202 (250)
Q Consensus 167 ~vv~~~vlvd~~-~~~~~~l~~~g~~v~sl~~~~~l~ 202 (250)
+++++++++++. +++++.|++.|+|++||++++++-
T Consensus 146 ~Vvgv~~lvd~~~~~g~~~l~~~gvpv~sL~~~~~l~ 182 (191)
T TIGR01744 146 KIAGIGIVIEKSFQNGRQELVELGYRVESLARIQSLE 182 (191)
T ss_pred EEEEEEEEEEecCccHHHHHHhcCCcEEEEEEEeeEe
Confidence 999999999998 688999989999999999987753
No 11
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=99.96 E-value=8e-28 Score=200.05 Aligned_cols=179 Identities=18% Similarity=0.295 Sum_probs=141.8
Q ss_pred HHHHHHHHHCCceeeCCccccCccccCeEeecccccCCHHHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHHHHHH
Q psy1963 9 NHLCLQLFDIDALKFGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSVK 88 (250)
Q Consensus 9 ~~~~~~l~~~~~~~~g~f~l~sG~~s~~y~d~~~~~~~p~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~lA~~ 88 (250)
+++++.+.+.+.+..|+|.+-| -|+|.. .+|++++.+++.|++.+.+. ++|+|+|++.+|||+|+.+|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~---~~P~~l~~i~~~la~~~~~~--~~D~Ivg~e~~GiplA~~lA~~ 71 (189)
T PRK09219 2 KLLEERILKDGKVLSGNILKVD-----SFLNHQ---VDPKLMNEIGKEFARRFKDE--GITKILTIEASGIAPAVMAALA 71 (189)
T ss_pred hHHHHHHhcCCEEcCCCEEEEh-----hhhccc---cCHHHHHHHHHHHHHHhccC--CCCEEEEEccccHHHHHHHHHH
Confidence 5788999999999989988433 234432 79999999999999999864 5899999999999999999999
Q ss_pred cCCCEEEEeeccCCcCccccccceeecCCccccccc-ccccceEeccccCCCEEEEEeccccccHHHHHHHHHHHhCCCe
Q psy1963 89 YNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKT-YGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIV 167 (250)
Q Consensus 89 l~ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~ 167 (250)
+|+|++++||.+|.+..+...+..+.+ ...+ ...+.+.++.+.+|+|||||||++|||+|+.+++++++++|++
T Consensus 72 Lg~p~v~vRK~~k~~~~~~~~~~~~~~-----~~~~~~~~l~i~~~~i~~G~rVlIVDDviaTGgT~~a~~~lv~~aGa~ 146 (189)
T PRK09219 72 LGVPVVFAKKKKSLTLTDDVYTATVYS-----FTKQVTSTVSVSKKFLSEGDRVLIIDDFLANGQAALGLIDIIEQAGAK 146 (189)
T ss_pred HCCCEEEEEECCCCCCCCceEEEEEee-----eccCceEEEEEEhhhCCCCCEEEEEeehhhcChHHHHHHHHHHHCCCE
Confidence 999999999987765322111111110 0000 0011233345679999999999999999999999999999999
Q ss_pred EEEEEEEEeCC-ccHHHHHHhcCCcEEEeecHHHHH
Q psy1963 168 VTDVLTIVDRE-QGGRANLKQLGYTLHSLFTLSSVM 202 (250)
Q Consensus 168 vv~~~vlvd~~-~~~~~~l~~~g~~v~sl~~~~~l~ 202 (250)
++++++++++. ++|++.|.+.|++++||++++++-
T Consensus 147 vvgv~~lvd~~~~~g~~~l~~~g~~~~sl~~~~~~~ 182 (189)
T PRK09219 147 VAGIGIVIEKSFQDGRKLLEEKGYRVESLARIASLE 182 (189)
T ss_pred EEEEEEEEEccCccHHHHHHhcCCcEEEEEEeeecc
Confidence 99999999997 578999988999999999987763
No 12
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=99.95 E-value=2.9e-26 Score=199.07 Aligned_cols=176 Identities=26% Similarity=0.382 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHHHCCceeeCCccccCccccCeEeecccccCCHHHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHH
Q psy1963 5 QEKLNHLCLQLFDIDALKFGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATA 84 (250)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~g~f~l~sG~~s~~y~d~~~~~~~p~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~ 84 (250)
.++.++|++.|.+.+++..|+|.+ ++.++.+|++++.+++.|++.+.+. ++|+|+|++++|+|+|.+
T Consensus 79 ~~~~~~l~~~l~~~~rilpgg~~~-----------~s~ll~~P~~l~~ig~~la~~~~~~--~iD~VvgvetkGIpLA~a 145 (268)
T TIGR01743 79 EEFVEELCQSLSEPERILPGGYLY-----------LTDILGKPSILSKIGKILASVFAER--EIDAVMTVATKGIPLAYA 145 (268)
T ss_pred HHHHHHHHHHHHHCCCcccCCeEE-----------echhhcCHHHHHHHHHHHHHHhcCC--CCCEEEEEccchHHHHHH
Confidence 677889999999999999999885 2346889999999999999999765 589999999999999999
Q ss_pred HHHHcCCCEEEEeeccCCcCccccccceeecCCcccccccccccceEeccccCCCEEEEEeccccccHHHHHHHHHHHhC
Q psy1963 85 VSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSV 164 (250)
Q Consensus 85 lA~~l~ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~ 164 (250)
+|..+|+|++++||+.|. +.+.+.+..|.++... ....+.+.+..+.+|+|||||||+++||+|+.+++++++++
T Consensus 146 vA~~L~vp~vivRK~~K~-t~g~~vs~nY~sgs~~----~ie~m~l~k~~l~~G~rVLIVDDv~~TGgTi~a~i~Ll~e~ 220 (268)
T TIGR01743 146 VASVLNVPLVIVRKDSKV-TEGSTVSINYVSGSSN----RIQTMSLAKRSLKTGSKVLIIDDFMKAGGTINGMINLLDEF 220 (268)
T ss_pred HHHHHCCCEEEEEECCCC-CCCCcEEEEEEcccCc----cceEEEEehhhCCCcCEEEEEeeecccCHHHHHHHHHHHHC
Confidence 999999999999998764 2222344444322100 00012333345678999999999999999999999999999
Q ss_pred CCeEEEEEEEEeCCccHHHHHHhcCCcEEEeecHHHHH
Q psy1963 165 GIVVTDVLTIVDREQGGRANLKQLGYTLHSLFTLSSVM 202 (250)
Q Consensus 165 Ga~vv~~~vlvd~~~~~~~~l~~~g~~v~sl~~~~~l~ 202 (250)
|+++++++|++++.+++ +. .+.+++||+++.++.
T Consensus 221 Ga~VvGv~vlve~~~~~-~~---l~~~~~SL~~~~~~~ 254 (268)
T TIGR01743 221 DAEVAGIGVLIDNEGVD-EK---LVDDYMSLLTLSNIN 254 (268)
T ss_pred CCEEEEEEEEEECCCCh-HH---cCCCceEEEEEeecc
Confidence 99999999999998553 33 456999999988774
No 13
>PRK09213 pur operon repressor; Provisional
Probab=99.94 E-value=5.6e-26 Score=197.71 Aligned_cols=176 Identities=24% Similarity=0.366 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHHCCceeeCCccccCccccCeEeecccccCCHHHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHH
Q psy1963 5 QEKLNHLCLQLFDIDALKFGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATA 84 (250)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~g~f~l~sG~~s~~y~d~~~~~~~p~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~ 84 (250)
.++.++|++.|.+.+.+.+|.|.+ .+.++.+|++++.+++.+++.+.+. ++|+|+|++++|+|+|..
T Consensus 81 ~~~~~~L~~~L~~~~rilpGgf~y-----------~sdll~~P~~l~~i~~~la~~~~~~--~iD~Vvtvet~GIplA~~ 147 (271)
T PRK09213 81 REFVEELCERLSEPDRILPGGYLY-----------LSDLLGNPSILRKIGRIIASAFADK--KIDAVMTVETKGIPLAYA 147 (271)
T ss_pred HHHHHHHHHHHHhCCccCCCCeEE-----------eCcccCCHHHHHHHHHHHHHHhccc--CCCEEEEEccccHHHHHH
Confidence 567889999999999999999884 2346889999999999999999764 589999999999999999
Q ss_pred HHHHcCCCEEEEeeccCCcCccccccceeecCCcccccccccccceEeccccCCCEEEEEeccccccHHHHHHHHHHHhC
Q psy1963 85 VSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSV 164 (250)
Q Consensus 85 lA~~l~ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~ 164 (250)
+|..+|+|++++||..|. +.+.+.+..|..+... ....+.+.++.+.+|+|||||||+++||+|+.+++++++++
T Consensus 148 vA~~L~vp~vivRK~~K~-~~G~~vs~~y~sgs~~----~ie~m~L~~~~l~~G~rVLIVDDv~~TGgTi~a~i~Ll~e~ 222 (271)
T PRK09213 148 VANYLNVPFVIVRRDSKV-TEGSTVSINYVSGSSK----RIETMSLSKRSLKEGSRVLIVDDFMKAGGTINGMISLLKEF 222 (271)
T ss_pred HHHHHCCCEEEEEECCCC-CCCCcEEEEEEecccc----cceEEEEeHhhcCCcCEEEEEeeecccCHhHHHHHHHHHHC
Confidence 999999999999998764 2232344343222100 00012233345679999999999999999999999999999
Q ss_pred CCeEEEEEEEEeCCccHHHHHHhcCCcEEEeecHHHHH
Q psy1963 165 GIVVTDVLTIVDREQGGRANLKQLGYTLHSLFTLSSVM 202 (250)
Q Consensus 165 Ga~vv~~~vlvd~~~~~~~~l~~~g~~v~sl~~~~~l~ 202 (250)
|+++++++|++++.+++ + +.+.+++||++++++.
T Consensus 223 Ga~VvGv~vlVd~~~~~-~---~l~~~~~SL~~~~~vd 256 (271)
T PRK09213 223 DAEVVGIGVLVETKEPE-E---RLVDDYVSLLKLSEVD 256 (271)
T ss_pred CCEEEEEEEEEECCCCh-h---hcCCceEEEEEEehhc
Confidence 99999999999998553 3 2356999999998774
No 14
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=99.94 E-value=2.4e-26 Score=191.20 Aligned_cols=163 Identities=23% Similarity=0.354 Sum_probs=127.1
Q ss_pred cccCccccCe---EeecccccCCHHHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHHHHHHcCCCEEEEeeccCCc
Q psy1963 27 VTKVGIKTPV---YLDLRGIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSVKYNIPMLIRRKDVKTY 103 (250)
Q Consensus 27 ~l~sG~~s~~---y~d~~~~~~~p~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~lA~~l~ip~~~~rk~~k~~ 103 (250)
++.||.++.+ |+|.+.++. |++++.+++.|++.+ + .++|+|+|++++|+++|..+|..+++|+.+.||.+...
T Consensus 12 ~~~~~~~~~~~~~~~D~~~~l~-P~~l~~~~~~l~~~~-~--~~~D~Ivg~e~~Gi~lA~~vA~~l~~p~~~~rk~~~~~ 87 (187)
T PRK12560 12 VVNSGKALTTVNEFTDQLPALR-PKVLKETAKEIIKYI-D--KDIDKIVTEEDKGAPLATPVSLLSGKPLAMARWYPYSL 87 (187)
T ss_pred ccCCCCCCCcceeEEeChhhcC-HHHHHHHHHHHHHHh-C--CCCCEEEEEccccHHHHHHHHHhhCCCEEEeccCCCcc
Confidence 3566666666 999999999 999999999999988 3 25999999999999999999999999999999864322
Q ss_pred CccccccceeecCCcccccccccccceEeccccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEEEeCCc-cHH
Q psy1963 104 GTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQ-GGR 182 (250)
Q Consensus 104 g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~~-~~~ 182 (250)
... .+....+.+ .+.......+...+|++||||||++|||+|+.+++++++++|++++++++++++++ ++.
T Consensus 88 ~~~-----~~~~~~~~~---~~~eg~~~~~~~~~G~rVlIVDDvitTG~T~~~ai~ll~~aGa~vv~v~~vvd~~~~~g~ 159 (187)
T PRK12560 88 SEL-----NYNVVEIGS---EYFEGVVYLNGIEKGDRVAIIDDTLSTGGTVIALIKAIENSGGIVSDVICVIEKTQNNGR 159 (187)
T ss_pred cce-----eEEeeeeec---cceeeeeEccCCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEEecccchH
Confidence 111 010000000 00000122233568999999999999999999999999999999999999999985 777
Q ss_pred HHH-HhcCCcEEEeecHHHH
Q psy1963 183 ANL-KQLGYTLHSLFTLSSV 201 (250)
Q Consensus 183 ~~l-~~~g~~v~sl~~~~~l 201 (250)
+.+ ++.|+|++||+++++.
T Consensus 160 ~~l~~~~gv~v~sl~~~~~~ 179 (187)
T PRK12560 160 KKLFTQTGINVKSLVKIDVK 179 (187)
T ss_pred HHHhhccCCcEEEEEEEEEe
Confidence 777 5689999999997654
No 15
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=99.94 E-value=1.9e-25 Score=187.81 Aligned_cols=152 Identities=25% Similarity=0.372 Sum_probs=122.8
Q ss_pred cCccccCeEeecccccCCHHHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHHHHHHcCCCEEEEeeccCCcCcccc
Q psy1963 29 KVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSVKYNIPMLIRRKDVKTYGTKKL 108 (250)
Q Consensus 29 ~sG~~s~~y~d~~~~~~~p~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~lA~~l~ip~~~~rk~~k~~g~~~~ 108 (250)
..+.++++|+|++.+..+|+.++.+++.|++.+...+.++|+|+|++.+|+|+|..+|..+++|+.+.++....++....
T Consensus 47 ~~~~~~~~yid~~~~~~~~~~l~~i~~~la~~i~~~~~~~D~Ivgi~~gG~~~A~~lA~~L~~~~~~~~~~k~~~~~~~~ 126 (200)
T PRK02277 47 KAPAPKDIHIDWSSIGSSSSRLRYIASAMADMLEKEDEEVDVVVGIAKSGVPLATLVADELGKDLAIYHPKKWDHGEGEK 126 (200)
T ss_pred CCCCCCCEEEEChhhccCHHHHHHHHHHHHHHHHhcCCCCCEEEeeccCCHHHHHHHHHHhCCCcEEEeccccccccccc
Confidence 44778999999999999999999999999999865555799999999999999999999999999887765333443210
Q ss_pred ccceeecCCcccccccccccceEec-cccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEEEeCCccHHHHHHh
Q psy1963 109 IEGVYEKGDKRKDVKTYGTKKLIEG-VYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQGGRANLKQ 187 (250)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~i~g-~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~~~~~~~l~~ 187 (250)
..+ ..... ...+|++||||||++|||+|+.++++.|+++|+++++++|++++. + .+. .
T Consensus 127 ~~~-----------------~~~~~~~~~~gk~VlIVDDVitTG~Tl~~ai~~l~~~Ga~~v~v~vlvdk~-g-~~~--~ 185 (200)
T PRK02277 127 KTG-----------------SFSRNFASVEGKRCVIVDDVITSGTTMKETIEYLKEHGGKPVAVVVLIDKS-G-IDE--I 185 (200)
T ss_pred ccc-----------------eeccccccCCcCEEEEEeeccCchHHHHHHHHHHHHcCCEEEEEEEEEECc-c-hhh--h
Confidence 000 00001 125899999999999999999999999999999999999999997 2 332 3
Q ss_pred cCCcEEEeecHHHH
Q psy1963 188 LGYTLHSLFTLSSV 201 (250)
Q Consensus 188 ~g~~v~sl~~~~~l 201 (250)
.|+|++||+++..+
T Consensus 186 ~~vpv~sl~~~~~~ 199 (200)
T PRK02277 186 DGVPVYSLIRVVRV 199 (200)
T ss_pred cCCCeEEEEEEEec
Confidence 58999999987543
No 16
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=99.93 E-value=6.7e-25 Score=188.76 Aligned_cols=155 Identities=19% Similarity=0.333 Sum_probs=125.1
Q ss_pred eEeecccccCCHHHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHHHHHHcCCCEEEEeeccCCcCccccccceeec
Q psy1963 36 VYLDLRGIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEK 115 (250)
Q Consensus 36 ~y~d~~~~~~~p~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~lA~~l~ip~~~~rk~~k~~g~~~~~~~~~~~ 115 (250)
-|+|++.++.+|++++.+++.+++.+... ++|+|++++++|+|+|..+|..+|+|++++||. +.+|.+...+ .|.+
T Consensus 82 gy~d~~~il~~p~~~~~v~~~la~~~~~~--~~D~Vvtv~~~GI~lA~~lA~~L~~p~vi~Rk~-~~~~~~~~v~-~y~s 157 (238)
T PRK08558 82 GYVDNSSVVFDPSFLRLIAPVVAERFMGL--RVDVVLTAATDGIPLAVAIASYFGADLVYAKKS-KETGVEKFYE-EYQR 157 (238)
T ss_pred CEEEchhhhcCHHHHHHHHHHHHHHccCC--CCCEEEEECcccHHHHHHHHHHHCcCEEEEEec-CCCCCcceEE-Eeec
Confidence 37899999999999999999999999754 589999999999999999999999999999986 4566553333 2221
Q ss_pred CCcccccccccccceEeccccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEEEeCCccHHHHHH-hcCCcEEE
Q psy1963 116 GDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQGGRANLK-QLGYTLHS 194 (250)
Q Consensus 116 ~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~~~~~~~l~-~~g~~v~s 194 (250)
.... ....+.+..+.+.+|++||||||+++||+|+.+++++++++|+++++++|++++.+.+.+++. +.|+|+.|
T Consensus 158 ~s~~----~~~~~~l~~~~l~~G~rVLIVDDvi~TG~Tl~~~~~ll~~~ga~vvgv~vlv~~~~~~~~~l~~~~~vpv~s 233 (238)
T PRK08558 158 LASG----IEVTLYLPASALKKGDRVLIVDDIIRSGETQRALLDLARQAGADVVGVFFLIAVGEVGIDRAREETDAPVDA 233 (238)
T ss_pred cCCC----ceeEEEecHHHcCCcCEEEEEecccccCHHHHHHHHHHHHcCCEEEEEEEEEecCchHHHHHhHhcCCCEEE
Confidence 1000 000112222456799999999999999999999999999999999999999999877666665 47999999
Q ss_pred eecH
Q psy1963 195 LFTL 198 (250)
Q Consensus 195 l~~~ 198 (250)
++++
T Consensus 234 l~~~ 237 (238)
T PRK08558 234 LYTL 237 (238)
T ss_pred EEEe
Confidence 9976
No 17
>PLN02293 adenine phosphoribosyltransferase
Probab=99.93 E-value=1.5e-24 Score=180.14 Aligned_cols=161 Identities=23% Similarity=0.374 Sum_probs=131.5
Q ss_pred eeeCCccccCccccCeEeecccccCCHHHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHHHHHHcCCCEEEEeecc
Q psy1963 21 LKFGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSVKYNIPMLIRRKDV 100 (250)
Q Consensus 21 ~~~g~f~l~sG~~s~~y~d~~~~~~~p~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~lA~~l~ip~~~~rk~~ 100 (250)
-.+.+|+ +.|. .|+|++.++.+|+.++.+++.|++++.+. ++|+|+|++.+|+++|..+|..+|+|++++||.+
T Consensus 22 ~~~~~~p-~~gi---~f~D~~~l~~~p~~~~~~~~~l~~~~~~~--~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~rK~~ 95 (187)
T PLN02293 22 RVVPDFP-KPGI---MFQDITTLLLDPKAFKDTIDLFVERYRDM--GISVVAGIEARGFIFGPPIALAIGAKFVPLRKPG 95 (187)
T ss_pred ccCCCCC-cCCc---EEEECHHHhhCHHHHHHHHHHHHHHHhhc--CCCEEEEeCCCchHHHHHHHHHHCCCEEEEEecC
Confidence 3347798 7777 89999999999999999999999999765 5899999999999999999999999999999987
Q ss_pred CCcCccccccceeecCCcccccccccc--cceEeccccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEEEeCC
Q psy1963 101 KTYGTKKLIEGVYEKGDKRKDVKTYGT--KKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDRE 178 (250)
Q Consensus 101 k~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~ 178 (250)
|..+.. ....+ ..+|+. .....+.+.+|++||||||++|||+|+.+++++|+++|+++++++++++..
T Consensus 96 k~~~~~--~~~~~--------~~~~g~~~l~l~~~~i~~G~rVlIVDDvitTG~T~~~~~~~l~~~Ga~~v~~~~~~~~~ 165 (187)
T PLN02293 96 KLPGEV--ISEEY--------VLEYGTDCLEMHVGAVEPGERALVIDDLIATGGTLCAAINLLERAGAEVVECACVIELP 165 (187)
T ss_pred CCCCce--EEEEE--------eccCCceEEEEEcCccCCCCEEEEEeccccchHHHHHHHHHHHHCCCEEEEEEEEEEcC
Confidence 654332 11111 112322 122336667899999999999999999999999999999999999999986
Q ss_pred -ccHHHHHHhcCCcEEEeecHH
Q psy1963 179 -QGGRANLKQLGYTLHSLFTLS 199 (250)
Q Consensus 179 -~~~~~~l~~~g~~v~sl~~~~ 199 (250)
.++.+.+. +++++||++++
T Consensus 166 ~~~g~~~l~--~~~~~sl~~~~ 185 (187)
T PLN02293 166 ELKGREKLN--GKPLFVLVESR 185 (187)
T ss_pred CccHHHHhc--CCceEEEEecC
Confidence 56787775 57999998753
No 18
>KOG1712|consensus
Probab=99.93 E-value=2.1e-25 Score=175.94 Aligned_cols=168 Identities=21% Similarity=0.349 Sum_probs=146.0
Q ss_pred HHCCceeeCCccccCccccCeEeecccccCCHHHHHHHHHHHHHHHhhcC-CCccEEEecCCCCHHHHHHHHHHcCCCEE
Q psy1963 16 FDIDALKFGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNINK-ISARTVCGVPYTALPIATAVSVKYNIPML 94 (250)
Q Consensus 16 ~~~~~~~~g~f~l~sG~~s~~y~d~~~~~~~p~~~~~l~~~la~~i~~~~-~~~d~Ivgv~~~Gi~~a~~lA~~l~ip~~ 94 (250)
++...-.+.+|+ +.|. .|-|+..++.||..++.+...+++++.+.. ..+|+|+|++.+||.++..+|.++|.+++
T Consensus 11 ik~~ir~~pdFP-k~GI---~F~Di~pll~dP~af~~lidlf~~h~~~~~~~~Id~iaGlEaRGFLFGP~iAlalG~~fV 86 (183)
T KOG1712|consen 11 IKTAIRVVPDFP-KKGI---MFQDITPLLLDPKAFKKLIDLFVDHYRETFEMKIDVIAGLEARGFLFGPSIALALGAGFV 86 (183)
T ss_pred HHHhheeCCCCC-CCce---ehhhhhhhhcCHHHHHHHHHHHHHHHHHHhcCcceEEEeeeecceecCcHHHHHhCCCee
Confidence 445556678999 8888 899999999999999999999999999843 46999999999999999999999999999
Q ss_pred EEeeccCCcCccccccceeecCCcccccccccc--cceEeccccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEE
Q psy1963 95 IRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGT--KKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVL 172 (250)
Q Consensus 95 ~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~ 172 (250)
.+||..|-.|.. +.. ++.++|+. +.+..+.+.+|+||+||||+++||+|+.+|.+++.+.|++++.++
T Consensus 87 PiRK~gKLPG~~--i~~--------~Y~lEYg~d~~Emq~~Ai~~g~rvvvVDDllATGGTl~AA~~Ll~r~ga~vvE~~ 156 (183)
T KOG1712|consen 87 PIRKPGKLPGEV--ISE--------SYELEYGEDRFEMQKGAIKPGQRVVVVDDLLATGGTLAAATELLERVGAEVVECA 156 (183)
T ss_pred ecccCCCCCCce--eEE--------EEeeecCccceeeeccccCCCCeEEEEechhhcCccHHHHHHHHHHhccEEEEEE
Confidence 999998888765 333 45667763 566678889999999999999999999999999999999999999
Q ss_pred EEEeCC-ccHHHHHHhcCCcEEEeecHH
Q psy1963 173 TIVDRE-QGGRANLKQLGYTLHSLFTLS 199 (250)
Q Consensus 173 vlvd~~-~~~~~~l~~~g~~v~sl~~~~ 199 (250)
++++.. -+|++.|. +.|+++|++..
T Consensus 157 ~vieL~~LkGr~kL~--~~pl~~Ll~~~ 182 (183)
T KOG1712|consen 157 CVIELPELKGREKLK--GKPLFSLLEYQ 182 (183)
T ss_pred EEEEccccCCccccC--CCccEEEeecC
Confidence 999987 47888775 77999998754
No 19
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=99.93 E-value=1.2e-24 Score=179.36 Aligned_cols=151 Identities=23% Similarity=0.414 Sum_probs=121.7
Q ss_pred CeEeecccccCCHHHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHHHHHHcCCCEEEEeeccCCcCccccccceee
Q psy1963 35 PVYLDLRGIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYE 114 (250)
Q Consensus 35 ~~y~d~~~~~~~p~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~lA~~l~ip~~~~rk~~k~~g~~~~~~~~~~ 114 (250)
..|.|++.++.+|+.++.+++.+++.+.+. ++|+|+|++.+|+++|..+|..+|+|+++.||..+..+. .....+.
T Consensus 21 ~~~~d~~~l~~~p~~~~~~~~~la~~~~~~--~~d~Ivgv~~~Gi~~a~~la~~l~~p~~~~rk~~~~~~~--~~~~~~~ 96 (175)
T PRK02304 21 ILFRDITPLLADPEAFREVIDALVERYKDA--DIDKIVGIEARGFIFGAALAYKLGIGFVPVRKPGKLPRE--TISESYE 96 (175)
T ss_pred cEEEeChhHhcCHHHHHHHHHHHHHHhccC--CCCEEEEEccchHHHHHHHHHHhCCCEEEEEcCCCCCCc--eEeEEEe
Confidence 367899999999999999999999999754 589999999999999999999999999999987543211 1111111
Q ss_pred cCCcccccccccccce-Ee-ccccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEEEeCCc-cHHHHHHhcCCc
Q psy1963 115 KGDKRKDVKTYGTKKL-IE-GVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQ-GGRANLKQLGYT 191 (250)
Q Consensus 115 ~~~~~~~~~~~~~~~~-i~-g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~~-~~~~~l~~~g~~ 191 (250)
..+++..+ +. +...+|++||||||++|||+|+.++++.|+++|++++++++++++++ +|.+.++ |++
T Consensus 97 --------~~~~~~~l~l~~~~~~~g~~VLIVDDivtTG~Tl~~~~~~l~~~Ga~~v~v~vl~~~~~~~g~~~l~--~~~ 166 (175)
T PRK02304 97 --------LEYGTDTLEIHKDAIKPGDRVLIVDDLLATGGTLEAAIKLLERLGAEVVGAAFVIELPDLGGREKLE--GYP 166 (175)
T ss_pred --------cccCceEEEEchhhcCCCCEEEEEeCCccccHHHHHHHHHHHHcCCEEEEEEEEEEcccccchhhcC--CCc
Confidence 11111111 22 23468999999999999999999999999999999999999999984 6777776 999
Q ss_pred EEEeecHH
Q psy1963 192 LHSLFTLS 199 (250)
Q Consensus 192 v~sl~~~~ 199 (250)
++||++++
T Consensus 167 ~~sl~~~~ 174 (175)
T PRK02304 167 VKSLVKFD 174 (175)
T ss_pred eEEEEEeC
Confidence 99999864
No 20
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=99.91 E-value=2.2e-23 Score=170.99 Aligned_cols=157 Identities=21% Similarity=0.390 Sum_probs=124.5
Q ss_pred CCccccCccccCeEeecccccCCHHHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHHHHHHcCCCEEEEeeccCCc
Q psy1963 24 GDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSVKYNIPMLIRRKDVKTY 103 (250)
Q Consensus 24 g~f~l~sG~~s~~y~d~~~~~~~p~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~lA~~l~ip~~~~rk~~k~~ 103 (250)
.+|+ ..|. .|+|++.++.+|+.++.+++.+++++.+. ++|+|+|++.+|+++|..+|..+++|++..+|..+..
T Consensus 9 ~~~~-~~~~---~~~d~~~~l~~p~~~~~~~~~la~~i~~~--~~d~ivgi~~~G~~~A~~la~~L~~~~~~i~k~~~~~ 82 (169)
T TIGR01090 9 PDFP-KKGI---LFRDITPLLNNPELFRFLIDLLVERYKDA--NIDYIVGPEARGFIFGAALAYKLGVGFVPVRKPGKLP 82 (169)
T ss_pred CCCC-CCCc---eeEeChhhhcCHHHHHHHHHHHHHHhccC--CCCEEEeehhccHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 4577 5555 89999999999999999999999999765 4899999999999999999999999998888864422
Q ss_pred CccccccceeecCCcccccccccc--cceEeccccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEEEeCC-cc
Q psy1963 104 GTKKLIEGVYEKGDKRKDVKTYGT--KKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDRE-QG 180 (250)
Q Consensus 104 g~~~~~~~~~~~~~~~~~~~~~~~--~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~-~~ 180 (250)
+.. ....+. ..+++ .........+|++|||||||+|||+|+.++++.|+++|++++++++++++. ++
T Consensus 83 ~~~--~~~~~~--------~~~~~~~~~~~~~~~~~gk~VLIVDDIitTG~Tl~~a~~~L~~~Ga~~v~~~~l~~~~~~~ 152 (169)
T TIGR01090 83 GET--ISASYD--------LEYGKDQLEIHKDAIKPGQRVLIVDDLLATGGTAEATDELIRKLGGEVVEAAFLIELKDLN 152 (169)
T ss_pred Cce--eeeEEe--------eccCceEEEEehhhcCCcCEEEEEeccccchHHHHHHHHHHHHcCCEEEEEEEEEEccccC
Confidence 211 111110 01111 011112345899999999999999999999999999999999999999997 57
Q ss_pred HHHHHHhcCCcEEEeec
Q psy1963 181 GRANLKQLGYTLHSLFT 197 (250)
Q Consensus 181 ~~~~l~~~g~~v~sl~~ 197 (250)
|.+.+.+. ++++||++
T Consensus 153 g~~~i~~~-~~~~sl~~ 168 (169)
T TIGR01090 153 GRAKLEPN-VPVFSLLE 168 (169)
T ss_pred hHHHhccC-CceEEEEe
Confidence 88888765 99999975
No 21
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=99.91 E-value=3.3e-23 Score=171.19 Aligned_cols=172 Identities=21% Similarity=0.375 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHHCCceeeCCccccCccccCeEeecccccCCHHHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHHH
Q psy1963 6 EKLNHLCLQLFDIDALKFGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAV 85 (250)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~g~f~l~sG~~s~~y~d~~~~~~~p~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~l 85 (250)
+..+.+.+.+.+.+.+..+.+ .|.|....+.+|.+.......+++.+.+. .+|.|+|++++||++|..+
T Consensus 3 ~~~~~L~~~i~~~~~~~~~g~---------~f~d~~~~~~~~~~~~~~i~~~~~~~~~~--~id~Iv~iea~Gi~~a~~v 71 (179)
T COG0503 3 ELMELLKDSIREIPDFPKGGI---------LFVDITLLLGDPELLAKLIDELAERYKDD--GIDKIVTIEARGIPLAAAV 71 (179)
T ss_pred hHHHHHHHHHhhcccccCCCc---------eEEecchhhcCcHHHHHHHHHHHHHhccc--CCCEEEEEccccchhHHHH
Confidence 456667777777766654443 45677778899999999988999998876 4999999999999999999
Q ss_pred HHHcCCCEEEEeeccCCcCccccccceeecCCccccccccc--ccceEeccccCCCEEEEEeccccccHHHHHHHHHHHh
Q psy1963 86 SVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYG--TKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKS 163 (250)
Q Consensus 86 A~~l~ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~ 163 (250)
|..||+|++++||.+|..... ... ++..+|+ ......+.+.+|+|||||||+++||+|+.++++++++
T Consensus 72 A~~Lgvp~v~vRK~~kl~~~~--~~~--------~~~~~~~~~~l~~~~~~l~~G~rVlIVDDllaTGgT~~a~~~Ll~~ 141 (179)
T COG0503 72 ALELGVPFVPVRKKGKLPEES--VVE--------TYYLEYGSETLELHKDALKPGDRVLIVDDLLATGGTALALIELLEQ 141 (179)
T ss_pred HHHhCCCEEEEEecCCCCCcc--eeE--------EEEEeccceEEEEEhhhCCCCCEEEEEecchhcChHHHHHHHHHHH
Confidence 999999999999986644332 111 1122221 1234445667899999999999999999999999999
Q ss_pred CCCeEEEEEEEEeCCc-cHHHHHHhcCCcEEEeecH
Q psy1963 164 VGIVVTDVLTIVDREQ-GGRANLKQLGYTLHSLFTL 198 (250)
Q Consensus 164 ~Ga~vv~~~vlvd~~~-~~~~~l~~~g~~v~sl~~~ 198 (250)
+|+++++++++++.++ +++..+...++++++|..+
T Consensus 142 ~ga~vvg~~~~ie~~~~~gr~~l~~~~~~v~~l~~~ 177 (179)
T COG0503 142 AGAEVVGAAFVIELGELDGRKKLEDDGLPVFSLVRI 177 (179)
T ss_pred CCCEEEEEEEEEEcCccccchhhccCCceEEEEEec
Confidence 9999999999999984 5677777777999988764
No 22
>PRK06031 phosphoribosyltransferase; Provisional
Probab=99.86 E-value=1e-20 Score=162.06 Aligned_cols=159 Identities=19% Similarity=0.246 Sum_probs=113.7
Q ss_pred eEeecccccCCH---HHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHHHHHHcCCC-EEEEeeccCCcCccccccc
Q psy1963 36 VYLDLRGIISYP---KLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSVKYNIP-MLIRRKDVKTYGTKKLIEG 111 (250)
Q Consensus 36 ~y~d~~~~~~~p---~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~lA~~l~ip-~~~~rk~~k~~g~~~~~~~ 111 (250)
++.|+..++.++ +.++.+++.|++++... ++|+|+|++++|+++|..+|..||++ ++..++.+|.+....+. .
T Consensus 52 ~~~~i~~ll~~~~~~~~~~~la~~La~~~~~~--~~DvIVgv~~~Gi~lA~~lA~~Lg~~~~vpl~~~rK~~~~~~l~-~ 128 (233)
T PRK06031 52 GDRALASLIVNQASFEVLDALAEHLAEKARAF--DPDVVAGLPTLGLTLAAAVARKLGHTRYVPLGTSRKFWYRDELS-V 128 (233)
T ss_pred CCCchhhHhCChhHHHHHHHHHHHHHHHcccC--CCcEEEEeccCCHHHHHHHHHHHCCCCceEEEEccccccccccc-c
Confidence 445777788887 55667899999988654 58999999999999999999999974 44444433332211000 0
Q ss_pred eeecCCcccccccccccceEec---cccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEEEeCCccHHHHHHhc
Q psy1963 112 VYEKGDKRKDVKTYGTKKLIEG---VYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQGGRANLKQL 188 (250)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~i~g---~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~~~~~~~l~~~ 188 (250)
... . .+ .....+...+.+ ...+|+||||||||++||+|+.+++++|+++|++++++++++++++++++.|.+.
T Consensus 129 ~~~--s-it-t~~~~~~~~l~~~~~~~~~GkrVLIVDDVitTG~Tl~aa~~lL~~~Ga~Vvgv~v~v~~g~~~~~~l~~~ 204 (233)
T PRK06031 129 PLS--S-IT-TPDQGKRLYIDPRMLPLLEGRRVALIDDVISSGASIVAGLRLLAACGIEPAGIGAAMLQSERWRESLAAA 204 (233)
T ss_pred cee--e-ee-ccCccceEEecccccccCCCCEEEEEEeEccccHHHHHHHHHHHHcCCeEEEEEEEEEccccHHHHHHhc
Confidence 000 0 00 000000011221 1358999999999999999999999999999999999999999999999999876
Q ss_pred C----CcEEEeecHHHH
Q psy1963 189 G----YTLHSLFTLSSV 201 (250)
Q Consensus 189 g----~~v~sl~~~~~l 201 (250)
| .++.+++++.-+
T Consensus 205 ~~~~~~~~~~~~~~p~~ 221 (233)
T PRK06031 205 GPQWPARVVGVFATPIL 221 (233)
T ss_pred CCCcccceEEEeecccc
Confidence 5 788888876433
No 23
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=99.86 E-value=3e-21 Score=154.40 Aligned_cols=143 Identities=27% Similarity=0.420 Sum_probs=113.4
Q ss_pred cCeEeecccccCCHHHHHHHHHHHHHHH-hhcCCCccEEEecCCCCHHHHHHHHHHcCCCEEEEe--eccCCcCcccccc
Q psy1963 34 TPVYLDLRGIISYPKLMDYLSTIINDYL-NINKISARTVCGVPYTALPIATAVSVKYNIPMLIRR--KDVKTYGTKKLIE 110 (250)
Q Consensus 34 s~~y~d~~~~~~~p~~~~~l~~~la~~i-~~~~~~~d~Ivgv~~~Gi~~a~~lA~~l~ip~~~~r--k~~k~~g~~~~~~ 110 (250)
.++|+||+.+...+..++.++..|++.+ .+.+.++|+|+|++..|+|+|+.+|..||..|.+.+ |.++.-|.+ ..
T Consensus 52 ~Di~i~W~siG~s~sRl~~Is~am~Dm~m~~~~~evDvVvGIa~sGvPlAtmvA~elg~elaiY~PrK~~~de~~~--~~ 129 (203)
T COG0856 52 VDIKIDWRSIGKSGSRLRYISEAMADMIMEKVSFEVDVVVGIAISGVPLATMVAYELGKELAIYHPRKHRKDEGAG--KG 129 (203)
T ss_pred cceEEechhhccchHHHHHHHHHHHHHHHHhccceeEEEEEEeecCccHHHHHHHHhCCceEEEecccccccccCC--cC
Confidence 3789999999999999999999999954 444678999999999999999999999999987554 443332221 11
Q ss_pred ceeecCCcccccccccccceEec-cccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEEEeCCccHHHHHHhcC
Q psy1963 111 GVYEKGDKRKDVKTYGTKKLIEG-VYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQGGRANLKQLG 189 (250)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~i~g-~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~~~~~~~l~~~g 189 (250)
+.+ -++ .-..||||+||||++|||+|+.++++.|++.|++.+.|+|++|+. + ... -.|
T Consensus 130 G~i-----------------S~NFa~V~gK~cvIVDDvittG~Ti~E~Ie~lke~g~kpv~v~VL~dK~-G-~de--i~g 188 (203)
T COG0856 130 GSI-----------------SSNFASVEGKRCVIVDDVITTGSTIKETIEQLKEEGGKPVLVVVLADKK-G-VDE--IEG 188 (203)
T ss_pred cee-----------------ecccccccCceEEEEecccccChhHHHHHHHHHHcCCCcEEEEEEEccC-C-ccc--ccC
Confidence 111 111 125899999999999999999999999999999999999999997 2 222 258
Q ss_pred CcEEEeecHH
Q psy1963 190 YTLHSLFTLS 199 (250)
Q Consensus 190 ~~v~sl~~~~ 199 (250)
+|+.||+.+.
T Consensus 189 vPi~sLlri~ 198 (203)
T COG0856 189 VPVESLLRIL 198 (203)
T ss_pred cchHHhheee
Confidence 9999987653
No 24
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=99.84 E-value=8.6e-20 Score=150.85 Aligned_cols=137 Identities=19% Similarity=0.269 Sum_probs=105.4
Q ss_pred CeEeecccccCCHHHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHHHHHHcCCCEEEEeeccCCcCccccccceee
Q psy1963 35 PVYLDLRGIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYE 114 (250)
Q Consensus 35 ~~y~d~~~~~~~p~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~lA~~l~ip~~~~rk~~k~~g~~~~~~~~~~ 114 (250)
.+|++...++.+|.+++.+++.|++.+.+ ++|+|+|++.+|+++|..+|..+|+|+++.||..+.+...........
T Consensus 23 ~~~i~~~k~~~dp~l~~~~~~~La~~l~~---~~d~Iv~v~~gGiplA~~lA~~L~~p~~~~~k~~~~~~~~~~~~~~~~ 99 (178)
T PRK07322 23 DLAIALFVILGDTELTEAAAEALAKRLPT---EVDVLVTPETKGIPLAHALSRRLGKPYVVARKSRKPYMQDPIIQEVVS 99 (178)
T ss_pred CCEEEEEhhhCCHHHHHHHHHHHHHHcCC---CCCEEEEeccCCHHHHHHHHHHHCCCEEEEEEeCCCCCCCceEEEEEE
Confidence 35788889999999999999999999875 489999999999999999999999999988886555433211111000
Q ss_pred cCCcccccccccccceEecc---ccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEEEeCCcc
Q psy1963 115 KGDKRKDVKTYGTKKLIEGV---YEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQG 180 (250)
Q Consensus 115 ~~~~~~~~~~~~~~~~i~g~---~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~~~ 180 (250)
......+.....+. ..+|++||||||++|||+|+.++++.|+++|++++++++++++++.
T Consensus 100 ------~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~aa~~~L~~~GA~~V~~~~v~~~~~~ 162 (178)
T PRK07322 100 ------ITTGKPQLLVLDGADAEKLKGKRVAIVDDVVSTGGTLTALERLVERAGGQVVAKAAIFAEGDA 162 (178)
T ss_pred ------EEeccceEEEecCccccccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEcCCC
Confidence 00000000112221 2479999999999999999999999999999999999999999854
No 25
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=99.80 E-value=3.8e-19 Score=137.86 Aligned_cols=123 Identities=24% Similarity=0.408 Sum_probs=94.9
Q ss_pred cccCCHHHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHHHHHHcCCCEEEEeeccCCcC-ccccccceeecCCccc
Q psy1963 42 GIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSVKYNIPMLIRRKDVKTYG-TKKLIEGVYEKGDKRK 120 (250)
Q Consensus 42 ~~~~~p~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~lA~~l~ip~~~~rk~~k~~g-~~~~~~~~~~~~~~~~ 120 (250)
.++.+++.+..+++.+++++.+.+.++|.|+|++++|+++|..+|..+++|+.+.++....+. .. ....
T Consensus 2 ~i~~~~~~~~~~~~~la~~i~~~~~~~~~ivgi~~~G~~~a~~la~~l~~~~~~~~~~~~~~~~~~--~~~~-------- 71 (125)
T PF00156_consen 2 KIILSPEQIEALAERLAEQIKESGFDFDVIVGIPRGGIPLAAALARALGIPLVFVRKRKSYYPGSD--KTSR-------- 71 (125)
T ss_dssp EEEEBHHHHHHHHHHHHHHHHHHTTTSSEEEEETTTTHHHHHHHHHHHTHEEEEEEEEEEEESEEE--EEEE--------
T ss_pred EEEEcHHHHHHHHHHHHHHHHHhCCCCCEEEeehhccHHHHHHHHHHhCCCccceeeeecccccch--hhhh--------
Confidence 356688999999999999999988788999999999999999999999999887766421110 00 0000
Q ss_pred ccccccccceEeccccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEEE
Q psy1963 121 DVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIV 175 (250)
Q Consensus 121 ~~~~~~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vlv 175 (250)
...............+|++||||||+++||+|+.++++.|+++|++++++++++
T Consensus 72 -~~~~~~~~~~~~~~~~gk~vliVDDvi~tG~Tl~~~~~~L~~~g~~~v~~~vl~ 125 (125)
T PF00156_consen 72 -EKNNQELFIIDKEDIKGKRVLIVDDVIDTGGTLKEAIELLKEAGAKVVGVAVLV 125 (125)
T ss_dssp -ETEEEEEEEEESSSGTTSEEEEEEEEESSSHHHHHHHHHHHHTTBSEEEEEEEE
T ss_pred -ccCceEEeecccccccceeEEEEeeeEcccHHHHHHHHHHHhCCCcEEEEEEEC
Confidence 000000122333457999999999999999999999999999999999999875
No 26
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=99.72 E-value=3.4e-16 Score=129.52 Aligned_cols=175 Identities=18% Similarity=0.247 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHhhcC-CCccEEEecCCCCHHHHHHHHHHcCCCE--EEEeecc----CCcCccccccce-eecC-Cc-c-
Q psy1963 51 DYLSTIINDYLNINK-ISARTVCGVPYTALPIATAVSVKYNIPM--LIRRKDV----KTYGTKKLIEGV-YEKG-DK-R- 119 (250)
Q Consensus 51 ~~l~~~la~~i~~~~-~~~d~Ivgv~~~Gi~~a~~lA~~l~ip~--~~~rk~~----k~~g~~~~~~~~-~~~~-~~-~- 119 (250)
...++.|++.|.... .+.-+|+|+|+||+|+|..+|..+|.|+ +++||-. .+.+.+++.++. ...+ .. .
T Consensus 8 ~dAGr~La~~l~~~~~~~~~iVlaLpRGGvpva~evA~~lga~ldvliVrKiG~P~n~E~aiGAvae~g~~v~n~~~~~~ 87 (220)
T COG1926 8 TDAGRKLAQELAALRDLKDVIVLALPRGGVPVAFEVAQALGAPLDVLIVRKIGAPGNPELAIGAVAEGGDVVLNYDVVRS 87 (220)
T ss_pred HHHHHHHHHHHHhhccCCCcEEEEecCCCchHHHHHHHHhCCCeeEEEEeecCCCCCchhceeeeccCCcEecchhhhhh
Confidence 355667777776654 2455899999999999999999999996 6788853 233333444433 1111 00 0
Q ss_pred ---c----------ccccccc-cceEec----cccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEEEeCCccH
Q psy1963 120 ---K----------DVKTYGT-KKLIEG----VYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQGG 181 (250)
Q Consensus 120 ---~----------~~~~~~~-~~~i~g----~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~~~~ 181 (250)
+ +..+..+ ...+.+ ...+|++|+||||.+.||+||.++++.+++.+++.+.++|.+... .+
T Consensus 88 ~~i~~~~i~~~~~~e~~El~rrr~~yr~~~~~~~~~g~~VIlVDDGiATGatm~aAi~~~r~~~~~~IviAVPV~p~-~a 166 (220)
T COG1926 88 LGIDDAYIEAAAARERKELLRRREAYRGGRPVPSLKGRTVILVDDGIATGATMKAAVRALRAKGPKEIVIAVPVAPE-DA 166 (220)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEEeCCcchhHHHHHHHHHHHhcCCceEEEEcccCCH-HH
Confidence 0 1111111 112222 126899999999999999999999999999999999999988776 56
Q ss_pred HHHHHhcCCcEEEeec---HHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC
Q psy1963 182 RANLKQLGYTLHSLFT---LSSVMDILYKANKIKVDTVEDVKKYLCNNQVL 229 (250)
Q Consensus 182 ~~~l~~~g~~v~sl~~---~~~l~~~~~~~~~i~~~~~~~v~~~l~~~~~~ 229 (250)
.+.|+..+..++|+.. |..+.++|.++.++| +++|.++|..+...
T Consensus 167 ~~~l~s~~D~vvc~~~P~~F~AVg~~Y~dF~q~s---deEV~~lL~~a~~~ 214 (220)
T COG1926 167 AAELESEADEVVCLYMPAPFEAVGEFYRDFRQVS---DEEVRALLRRANAP 214 (220)
T ss_pred HHHHHhhcCeEEEEcCCccHHHHHHHHHHHhhcC---HHHHHHHHHhccCC
Confidence 7788888999999986 777899999999999 88999999877543
No 27
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=99.61 E-value=1.9e-14 Score=120.01 Aligned_cols=118 Identities=17% Similarity=0.257 Sum_probs=85.6
Q ss_pred cCCHHHHHHHHHHHHHHHhhc-CCCccEEEecCCCCHHHHHHHHHHcCC---CEE--EEeeccCCcCccccccceeecCC
Q psy1963 44 ISYPKLMDYLSTIINDYLNIN-KISARTVCGVPYTALPIATAVSVKYNI---PML--IRRKDVKTYGTKKLIEGVYEKGD 117 (250)
Q Consensus 44 ~~~p~~~~~l~~~la~~i~~~-~~~~d~Ivgv~~~Gi~~a~~lA~~l~i---p~~--~~rk~~k~~g~~~~~~~~~~~~~ 117 (250)
++.++ .+...+.||..+.+. ....++|+|+..||+++|..+++.+++ |+. ++|.. +|+..+..++..
T Consensus 12 is~~~-I~~~i~~lA~~I~~~~~~~~~vivgi~~Gg~~fa~~L~~~L~~~~~~~~i~fi~~~--sy~~~~~~~g~~---- 84 (189)
T PLN02238 12 WTAED-ISARVAELAAQIASDYAGKSPVVLGVATGAFMFLADLVRAIQPLPRGLTVDFIRAS--SYGGGTESSGVA---- 84 (189)
T ss_pred cCHHH-HHHHHHHHHHHHHHHcCCCCcEEEEEccCCHHHHHHHHHHhCccCCCeEEEEEEee--ecCCCccccCce----
Confidence 34444 444445577777664 225689999999999999999999998 753 45543 343321111110
Q ss_pred cccccccccccceEe---ccccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEEEeCCc
Q psy1963 118 KRKDVKTYGTKKLIE---GVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQ 179 (250)
Q Consensus 118 ~~~~~~~~~~~~~i~---g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~~ 179 (250)
.... ....+|++||||||++|||.|+.++++.|++.|++.+.++|++++..
T Consensus 85 -----------~i~~~~~~~~v~gk~VliVDDIidTG~Tl~~~~~~l~~~g~~~v~~avL~dK~~ 138 (189)
T PLN02238 85 -----------KVSGADLKIDVKGKHVLLVEDIVDTGNTLSALVAHLEAKGAASVSVCALLDKRA 138 (189)
T ss_pred -----------eEecCCCCCCCCCCEEEEEecccchHHHHHHHHHHHHhCCCCEEEEEEEEECCc
Confidence 1111 12368999999999999999999999999999999999999999983
No 28
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.60 E-value=3.4e-14 Score=125.68 Aligned_cols=154 Identities=14% Similarity=0.077 Sum_probs=106.6
Q ss_pred HHHHHHHHHHCCceeeCCccccCccccCeEeecccccCCHHHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHHHHH
Q psy1963 8 LNHLCLQLFDIDALKFGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSV 87 (250)
Q Consensus 8 ~~~~~~~l~~~~~~~~g~f~l~sG~~s~~y~d~~~~~~~p~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~lA~ 87 (250)
.+-+++.|...+ -+.=.+.++|.+...| ++.... +-+ .+..+++.+.. ..+..+|+|++.||+++|..+|.
T Consensus 104 ak~~a~ll~~~~-d~vitvD~H~~~~~~~-f~~~~~--~l~----a~~~la~~i~~-~~~~~vvv~pd~Ga~~~a~~lA~ 174 (285)
T PRK00934 104 ARAIAKIISAYY-DRIITINIHEPSILEF-FPIPFI--NLD----AAPLIAEYIGD-KLDDPLVLAPDKGALELAKEAAE 174 (285)
T ss_pred HHHHHHHHHHhc-CEEEEEcCChHHHcCc-CCCcEe--Eee----cHHHHHHHHHh-cCCCCEEEEeCCchHHHHHHHHH
Confidence 355666666655 3333466666665444 354421 222 24555555533 22345899999999999999999
Q ss_pred HcCCCEEEEeeccCCcCccccccceeecCCcccccccccccceEeccccCCCEEEEEeccccccHHHHHHHHHHHhCCCe
Q psy1963 88 KYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIV 167 (250)
Q Consensus 88 ~l~ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~ 167 (250)
.+|+|+.+.+|.+...+.. . ........+|++|+||||+++||+|+.++++.|+++||+
T Consensus 175 ~l~~~~~~i~k~r~~~~~~-----~----------------~~~~~~~v~Gk~VlIVDDIi~TG~Tl~~aa~~Lk~~GA~ 233 (285)
T PRK00934 175 ILGCEYDYLEKTRISPTEV-----E----------------IAPKNLDVKGKDVLIVDDIISTGGTMATAIKILKEQGAK 233 (285)
T ss_pred HhCCCEEEEEEEecCCCeE-----E----------------EeccccccCCCEEEEEcCccccHHHHHHHHHHHHHCCCC
Confidence 9999999988864321111 0 001112358999999999999999999999999999999
Q ss_pred EEEEEEEEeCC-ccHHHHHHhcCCc
Q psy1963 168 VTDVLTIVDRE-QGGRANLKQLGYT 191 (250)
Q Consensus 168 vv~~~vlvd~~-~~~~~~l~~~g~~ 191 (250)
.+.+++++... .++.+++.+.|+.
T Consensus 234 ~V~~~~~H~i~~~~a~~~l~~~~i~ 258 (285)
T PRK00934 234 KVYVACVHPVLVGDAILKLYNAGVD 258 (285)
T ss_pred EEEEEEEeeccCcHHHHHHHhCCCC
Confidence 99999988765 5677888776654
No 29
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=99.60 E-value=3.6e-14 Score=126.29 Aligned_cols=155 Identities=13% Similarity=0.151 Sum_probs=105.0
Q ss_pred HHHHHHHHHHCCceeeCCccccCc---cccCeEeecccccCCHHHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHH
Q psy1963 8 LNHLCLQLFDIDALKFGDFVTKVG---IKTPVYLDLRGIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATA 84 (250)
Q Consensus 8 ~~~~~~~l~~~~~~~~g~f~l~sG---~~s~~y~d~~~~~~~p~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~ 84 (250)
.+.+++.| +.|+-+.=-+.++|. .... |++.. ..+......+++ .+.+. .+.++|+++..||..+|..
T Consensus 107 ak~vA~ll-~~~~d~vit~DlH~~~~~~~~~-~f~ip--~~nl~~~~~la~----~l~~~-~~~~vVVsPd~g~~~~a~~ 177 (301)
T PRK07199 107 QRHFARLL-SGSFDRLVTVDPHLHRYPSLSE-VYPIP--AVVLSAAPAIAA----WIRAH-VPRPLLIGPDEESEQWVAA 177 (301)
T ss_pred HHHHHHHH-HhhcCeEEEEeccchhhHHhcC-cccCC--ccccchHHHHHH----HHHhc-CCCcEEEEeCCChHHHHHH
Confidence 34566655 456544444666652 2222 33433 123333333343 33322 1346899999999999999
Q ss_pred HHHHcCCCEEEEeeccCCcCccccccceeecCCcccccccccccceEeccccCCCEEEEEeccccccHHHHHHHHHHHhC
Q psy1963 85 VSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSV 164 (250)
Q Consensus 85 lA~~l~ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~ 164 (250)
+|..+|+|+.+.+|.++..+.. . .....+...+|++|+||||++|||+|+.++++.|+++
T Consensus 178 la~~l~~~~~~~~K~R~~~~~~-----~---------------~~~~~~~~v~Gr~vIIVDDIidTG~Tl~~aa~~Lk~~ 237 (301)
T PRK07199 178 VAERAGAPHAVLRKTRHGDRDV-----E---------------ISLPDAAPWAGRTPVLVDDIVSTGRTLIEAARQLRAA 237 (301)
T ss_pred HHHHhCCCEEEEEEEecCCCeE-----E---------------EEeccCcccCCCEEEEEecccCcHHHHHHHHHHHHHC
Confidence 9999999999988865322111 0 0122233458999999999999999999999999999
Q ss_pred CCeEEEEEEEEeCC-ccHHHHHHhcCCc
Q psy1963 165 GIVVTDVLTIVDRE-QGGRANLKQLGYT 191 (250)
Q Consensus 165 Ga~vv~~~vlvd~~-~~~~~~l~~~g~~ 191 (250)
||+.+.+++.+... .++.++|.+.|+.
T Consensus 238 GA~~V~~~~tHgvfs~~a~~~l~~~~i~ 265 (301)
T PRK07199 238 GAASPDCVVVHALFAGDAYSALAAAGIA 265 (301)
T ss_pred CCcEEEEEEEeeeCChHHHHHHHhCCCC
Confidence 99999999988875 4667788766654
No 30
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.60 E-value=2.8e-14 Score=127.98 Aligned_cols=158 Identities=14% Similarity=0.104 Sum_probs=111.6
Q ss_pred HHHHHHHHHHCCceeeCCccccCccccCeEeecccccCCHHHHHHHHHHHHHHHhhcC--CCccEEEecCCCCHHHHHHH
Q psy1963 8 LNHLCLQLFDIDALKFGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNINK--ISARTVCGVPYTALPIATAV 85 (250)
Q Consensus 8 ~~~~~~~l~~~~~~~~g~f~l~sG~~s~~y~d~~~~~~~p~~~~~l~~~la~~i~~~~--~~~d~Ivgv~~~Gi~~a~~l 85 (250)
.+-+++.|...|+-+.=.+.+++.+...|| +.. -.--.....+++++.+.+ .+..+|+++..||+.+|..+
T Consensus 111 ak~~a~ll~~~g~d~vit~D~H~~~~~~~f-~~p------~~~l~~~p~l~~~i~~~~~~~~~~vvVsPd~G~~~~A~~l 183 (320)
T PRK02269 111 SKLVANMLEVAGVDRLLTVDLHAAQIQGFF-DIP------VDHLMGAPLIADYFDRRGLVGDDVVVVSPDHGGVTRARKL 183 (320)
T ss_pred HHHHHHHHhhcCCCEEEEECCChHHHhccc-cCC------chhhhhHHHHHHHHHHhCCCCCCcEEEEECccHHHHHHHH
Confidence 466778777778777666777776655554 432 111133445556665432 13458999999999999999
Q ss_pred HHHcCCCEEEEeeccCCcCccccccceeecCCcccccccccccceEeccccCCCEEEEEeccccccHHHHHHHHHHHhCC
Q psy1963 86 SVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVG 165 (250)
Q Consensus 86 A~~l~ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~G 165 (250)
|..+|+|+.+.+|.+.. +.... . ....+.|. .+|++||||||++|||+|+.++++.|+++|
T Consensus 184 A~~lg~~~~~~~k~r~~-~~~~~-~----------------~~~~~~gd-v~Gr~viIVDDIidTG~Tl~~aa~~Lk~~G 244 (320)
T PRK02269 184 AQFLKTPIAIIDKRRSV-DKMNT-S----------------EVMNIIGN-VKGKKCILIDDMIDTAGTICHAADALAEAG 244 (320)
T ss_pred HHHhCCCEEEEEecccC-CCCce-e----------------EEEEeccc-cCCCEEEEEeeecCcHHHHHHHHHHHHHCC
Confidence 99999999988875432 11100 0 00223344 489999999999999999999999999999
Q ss_pred CeEEEEEEEEeCC-ccHHHHHHhcCCc
Q psy1963 166 IVVTDVLTIVDRE-QGGRANLKQLGYT 191 (250)
Q Consensus 166 a~vv~~~vlvd~~-~~~~~~l~~~g~~ 191 (250)
|+.+.+++.+... .++.++|.+.|+.
T Consensus 245 A~~V~~~~tHglf~~~a~~~l~~~~i~ 271 (320)
T PRK02269 245 ATEVYASCTHPVLSGPALDNIQKSAIE 271 (320)
T ss_pred CCEEEEEEECcccCchHHHHHHhCCCC
Confidence 9999999988876 4567777665543
No 31
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=99.59 E-value=5e-14 Score=125.97 Aligned_cols=158 Identities=15% Similarity=0.114 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHCCceeeCCccccCccccCeEeecccccCCHHHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHHHH
Q psy1963 7 KLNHLCLQLFDIDALKFGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVS 86 (250)
Q Consensus 7 ~~~~~~~~l~~~~~~~~g~f~l~sG~~s~~y~d~~~~~~~p~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~lA 86 (250)
..+-+++.|...|+-++..|.++|.+...+| +.. ..+......+++.+.+.. .+.++|+|++.||+++|..+|
T Consensus 106 s~~~~a~ll~~~g~d~vit~DlHs~~~~~~f-~ip--~~~l~a~~~l~~~i~~~~----~~~~viv~pd~g~~~~A~~lA 178 (308)
T TIGR01251 106 SAKLVANLLETAGADRVLTVDLHSPQIQGFF-DVP--VDNLYASPVLAEYLKKKI----LDNPVVVSPDAGGVERAKKVA 178 (308)
T ss_pred hHHHHHHHHHHcCCCEEEEecCChHHhcCcC-CCc--eecccCHHHHHHHHHhhC----CCCCEEEEECCchHHHHHHHH
Confidence 3567888888889999999999887776665 432 223333333444443332 235799999999999999999
Q ss_pred HHcCCCEEEEeeccCCcCccccccceeecCCcccccccccccceEeccccCCCEEEEEeccccccHHHHHHHHHHHhCCC
Q psy1963 87 VKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGI 166 (250)
Q Consensus 87 ~~l~ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga 166 (250)
..+|+|+.+.+|.+.. +.. ... .....+. .+|++|+||||+++||+|+.++++.|++.|+
T Consensus 179 ~~Lg~~~~~i~k~r~~-~~~-----~~~-------------~~~~~~~-v~g~~vliVDDii~tG~Tl~~a~~~l~~~ga 238 (308)
T TIGR01251 179 DALGCPLAIIDKRRIS-ATN-----EVE-------------VMNLVGD-VEGKDVVIVDDIIDTGGTIAKAAEILKSAGA 238 (308)
T ss_pred HHhCCCEEEEEEEecC-CCC-----EEE-------------EEecccc-cCCCEEEEEccccCCHHHHHHHHHHHHhcCC
Confidence 9999999988886431 111 000 0112232 4899999999999999999999999999999
Q ss_pred eEEEEEEEEeCC-ccHHHHHHhcCCc
Q psy1963 167 VVTDVLTIVDRE-QGGRANLKQLGYT 191 (250)
Q Consensus 167 ~vv~~~vlvd~~-~~~~~~l~~~g~~ 191 (250)
+.+.+++.+... .++.+++.+.|+.
T Consensus 239 ~~v~~~~th~v~~~~a~~~l~~~~~~ 264 (308)
T TIGR01251 239 KRVIAAATHGVFSGPAIERIANAGVE 264 (308)
T ss_pred CEEEEEEEeeecCcHHHHHHHhCCCC
Confidence 999888877644 4567777776654
No 32
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=99.57 E-value=5.6e-14 Score=123.85 Aligned_cols=153 Identities=14% Similarity=0.128 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHCCceeeCCccccCccccCeEeecccccCCHHHHHHHHHHHHHHHhhcC-CCccEEEecCCCCHHHHHHH
Q psy1963 7 KLNHLCLQLFDIDALKFGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNINK-ISARTVCGVPYTALPIATAV 85 (250)
Q Consensus 7 ~~~~~~~~l~~~~~~~~g~f~l~sG~~s~~y~d~~~~~~~p~~~~~l~~~la~~i~~~~-~~~d~Ivgv~~~Gi~~a~~l 85 (250)
..+.+++.|...|+-+.=.+.|++.+...|| |... .+-.. ...+++.+.+.. .+-.+|+++..||...|..+
T Consensus 109 saklvA~lL~~aG~drv~TvDlH~~qiqgfF-dipv--dnl~a----~p~l~~~~~~~~~~~d~vVVSPD~Ggv~RAr~~ 181 (314)
T COG0462 109 SAKLVANLLETAGADRVLTVDLHAPQIQGFF-DIPV--DNLYA----APLLAEYIREKYDLDDPVVVSPDKGGVKRARAL 181 (314)
T ss_pred eHHHHHHHHHHcCCCeEEEEcCCchhhcccC-CCcc--ccccc----hHHHHHHHHHhcCCCCcEEECCCccHHHHHHHH
Confidence 3567888888889998888999988877765 6531 12222 223344444431 11258999999999999999
Q ss_pred HHHcCCCEEEEeeccC-CcCccccccceeecCCcccccccccccceEeccccCCCEEEEEeccccccHHHHHHHHHHHhC
Q psy1963 86 SVKYNIPMLIRRKDVK-TYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSV 164 (250)
Q Consensus 86 A~~l~ip~~~~rk~~k-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~ 164 (250)
|..||.|+.+..|++. ..... +...+.|. .+||+|+||||+++||+|+..|+++|++.
T Consensus 182 A~~L~~~~a~i~K~R~~~~~~v--------------------~~~~~~gd-V~gk~~iiVDDiIdTgGTi~~Aa~~Lk~~ 240 (314)
T COG0462 182 ADRLGAPLAIIDKRRDSSPNVV--------------------EVMNLIGD-VEGKDVVIVDDIIDTGGTIAKAAKALKER 240 (314)
T ss_pred HHHhCCCEEEEEEeecCCCCeE--------------------EEeecccc-cCCCEEEEEeccccccHHHHHHHHHHHHC
Confidence 9999999999888752 22211 01233344 58999999999999999999999999999
Q ss_pred CCeEEEEEEEEeCCc-cHHHHHHh
Q psy1963 165 GIVVTDVLTIVDREQ-GGRANLKQ 187 (250)
Q Consensus 165 Ga~vv~~~vlvd~~~-~~~~~l~~ 187 (250)
||+.+.+++.+.... .+.+++++
T Consensus 241 GAk~V~a~~tH~vfs~~a~~~l~~ 264 (314)
T COG0462 241 GAKKVYAAATHGVFSGAALERLEA 264 (314)
T ss_pred CCCeEEEEEEchhhChHHHHHHhc
Confidence 999999988877763 45666654
No 33
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=99.56 E-value=5.2e-14 Score=116.65 Aligned_cols=113 Identities=12% Similarity=0.139 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHhhc-CCCccEEEecCCCCHHHHHHHHHHcCCCEE--EEeeccCCcCccccccceeecCCccccccccc
Q psy1963 50 MDYLSTIINDYLNIN-KISARTVCGVPYTALPIATAVSVKYNIPML--IRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYG 126 (250)
Q Consensus 50 ~~~l~~~la~~i~~~-~~~~d~Ivgv~~~Gi~~a~~lA~~l~ip~~--~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~ 126 (250)
+....+.||..+.+. ..+.++|+|+..+|+++|..+|..+++|+. +.++.... +.. .....
T Consensus 22 i~~~i~~la~~i~~~~~~~~~viV~i~~gg~~~A~~La~~l~~~~~~~~l~~~~~~-~~~--~~~~~------------- 85 (181)
T PRK09162 22 VEAAIDRMADEITADLADENPLVLCVMGGGLVFTGQLLPRLDFPLEFDYLHATRYR-NET--TGGEL------------- 85 (181)
T ss_pred HHHHHHHHHHHHHHHcCCCCeEEEEECCCcHHHHHHHHHHcCCCcccCEEEEEecC-CCc--cCCce-------------
Confidence 444455566666543 234579999999999999999999999863 33332111 111 00000
Q ss_pred ccceEeccccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEEEeCC
Q psy1963 127 TKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDRE 178 (250)
Q Consensus 127 ~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~ 178 (250)
+.........+|++|||||||+|||+|+.++++.|+++|++.+.++|++++.
T Consensus 86 ~~~~~~~~~v~gk~VLIVDDIidTG~Tl~~~~~~Lk~~Ga~~V~~avL~~k~ 137 (181)
T PRK09162 86 VWKVKPRESLKGRTVLVVDDILDEGHTLAAIRDRCLEMGAAEVYSAVLVDKT 137 (181)
T ss_pred eEecCCCCCCCCCEEEEEccccCcHHHHHHHHHHHHhCCCCEEEEEEEEEcC
Confidence 0010011235899999999999999999999999999999999999999986
No 34
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.56 E-value=7.1e-14 Score=124.90 Aligned_cols=156 Identities=13% Similarity=0.130 Sum_probs=110.8
Q ss_pred HHHHHHHHHHCCceeeCCccccCccccCeEeecccccCCHHHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHHHHH
Q psy1963 8 LNHLCLQLFDIDALKFGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSV 87 (250)
Q Consensus 8 ~~~~~~~l~~~~~~~~g~f~l~sG~~s~~y~d~~~~~~~p~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~lA~ 87 (250)
.+-+++.|...|+-+.=.+.++|.....|| +... .+- .....+++++.+.+.+..+|+|+..||+.+|..+|.
T Consensus 106 ak~~a~lL~~~g~d~vitvD~H~~~~~~~f-~~p~--~~l----~~~~~l~~~i~~~~~~~~vvv~pd~Gg~~~A~~la~ 178 (309)
T PRK01259 106 AKLVANLLETAGADRVLTMDLHADQIQGFF-DIPV--DNL----YGSPILLEDIKQKNLENLVVVSPDVGGVVRARALAK 178 (309)
T ss_pred HHHHHHHHhhcCCCEEEEEcCChHHHcCcC-CCCc--eee----eecHHHHHHHHhcCCCCcEEEEECCCcHHHHHHHHH
Confidence 466778777778766666777777666554 4321 111 122345555554444567999999999999999999
Q ss_pred HcCCCEEEEeeccCCcCccccccceeecCCcccccccccccceEeccccCCCEEEEEeccccccHHHHHHHHHHHhCCCe
Q psy1963 88 KYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIV 167 (250)
Q Consensus 88 ~l~ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~ 167 (250)
.+|+|+.+.+|.++..+.. .. ..+.+. .+|++|+||||+++||+|+.++++.|++.|++
T Consensus 179 ~Lg~~~~~~~k~r~~~~~~----~~----------------~~~~~~-~~g~~vliVDDii~TG~T~~~a~~~l~~~Ga~ 237 (309)
T PRK01259 179 RLDADLAIIDKRRPRANVS----EV----------------MNIIGD-VEGRDCILVDDMIDTAGTLCKAAEALKERGAK 237 (309)
T ss_pred HhCCCEEEEEeecccceeE----EE----------------Eeeccc-CCCCEEEEEecccCcHHHHHHHHHHHHccCCC
Confidence 9999999988765332211 00 122233 58999999999999999999999999999999
Q ss_pred EEEEEEEEeCC-ccHHHHHHhcCCc
Q psy1963 168 VTDVLTIVDRE-QGGRANLKQLGYT 191 (250)
Q Consensus 168 vv~~~vlvd~~-~~~~~~l~~~g~~ 191 (250)
.+.+++.+... .++.+++.+.++.
T Consensus 238 ~v~~~~tH~i~~~~a~~~l~~~~~~ 262 (309)
T PRK01259 238 SVYAYATHPVLSGGAIERIENSVID 262 (309)
T ss_pred EEEEEEEeeeCChHHHHHHhcCCCC
Confidence 99999876665 4566777654443
No 35
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=99.55 E-value=1.7e-13 Score=111.98 Aligned_cols=116 Identities=16% Similarity=0.197 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHhhc-CCCccEEEecCCCCHHHHHHHHHHcCCCEE--EEeeccCCcCccccccceeecCCcccccccc
Q psy1963 49 LMDYLSTIINDYLNIN-KISARTVCGVPYTALPIATAVSVKYNIPML--IRRKDVKTYGTKKLIEGVYEKGDKRKDVKTY 125 (250)
Q Consensus 49 ~~~~l~~~la~~i~~~-~~~~d~Ivgv~~~Gi~~a~~lA~~l~ip~~--~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~ 125 (250)
-....+..||..+.+. ..+.++|+|+..||+++|..+++.+++|.. +.+-. +|.......+.. .+
T Consensus 7 ~i~~~i~~lA~~I~~~~~~~~~vvv~i~~GG~~~a~~l~~~L~~~~~v~~i~~~--~Y~~~~~~~~~~----------~~ 74 (166)
T TIGR01203 7 QIKARIAELAKQITEDYAGKPLVLLCVLKGSFPFFADLIRYIAVPVQVDFMAVS--SYGNGMQSSGDV----------KI 74 (166)
T ss_pred HHHHHHHHHHHHHHHHcCCCCeEEEEEccCCHHHHHHHHHhcCCCceeeEEEEe--eccCCCcccCce----------EE
Confidence 3455566777777654 225689999999999999999999998843 23221 121110000000 00
Q ss_pred cccceEeccccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEEEeCCc
Q psy1963 126 GTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQ 179 (250)
Q Consensus 126 ~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~~ 179 (250)
.... ....+|++||||||+++||.|+.++++.|++.|++.+.+++++++..
T Consensus 75 --~~~~-~~~~~gk~vlivDDii~TG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~ 125 (166)
T TIGR01203 75 --LKDL-DLSIKGKDVLIVEDIVDTGLTLQYLLDLLKARKPKSLKIVTLLDKPS 125 (166)
T ss_pred --ecCC-CCCCCCCEEEEEeeeeCcHHHHHHHHHHHHHCCCCEEEEEEEEecCc
Confidence 0001 12357999999999999999999999999999999999999999963
No 36
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=99.55 E-value=2.1e-13 Score=121.51 Aligned_cols=157 Identities=13% Similarity=0.087 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHCCceeeCCccccCccccCeEeecc--cccCCHHHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHH
Q psy1963 7 KLNHLCLQLFDIDALKFGDFVTKVGIKTPVYLDLR--GIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATA 84 (250)
Q Consensus 7 ~~~~~~~~l~~~~~~~~g~f~l~sG~~s~~y~d~~--~~~~~p~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~ 84 (250)
..+.+++.|...|+-++..+.++|++.+.|| |.. .+...|. +++.+.+.... . +.-+|+++..||.++|..
T Consensus 96 sak~va~lL~~~g~d~vi~vDlHs~~i~~~F-~ip~~~l~~~~~----~~~~i~~~~~~-~-~~~vvVspd~gg~~~a~~ 168 (302)
T PLN02369 96 AAKLVANLITEAGADRVLACDLHSGQSMGYF-DIPVDHVYGQPV----ILDYLASKTIS-S-PDLVVVSPDVGGVARARA 168 (302)
T ss_pred hHHHHHHHHHhcCCCEEEEEECCchHHhhcc-CCceecccchHH----HHHHHHHhCCC-C-CceEEEEECcChHHHHHH
Confidence 4567888888889999999999999988877 642 2233333 33333332111 1 123899999999999999
Q ss_pred HHHHc-CCCEEEEeeccCCcCccccccceeecCCcccccccccccceEeccccCCCEEEEEeccccccHHHHHHHHHHHh
Q psy1963 85 VSVKY-NIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKS 163 (250)
Q Consensus 85 lA~~l-~ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~ 163 (250)
+|..+ +.|+.+.+|.++..+.. .. ..+.+. .+|++|+||||+++||+|+.++++.|++
T Consensus 169 ~a~~l~~~~~~~l~k~R~~~~~~----~~----------------~~~~~~-v~g~~viivDDii~TG~Tl~~a~~~l~~ 227 (302)
T PLN02369 169 FAKKLSDAPLAIVDKRRQGHNVA----EV----------------MNLIGD-VKGKVAIMVDDMIDTAGTITKGAALLHQ 227 (302)
T ss_pred HHHHcCCCCEEEEEEecCCccee----ee----------------EecCCC-CCCCEEEEEcCcccchHHHHHHHHHHHh
Confidence 99999 79999988875432211 00 112333 4799999999999999999999999999
Q ss_pred CCCeEEEEEEEEeCC-ccHHHHHHhcCCc
Q psy1963 164 VGIVVTDVLTIVDRE-QGGRANLKQLGYT 191 (250)
Q Consensus 164 ~Ga~vv~~~vlvd~~-~~~~~~l~~~g~~ 191 (250)
.|++.+.+++.+... .++.++|.+.++.
T Consensus 228 ~Ga~~v~~~~tH~v~~~~a~~~l~~~~~~ 256 (302)
T PLN02369 228 EGAREVYACATHAVFSPPAIERLSSGLFQ 256 (302)
T ss_pred CCCCEEEEEEEeeeeCHHHHHHHHhCCCC
Confidence 999998888855443 4567777664443
No 37
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=99.54 E-value=5e-14 Score=132.29 Aligned_cols=148 Identities=13% Similarity=0.190 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHHHHHHcCCCEE--EEeeccCCcCccccccceeecCCcccccccc
Q psy1963 48 KLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSVKYNIPML--IRRKDVKTYGTKKLIEGVYEKGDKRKDVKTY 125 (250)
Q Consensus 48 ~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~lA~~l~ip~~--~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~ 125 (250)
+.+..+++.|++.+.. ++|+|++||..|.++|..+|+.+|+|+. ++|.+ ..+.......... .....-
T Consensus 269 ~~R~~lg~~La~~~~~---~~D~VvpVPnqa~~lA~~la~~lgip~~~~lvk~~--~~~rt~~~~~q~~-----R~~~vr 338 (484)
T PRK07272 269 TARKRMGKRLAQEFPH---DADIVIGVPNSSLSAASGYAEESGLPYEMGLVKNQ--YVARTFIQPTQEL-----REQGVR 338 (484)
T ss_pred HHHHHHHHHHHhhcCC---CCCEEEEecHHHHHHHHHHHHHHCCCcccCeEEEc--cCCccccCCCHHH-----HHHHHh
Confidence 3456788888876543 4799999999999999999999999974 34432 1221100000000 000000
Q ss_pred cccceEeccccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEE-----------EeCCccH--------HHHH-
Q psy1963 126 GTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTI-----------VDREQGG--------RANL- 185 (250)
Q Consensus 126 ~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vl-----------vd~~~~~--------~~~l- 185 (250)
..+.... ...+||+||||||++|||+|+.++++.|+++||+.+.+++. +|+.+.. .+.+
T Consensus 339 ~~f~~~~-~~~~gk~vllVDDvittG~T~~~~~~~L~~~Ga~~v~~~~~~p~~~~~c~ygid~~~~~~lia~~~~~~ei~ 417 (484)
T PRK07272 339 MKLSAVS-GVVKGKRVVMVDDSIVRGTTSRRIVQLLKEAGAKEVHVAIASPELKYPCFYGIDIQTRRELISANHSVEEIC 417 (484)
T ss_pred hCccccc-cccCCCEEEEEccccCchHHHHHHHHHHHhcCCcEEEEEEeCCccccChhhhccCcCHHHHHhcCCCHHHHH
Confidence 0011122 23589999999999999999999999999999999999999 7776322 2333
Q ss_pred HhcCCcEEEeecHHHHHHHHH
Q psy1963 186 KQLGYTLHSLFTLSSVMDILY 206 (250)
Q Consensus 186 ~~~g~~v~sl~~~~~l~~~~~ 206 (250)
+..|++..++++++++.+.+.
T Consensus 418 ~~~~~dsl~~~~~~~l~~~~~ 438 (484)
T PRK07272 418 DIIGADSLTYLSVDGLIESIG 438 (484)
T ss_pred HHhCCCEEEEecHHHHHHHhC
Confidence 358999999999999999984
No 38
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.53 E-value=1.5e-13 Score=123.18 Aligned_cols=156 Identities=14% Similarity=0.101 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHCCceeeCCccccCccccCeEeecc--cccCCHHHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHH
Q psy1963 7 KLNHLCLQLFDIDALKFGDFVTKVGIKTPVYLDLR--GIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATA 84 (250)
Q Consensus 7 ~~~~~~~~l~~~~~~~~g~f~l~sG~~s~~y~d~~--~~~~~p~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~ 84 (250)
..+.+++.|...|+-++=.+.+++.+...|| |.. .+...|. +++.+.+.+ ..+.-+|+++..||..+|..
T Consensus 112 sak~va~ll~~~g~d~vitvD~H~~~~~~~f-~~p~~~l~~~~~----l~~~i~~~~---~~~~~vVVsPD~Ga~~rA~~ 183 (319)
T PRK04923 112 TAKVAAKMISAMGADRVLTVDLHADQIQGFF-DVPVDNVYASPL----LLADIWRAY---GTDNLIVVSPDVGGVVRARA 183 (319)
T ss_pred cHHHHHHHHHhcCCCEEEEEeCChHHHHhhc-CCCceeeeChHH----HHHHHHHhc---CCCCCEEEEECCchHHHHHH
Confidence 3567788787778877777888887776665 533 1222222 333333222 12335899999999999999
Q ss_pred HHHHcC-CCEEEEeeccCCcCccccccceeecCCcccccccccccceEeccccCCCEEEEEeccccccHHHHHHHHHHHh
Q psy1963 85 VSVKYN-IPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKS 163 (250)
Q Consensus 85 lA~~l~-ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~ 163 (250)
+|..++ .|+++..|.+...+.. . .....|. .+|++|+||||+++||+|+.++++.|++
T Consensus 184 lA~~L~~~~~~~~~K~R~~~~~~----~----------------~~~~~gd-v~Gr~viIVDDIidTG~Tl~~aa~~Lk~ 242 (319)
T PRK04923 184 VAKRLDDADLAIIDKRRPRANVA----T----------------VMNIIGD-VQGKTCVLVDDLVDTAGTLCAAAAALKQ 242 (319)
T ss_pred HHHHcCCCCEEEeccccCCCCce----E----------------EEecccC-CCCCEEEEEecccCchHHHHHHHHHHHH
Confidence 999998 8999988864321111 0 0122344 5899999999999999999999999999
Q ss_pred CCCeEEEEEEEEeCC-ccHHHHHHhcCCc
Q psy1963 164 VGIVVTDVLTIVDRE-QGGRANLKQLGYT 191 (250)
Q Consensus 164 ~Ga~vv~~~vlvd~~-~~~~~~l~~~g~~ 191 (250)
+||+.+.+++.+... .++.++|.+.|+.
T Consensus 243 ~GA~~V~~~~THgvfs~~a~~~l~~s~i~ 271 (319)
T PRK04923 243 RGALKVVAYITHPVLSGPAVDNINNSQLD 271 (319)
T ss_pred CCCCEEEEEEECcccCchHHHHHhhCCCC
Confidence 999999999888776 4566777655543
No 39
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=99.53 E-value=6.7e-14 Score=130.70 Aligned_cols=148 Identities=14% Similarity=0.199 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHHHHHHcCCCEE--EEeeccCCcCccccccceeecCCcccccccc
Q psy1963 48 KLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSVKYNIPML--IRRKDVKTYGTKKLIEGVYEKGDKRKDVKTY 125 (250)
Q Consensus 48 ~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~lA~~l~ip~~--~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~ 125 (250)
+....+|+.||+... .++|+|++||.+|+++|..+|+.+|+|+. +.|+. ..+...+...... +.....
T Consensus 257 ~~R~~~g~~La~~~~---~~~D~Vv~VP~sg~~~A~~la~~lgip~~~~l~r~~--~~~r~~i~~~q~~-----R~~~v~ 326 (442)
T TIGR01134 257 KARKRMGEKLARESP---VEADVVIPVPDSGRSAALGFAQASGIPYREGLIKNR--YVGRTFIMPTQEL-----RELSVR 326 (442)
T ss_pred HHHHHHHHHHHHhcC---CCCEEEEEccCCHHHHHHHHHHHhCCCchHHeEEec--cccccccCCCHHH-----HHHHHh
Confidence 567788999987543 36899999999999999999999999985 34432 1222110000000 000000
Q ss_pred cccceEeccccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEE-----------EeCCcc--------HHHHH-
Q psy1963 126 GTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTI-----------VDREQG--------GRANL- 185 (250)
Q Consensus 126 ~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vl-----------vd~~~~--------~~~~l- 185 (250)
.+.....+ ..+||+||||||++|||+|+.+++++|+++|++.+.+.+. +|.... ..+.+
T Consensus 327 ~k~~~~~~-~~~gk~v~lvDD~ittG~T~~~~~~~l~~~ga~~v~~~~~spp~~~pc~yg~d~~~~~el~~~~~~~~~i~ 405 (442)
T TIGR01134 327 LKLNPIRE-VFRGKRVVLVDDSIVRGTTSRQIVKMLRDAGAKEVHVRIASPPIRYPCYYGIDMPTREELIANGRTVEEIA 405 (442)
T ss_pred hhcccccc-cCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEEccCCccCCcccccCCCCHHHHhhcCCCHHHHH
Confidence 00111222 3589999999999999999999999999999999998887 644321 12333
Q ss_pred HhcCCcEEEeecHHHHHHHHH
Q psy1963 186 KQLGYTLHSLFTLSSVMDILY 206 (250)
Q Consensus 186 ~~~g~~v~sl~~~~~l~~~~~ 206 (250)
+..|++..++++++++.+.+.
T Consensus 406 ~~~~~~~l~~~~~~~l~~~~~ 426 (442)
T TIGR01134 406 KEIGADSLAYLSLEGLKEAIG 426 (442)
T ss_pred HHhCCCEEEEecHHHHHHHhc
Confidence 358999999999999988874
No 40
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.51 E-value=5e-13 Score=119.17 Aligned_cols=163 Identities=14% Similarity=0.123 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHCCceeeCCccccCccccCeEeecccccCCHHHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHHHH
Q psy1963 7 KLNHLCLQLFDIDALKFGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVS 86 (250)
Q Consensus 7 ~~~~~~~~l~~~~~~~~g~f~l~sG~~s~~y~d~~~~~~~p~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~lA 86 (250)
..+.+++.|...|+-+.=.+.+++.....|| |... .+-.....+++.+.+.+. .+.-+|+++..||+++|..+|
T Consensus 94 sak~va~lL~~~g~d~vitvD~H~~~~~~~f-~~p~--~~l~~~~~la~~i~~~~~---~~~~vvVspd~Ga~~~a~~la 167 (304)
T PRK03092 94 SARLVADLFKTAGADRIMTVDLHTAQIQGFF-DGPV--DHLFAMPLLADYVRDKYD---LDNVTVVSPDAGRVRVAEQWA 167 (304)
T ss_pred cHHHHHHHHHhcCCCeEEEEecChHHHHhhc-CCCe--eeEechHHHHHHHHHhcC---CCCcEEEEecCchHHHHHHHH
Confidence 3466788777778776666778777766555 5431 122233333444433221 123489999999999999999
Q ss_pred HHcC-CCEEEEeeccCCcCccccccceeecCCcccccccccccceEeccccCCCEEEEEeccccccHHHHHHHHHHHhCC
Q psy1963 87 VKYN-IPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVG 165 (250)
Q Consensus 87 ~~l~-ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~G 165 (250)
..++ .|+.+.+|.+.....+ .. . ...+.+. .+|++|+||||+++||+|+.++++.|++.|
T Consensus 168 ~~L~~~~~~~i~k~R~~~~~~-----~~----------~---~~~~~~d-v~gr~viIVDDIi~TG~Tl~~aa~~Lk~~G 228 (304)
T PRK03092 168 DRLGGAPLAFIHKTRDPTVPN-----QV----------V---ANRVVGD-VEGRTCVLVDDMIDTGGTIAGAVRALKEAG 228 (304)
T ss_pred HHcCCCCEEEEEEEcccCCCC-----ce----------E---EEecCcC-CCCCEEEEEccccCcHHHHHHHHHHHHhcC
Confidence 9999 9999988864211101 00 0 0222333 489999999999999999999999999999
Q ss_pred CeEEEEEEEEeCC-ccHHHHHHhcCCcEEE
Q psy1963 166 IVVTDVLTIVDRE-QGGRANLKQLGYTLHS 194 (250)
Q Consensus 166 a~vv~~~vlvd~~-~~~~~~l~~~g~~v~s 194 (250)
++.+.+++.+... .++.++|.+.|++-+.
T Consensus 229 a~~I~~~~tH~v~~~~a~~~l~~~~~~~i~ 258 (304)
T PRK03092 229 AKDVIIAATHGVLSGPAAERLKNCGAREVV 258 (304)
T ss_pred CCeEEEEEEcccCChHHHHHHHHCCCCEEE
Confidence 9998888866665 3567888776665433
No 41
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.51 E-value=6.5e-13 Score=119.64 Aligned_cols=152 Identities=11% Similarity=0.093 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHCCceeeCCccccCccccCeEeecccccCCHHHHHHHHHHHHHHHhhc-CCCccEEEecCCCCHHHHHHH
Q psy1963 7 KLNHLCLQLFDIDALKFGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNIN-KISARTVCGVPYTALPIATAV 85 (250)
Q Consensus 7 ~~~~~~~~l~~~~~~~~g~f~l~sG~~s~~y~d~~~~~~~p~~~~~l~~~la~~i~~~-~~~~d~Ivgv~~~Gi~~a~~l 85 (250)
..+-+++.|...|+-+.=-+.+++.+...|| +... .+-.... .+++.+.+. +.+.-+|++++.||+.+|..+
T Consensus 114 sak~vA~ll~~~g~d~vit~DlH~~~i~~~F-~ipv--~~l~a~~----~~~~~~~~~~~~~~~vvVsPD~gg~~rA~~l 186 (332)
T PRK00553 114 TSKLVADLLTKAGVTRVTLTDIHSDQTQGFF-DIPV--DILRTYH----VFLSRVLELLGKKDLVVVSPDYGGVKRARLI 186 (332)
T ss_pred cHHHHHHHHHhcCCCEEEEEeCChHHHHhhc-CCCc--ceeechH----HHHHHHHHhcCCCCeEEEEECCCcHHHHHHH
Confidence 3466778777778877767888887766655 6431 1111122 233333221 222348999999999999999
Q ss_pred HHHcCCCEEEEeeccCCcCccccccceeecCCcccccccccccceEeccccCCCEEEEEeccccccHHHHHHHHHHHhCC
Q psy1963 86 SVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVG 165 (250)
Q Consensus 86 A~~l~ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~G 165 (250)
|..+|+|+.+.+|.+...+.. +. ..+.|. .+|++|+||||+++||+|+.++++.|+++|
T Consensus 187 A~~lg~~~~vi~K~r~~~~~~----~~----------------~~~~gd-v~Gk~VIIVDDIi~TG~Tl~~aa~~Lk~~G 245 (332)
T PRK00553 187 AESLELPLAIIDKRRPKHNVA----ES----------------INVLGE-VKNKNCLIVDDMIDTGGTVIAAAKLLKKQK 245 (332)
T ss_pred HHHhCCCEEEEEEecCCcceE----ee----------------EEeecc-CCCCEEEEEeccccchHHHHHHHHHHHHcC
Confidence 999999999988865332211 00 112343 589999999999999999999999999999
Q ss_pred CeEEEEEEEEeCC-ccHHHHHH
Q psy1963 166 IVVTDVLTIVDRE-QGGRANLK 186 (250)
Q Consensus 166 a~vv~~~vlvd~~-~~~~~~l~ 186 (250)
|+.+.+++.+... .++.+++.
T Consensus 246 A~~V~~~atHglf~~~a~~~l~ 267 (332)
T PRK00553 246 AKKVCVMATHGLFNKNAIQLFD 267 (332)
T ss_pred CcEEEEEEEeeecCchHHHHHH
Confidence 9999999987765 35566664
No 42
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.50 E-value=5.2e-13 Score=119.87 Aligned_cols=154 Identities=12% Similarity=0.148 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHCCceeeCCccccCccccCeEeecc--cccCCHHHHHHHHHHHHHHHhhcCC--CccEEEecCCCCHHHH
Q psy1963 7 KLNHLCLQLFDIDALKFGDFVTKVGIKTPVYLDLR--GIISYPKLMDYLSTIINDYLNINKI--SARTVCGVPYTALPIA 82 (250)
Q Consensus 7 ~~~~~~~~l~~~~~~~~g~f~l~sG~~s~~y~d~~--~~~~~p~~~~~l~~~la~~i~~~~~--~~d~Ivgv~~~Gi~~a 82 (250)
..+.+++.|-..|+-+.=.+.+++.+...|| +.. .+...| .+++++.+.+. +.-+|+++..||..+|
T Consensus 114 sak~~a~lL~~~g~d~vitvD~H~~~i~~~F-~~p~~nl~~~p--------~~~~~l~~~~~~~~~~vvV~pd~Ga~~~A 184 (323)
T PRK02458 114 TAKLVANMLVKAGVDRVLTLDLHAVQVQGFF-DIPVDNLFTVP--------LFAKHYCKKGLSGSDVVVVSPKNSGIKRA 184 (323)
T ss_pred hHHHHHHHHhhcCCCeEEEEecCcHHhhccc-cCCceEEEEHH--------HHHHHHHHhCCCCCceEEEEECCChHHHH
Confidence 4567788777778777767778777766655 422 122222 23344433221 3348999999999999
Q ss_pred HHHHHHcCCCEEEEeeccCCcCccccccceeecCCcccccccccccceEeccccCCCEEEEEeccccccHHHHHHHHHHH
Q psy1963 83 TAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLK 162 (250)
Q Consensus 83 ~~lA~~l~ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~ 162 (250)
..+|..+++|+.+.++.+.. ... . ...+.|. .+|++|+||||+++||+|+.++++.|+
T Consensus 185 ~~la~~L~~~~~~~~~~r~~-~~~------~--------------~~~i~gd-V~gk~viIVDDIidTG~Tl~~aa~~Lk 242 (323)
T PRK02458 185 RSLAEYLDAPIAIIDYAQDD-SER------E--------------EGYIIGD-VAGKKAILIDDILNTGKTFAEAAKIVE 242 (323)
T ss_pred HHHHHHhCCCEEEEEEecCC-Ccc------e--------------eeccccc-cCCCEEEEEcceeCcHHHHHHHHHHHH
Confidence 99999999999877764321 000 0 0223344 589999999999999999999999999
Q ss_pred hCCCeEEEEEEEEeCC-ccHHHHHHhcCCc
Q psy1963 163 SVGIVVTDVLTIVDRE-QGGRANLKQLGYT 191 (250)
Q Consensus 163 ~~Ga~vv~~~vlvd~~-~~~~~~l~~~g~~ 191 (250)
++||+.+.+++.+.-. .++.+.|.+.|+.
T Consensus 243 ~~GA~~V~~~~tHgif~~~a~~~l~~s~i~ 272 (323)
T PRK02458 243 REGATEIYAVASHGLFAGGAAEVLENAPIK 272 (323)
T ss_pred hCCCCcEEEEEEChhcCchHHHHHhhCCCC
Confidence 9999999998888776 4566777766554
No 43
>KOG1377|consensus
Probab=99.50 E-value=1.3e-14 Score=122.56 Aligned_cols=196 Identities=17% Similarity=0.188 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHHCCceeeCCccccCccccCeEeecccccCCHHHHHHHHHHHHHHHhhcCCCccE--EEecCCCCHH-H
Q psy1963 5 QEKLNHLCLQLFDIDALKFGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNINKISART--VCGVPYTALP-I 81 (250)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~g~f~l~sG~~s~~y~d~~~~~~~p~~~~~l~~~la~~i~~~~~~~d~--Ivgv~~~Gi~-~ 81 (250)
..+.+.+.+..+..-+.++|+|.++||+++|+|+|++.+ ..+..+..++..++..|.+....+|+ +++++++|++ -
T Consensus 33 ~~~~d~~~~~~ll~~~~~~Gpf~l~sk~h~di~~df~~~-~~~k~L~aLA~a~~f~I~edrkffDigntvg~qY~gg~~k 111 (261)
T KOG1377|consen 33 CLAVDLFLERELLQLALRFGPFILKSKTHSDIFFDFSLF-NSGKDLRALAQAYAFLIFEDRKFFDIGNTVGLQYKGGPLK 111 (261)
T ss_pred HHHHHHHHHHHHHHHHHhhCCeEeeccccCceeeccccc-ccHHHHHHHHHHHHHHHHhhhhcccccceeccccccchHH
Confidence 455667788888889999999999999999999999954 48999999999999999887778999 9999999855 4
Q ss_pred HHHHHHHcCCCEE--------EEeeccCCcCccccccceeecCCcccccccccccceEeccccCCCEEEEEeccccccHH
Q psy1963 82 ATAVSVKYNIPML--------IRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSS 153 (250)
Q Consensus 82 a~~lA~~l~ip~~--------~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvitTG~T 153 (250)
+...|...+++.+ +.||..+.|+++ ..+-+.-..+|.+|+.||+.++|.-
T Consensus 112 ia~wadl~n~h~v~g~~i~~g~~rk~~k~~~eg----------------------G~lllAems~kg~L~~~dy~ea~~a 169 (261)
T KOG1377|consen 112 IASWADLVNAHGVPGRGIIKGLNRKLLKDHGEG----------------------GVLLLAELSSKGSLITGDYTEAATA 169 (261)
T ss_pred HHHHHHHHhccCcccchHHHHHhhhccccCCCC----------------------ceEEEEEeccCCceeehhHHHHHHH
Confidence 5666777666644 455555666533 3333444578999999997666666
Q ss_pred HHHHHHHHHhCCCeEEEEEEEEeCC-----cc-----HHHHHH-hcCCcEEEeecHHHHHHHHHHcCCCCHHHHH--HHH
Q psy1963 154 ILETINDLKSVGIVVTDVLTIVDRE-----QG-----GRANLK-QLGYTLHSLFTLSSVMDILYKANKIKVDTVE--DVK 220 (250)
Q Consensus 154 l~~a~~~L~~~Ga~vv~~~vlvd~~-----~~-----~~~~l~-~~g~~v~sl~~~~~l~~~~~~~~~i~~~~~~--~v~ 220 (250)
+.+. .+.-..+.+.+..+..+++ ++ +-+.|. .++.|+.++.+..+.+.+.. +.++++... +++
T Consensus 170 I~ee--~~d~~~G~v~g~~~~ldrq~l~~tpgv~~d~~~d~lgqqy~~p~e~I~~~~~dIiivg--rglt~a~~~~~~~e 245 (261)
T KOG1377|consen 170 IAEE--DIDFVNGFVAGSIVALDRQELIMTPGVELDAAGDNLGQQYRLPVEVIVSLGSDIIIVG--RGLTAASKPVQAIE 245 (261)
T ss_pred HHHh--hhchheeEEeeeeeeccHHhhccCCCCccchhhcchhhhhcCcHHhheecCceEEEEc--CccccccCcHHHHH
Confidence 6655 3444566788888888886 11 123443 57788888887666655553 345556655 888
Q ss_pred HHHHhcC
Q psy1963 221 KYLCNNQ 227 (250)
Q Consensus 221 ~~l~~~~ 227 (250)
.|++.+|
T Consensus 246 ~YRq~~w 252 (261)
T KOG1377|consen 246 RYRQAYW 252 (261)
T ss_pred HHHHHHH
Confidence 8998764
No 44
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=99.50 E-value=2.8e-13 Score=109.61 Aligned_cols=107 Identities=12% Similarity=0.139 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHHHHHHcCCCEE-EEeeccCCcCccccccceeecCCcccccccc
Q psy1963 47 PKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSVKYNIPML-IRRKDVKTYGTKKLIEGVYEKGDKRKDVKTY 125 (250)
Q Consensus 47 p~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~lA~~l~ip~~-~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~ 125 (250)
.+-+...++.|++.+.+.+ ++|+|+|+++||+++|..+++.+++|++ +.+-. .|+.. ..+.
T Consensus 12 ~~~i~~~i~~la~~I~~~~-~~d~vvgv~~GG~~fa~~L~~~L~~~~v~~i~~s--sY~~~--~~~~------------- 73 (156)
T PRK09177 12 WDQLHRDARALAWRLLPAG-QWKGIIAVTRGGLVPAAILARELGIRLVDTVCIS--SYDHD--NQGE------------- 73 (156)
T ss_pred HHHHHHHHHHHHHHHHhhC-CCCEEEEEecCCeehHHHHHHHcCCCceeEEEEE--EECCC--cCCc-------------
Confidence 3445567788888887664 6899999999999999999999999974 22221 22211 0000
Q ss_pred cccceEeccccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEEEeCC
Q psy1963 126 GTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDRE 178 (250)
Q Consensus 126 ~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~ 178 (250)
.....+...+|++||||||+++||.|+.++.+.+++ +.++++.++.
T Consensus 74 --~~~~~~~~~~gk~VLIVDDIiDTG~Tl~~v~~~l~~-----v~~a~l~~K~ 119 (156)
T PRK09177 74 --LKVLKRAEGDGEGFLVVDDLVDTGGTARAVREMYPK-----AHFATVYAKP 119 (156)
T ss_pred --EEEecCCCcCcCEEEEEeeeeCCHHHHHHHHHHHhh-----CCEEEEEECc
Confidence 122333346899999999999999999999999975 4677788776
No 45
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=99.50 E-value=4.5e-13 Score=110.63 Aligned_cols=117 Identities=12% Similarity=0.140 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHHHHHhhcC---CCccEEEecCCCCHHHHHHHHHHcCCCEE--EEeeccCCcCccccccceeecCCccc
Q psy1963 46 YPKLMDYLSTIINDYLNINK---ISARTVCGVPYTALPIATAVSVKYNIPML--IRRKDVKTYGTKKLIEGVYEKGDKRK 120 (250)
Q Consensus 46 ~p~~~~~l~~~la~~i~~~~---~~~d~Ivgv~~~Gi~~a~~lA~~l~ip~~--~~rk~~k~~g~~~~~~~~~~~~~~~~ 120 (250)
+.+-.+...+.||..+.+.. ....+++|+..||+++|..+++.++.|.. +.+.. +|+.+....+..
T Consensus 10 ~~~~i~~~i~~lA~~I~~~~~~~~~~~vvvgI~~Gg~~fa~~L~~~L~~~~~v~~l~~s--sY~~~~~~~~~v------- 80 (178)
T PRK15423 10 PEAEIKARIAELGRQITERYKDSGSDMVLVGLLRGSFMFMADLCREVQVSHEVDFMTAS--SYGSGMSTTRDV------- 80 (178)
T ss_pred CHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCChHHHHHHHHHhCCCcceeEEEEE--EecCCCcccCce-------
Confidence 34444555566666665532 12478999999999999999999999843 44443 344221111110
Q ss_pred ccccccccceEe--ccccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEEEeCCc
Q psy1963 121 DVKTYGTKKLIE--GVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQ 179 (250)
Q Consensus 121 ~~~~~~~~~~i~--g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~~ 179 (250)
.... ....+|++||||||+++||.|+.++.+.+++.|++.+.+++++++..
T Consensus 81 --------~i~~~~~~~v~gk~VLlVDDIiDTG~TL~~l~~~l~~~~~~~v~~avL~~K~~ 133 (178)
T PRK15423 81 --------KILKDLDEDIRGKDVLIVEDIIDSGNTLSKVREILSLREPKSLAICTLLDKPS 133 (178)
T ss_pred --------EEecCCCCCCCCCEEEEEeeecCchHHHHHHHHHHHhCCCCEEEEEEEEECCC
Confidence 1111 12368999999999999999999999999999999999999999984
No 46
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=99.50 E-value=6e-13 Score=121.49 Aligned_cols=163 Identities=14% Similarity=0.077 Sum_probs=110.3
Q ss_pred HHHHHHHHHHCCceeeCCccccCccccCeEeecccccCCHHHHHHHHHHHHHHHhhc--CCCccEEEecCCCCHHHHHHH
Q psy1963 8 LNHLCLQLFDIDALKFGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNIN--KISARTVCGVPYTALPIATAV 85 (250)
Q Consensus 8 ~~~~~~~l~~~~~~~~g~f~l~sG~~s~~y~d~~~~~~~p~~~~~l~~~la~~i~~~--~~~~d~Ivgv~~~Gi~~a~~l 85 (250)
.+-+++.|...|+-+.=.+.+++.+...+| +...+-+-+. ...+++.+.+.+.+. +.+..+|++++.||.++|..+
T Consensus 148 ak~vA~lL~~~G~d~vitvDlHs~~i~~~F-~~~pvdnl~a-~~~l~~~i~~~i~~l~~d~~~~VVVsPD~Gg~~rA~~~ 225 (382)
T PRK06827 148 CALALQELEELGVDNIITFDAHDPRIENAI-PLMGFENLYP-SYQIIKALLKNEKDLEIDKDHLMVISPDTGAMDRAKYY 225 (382)
T ss_pred HHHHHHHHHHcCCCeEEEecCChHHhcccC-CCCCcCCcCc-hHHHHHHHHHhcccccccCCCcEEEEECccchHHHHHH
Confidence 456788777778877777888887777666 4222221111 122334444332211 113568999999999999999
Q ss_pred HHHcCCCEEEEeeccCCcCccccccceeecCCcccccccccccceEeccccCCCEEEEEeccccccHHHHHHHHHHHhCC
Q psy1963 86 SVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVG 165 (250)
Q Consensus 86 A~~l~ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~G 165 (250)
|..+|.|+++.+|++ .++.. ..+. ....+ ....|...+|++||||||+++||+|+.++++.|++.|
T Consensus 226 A~~Lg~~~ai~~K~R-~~~~~--~~g~--------~~~~~---~~~~g~dV~gr~vIIVDDII~TG~Tl~~aa~~Lk~~G 291 (382)
T PRK06827 226 ASVLGVDLGLFYKRR-DYSRV--VNGR--------NPIVA---HEFLGRDVEGKDVLIVDDMIASGGSMIDAAKELKSRG 291 (382)
T ss_pred HHHhCCCEEEEEccc-CCccc--ccCC--------CceEE---EecCCcccCCCEEEEEeCCcCcHHHHHHHHHHHHHcC
Confidence 999999999999874 32211 0000 00000 1122423589999999999999999999999999999
Q ss_pred CeEEEEEEEEeCCccHHHHHH
Q psy1963 166 IVVTDVLTIVDREQGGRANLK 186 (250)
Q Consensus 166 a~vv~~~vlvd~~~~~~~~l~ 186 (250)
|+.+.+++.+.....+.+++.
T Consensus 292 A~~V~~~~tH~vf~~a~~~l~ 312 (382)
T PRK06827 292 AKKIIVAATFGFFTNGLEKFD 312 (382)
T ss_pred CCEEEEEEEeecChHHHHHHH
Confidence 999999998877446776664
No 47
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.49 E-value=1.2e-12 Score=117.66 Aligned_cols=163 Identities=16% Similarity=0.149 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHCCceeeCCccccCccccCeE-eecccccCCHHHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHHH
Q psy1963 7 KLNHLCLQLFDIDALKFGDFVTKVGIKTPVY-LDLRGIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAV 85 (250)
Q Consensus 7 ~~~~~~~~l~~~~~~~~g~f~l~sG~~s~~y-~d~~~~~~~p~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~l 85 (250)
..+-+++.|...|+-+.=.+.+++.+...|| +....+...|.+.+ .+.+...+-.+|++++.||..+|..+
T Consensus 126 sak~vA~lL~~~g~d~vitvDlH~~~~~~fF~ipv~nl~~~~~l~~--------~i~~~~~~~~vvVsPD~gg~~ra~~~ 197 (330)
T PRK02812 126 TAKLVANLITKAGADRVLAMDLHSAQIQGYFDIPCDHVYGSPVLLD--------YLASKNLEDIVVVSPDVGGVARARAF 197 (330)
T ss_pred hHHHHHHHHHhcCCCEEEEEECCchHHcCccCCCceeeeChHHHHH--------HHHhcCCCCeEEEEECCccHHHHHHH
Confidence 3466888887778877777889998888877 33334444444433 23222123358999999999999999
Q ss_pred HHHcC-CCEEEEeeccCCcCccccccceeecCCcccccccccccceEeccccCCCEEEEEeccccccHHHHHHHHHHHhC
Q psy1963 86 SVKYN-IPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSV 164 (250)
Q Consensus 86 A~~l~-ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~ 164 (250)
|..++ .|+.+.+|++...... .. ..+.+. .+|++|+||||+++||+|+.++++.|++.
T Consensus 198 A~~L~~~~~~~~~k~R~~~~~~----~~----------------~~~~~~-v~g~~viiVDDii~TG~T~~~a~~~L~~~ 256 (330)
T PRK02812 198 AKKLNDAPLAIIDKRRQAHNVA----EV----------------LNVIGD-VKGKTAILVDDMIDTGGTICEGARLLRKE 256 (330)
T ss_pred HHHhCCCCEEEEEeeccCCcee----ee----------------Eecccc-CCCCEEEEEccccCcHHHHHHHHHHHhcc
Confidence 99994 8999888864321111 00 112233 58999999999999999999999999999
Q ss_pred CCeEEEEEEEEeCC-ccHHHHHHhcCC-cEEEeecH
Q psy1963 165 GIVVTDVLTIVDRE-QGGRANLKQLGY-TLHSLFTL 198 (250)
Q Consensus 165 Ga~vv~~~vlvd~~-~~~~~~l~~~g~-~v~sl~~~ 198 (250)
|++.+.+++.+... .++.++|++.++ .+++.-++
T Consensus 257 Ga~~v~~~~tH~v~s~~a~~~l~~~~id~iv~tnti 292 (330)
T PRK02812 257 GAKQVYACATHAVFSPPAIERLSSGLFEEVIVTNTI 292 (330)
T ss_pred CCCeEEEEEEcccCChHHHHHHhhCCCCEEEEeCCC
Confidence 99999998876665 456777765443 44444444
No 48
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=99.49 E-value=3e-13 Score=127.49 Aligned_cols=147 Identities=14% Similarity=0.221 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHHHHHHcCCCEE--EEeeccCCcCccccccceeecCCcccccccc
Q psy1963 48 KLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSVKYNIPML--IRRKDVKTYGTKKLIEGVYEKGDKRKDVKTY 125 (250)
Q Consensus 48 ~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~lA~~l~ip~~--~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~ 125 (250)
+.+..+|+.||+.. ..++|+|+++|.+|+++|..+|..+|+|+. ++|+. ..|...+....-. +....-
T Consensus 296 ~~R~~~G~~La~~~---~~~~DvVv~VP~sg~~~A~g~A~~lgip~~~~L~r~~--y~grtfi~p~q~~-----R~~~~~ 365 (500)
T PRK07349 296 SYRQRLGQQLAKES---PVDADLVIGVPDSGIPAAIGFSQASGIPYAEGLIKNR--YVGRTFIQPTQSM-----RESGIR 365 (500)
T ss_pred HHHHHHHHHHhhhc---ccCCcEEEEeccccHHHHHHHHHHHCCCchhceEEEe--ccCccccCCCHHH-----HHhhhh
Confidence 56778888888544 346899999999999999999999999985 34432 2222211110000 000000
Q ss_pred cccceEeccccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEEEe-----------CCcc--------HHHHH-
Q psy1963 126 GTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVD-----------REQG--------GRANL- 185 (250)
Q Consensus 126 ~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vlvd-----------~~~~--------~~~~l- 185 (250)
.+...+. ...+||+||||||++|||+|+.+++++|+++||+.+.+.+.-. .... ..+.+
T Consensus 366 ~kl~~~~-~~~~gkrVlLVDDvIttGtTl~~~~~~Lr~aGAkeV~~~i~sPp~~~pc~ygid~~~~~eLia~~~~~eei~ 444 (500)
T PRK07349 366 MKLNPLK-DVLAGKRIIIVDDSIVRGTTSRKIVKALRDAGATEVHMRISSPPVTHPCFYGIDTDTQDQLIAATKSVEEIA 444 (500)
T ss_pred eeeeccc-cccCCCEEEEEeceeCCcHHHHHHHHHHHHhCCeEEEEEeCCCcccccccccCCCCCHHHHhhcCCCHHHHH
Confidence 0001112 2358999999999999999999999999999999988775421 1100 11222
Q ss_pred HhcCCcEEEeecHHHHHHHH
Q psy1963 186 KQLGYTLHSLFTLSSVMDIL 205 (250)
Q Consensus 186 ~~~g~~v~sl~~~~~l~~~~ 205 (250)
+..|.+-...++++++.+..
T Consensus 445 ~~igadsl~yls~e~l~~a~ 464 (500)
T PRK07349 445 EQIGVDSLAYLSWEGMLEAT 464 (500)
T ss_pred HHhCCCeEeccCHHHHHHHh
Confidence 23677777777777776665
No 49
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=99.48 E-value=1.2e-12 Score=122.39 Aligned_cols=118 Identities=18% Similarity=0.225 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHHHHHHcCCCE--EEEeeccCCcCccccccceeecCCcccccccc
Q psy1963 48 KLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSVKYNIPM--LIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTY 125 (250)
Q Consensus 48 ~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~lA~~l~ip~--~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~ 125 (250)
+.+..+|+.||+.+.. +.|.|+++|.+|+++|..+|+.+|+|+ .++||.. .+...+........ . .
T Consensus 259 ~~R~~~G~~La~~~~~---~~d~Vv~vPd~g~~~A~~~A~~lgip~~~~l~rk~~--~~r~~i~~~qr~rn-----~--~ 326 (445)
T PRK08525 259 EVRKKMGEELAKKFPI---KADFVVPVPDSGVPAAIGYAQESGIPFEMAIVRNHY--VGRTFIEPTQEMRN-----L--K 326 (445)
T ss_pred HHHHHHHHHHHHHhcc---cCCeEEECCchHHHHHHHHHHHhCCCccceEEEeec--cccccCCHHHHHHh-----h--h
Confidence 4677899999988764 478999999999999999999999997 5666642 22110000000000 0 0
Q ss_pred cccce-EeccccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEEEeC
Q psy1963 126 GTKKL-IEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDR 177 (250)
Q Consensus 126 ~~~~~-i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~ 177 (250)
.++.+ ..+...+||+|+||||++|||+|+.++++.|+++||+.+.+++....
T Consensus 327 ~~~~~~~~~~~v~gK~VlLVDDvitTG~Tl~~a~~~Lr~aGA~~V~v~~~hp~ 379 (445)
T PRK08525 327 VKLKLNPMSKVLEGKRIVVIDDSIVRGTTSKKIVSLLRAAGAKEIHLRIACPE 379 (445)
T ss_pred eeEEecccccccCCCeEEEEecccCcHHHHHHHHHHHHhcCCCEEEEEEECCC
Confidence 00111 11233589999999999999999999999999999999888887654
No 50
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=99.48 E-value=3.3e-13 Score=112.65 Aligned_cols=122 Identities=15% Similarity=0.157 Sum_probs=77.9
Q ss_pred ccCCHHHHHHHHHHHHHHHhhcC-CCccEEEecCC-------CCHHHHHHHHHHc----CC-CEEEEeecc-CCcCcccc
Q psy1963 43 IISYPKLMDYLSTIINDYLNINK-ISARTVCGVPY-------TALPIATAVSVKY----NI-PMLIRRKDV-KTYGTKKL 108 (250)
Q Consensus 43 ~~~~p~~~~~l~~~la~~i~~~~-~~~d~Ivgv~~-------~Gi~~a~~lA~~l----~i-p~~~~rk~~-k~~g~~~~ 108 (250)
+-++..+...++..++..+.... ..+|.|++||. +|++.+..+|..+ ++ .-.+.|... ++.+..
T Consensus 54 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~ivpVP~~~~r~~~RGfnq~~~la~~l~~~~~~~~~~l~r~~~~~Q~~l~-- 131 (190)
T TIGR00201 54 FRGQAEIIRALASLLSLTVSKAYRDLPDVIVPVPLSKEREWRRGFNQADLLAQCLSRWLFNYHNIVIRLNNETQSKLK-- 131 (190)
T ss_pred cCCChHHHHHHHHHHHHHHHhhccCCCCEEEeCCCCHHHHHHhCCCHHHHHHHHHHHHhCCCcceEEEecccccccCC--
Confidence 45678888889988887766432 23689999997 5997666666554 33 112333322 122211
Q ss_pred ccceeecCCcccccccccccceEeccccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEEE
Q psy1963 109 IEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIV 175 (250)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vlv 175 (250)
..++.. ..-+.+. +.+....|++|||||||+|||+|+.++++.|+++|++.+.++++.
T Consensus 132 ~~~R~~--------n~~~~f~-~~~~~~~~~~vllvDDV~TTGaTl~~~~~~L~~~Ga~~V~~~~la 189 (190)
T TIGR00201 132 ATLRFL--------NLENAFD-LKNNSFQGRNIVLVDDVVTTGATLHEIARLLLELGAASVQVWTLA 189 (190)
T ss_pred HHHHHH--------HHhCcEE-ccCCCCCCCEEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEEEE
Confidence 001100 0000001 111124789999999999999999999999999999999988874
No 51
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=99.46 E-value=1.1e-12 Score=108.23 Aligned_cols=121 Identities=14% Similarity=0.165 Sum_probs=82.4
Q ss_pred CCHHHHHHHHHHHHHHHhhc--CCCccEEEecCCCCHHHHHHHHHHc----CCC--EEEEeeccCCcCccccccceeecC
Q psy1963 45 SYPKLMDYLSTIINDYLNIN--KISARTVCGVPYTALPIATAVSVKY----NIP--MLIRRKDVKTYGTKKLIEGVYEKG 116 (250)
Q Consensus 45 ~~p~~~~~l~~~la~~i~~~--~~~~d~Ivgv~~~Gi~~a~~lA~~l----~ip--~~~~rk~~k~~g~~~~~~~~~~~~ 116 (250)
-+++-+....+.||..+.+. +...++|+|+..||+++|..++..+ ++| +.+.+.. .|+......+.
T Consensus 7 ~s~~~i~~~i~~la~~i~~~~~~~~~~viv~il~gG~~~a~~La~~L~~~~~~~~~~~~l~~~--~y~~~~~~~~~---- 80 (176)
T PRK05205 7 LDAEALRRALTRIAHEIIERNKGLDNLVLVGIKTRGVWLAERLAERLEQLEGVDVPVGELDIT--LYRDDLTKKGL---- 80 (176)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEccCCHHHHHHHHHHHHHHcCCCCccceEEEE--EeecCccccCc----
Confidence 35555666777888888764 2357899999999999999999999 544 3333321 11110000000
Q ss_pred CcccccccccccceEeccccCCCEEEEEeccccccHHHHHHHHHHHhCC-CeEEEEEEEEeCC
Q psy1963 117 DKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVG-IVVTDVLTIVDRE 178 (250)
Q Consensus 117 ~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~G-a~vv~~~vlvd~~ 178 (250)
.... +...+.+ ...|++||||||+++||+|+.++++.|++.| ++.+.+++++++.
T Consensus 81 -----~~~~-~~~~l~~-~v~gr~VLIVDDIidTG~Tl~~~~~~L~~~G~~~~v~~avL~~K~ 136 (176)
T PRK05205 81 -----HPQV-KPTDIPF-DIEGKRVILVDDVLYTGRTIRAALDALFDYGRPARVQLAVLVDRG 136 (176)
T ss_pred -----cccc-ccccCCC-CCCCCEEEEEecccCcHHHHHHHHHHHHhcCCCcEEEEEEEEECC
Confidence 0000 0011112 2589999999999999999999999999998 7889999999984
No 52
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=99.44 E-value=1.3e-12 Score=122.95 Aligned_cols=114 Identities=16% Similarity=0.228 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHHHHHHcCCCEE--EEeeccCCcCccccccceeecCCcccccccc
Q psy1963 48 KLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSVKYNIPML--IRRKDVKTYGTKKLIEGVYEKGDKRKDVKTY 125 (250)
Q Consensus 48 ~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~lA~~l~ip~~--~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~ 125 (250)
+++..+++.|++.... ++|+|++||.+|+++|..+|..+++|+. ++|++ ..|...+.+....+. . ..
T Consensus 279 ~~R~~~g~~La~~~~~---~~D~Vv~VP~sg~~~A~~la~~lgip~~~~lir~~--y~grt~i~~~q~~r~-----~-~v 347 (479)
T PRK09123 279 EVRKNIGRELARESPV---DADVVVPVPDSGVPAAIGYAQESGIPFELGIIRNH--YVGRTFIQPTQQIRN-----L-GV 347 (479)
T ss_pred HHHHHHHHHHHHhCCC---CCeEEEEcCccHHHHHHHHHHhcCCCeeheEEEEe--ecCcccccccccccc-----c-cE
Confidence 6777888888876543 5899999999999999999999999985 45542 122221111100000 0 00
Q ss_pred cccc-eEeccccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEE
Q psy1963 126 GTKK-LIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLT 173 (250)
Q Consensus 126 ~~~~-~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~v 173 (250)
+.. .......+||+||||||+++||+|+.++++.|+++||+.+.+++
T Consensus 348 -~~k~~~~~~~~~gk~vvlvDD~i~tG~Tl~~~~~~l~~~Ga~~v~~~~ 395 (479)
T PRK09123 348 -KLKHNANRAVIEGKRVVLVDDSIVRGTTSRKIVQMLRDAGAKEVHLRI 395 (479)
T ss_pred -EEEecccccccCCCEEEEEeceeCchHHHHHHHHHHHHcCCCEEEEEE
Confidence 000 01123358999999999999999999999999999999888877
No 53
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=99.44 E-value=7.5e-13 Score=125.44 Aligned_cols=149 Identities=11% Similarity=0.165 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHhhcC--CCccEEEecCCCCHHHHHHHHHHcCCCEE--EEeeccCCcCccccccceeecCCcccccccc
Q psy1963 50 MDYLSTIINDYLNINK--ISARTVCGVPYTALPIATAVSVKYNIPML--IRRKDVKTYGTKKLIEGVYEKGDKRKDVKTY 125 (250)
Q Consensus 50 ~~~l~~~la~~i~~~~--~~~d~Ivgv~~~Gi~~a~~lA~~l~ip~~--~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~ 125 (250)
...+++.||+.+.... .+.|+|++||.+|.++|..+|..+|+|+. +.|+. ..+...+...... +....-
T Consensus 274 r~~lg~~LA~~l~~~~~~~~~D~VvpVP~s~~~~A~~la~~lgip~~~~l~k~~--~~~rt~i~~~q~~-----R~~~vr 346 (501)
T PRK09246 274 RLRMGEKLAEKIKREWPDLDIDVVIPIPDTSRDAALEIARILGVPYREGFVKNR--YVGRTFIMPGQAQ-----RKKSVR 346 (501)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEEeCccHHHHHHHHHHHHCCCccceEEEEe--cccccccCcCHHH-----HHHHHH
Confidence 4456666666654431 24799999999999999999999999974 23332 1111100000000 000000
Q ss_pred cccceEeccccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEE-----------EeCCcc--------HHHHHH
Q psy1963 126 GTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTI-----------VDREQG--------GRANLK 186 (250)
Q Consensus 126 ~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vl-----------vd~~~~--------~~~~l~ 186 (250)
.++.... ...+||+||||||++|||+|+.++++.|+++||+.|.++++ +|.... ..+.++
T Consensus 347 ~~f~~~~-~~v~gK~VlLVDDvitTGaTl~~~~~~L~~aGA~~V~v~v~ap~i~~pc~ygid~~~~~eLia~~~~~e~i~ 425 (501)
T PRK09246 347 QKLNAIR-AEFKGKNVLLVDDSIVRGTTSEQIVQMAREAGAKKVYFASAAPPVRFPNVYGIDMPTANELIAHGRTVEEIR 425 (501)
T ss_pred hhcCCcc-ccccCCeEEEEeccccccHHHHHHHHHHHHcCCCEEEEEEEccccccCcccccCCCCHHHHhhcCCCHHHHH
Confidence 0011112 23589999999999999999999999999999999999887 333211 123332
Q ss_pred -hcCCcEEEeecHHHHHHHHH
Q psy1963 187 -QLGYTLHSLFTLSSVMDILY 206 (250)
Q Consensus 187 -~~g~~v~sl~~~~~l~~~~~ 206 (250)
..|.+-...++++++.+...
T Consensus 426 ~~ig~dsl~yls~~~l~~a~~ 446 (501)
T PRK09246 426 QIIGADGLIYQDLEDLIEAVR 446 (501)
T ss_pred HHhCCCeEeecCHHHHHHHhc
Confidence 47888888889988888774
No 54
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=99.44 E-value=5.9e-13 Score=124.91 Aligned_cols=116 Identities=16% Similarity=0.192 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHHHHHHcCCCEE--EEeeccCCcCccccccceeecCCcccccccc
Q psy1963 48 KLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSVKYNIPML--IRRKDVKTYGTKKLIEGVYEKGDKRKDVKTY 125 (250)
Q Consensus 48 ~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~lA~~l~ip~~--~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~ 125 (250)
+.+..+|+.||+... .++|+|++||..|.+.|..+|+.+|+|+. ++|+. ..+.........+ +.....
T Consensus 267 ~~R~~~G~~La~~~~---~~~D~vv~VP~s~~~~A~~~a~~~gip~~~~lik~~--~~~rt~~~~~~~~-----R~~~v~ 336 (471)
T PRK06781 267 AARKNMGKRLAAEAP---IEADVVTGVPDSSISAAIGYAEATGIPYELGLIKNR--YVGRTFIQPSQEL-----REQGVK 336 (471)
T ss_pred HHHHHHHHHHhhhCC---CCCcEEEEcChhHHHHHHHHHHHhCCCcccceEEEc--cCCCCCcCCCHHH-----HHHHHh
Confidence 467789999997653 35899999999999999999999999985 34432 1121100000000 000000
Q ss_pred cccceEeccccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEE
Q psy1963 126 GTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTI 174 (250)
Q Consensus 126 ~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vl 174 (250)
..+..+. ...+||+|+||||++|||+|+.+++++|+++||+.+.+.+.
T Consensus 337 ~~f~~~~-~~i~gk~VlLVDDvittGtTl~~~~~~Lk~aGA~eV~v~i~ 384 (471)
T PRK06781 337 MKLSAVR-GVVEGKRVVMIDDSIVRGTTSKRIVRMLREAGATEVHVRIA 384 (471)
T ss_pred cceeccc-cccCCceEEEEeceeccchHHHHHHHHHHHcCCcEEEEEEC
Confidence 0112122 23589999999999999999999999999999999888775
No 55
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=99.44 E-value=2.3e-12 Score=121.17 Aligned_cols=118 Identities=16% Similarity=0.182 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHHHHHHcCCCEEE--EeeccCCcCccccccceeecCCccccccccc
Q psy1963 49 LMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSVKYNIPMLI--RRKDVKTYGTKKLIEGVYEKGDKRKDVKTYG 126 (250)
Q Consensus 49 ~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~lA~~l~ip~~~--~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~ 126 (250)
.+..+|+.||+.+.. +.|+|+++|.+|.++|..+|+.+|+|+.. .|.+ ..|...+...... .......
T Consensus 273 ~R~~~G~~La~~~~~---~~D~Vv~vPdsg~~~A~~~A~~lgip~~~~l~r~~--~~~rtfi~~~q~~-----R~~~~~~ 342 (469)
T PRK05793 273 SRVRAGRQLYKEYPV---DADIVIGVPDSGIPAAIGYAEASGIPYGIGFIKNK--YVGRTFIAPSQEL-----RERAVRV 342 (469)
T ss_pred HHHHHHHHHHHhcCC---CCCEEEEcCccHHHHHHHHHHHhCCCEeeeEEEee--eccccccChhHhh-----hhhhheE
Confidence 556889999887653 57899999999999999999999999853 3432 1111100000000 0000000
Q ss_pred ccceEeccccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEEEeC
Q psy1963 127 TKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDR 177 (250)
Q Consensus 127 ~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~ 177 (250)
+...+. ...+||+||||||++|||+|+.++++.|+++||+.+.+++....
T Consensus 343 k~~~~~-~~v~gk~VlLVDD~ItTGtTl~~~~~~Lr~aGAk~V~~~~~~p~ 392 (469)
T PRK05793 343 KLNPLK-VNVEGKRVVLIDDSIVRGTTSKRLVELLRKAGAKEVHFRVSSPP 392 (469)
T ss_pred ecccCc-cccCCCEEEEEccccCchHHHHHHHHHHHHcCCCEEEEEEECCC
Confidence 001111 22589999999999999999999999999999999888886543
No 56
>PLN02440 amidophosphoribosyltransferase
Probab=99.43 E-value=1.5e-12 Score=122.63 Aligned_cols=148 Identities=14% Similarity=0.176 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHHHHHHcCCCEE--EEeeccCCcCccccccceeecCCcccccccc
Q psy1963 48 KLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSVKYNIPML--IRRKDVKTYGTKKLIEGVYEKGDKRKDVKTY 125 (250)
Q Consensus 48 ~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~lA~~l~ip~~--~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~ 125 (250)
+....+++.||+.+.. ++|+|++||.+|+++|..+|+.+|+|+. ++|.+ ..|...+.+.+... ....-
T Consensus 259 ~~r~~~g~~La~~~~~---~~d~vvpVP~s~~~~A~~la~~lgiP~~~~lvr~r--y~~rt~i~~~q~~r-----~~~~~ 328 (479)
T PLN02440 259 ESRLEFGEILATEIPV---DCDVVIPVPDSGRVAALGYAAKLGVPFQQGLIRSH--YVGRTFIEPSQKIR-----DFSVK 328 (479)
T ss_pred HHHHHHHHHHHHhcCC---CCCEEEEeCCcHHHHHHHHHHHhCCCchhheEEEe--eccccccCcchhhh-----hhhhe
Confidence 3455778888877653 5899999999999999999999999975 45533 11221110110000 00000
Q ss_pred cccceEeccccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEEEeC-----------Cc-c-------HHHHH-
Q psy1963 126 GTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDR-----------EQ-G-------GRANL- 185 (250)
Q Consensus 126 ~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~-----------~~-~-------~~~~l- 185 (250)
.+..... ...+||+||||||++|||+|+.++++.|+++||+.+.++++... .. . ..+.+
T Consensus 329 ~k~~~~~-~~v~gk~VlLVDDiittGtTl~~i~~~L~~aGa~~V~v~v~~p~~~~p~~~G~d~p~~~~li~~~~~~~ei~ 407 (479)
T PLN02440 329 LKLNPVR-SVLEGKRVVVVDDSIVRGTTSSKIVRMLREAGAKEVHMRIASPPIIASCYYGVDTPSREELISNRMSVEEIR 407 (479)
T ss_pred eeeeccc-ccccCceEEEEeceeCcHHHHHHHHHHHHhcCCCEEEEEEECCcccccceeeccCCCHHHHhhcCCCHHHHH
Confidence 0001111 23589999999999999999999999999999999998887522 11 0 01222
Q ss_pred HhcCCcEEEeecHHHHHHHHH
Q psy1963 186 KQLGYTLHSLFTLSSVMDILY 206 (250)
Q Consensus 186 ~~~g~~v~sl~~~~~l~~~~~ 206 (250)
+..|.+....++++++.+.+.
T Consensus 408 ~~~~~dsl~~l~~~~l~~~~~ 428 (479)
T PLN02440 408 KFIGCDSLAFLPLEDLKKSLG 428 (479)
T ss_pred HHhCCCEEEEecHHHHHHHHc
Confidence 357889999999999988885
No 57
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=99.43 E-value=3.2e-12 Score=108.00 Aligned_cols=119 Identities=10% Similarity=0.077 Sum_probs=84.2
Q ss_pred CCHHHHHHHHHHHHHHHhhcC-------CCccEEEecCCCCHHHHHHHHHHcC---CCEEEEeeccCCcCccccccceee
Q psy1963 45 SYPKLMDYLSTIINDYLNINK-------ISARTVCGVPYTALPIATAVSVKYN---IPMLIRRKDVKTYGTKKLIEGVYE 114 (250)
Q Consensus 45 ~~p~~~~~l~~~la~~i~~~~-------~~~d~Ivgv~~~Gi~~a~~lA~~l~---ip~~~~rk~~k~~g~~~~~~~~~~ 114 (250)
-+.+-.....+.||..|.+.. .++++|+|+..||+++|..|++.++ +|+.+-.-...+|+.+....+..
T Consensus 28 is~e~I~~~i~~LA~~I~~~~~~~~~~~~~~~vivgVlkGg~~fa~dL~r~L~~~~~~~~vdfi~vssY~~~~~s~g~~- 106 (211)
T PTZ00271 28 VTQEQVWAATAKCAKKIAEDYRSFKLTTENPLYLLCVLKGSFIFTADLARFLADEGVPVKVEFICASSYGTGVETSGQV- 106 (211)
T ss_pred cCHHHHHHHHHHHHHHHHHHhhhccccCCCCeEEEEEcCCCHHHHHHHHHHhcccCCCeeEEEEEEEecCCCCcccCce-
Confidence 344445555666777776542 2367899999999999999999996 77432222223454321111110
Q ss_pred cCCcccccccccccceEe--ccccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEEEeCC
Q psy1963 115 KGDKRKDVKTYGTKKLIE--GVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDRE 178 (250)
Q Consensus 115 ~~~~~~~~~~~~~~~~i~--g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~ 178 (250)
.... .....||+|||||||+.||.|+.++.+.|++.|++-+.++|++++.
T Consensus 107 --------------~i~~~~~~~i~gk~VLIVDDIvDTG~TL~~v~~~l~~~~p~svk~avL~dK~ 158 (211)
T PTZ00271 107 --------------RMLLDVRDSVENRHILIVEDIVDSAITLQYLMRFMLAKKPASLKTVVLLDKP 158 (211)
T ss_pred --------------EEecCCCCCCCCCEEEEEecccCCHHHHHHHHHHHHhcCCCEEEEEEEEEcc
Confidence 1111 1236899999999999999999999999999999999999999996
No 58
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=99.42 E-value=3e-13 Score=115.64 Aligned_cols=117 Identities=19% Similarity=0.273 Sum_probs=80.7
Q ss_pred ccCCHHHHHHHHHHHHHHHhhcCCCccEEEecCC-------CCHHHHHHHHHHc----CCCEEEEeecc--CCcCccccc
Q psy1963 43 IISYPKLMDYLSTIINDYLNINKISARTVCGVPY-------TALPIATAVSVKY----NIPMLIRRKDV--KTYGTKKLI 109 (250)
Q Consensus 43 ~~~~p~~~~~l~~~la~~i~~~~~~~d~Ivgv~~-------~Gi~~a~~lA~~l----~ip~~~~rk~~--k~~g~~~~~ 109 (250)
+-.+..+...+++.|+..+......+|.|+.||. +||+.+..+|+.+ |+|+...|.+. .+.|.. .
T Consensus 87 f~~~~~l~~~la~~l~~~~~~~~~~~~~iVpVPls~~r~~~RGFNQ~~~la~~l~~~~~~~~~~~r~k~~~~q~~l~--~ 164 (225)
T COG1040 87 FQGDLDLAKLLARLLAKALDDFLEKPDLIVPVPLSPSRLLERGFNQSELLARALARRLGKPIALRRVKDTSPQQGLK--A 164 (225)
T ss_pred hCCchhHHHHHHHHHHHHHhhccccCCeEEEecCCHHHHHHcCCCHHHHHHHHHHHHhCchHHHHHHhccccccccc--h
Confidence 4466778888888888888744457999999997 4998877777775 55543333221 111111 0
Q ss_pred cceeecCCcccccccccccceEecc------ccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEEEe
Q psy1963 110 EGVYEKGDKRKDVKTYGTKKLIEGV------YEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVD 176 (250)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~i~g~------~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vlvd 176 (250)
.+ +...+++. ....++|+|||||+|||+|+.++.+.|+++|++.+.++++..
T Consensus 165 ~~---------------rr~nl~~aF~~~~~~~~~~~vlLvDDV~TTGaTl~~~~~~L~~~Ga~~v~~~~lar 222 (225)
T COG1040 165 LE---------------RRRNLKGAFRLKKGIEEPKNVLLVDDVYTTGATLKEAAKLLREAGAKRVFVLTLAR 222 (225)
T ss_pred HH---------------HHHhccCCeecCCCCCCCCeEEEEecccccHHHHHHHHHHHHHcCCceEEEEEEEe
Confidence 00 01222222 222389999999999999999999999999999999988753
No 59
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=99.40 E-value=3.1e-12 Score=119.18 Aligned_cols=114 Identities=13% Similarity=0.158 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHHHHHHcCCCEE--EEeeccCCcCccccccceeecCCcccccccc
Q psy1963 48 KLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSVKYNIPML--IRRKDVKTYGTKKLIEGVYEKGDKRKDVKTY 125 (250)
Q Consensus 48 ~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~lA~~l~ip~~--~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~ 125 (250)
..+..+|+.||+... .++|+|+++|.+|.++|..+|+.+|+|+. +.|.+ ..|...+......... .
T Consensus 255 ~~R~~~G~~La~~~~---~~~D~Vv~VPdsg~~~A~~~a~~lgip~~~~l~k~r--~~~rtfi~~~qr~~~~-------~ 322 (442)
T PRK08341 255 SARYRMGVELARESP---AEGDVVIAVPDSGRTAALGFAHESGIPYMEGLIKNR--YIGRTFIMPSGRELKV-------K 322 (442)
T ss_pred HHHHHHHHHhhcccC---CCCceEEEecCchHHHHHHHHHHhCCCchheEEEec--cccccccCcCchhhhh-------e
Confidence 466688888887654 35799999999999999999999999985 33432 1122211111100000 0
Q ss_pred cccceEeccccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEE
Q psy1963 126 GTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTI 174 (250)
Q Consensus 126 ~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vl 174 (250)
.+...+.+ ..+||+||||||++|||+|+.+++++|+++||+.+.+.+.
T Consensus 323 ~k~~~~~~-~v~gk~VlLVDD~IttGtTl~~~~~~L~~aGAk~V~~~~~ 370 (442)
T PRK08341 323 LKLSPVRE-VINGKRVVLVDDSIVRGTTMKRIVKMLRDAGAREVHVRIA 370 (442)
T ss_pred eeeccccc-ccCCCEEEEEeeeeccHHHHHHHHHHHHhcCCcEEEEEEc
Confidence 00112222 3589999999999999999999999999999998888774
No 60
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=99.39 E-value=1.2e-11 Score=114.13 Aligned_cols=156 Identities=9% Similarity=0.042 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHCCceeeCCccccCccccCeE---eecccccCCHHHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHH
Q psy1963 7 KLNHLCLQLFDIDALKFGDFVTKVGIKTPVY---LDLRGIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIAT 83 (250)
Q Consensus 7 ~~~~~~~~l~~~~~~~~g~f~l~sG~~s~~y---~d~~~~~~~p~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~ 83 (250)
..+.+++.|...|+-++=.+.+++++...|| +-...+... ..+++.+........+|+++..||...|.
T Consensus 224 sak~vA~lL~~~G~d~VitvDlHs~~i~~fF~~~iPvdnl~a~--------~~~a~~i~~~~l~~pVVVsPD~Ga~~RAr 295 (439)
T PTZ00145 224 SAADVARMIEAMGVDRVVAIDLHSGQIQGFFGPRVPVDNLEAQ--------LIGLDYFTKKDLYKPVIVSPDAGGVYRAR 295 (439)
T ss_pred hHHHHHHHHHHcCCCeEEEEecChHHHHhhcCCCccccccccc--------HHHHHHHhhcCCCccEEEccCcchHHHHH
Confidence 4567888887778777767888888877777 122222222 22334443322223589999999999999
Q ss_pred HHHHHcC------CCEEEEeeccCCcCccccccceeecCCcccccccccccceEeccccCCCEEEEEeccccccHHHHHH
Q psy1963 84 AVSVKYN------IPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILET 157 (250)
Q Consensus 84 ~lA~~l~------ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a 157 (250)
.+|..++ .++.+..|.+...+.. .. ..+.|. .+|++||||||+++||+|+.++
T Consensus 296 ~~A~~L~~~~~~~~~~avl~K~R~~~~~v----~~----------------~~lvgd-V~Gk~vIIVDDIIdTG~Tl~~a 354 (439)
T PTZ00145 296 KFQDGLNHRGISDCGIAMLIKQRTKPNEI----EK----------------MDLVGN-VYDSDVIIVDDMIDTSGTLCEA 354 (439)
T ss_pred HHHHHhccccccCCCEEEEEeecCCCCce----EE----------------EeccCC-CCCCEEEEEcceeCcHHHHHHH
Confidence 9999997 7888888764322211 00 112343 5899999999999999999999
Q ss_pred HHHHHhCCCeEEEEEEEEeCC-ccHHHHHHhcCCc
Q psy1963 158 INDLKSVGIVVTDVLTIVDRE-QGGRANLKQLGYT 191 (250)
Q Consensus 158 ~~~L~~~Ga~vv~~~vlvd~~-~~~~~~l~~~g~~ 191 (250)
++.|+++||..+.+++.+... .++.++|.+.|+.
T Consensus 355 a~~Lk~~GA~~V~~~~THglfs~~A~~rl~~s~i~ 389 (439)
T PTZ00145 355 AKQLKKHGARRVFAFATHGLFSGPAIERIEASPLE 389 (439)
T ss_pred HHHHHHcCCCEEEEEEEcccCChhHHHHHhcCCCC
Confidence 999999999999998877776 4567777665543
No 61
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=99.39 E-value=1.6e-12 Score=107.93 Aligned_cols=110 Identities=15% Similarity=0.200 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHHHHHHcCCCEEEEeeccCCcCccccccceeecCCccccccccccc
Q psy1963 49 LMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTK 128 (250)
Q Consensus 49 ~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~lA~~l~ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~ 128 (250)
-...++..+|+++.+.+..||+|+++.+||+.+|..++.+|++.-++.-+. +.|+..+...+. .
T Consensus 11 ~I~~~~~~lA~kI~~s~~~PDvIiaiaRGG~~pariLsd~L~~~~l~~i~v-~~y~~~~~~~~~---------------~ 74 (192)
T COG2236 11 EIHRLCRALAEKIRASGFKPDVIVAIARGGLIPARILSDFLGVKPLYSIKV-EHYDETAERDGE---------------A 74 (192)
T ss_pred HHHHHHHHHHHHHHHcCCCCCEEEEEcCCceehHHHHHHHhCCCceEEEEE-EEehhhcccCCc---------------c
Confidence 456788999999998888999999999999999999999999854333332 223322111100 0
Q ss_pred ceEec---cccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEE
Q psy1963 129 KLIEG---VYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTI 174 (250)
Q Consensus 129 ~~i~g---~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vl 174 (250)
....+ ....||+|||||||.+||.||..+.+.|++..+..+.++++
T Consensus 75 ~v~~~~~~d~l~GkkVLIVDDI~DTG~Tl~~a~~~l~~~~p~e~rta~l 123 (192)
T COG2236 75 KVKYPITIDPLSGKKVLIVDDIVDTGETLELALEELKKLAPAEVRTAVL 123 (192)
T ss_pred eeecCccccccCCCeEEEEecccCchHhHHHHHHHHHhhCchhhhhhhh
Confidence 11111 11689999999999999999999999999955544444443
No 62
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.38 E-value=1.4e-11 Score=99.77 Aligned_cols=123 Identities=18% Similarity=0.271 Sum_probs=91.9
Q ss_pred ccCCHHHHHHHHHHHHHHHhhcC-CCccEEEecCCCCHHHHHHHHHHcCCCEEEEeeccCCcCccccccceeecCCcccc
Q psy1963 43 IISYPKLMDYLSTIINDYLNINK-ISARTVCGVPYTALPIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKD 121 (250)
Q Consensus 43 ~~~~p~~~~~l~~~la~~i~~~~-~~~d~Ivgv~~~Gi~~a~~lA~~l~ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~ 121 (250)
++-+.+-.+.-.+.+|+.+.+.. .+.-+++|+-.|+++|+.-+.++++.|.-+-.-...+||.+...++..
T Consensus 10 vLisee~I~~ri~ela~~I~~~y~g~~~~vv~iLkGs~~F~~dL~r~i~~~~e~dFm~vSSYg~~t~ssg~v-------- 81 (178)
T COG0634 10 VLISEEQIKARIKELAAQITEDYGGKDPLVVGVLKGSFPFMADLIRAIDFPLEVDFMHVSSYGGGTSSSGEV-------- 81 (178)
T ss_pred EeeCHHHHHHHHHHHHHHHHHhhCCCceEEEEEcccchhhHHHHHHhcCCCceeEEEEEeccCCCcccCCce--------
Confidence 33344445555566777777652 356789999999999999999999999755444445566553222221
Q ss_pred cccccccceEec--cccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEEEeCCcc
Q psy1963 122 VKTYGTKKLIEG--VYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQG 180 (250)
Q Consensus 122 ~~~~~~~~~i~g--~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~~~ 180 (250)
..+.+ ...+|++||||||++.||.|+..+.+.|+..||+.+.+++++++..+
T Consensus 82 -------~i~kDld~di~grdVLiVeDIiDsG~TLs~i~~~l~~r~a~sv~i~tLldK~~~ 135 (178)
T COG0634 82 -------KILKDLDEDIKGRDVLIVEDIIDSGLTLSKVRDLLKERGAKSVRIATLLDKPER 135 (178)
T ss_pred -------EEecccccCCCCCeEEEEecccccChhHHHHHHHHHhCCCCeEEEEEEeeCccc
Confidence 22222 33689999999999999999999999999999999999999999853
No 63
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=99.38 E-value=2.2e-12 Score=121.07 Aligned_cols=147 Identities=12% Similarity=0.171 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHHHHHHcCCCEE--EEeeccCCcCccccccceeecCCcccccccc
Q psy1963 48 KLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSVKYNIPML--IRRKDVKTYGTKKLIEGVYEKGDKRKDVKTY 125 (250)
Q Consensus 48 ~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~lA~~l~ip~~--~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~ 125 (250)
+.+..+|+.||+... .++|+|++||..|.++|..+|+.+|+|+. ++|+. ..+...+....-. +.....
T Consensus 267 ~~R~~~G~~La~~~~---~~~D~VvpVP~s~~~~A~gla~~~gip~~~~lik~~--~~~Rt~i~~~~~~-----R~~nv~ 336 (475)
T PRK07631 267 TARKNLGKRLALEAP---VEADVVTGVPDSSISAAIGYAEATGIPYELGLIKNR--YVGRTFIQPSQAL-----REQGVK 336 (475)
T ss_pred HHHHHHHHHHHhhCC---CCCcEEEEechhHHHHHHHHHHHHCCCcccceEEEe--cCCCCCcCCCHHH-----HHHHHh
Confidence 367789999987553 35899999999999999999999999985 34432 1121100110000 000000
Q ss_pred cccceEeccccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEEEe-----------CCcc--------HHHHH-
Q psy1963 126 GTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVD-----------REQG--------GRANL- 185 (250)
Q Consensus 126 ~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vlvd-----------~~~~--------~~~~l- 185 (250)
..+.... ...+||+||||||++|||+|+.+++++|+++||+.+.+.+--. .... ..+.+
T Consensus 337 ~~f~~~~-~~v~gk~VlLVDDsittGtTl~~~~~~L~~aGA~eV~v~~~sPpi~~pc~yGid~~~~~eLia~~~~~eei~ 415 (475)
T PRK07631 337 MKLSPVR-GVVEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVRISSPPITHPCFYGIDTSTKEELIASNHSVEEIR 415 (475)
T ss_pred hhhhhcc-cccCCceEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEEeCCCccCCcccCCCCCCHHHHhhcCCCHHHHH
Confidence 0011122 2358999999999999999999999999999999888776532 2110 01222
Q ss_pred HhcCCcEEEeecHHHHHHHH
Q psy1963 186 KQLGYTLHSLFTLSSVMDIL 205 (250)
Q Consensus 186 ~~~g~~v~sl~~~~~l~~~~ 205 (250)
+..|.+-...++++++.+..
T Consensus 416 ~~igadsl~yls~e~l~~a~ 435 (475)
T PRK07631 416 QLIGADSLAFLSQEGLLEGI 435 (475)
T ss_pred HHhCCCeEeccCHHHHHHHh
Confidence 23677777777777776665
No 64
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=99.37 E-value=7.1e-12 Score=118.47 Aligned_cols=150 Identities=13% Similarity=0.123 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHHHHHHcCCCEEEEeeccCCcCccccccceeecCCcccccccccc
Q psy1963 48 KLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGT 127 (250)
Q Consensus 48 ~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~lA~~l~ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~ 127 (250)
+.+..+|+.||+... .+.|+|++||.+|++.|..+|+.+|+|+.....+.+..|.......+.... ...-.+
T Consensus 286 ~~R~~~G~~La~~~~---~~~D~VvpVP~sG~~~A~g~a~~~gip~~~~l~kn~~~grtfi~~~q~~r~-----~~~r~k 357 (510)
T PRK07847 286 AARVEIGRRLAREHP---VEADLVIPVPESGTPAAVGYAQESGIPFGQGLVKNAYVGRTFIQPSQTIRQ-----LGIRLK 357 (510)
T ss_pred HHHHHHHHHHHhhCC---CCCeEEEeccCchHHHHHHHHHHhCCChhhceEeecccccCccCcchhhhh-----hceeee
Confidence 577789999997543 358999999999999999999999999843222112223221111100000 000000
Q ss_pred cceEeccccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEE-----------EeCCcc--------HHHHH-Hh
Q psy1963 128 KKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTI-----------VDREQG--------GRANL-KQ 187 (250)
Q Consensus 128 ~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vl-----------vd~~~~--------~~~~l-~~ 187 (250)
.+.+ ....+||+||||||++|||+|+.++++.|+++|++.+.+.+- +|.... ..+.+ +.
T Consensus 358 ~~~~-~~~~~gk~vllVDD~ittG~T~~~~~~~L~~~ga~~v~~ri~sPpi~~pc~yGid~~~~~eLia~~~~~eei~~~ 436 (510)
T PRK07847 358 LNPL-REVIRGKRLVVVDDSIVRGNTQRALVRMLREAGAAEVHVRISSPPVKWPCFYGIDFASRAELIANGLTVEEIRRS 436 (510)
T ss_pred cCcc-ccccCCCEEEEEecccCchHHHHHHHHHHHHcCCCEEEEEECCCCcCCCCcCcCCCCCHHHHHhcCCCHHHHHHH
Confidence 0111 223589999999999999999999999999999998777654 222211 11222 23
Q ss_pred cCCcEEEeecHHHHHHHHH
Q psy1963 188 LGYTLHSLFTLSSVMDILY 206 (250)
Q Consensus 188 ~g~~v~sl~~~~~l~~~~~ 206 (250)
.|.+....++++++.+...
T Consensus 437 igadsl~yls~e~l~~a~~ 455 (510)
T PRK07847 437 IGADSLGYISLDGMIAATE 455 (510)
T ss_pred hCCCeEeccCHHHHHHHhc
Confidence 6777777777777777663
No 65
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=99.36 E-value=8.2e-12 Score=117.27 Aligned_cols=146 Identities=12% Similarity=0.153 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHHHHHHcCCCEE--EEeeccCCcCccccccceeecCCcccccccc
Q psy1963 48 KLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSVKYNIPML--IRRKDVKTYGTKKLIEGVYEKGDKRKDVKTY 125 (250)
Q Consensus 48 ~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~lA~~l~ip~~--~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~ 125 (250)
+.+..+|+.||+... .+.|+|++||.+|.+.|..+|..+|+|+. +.|.+ ..+.....+..-.+. ...
T Consensus 275 ~~R~~~G~~La~~~~---~~~D~VvpVP~s~~~~A~g~a~~~gip~~~~L~r~r--~~~r~fi~~~q~~R~------~~~ 343 (474)
T PRK06388 275 QARVRMGMRLAKESP---VEADVVVPVPDSGRSQAIGFSMASGIPYTEGLIKNR--YSERTFIMPTQSDRK------AAI 343 (474)
T ss_pred HHHHHHHHHHHhhcc---CCCcEEEeeCCCcHHHHHHHHHHhCCCchhheEEec--ccCCcccCCchhhhh------hce
Confidence 356688888887653 35799999999999999999999999984 33432 112211111100000 000
Q ss_pred cccce-EeccccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEEEe-----------CCcc--------HHHHH
Q psy1963 126 GTKKL-IEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVD-----------REQG--------GRANL 185 (250)
Q Consensus 126 ~~~~~-i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vlvd-----------~~~~--------~~~~l 185 (250)
+..+ ......+||+||||||++|||+|+.+++++|+++||+.+.+.+--. .... ..+.+
T Consensus 344 -~~kl~~~~~~i~gk~VlLVDDsittGtTl~~~~~~L~~aGak~V~~ri~sPpi~~pc~yGid~~~~~eLia~~~~~eei 422 (474)
T PRK06388 344 -KLKLNPIREVISGKRIVLVDDSIVRGNTMRFIVKIMRKYGAKEVHVRIGSPHIIAPCYFGVDMKTKDQFIARGKTDEEI 422 (474)
T ss_pred -eEEeccccccccCceEEEEeCeECcHHHHHHHHHHHHHcCCCEEEEEeCCCCccCCcccCCCCCCHHHHHhcCCCHHHH
Confidence 0010 0012358999999999999999999999999999999888776522 1110 01222
Q ss_pred H-hcCCcEEEeecHHHHHHHH
Q psy1963 186 K-QLGYTLHSLFTLSSVMDIL 205 (250)
Q Consensus 186 ~-~~g~~v~sl~~~~~l~~~~ 205 (250)
+ ..|.+-...++++++.+..
T Consensus 423 ~~~igadsl~yls~~~l~~a~ 443 (474)
T PRK06388 423 NNEIGADSLAFLSIDGLKQAI 443 (474)
T ss_pred HHHhCCCeeeccCHHHHHHHh
Confidence 2 3566666666666666665
No 66
>PRK11595 DNA utilization protein GntX; Provisional
Probab=99.36 E-value=6.5e-12 Score=107.70 Aligned_cols=121 Identities=15% Similarity=0.100 Sum_probs=78.6
Q ss_pred ccCCHHHHHHHHHHHHHHHhh-----cCCCccEEEecCCC-------CHHHHHHH----HHHcCCCEE---EEeecc--C
Q psy1963 43 IISYPKLMDYLSTIINDYLNI-----NKISARTVCGVPYT-------ALPIATAV----SVKYNIPML---IRRKDV--K 101 (250)
Q Consensus 43 ~~~~p~~~~~l~~~la~~i~~-----~~~~~d~Ivgv~~~-------Gi~~a~~l----A~~l~ip~~---~~rk~~--k 101 (250)
+.+++.+.+.+++.|++.+.. ....+|.|++||.+ |++.+..+ |..+++|+. ..|... +
T Consensus 83 y~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~d~ivpVPl~~~r~~~RGfnq~~~la~~la~~~~~~~~~~~l~r~~~~~~ 162 (227)
T PRK11595 83 FSRRSELASVLARLLLLEWLQARRSTGLQKPDRIISVPLHQRRHWRRGFNQSDLLCRPLARWLGCDYDSEALTRTRATAT 162 (227)
T ss_pred HCccHHHHHHHHHHHHHHHHHHhhhhcccCCCeEEecCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCcccceEEecCCCC
Confidence 567888888888888766432 11357999999975 88765544 555788863 333221 1
Q ss_pred CcCccccccceeecCCcccccccccccceEeccccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEEE
Q psy1963 102 TYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIV 175 (250)
Q Consensus 102 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vlv 175 (250)
+++.. ..++.. .......+.+. .+|++|||||||+|||+|+.++++.|+++|+..+.++++.
T Consensus 163 q~~l~--~~~R~~---------n~~~~f~~~~~-~~~~~vllvDDv~tTG~Tl~~~~~~L~~~g~~~V~~~~la 224 (227)
T PRK11595 163 QHFLS--ARLRKR---------NLKNAFRLELP-VQGQHMAIVDDVVTTGSTVAEIAQLLLRNGAASVQVWCLC 224 (227)
T ss_pred cccCC--HHHHhh---------hhhhhhccCCC-CCCCEEEEEeeeecchHHHHHHHHHHHHcCCcEEEEEEEE
Confidence 11111 011100 00000111222 5799999999999999999999999999999999998875
No 67
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=99.31 E-value=2.7e-11 Score=104.15 Aligned_cols=120 Identities=14% Similarity=0.153 Sum_probs=84.2
Q ss_pred cccCCHHHHHHHHHHHHHHHhhc-CCCccEEEecCCCCHHHHHHHHHHcC---------CC--E---EEEeeccCCcCcc
Q psy1963 42 GIISYPKLMDYLSTIINDYLNIN-KISARTVCGVPYTALPIATAVSVKYN---------IP--M---LIRRKDVKTYGTK 106 (250)
Q Consensus 42 ~~~~~p~~~~~l~~~la~~i~~~-~~~~d~Ivgv~~~Gi~~a~~lA~~l~---------ip--~---~~~rk~~k~~g~~ 106 (250)
.++-..+..+...+.||..|.+. +.+..+|+|+..||++++..|.+.++ +| . -+++- ++|+..
T Consensus 55 ~vLis~~~I~~rI~~LA~~I~~dy~~~~~vilgILkGg~~FaadL~~~L~~~~~~~~~~~~~~~~~~dfi~v--sSY~~~ 132 (241)
T PTZ00149 55 KILLPNGLIKDRVEKLAYDIKQVYGNEELHILCILKGSRGFFSALVDYLNRIHNYSSTESPKPPYQEHYVRV--KSYCND 132 (241)
T ss_pred EEEeCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCCCHHHHHHHHHHHhhhhhccccccCcccccccEEEE--EEccCC
Confidence 33445555566667788888765 34567999999999999999998886 22 2 22332 223211
Q ss_pred ccccceeecCCcccccccccccceEec--cccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEEEeCCc
Q psy1963 107 KLIEGVYEKGDKRKDVKTYGTKKLIEG--VYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQ 179 (250)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~i~g--~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~~ 179 (250)
...+.. ..... ...+|++||||||+++||.|+.++++.|++.|++.+.+++++++..
T Consensus 133 -~s~g~v---------------~i~~~~~~~l~gk~VLIVDDIidTG~Tl~~~~~~L~~~g~~~V~va~L~~K~~ 191 (241)
T PTZ00149 133 -ESTGKL---------------EIVSDDLSCLKDKHVLIVEDIIDTGNTLVKFCEYLKKFEPKTIRIATLFEKRT 191 (241)
T ss_pred -CcCCce---------------EEecccccccCCCEEEEEEeEeChHHHHHHHHHHHHhcCCCEEEEEEEEecCc
Confidence 011110 11111 1358999999999999999999999999999999999999998873
No 68
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=99.28 E-value=1.3e-10 Score=104.24 Aligned_cols=151 Identities=15% Similarity=0.105 Sum_probs=101.5
Q ss_pred HHHHHHHHHH-----CCceeeCCccccCccccCeEeecccccCCHHHHHHHHHHHHHHHhhcC-CCccEEEecCCCCHHH
Q psy1963 8 LNHLCLQLFD-----IDALKFGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNINK-ISARTVCGVPYTALPI 81 (250)
Q Consensus 8 ~~~~~~~l~~-----~~~~~~g~f~l~sG~~s~~y~d~~~~~~~p~~~~~l~~~la~~i~~~~-~~~d~Ivgv~~~Gi~~ 81 (250)
.+-+++.|.. .|+-++=.+.+++.+...|| +.. + ++ +.......+++.+.+.. .+-.+|++++.||..+
T Consensus 123 ak~vA~ll~~~~~~~~g~d~vitvDlH~~~~~~fF-~~~-~--~~-l~l~a~~~l~~~i~~~~~~~~~vvVsPD~Ga~~r 197 (326)
T PLN02297 123 AFTLARILSNIPISRGGPTSLVIFDIHALQERFYF-GDN-V--LP-CFESGIPLLKKRLQQLPDSDNIVIAFPDDGAWKR 197 (326)
T ss_pred HHHHHHHHhcccccccCCCEEEEEeCCChHHCCcc-CCc-c--cc-hhhccHHHHHHHHHhccccCCcEEEecCccHHHH
Confidence 4557776666 34444445777777766666 321 1 11 11112334555554331 2335899999999988
Q ss_pred HHHHHHHcCCCEEEEeeccCCcCccccccceeecCCcccccccccccceEeccccCCCEEEEEeccccccHHHHHHHHHH
Q psy1963 82 ATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDL 161 (250)
Q Consensus 82 a~~lA~~l~ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L 161 (250)
+..++ .+.|+++.+|.+ .|.. .. .....+ ..+|++|+||||+++||+|+.++++.|
T Consensus 198 a~~~a--~~~~~~~~~K~R--~g~~-----~~--------------~~~~~~-dv~gr~vlIVDDIidTG~Tl~~aa~~L 253 (326)
T PLN02297 198 FHKQF--EHFPMVVCTKVR--EGDK-----RI--------------VRIKEG-NPAGRHVVIVDDLVQSGGTLIECQKVL 253 (326)
T ss_pred HHHHc--CCCCEEEEEeEE--CCCc-----eE--------------EEeccc-ccCCCeEEEEecccCcHHHHHHHHHHH
Confidence 77766 689999998864 2322 00 011223 358999999999999999999999999
Q ss_pred HhCCCeEEEEEEEEeCC-ccHHHHHHh
Q psy1963 162 KSVGIVVTDVLTIVDRE-QGGRANLKQ 187 (250)
Q Consensus 162 ~~~Ga~vv~~~vlvd~~-~~~~~~l~~ 187 (250)
++.|++.+.+++.+... .++.++|.+
T Consensus 254 ~~~Ga~~V~~~~THglfs~~a~~~l~~ 280 (326)
T PLN02297 254 AAHGAAKVSAYVTHGVFPNESWERFTH 280 (326)
T ss_pred HHCCCcEEEEEEECcccChhHHHHHHh
Confidence 99999999999988776 456777764
No 69
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.28 E-value=2.8e-11 Score=110.66 Aligned_cols=150 Identities=14% Similarity=0.216 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHHHHHHcCCCEE--EEeeccCCcCccccccceeecCCcccccccc
Q psy1963 48 KLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSVKYNIPML--IRRKDVKTYGTKKLIEGVYEKGDKRKDVKTY 125 (250)
Q Consensus 48 ~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~lA~~l~ip~~--~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~ 125 (250)
..+..+|+.||+.... +.|+|++||.+|.+.|...|+.+|+|+. ++|. +.-|...+.+.+-.+....+
T Consensus 267 ~~R~~mG~~La~e~~~---eaDvVipVPDSg~~aAig~A~~sGiPy~~GliKN--rYvgRTFI~P~q~~R~~~Vr----- 336 (470)
T COG0034 267 EARKRMGEKLAEEIPV---EADVVIPVPDSGRPAAIGYARASGIPYEEGLIKN--RYVGRTFIMPTQELREKGVR----- 336 (470)
T ss_pred HHHHHHHHHHHHhCCc---cccEEEecCCCChHHHHHHHHHhCCchhhccccc--cccceeeeCCcHHHHHhhhh-----
Confidence 3566888888887764 4799999999999999999999999974 3443 23454433333211000000
Q ss_pred cccceEeccccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEEE-----------eCCcc--------HHHHH-
Q psy1963 126 GTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIV-----------DREQG--------GRANL- 185 (250)
Q Consensus 126 ~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vlv-----------d~~~~--------~~~~l- 185 (250)
.+.+.++. ..+||||+||||-|-.|+|++..+++||++||+.|.+.+.- |.... ..+.+
T Consensus 337 ~KLnpvr~-~v~GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvriasP~i~~Pc~YGID~pt~~eLIA~~~~~eeI~ 415 (470)
T COG0034 337 LKLNPVRE-VVKGKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRIASPPIRYPCFYGIDMPTREELIAANRTVEEIR 415 (470)
T ss_pred hhcCchHH-HhCCCeEEEEccccccCccHHHHHHHHHHhCCCEEEEEecCCCccCCCccccCCCCHHHHhhCCCCHHHHH
Confidence 00123333 36899999999999999999999999999999999887652 22210 11222
Q ss_pred HhcCCcEEEeecHHHHHHHHHHc
Q psy1963 186 KQLGYTLHSLFTLSSVMDILYKA 208 (250)
Q Consensus 186 ~~~g~~v~sl~~~~~l~~~~~~~ 208 (250)
+..|.+....++++++.+.....
T Consensus 416 ~~IgaDSL~yLslegL~~aig~~ 438 (470)
T COG0034 416 KAIGADSLAYLSLEGLIKAIGRD 438 (470)
T ss_pred HHhCCCceeeecHHHHHHHhCCC
Confidence 24788888888888888887654
No 70
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.12 E-value=1.4e-09 Score=86.85 Aligned_cols=117 Identities=16% Similarity=0.294 Sum_probs=77.5
Q ss_pred CHHHHHHHHHHHHHHHhhc--CCCccEEEecCCCCHHHHHHHHHHc------CCCEE-----EEeeccCCcCccccccce
Q psy1963 46 YPKLMDYLSTIINDYLNIN--KISARTVCGVPYTALPIATAVSVKY------NIPML-----IRRKDVKTYGTKKLIEGV 112 (250)
Q Consensus 46 ~p~~~~~l~~~la~~i~~~--~~~~d~Ivgv~~~Gi~~a~~lA~~l------~ip~~-----~~rk~~k~~g~~~~~~~~ 112 (250)
+++-+......++..+.+. +.+--+++|+.++|+++|..++..+ ++|+. +.|..-...+..
T Consensus 8 d~~~i~RtitRia~eIiErnk~~~~~vlvGIktrGv~lA~rl~~~i~~~Eg~~vp~g~lDIt~yRDDl~~~~~~------ 81 (179)
T COG2065 8 DEAAIRRTITRIAHEIIERNKGLDNLVLVGIKTRGVPLAERLAERIEELEGIEVPVGELDITLYRDDLTQKGPL------ 81 (179)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCceEEEeEecCCHHHHHHHHHHHHHHhCCCCCeeeEEeEEeechhhhcCcc------
Confidence 4444444444555555544 3344478999999999999999985 35653 233321111100
Q ss_pred eecCCcccccccccccceEeccccCCCEEEEEeccccccHHHHHHHHHHHhCC-CeEEEEEEEEeCCc
Q psy1963 113 YEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVG-IVVTDVLTIVDREQ 179 (250)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~G-a~vv~~~vlvd~~~ 179 (250)
...+. ...+. ....||+|+|||||+-||.|+++|++.|...| +..+..+|++||+.
T Consensus 82 ---------~p~~~-~t~~~-~di~~k~VILVDDVLytGRTIRAAldal~d~GRPa~I~LavLVDRGH 138 (179)
T COG2065 82 ---------RPQAK-TTILP-FDITGKRVILVDDVLYTGRTIRAALDALVDYGRPAKIQLAVLVDRGH 138 (179)
T ss_pred ---------CCccc-CccCc-ccccCCEEEEEeeecccCccHHHHHHHHHhcCCcceEEEEEEEcCCC
Confidence 00000 01111 12589999999999999999999999999998 68999999999985
No 71
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=99.00 E-value=4.6e-09 Score=86.43 Aligned_cols=120 Identities=13% Similarity=0.157 Sum_probs=74.4
Q ss_pred cEEEecCCCCHHHHHHHHHHcCCCEEEEeeccCCcCccccccceeecCCc----cc------c--cccccccceEecccc
Q psy1963 69 RTVCGVPYTALPIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDK----RK------D--VKTYGTKKLIEGVYE 136 (250)
Q Consensus 69 d~Ivgv~~~Gi~~a~~lA~~l~ip~~~~rk~~k~~g~~~~~~~~~~~~~~----~~------~--~~~~~~~~~i~g~~~ 136 (250)
-+|++...||..-|+.+|.+|++.+.++.++++..... ...++...+.. .+ . ..+. ....+.|. .
T Consensus 5 aVIVa~~~g~akRAts~Ad~L~l~~avih~e~~~~~~~-~~~~~~s~p~~~~~~~~~~~~~~~~~~~e~-~~~~vVGD-V 81 (184)
T PF14572_consen 5 AVIVAKDPGGAKRATSFADRLRLGFAVIHGERRDSESD-GVDGRHSPPMSRSAAVSSSEEIPEMTPKEK-PPMNVVGD-V 81 (184)
T ss_dssp EEEEESSGGGHHHHHHHHHHCT-EEEEE--------------------------------------------EEEES---
T ss_pred CEEEeCCCCchHhHHHHHHHhCCCeeEecCcccccccc-ccccccCCCccccccccccchhhhcccCcc-cceEEEEE-c
Confidence 57899999999999999999999999988875432111 01111111100 00 0 0000 01233454 4
Q ss_pred CCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEEEeCC-ccHHHHHHhcCCc
Q psy1963 137 KGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDRE-QGGRANLKQLGYT 191 (250)
Q Consensus 137 ~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~-~~~~~~l~~~g~~ 191 (250)
+|+.++||||++.||+|+.++++.|++.||..+.+++-+... .++.+.|++..+.
T Consensus 82 ~gk~~IIvDDiIdtg~Tl~~aA~~Lk~~GA~~V~~~aTHgvfs~~A~~~l~~s~Id 137 (184)
T PF14572_consen 82 KGKICIIVDDIIDTGGTLIKAAELLKERGAKKVYACATHGVFSGDAPERLEESPID 137 (184)
T ss_dssp TTSEEEEEEEEESSTHHHHHHHHHHHHTTESEEEEEEEEE---TTHHHHHHHSSES
T ss_pred cCCeEeeecccccchHHHHHHHHHHHHcCCCEEEEEEeCcccCchHHHHHhhcCCe
Confidence 899999999999999999999999999999999888888776 4677888766544
No 72
>KOG1448|consensus
Probab=98.92 E-value=1.8e-08 Score=87.81 Aligned_cols=166 Identities=9% Similarity=0.092 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHCCceeeCCccccCccccCeEee-cccccCCHHHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHH
Q psy1963 5 QEKLNHLCLQLFDIDALKFGDFVTKVGIKTPVYLD-LRGIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIAT 83 (250)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~g~f~l~sG~~s~~y~d-~~~~~~~p~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~ 83 (250)
....+-++..|...|+-..=.+.|+.++...||.+ ...++..|..+..+ ...+.+. +.-+|+.+..||.--+.
T Consensus 106 ~i~aklVanlls~aG~dhvItmDlHa~Q~qgfF~ipVdnly~~p~~l~~i----r~~~~~~--~~~vivSPdaGgaKR~~ 179 (316)
T KOG1448|consen 106 PILAKLVANLLSSAGADHVITMDLHASQIQGFFDIPVDNLYAEPAVLNYI----RENIPDS--ENAVIVSPDAGGAKRVT 179 (316)
T ss_pred hHHHHHHHhhhhccCCceEEEecccchhhCceeeccchhhccchHHHHHH----HhhCCCc--cceEEECCCcchhhhhH
Confidence 45566788888888865555577777776655533 33355666665443 2223322 34578888899999999
Q ss_pred HHHHHcCCCEEEEeeccC-CcCccccccceeecCCcccccccccccceEeccccCCCEEEEEeccccccHHHHHHHHHHH
Q psy1963 84 AVSVKYNIPMLIRRKDVK-TYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLK 162 (250)
Q Consensus 84 ~lA~~l~ip~~~~rk~~k-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~ 162 (250)
.+|..|+.-++.+.++++ .++-. +...+.|. .+||.++||||++.|++|+..+.+.|.
T Consensus 180 s~ad~l~~~fali~ker~k~~~v~--------------------~~m~LVGD-v~gkvailVDDm~dt~GTl~~aa~~L~ 238 (316)
T KOG1448|consen 180 SLADRLNLDFALIHKERRKANEVD--------------------IRMVLVGD-VKGKVAILVDDMADTCGTLIKAADKLL 238 (316)
T ss_pred HHHHhhcchhhhhhhhhhcccccc--------------------eEEEEEec-cCCcEEEEecccccccchHHHHHHHHH
Confidence 999999998877665532 22111 01445565 489999999999999999999999999
Q ss_pred hCCCeEEEEEEEEeCCc-cHHHHHHhc-CCcEEEeec
Q psy1963 163 SVGIVVTDVLTIVDREQ-GGRANLKQL-GYTLHSLFT 197 (250)
Q Consensus 163 ~~Ga~vv~~~vlvd~~~-~~~~~l~~~-g~~v~sl~~ 197 (250)
+.||+.+.+++-+.-.. .+.+++... +.++....+
T Consensus 239 ~~GA~kV~a~~THgVfs~~a~er~~~s~~~~~vvtnt 275 (316)
T KOG1448|consen 239 EHGAKKVYAIVTHGVFSGPAIERLNESALDRVVVTNT 275 (316)
T ss_pred hcCCceEEEEEcceeccccHHHHhhhcccceEEEEEe
Confidence 99999998888777763 556776543 334444444
No 73
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=98.91 E-value=2.1e-08 Score=84.93 Aligned_cols=100 Identities=16% Similarity=0.142 Sum_probs=71.5
Q ss_pred cEEEecCCCCHHHHHHHHHHcC-CCEEEEeeccCCcCccccccceeecCCcccccccccccceEeccccCCCEEEEEecc
Q psy1963 69 RTVCGVPYTALPIATAVSVKYN-IPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDV 147 (250)
Q Consensus 69 d~Ivgv~~~Gi~~a~~lA~~l~-ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDv 147 (250)
-+++++.++|++++..+++.++ .++.++...+.. ... ....+ | ..+.+ ..+|++||||||+
T Consensus 72 ~vvV~IlrgG~~~~~~l~~~l~~~~~~~i~~~r~~-~t~--~~~~~-----------~---~~lp~-~i~~~~VllvDd~ 133 (209)
T PRK00129 72 LVIVPILRAGLGMVDGVLKLIPSARVGHIGLYRDE-ETL--EPVEY-----------Y---VKLPE-DIDERTVIVVDPM 133 (209)
T ss_pred EEEEEEeCCCHHHHHHHHHhCCcCeeeeEEEEeCC-CCC--CCEEE-----------E---eeCCC-cCCCCEEEEECCc
Confidence 3788999999999999999987 455444332211 110 00000 0 11112 2478999999999
Q ss_pred ccccHHHHHHHHHHHhCCCeEEEEEEEEeCCccHHHHHHh
Q psy1963 148 VTSGSSILETINDLKSVGIVVTDVLTIVDREQGGRANLKQ 187 (250)
Q Consensus 148 itTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~~~~~~~l~~ 187 (250)
++||+|+.++++.|++.|++.+.+++++... .+.+++.+
T Consensus 134 laTG~Tl~~ai~~L~~~G~~~I~~~~ll~~~-~gl~~l~~ 172 (209)
T PRK00129 134 LATGGSAIAAIDLLKKRGAKNIKVLCLVAAP-EGIKALEE 172 (209)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEEEecCH-HHHHHHHH
Confidence 9999999999999999999999898888876 55666654
No 74
>KOG0572|consensus
Probab=98.90 E-value=1e-08 Score=91.90 Aligned_cols=148 Identities=12% Similarity=0.144 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHHHHHHcCCCEE--EEeeccCCcCccccccceeecCCccccccccc
Q psy1963 49 LMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSVKYNIPML--IRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYG 126 (250)
Q Consensus 49 ~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~lA~~l~ip~~--~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~ 126 (250)
.+..+|+.||.. ...+.|+|+.||.+|..-|...|...|+|+. +.|. +.-|...+.+....+....+.
T Consensus 276 ~R~~~G~~LA~e---~P~d~DvVi~VPdS~~~aAlgyA~~sG~py~e~l~rn--rYvGRTFI~P~q~iR~~~V~~----- 345 (474)
T KOG0572|consen 276 VRLQCGEQLATE---APVDADVVIPVPDSGTTAALGYAAKSGLPYQEVLIRN--RYVGRTFIEPNQRIRQLGVKK----- 345 (474)
T ss_pred HHHHHHhHhhhc---CCcccceEEecCCchhHHHHHHHHHhCCchhhhhhhc--ccccceecCccHHHHHhhhhh-----
Confidence 344567777662 2357899999999999999999999999985 4444 334544333222110000000
Q ss_pred ccceEeccccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEEEeC-----------Cc--------cHHHHHH-
Q psy1963 127 TKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDR-----------EQ--------GGRANLK- 186 (250)
Q Consensus 127 ~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~-----------~~--------~~~~~l~- 186 (250)
++..+++. ..|||||||||-|--|+|+...+++||++||+.|...+.... .. ...+.+.
T Consensus 346 Kl~~l~~~-~~GKrvvlVDDSIVRGtTs~~IVkmlreaGAkeVh~riAsPpi~~pc~yGIdipt~keLIA~~~t~deiae 424 (474)
T KOG0572|consen 346 KLGPLRQN-FEGKRVVLVDDSIVRGTTSSPIVKMLREAGAKEVHIRIASPPIKYPCYYGIDIPTSKELIANKLTVDEIAE 424 (474)
T ss_pred hcccchhh-cCCceEEEEecceeccCchHHHHHHHHHcCCcEEEEEecCCcccccceeecCCCCHHHHHhcCCCHHHHHH
Confidence 11233333 589999999999999999999999999999999887765222 10 0112222
Q ss_pred hcCCcEEEeecHHHHHHHHHH
Q psy1963 187 QLGYTLHSLFTLSSVMDILYK 207 (250)
Q Consensus 187 ~~g~~v~sl~~~~~l~~~~~~ 207 (250)
-.|.+-...+++++|++....
T Consensus 425 ~igadsv~ylsve~Lv~~~~~ 445 (474)
T KOG0572|consen 425 HIGADSVAYLSVEGLVDSVQT 445 (474)
T ss_pred HhCCCeeEEeeHHHHHHhhcc
Confidence 257777788888888877753
No 75
>KOG3367|consensus
Probab=98.84 E-value=3.9e-08 Score=79.17 Aligned_cols=127 Identities=17% Similarity=0.211 Sum_probs=86.1
Q ss_pred eEeecccccCCHHHHHHHHHHHHHHHhhc-CCCccEEEecCCCCHHHHHHHHHHc-C------CCEEEEeeccCCcCccc
Q psy1963 36 VYLDLRGIISYPKLMDYLSTIINDYLNIN-KISARTVCGVPYTALPIATAVSVKY-N------IPMLIRRKDVKTYGTKK 107 (250)
Q Consensus 36 ~y~d~~~~~~~p~~~~~l~~~la~~i~~~-~~~~d~Ivgv~~~Gi~~a~~lA~~l-~------ip~~~~rk~~k~~g~~~ 107 (250)
|+=|++.++--.-+...-.+.||..+.+. +..+-+++|+..||.-+-+.+-+++ + +|+.+..-+.|+|+.+
T Consensus 28 y~~Dls~v~ip~gli~dr~~rlakDi~~~~g~~~i~~lcVlkG~ykF~adLve~l~n~~s~~~~pmtvDFIR~kSY~n~- 106 (216)
T KOG3367|consen 28 YTGDLSGVVIPHGLIRDRVERLAKDIMKEIGNKPIIFLCVLKGGYKFFADLVERLKNRNSDRPLPMTVDFIRAKSYCND- 106 (216)
T ss_pred ecccccccccccchhhhHHHHhhhhhhhccCCCceEEEEEecchhHHHHHHHHHHhhcccCCCcceeeeeeehhhhcCC-
Confidence 34454433322234444556667666554 4456789999999998777666663 4 6766544444666544
Q ss_pred cccceeecCCcccccccccccceEecc---ccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEEEeCC
Q psy1963 108 LIEGVYEKGDKRKDVKTYGTKKLIEGV---YEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDRE 178 (250)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~i~g~---~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~ 178 (250)
...+. ...+.+. -+.||+||||||++.||+|+...+..+++.+++-+.++.++++.
T Consensus 107 ~stg~---------------iqiig~d~l~~ltgK~VliVeDIvdTGrTl~~Lls~~~~~k~~~v~vasLL~Kr 165 (216)
T KOG3367|consen 107 QSTGD---------------IQIIGGDDLSTLTGKNVLIVEDIVDTGRTLSTLLSHMKAYKPSMVKVASLLVKR 165 (216)
T ss_pred cccCC---------------ceeecCCCHHHhcCCcEEEEEeeccccchHHHHHHHHHhcCccceeeeeecccc
Confidence 11111 1333332 26899999999999999999999999999999999999888775
No 76
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=98.79 E-value=6.4e-08 Score=81.91 Aligned_cols=99 Identities=14% Similarity=0.156 Sum_probs=69.8
Q ss_pred cEEEecCCCCHHHHHHHHHHcC-CCEEEEeeccCCcCccccccceeecCCcccccccccccceEeccccCCCEEEEEecc
Q psy1963 69 RTVCGVPYTALPIATAVSVKYN-IPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDV 147 (250)
Q Consensus 69 d~Ivgv~~~Gi~~a~~lA~~l~-ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDv 147 (250)
-+++++-++|++++..+++.+. .++..+...+.. ... ....+ | ..+. ....|++||||||+
T Consensus 70 i~~V~ILrgg~~~~~~l~~~l~~~~v~~i~~~r~~-~t~--~~~~~-----------~---~~lp-~~i~~~~VllvDd~ 131 (207)
T TIGR01091 70 IVLVPILRAGLGMVDGVLKLIPEAKVGHVGAYRNE-ETL--KPVPY-----------Y---SKLP-EDIDERTVIVLDPM 131 (207)
T ss_pred EEEEEEeCCcHHHHHHHHHhCCcCceeEEEEEeCC-CCC--CCEEE-----------E---ecCC-CCCCCCEEEEECCC
Confidence 4678999999999999999986 455444332111 110 00000 0 1111 12578999999999
Q ss_pred ccccHHHHHHHHHHHhCCCeEEEEEEEEeCCccHHHHHH
Q psy1963 148 VTSGSSILETINDLKSVGIVVTDVLTIVDREQGGRANLK 186 (250)
Q Consensus 148 itTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~~~~~~~l~ 186 (250)
++||+|+.++++.|++.|++.+.+++++... .+.+.+.
T Consensus 132 laTG~Tl~~ai~~L~~~G~~~I~v~~ll~~~-~gl~~l~ 169 (207)
T TIGR01091 132 LATGGTMIAALDLLKKRGAKKIKVLSIVAAP-EGIEAVE 169 (207)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEEEecCH-HHHHHHH
Confidence 9999999999999999999988888888877 4566664
No 77
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=98.77 E-value=2.8e-07 Score=76.11 Aligned_cols=148 Identities=17% Similarity=0.178 Sum_probs=95.3
Q ss_pred ccCCHHHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHHHHHHcCCCEEEEeeccC-CcCccccccceeecCCcccc
Q psy1963 43 IISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSVKYNIPMLIRRKDVK-TYGTKKLIEGVYEKGDKRKD 121 (250)
Q Consensus 43 ~~~~p~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~lA~~l~ip~~~~rk~~k-~~g~~~~~~~~~~~~~~~~~ 121 (250)
+..+|.....++..|+..+.+.....-+++|.+..+-.++..++..++-...|....+. -.|.. ..-.+-+....-+.
T Consensus 29 iPv~P~~~~~~~~~La~~~~~~~~~~~lvIGfAETATgLG~~V~~~~~~~~~ylhTTR~~v~~~~-~~~~F~E~HSHAt~ 107 (191)
T PF15609_consen 29 IPVRPSVMRDAGRLLAAQVPEALPGPVLVIGFAETATGLGHGVFDALGAACLYLHTTREPVPGVP-PLLEFEEEHSHATD 107 (191)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEhHHHHHHHHHHHHHhhhccceeeeccccCCCCc-cceeeecccccccc
Confidence 45679999999999999998865567899999999999999999998743334333211 11211 11112221111222
Q ss_pred cccccccceEeccccCCCEEEEEeccccccHHHHHHHHHHHhCCC-eEEEEEEEEeCCcc-HH---HHH-HhcCCcEEE
Q psy1963 122 VKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGI-VVTDVLTIVDREQG-GR---ANL-KQLGYTLHS 194 (250)
Q Consensus 122 ~~~~~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga-~vv~~~vlvd~~~~-~~---~~l-~~~g~~v~s 194 (250)
+.-|.. -...+...+++|+|||-+|||+|+.++++.|++.-+ +.+.++.++|...+ .+ +.+ ++.|+++..
T Consensus 108 h~ly~~---~~~~l~~~~~lVLVDDEiSTG~T~lnli~al~~~~p~~~yvvasL~d~~~~~~~~~~~~~~~~lgi~i~~ 183 (191)
T PF15609_consen 108 HLLYPP---DPDLLRNARTLVLVDDEISTGNTFLNLIRALHAKYPRKRYVVASLLDWRSEEDRARFEALAEELGIPIDV 183 (191)
T ss_pred ceecCC---ChHHhcCCCCEEEEecCccchHHHHHHHHHHHHhCCCceEEEEEEeeCCCHHHHHHHHHHHHHcCCcEEE
Confidence 322210 001234467899999999999999999999999755 45666778898632 22 233 356776543
No 78
>PLN02541 uracil phosphoribosyltransferase
Probab=97.86 E-value=0.00021 Score=61.90 Aligned_cols=50 Identities=20% Similarity=0.413 Sum_probs=40.1
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHhCCCe--EEEEEEEEeCCccHHHHHH
Q psy1963 136 EKGDKCVIIEDVVTSGSSILETINDLKSVGIV--VTDVLTIVDREQGGRANLK 186 (250)
Q Consensus 136 ~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~--vv~~~vlvd~~~~~~~~l~ 186 (250)
.++++|+|+||+++||+|+.++++.|++.|+. .+.+++++.-. .|.+.+.
T Consensus 155 ~~~~~VlllDpmLATGgS~~~ai~~L~~~Gv~~~~I~~v~~ias~-~Gl~~i~ 206 (244)
T PLN02541 155 PEGSRVLVVDPMLATGGTIVAAIDELVSRGASVEQIRVVCAVAAP-PALKKLS 206 (244)
T ss_pred CCCCEEEEECcchhhhHHHHHHHHHHHHcCCCcccEEEEEEEECH-HHHHHHH
Confidence 35679999999999999999999999999986 55556666665 4565554
No 79
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=97.42 E-value=0.0054 Score=51.84 Aligned_cols=105 Identities=14% Similarity=0.236 Sum_probs=66.1
Q ss_pred cEEEecCCCCHHHHHHHHHHcC-CCEE--EEeeccCCcCccccccceeecCCcccccccccccceEeccccCCCEEEEEe
Q psy1963 69 RTVCGVPYTALPIATAVSVKYN-IPML--IRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIE 145 (250)
Q Consensus 69 d~Ivgv~~~Gi~~a~~lA~~l~-ip~~--~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVD 145 (250)
-+++++-++|.++...+...+- .++. ..++..+. ... ..| | ..+... .++++|+|+|
T Consensus 69 i~~V~IlRaG~~m~~~~~~~~p~a~~g~i~i~r~~~t-~~p----~~~-----------y---~~LP~~-i~~~~VillD 128 (207)
T PF14681_consen 69 ICIVPILRAGLPMLEGFREVFPDARVGHIGIQRDEET-LEP----VLY-----------Y---NKLPED-IENRKVILLD 128 (207)
T ss_dssp EEEEEETTTHHHHHHHHHHHSTTSEEEEEEEEEETTT-SSE----EEE-----------E---EE--TT-GTTSEEEEEE
T ss_pred EEEEEEeCCcHHHHHHHHHhCCCcceEEEEEEEcCCc-cce----eee-----------H---hhCCCC-ccCCEEEEEe
Confidence 3677888999999998888863 4433 23332121 110 011 1 222222 3789999999
Q ss_pred ccccccHHHHHHHHHHHhCCC--eEEEEEEEEeCCccHHHHHH-h-cCCcEEE
Q psy1963 146 DVVTSGSSILETINDLKSVGI--VVTDVLTIVDREQGGRANLK-Q-LGYTLHS 194 (250)
Q Consensus 146 DvitTG~Tl~~a~~~L~~~Ga--~vv~~~vlvd~~~~~~~~l~-~-~g~~v~s 194 (250)
-+++||+|+..+++.|++.|. +.+.++.++.-.+ |.+++. + -.++++.
T Consensus 129 pmlaTG~s~~~ai~~L~~~G~~~~~I~~v~~ias~~-Gl~~l~~~~P~v~I~t 180 (207)
T PF14681_consen 129 PMLATGGSAIAAIEILKEHGVPEENIIIVSVIASPE-GLERLLKAFPDVRIYT 180 (207)
T ss_dssp SEESSSHHHHHHHHHHHHTTG-GGEEEEEEEEEEHH-HHHHHHHHSTTSEEEE
T ss_pred ccccchhhHHHHHHHHHHcCCCcceEEEEEEEecHH-HHHHHHHhCCCeEEEE
Confidence 999999999999999999986 4555565555553 555553 2 2444444
No 80
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=97.30 E-value=0.0025 Score=53.64 Aligned_cols=103 Identities=17% Similarity=0.256 Sum_probs=70.1
Q ss_pred EEEecCCCCHHHHHHHHHHcC-CC--EE-EEeeccCCcCccccccceeecCCcccccccccccceEeccccCCCEEEEEe
Q psy1963 70 TVCGVPYTALPIATAVSVKYN-IP--ML-IRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIE 145 (250)
Q Consensus 70 ~Ivgv~~~Gi~~a~~lA~~l~-ip--~~-~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVD 145 (250)
+++++-+.|.++...+.+... .+ .+ ..|.+ . .+.. ..| | .++.+ ..+++.|+|+|
T Consensus 73 ~~V~ILRAGl~m~~gl~~~~P~a~vG~ig~~Rde-e-t~~p----~~y-----------y--~KLP~--~~~~~~viv~D 131 (210)
T COG0035 73 VIVPILRAGLGMVEGLLKLIPSARVGHIGIYRDE-E-TLEP----VLY-----------Y--EKLPE--DIDERTVIVLD 131 (210)
T ss_pred EEEEEeeccccHHHHHHHhCCcceEEEEEEEecC-c-cCce----ehh-----------H--HhCCC--cccCCeEEEEC
Confidence 457777899999888888742 22 22 23332 1 1110 111 0 03332 35789999999
Q ss_pred ccccccHHHHHHHHHHHhC-CCeEEEEEEEEeCCccHHHHHHh--cCCcEEE
Q psy1963 146 DVVTSGSSILETINDLKSV-GIVVTDVLTIVDREQGGRANLKQ--LGYTLHS 194 (250)
Q Consensus 146 DvitTG~Tl~~a~~~L~~~-Ga~vv~~~vlvd~~~~~~~~l~~--~g~~v~s 194 (250)
=.++||+|+..|++.|++. |++.+.+++++..++ |.+++.+ -+++++.
T Consensus 132 PMLATG~s~i~ai~~L~~~G~~~~I~~v~~vAape-Gi~~v~~~~p~v~I~t 182 (210)
T COG0035 132 PMLATGGSAIAAIDLLKKRGGPKNIKVVSLVAAPE-GIKAVEKAHPDVEIYT 182 (210)
T ss_pred chhhccHhHHHHHHHHHHhCCCceEEEEEEEecHH-HHHHHHHhCCCCeEEE
Confidence 9999999999999999999 888999999998884 4555654 4566554
No 81
>KOG1503|consensus
Probab=96.77 E-value=0.046 Score=46.95 Aligned_cols=173 Identities=10% Similarity=0.078 Sum_probs=100.2
Q ss_pred HHHHHHHHHCCceeeCCccccCccccCeEeecc--cccCCHHHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHHHH
Q psy1963 9 NHLCLQLFDIDALKFGDFVTKVGIKTPVYLDLR--GIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVS 86 (250)
Q Consensus 9 ~~~~~~l~~~~~~~~g~f~l~sG~~s~~y~d~~--~~~~~p~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~lA 86 (250)
+.++.-+-+.|+-..-...|.......|| ++. .+-..|-+++ .+.+.+.++ .-.+|++-.-+...-|...|
T Consensus 114 klla~mmckaglthlitmdlhqkeiqgff-~~pvdnlraspfllq----yiqe~ipdy--rnavivaksp~~akka~sya 186 (354)
T KOG1503|consen 114 KLLASMMCKAGLTHLITMDLHQKEIQGFF-SIPVDNLRASPFLLQ----YIQEEIPDY--RNAVIVAKSPGVAKKAQSYA 186 (354)
T ss_pred HHHHHHHHhcccceEEeehhhhHhhccee-cccccccccCHHHHH----HHHHhCccc--cceEEEecCcchhhHHHhHH
Confidence 45677777777766655555544444443 432 1223343332 223333333 23466766666677899999
Q ss_pred HHcCCCEEEEeeccCCcCccccccceeecCCccc----cccccc------c-cceEeccccCCCEEEEEeccccccHHHH
Q psy1963 87 VKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRK----DVKTYG------T-KKLIEGVYEKGDKCVIIEDVVTSGSSIL 155 (250)
Q Consensus 87 ~~l~ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~----~~~~~~------~-~~~i~g~~~~Gk~VlIVDDvitTG~Tl~ 155 (250)
.+|.+.+..+.-+.+.. +.....++++.+-..+ ...+.. + -..+.|. ..|+-.++|||+++.-.+..
T Consensus 187 erlrlglavihge~k~~-e~d~~dgr~spp~~~~~t~~~~~~lp~~~~k~kppltvvgd-vggriaimvddiiddvqsfv 264 (354)
T KOG1503|consen 187 ERLRLGLAVIHGEQKDT-ESDLVDGRHSPPPVVTATTHPSLELPAQISKEKPPLTVVGD-VGGRIAIMVDDIIDDVQSFV 264 (354)
T ss_pred HHHhhceeEeecccccc-ccccccCCcCCCCccccccCccccCchhhcccCCCeEEEec-cCceEEEEehhhHHhHHHHH
Confidence 99988888877665542 2223334444331111 011110 0 0122233 47888999999999999999
Q ss_pred HHHHHHHhCCCeEEEEEEEEeCC-ccHHHHHHhcCC
Q psy1963 156 ETINDLKSVGIVVTDVLTIVDRE-QGGRANLKQLGY 190 (250)
Q Consensus 156 ~a~~~L~~~Ga~vv~~~vlvd~~-~~~~~~l~~~g~ 190 (250)
+|++.|++.||-.+.+.+-.... ..+-..|++..+
T Consensus 265 aaae~lkergaykiyv~athgllssdapr~lees~i 300 (354)
T KOG1503|consen 265 AAAEVLKERGAYKIYVMATHGLLSSDAPRLLEESPI 300 (354)
T ss_pred HHHHHHHhcCceEEEEEeecccccccchhhhhcCCC
Confidence 99999999999887776655443 334444554433
No 82
>PF15610 PRTase_3: PRTase ComF-like
Probab=95.54 E-value=0.17 Score=44.24 Aligned_cols=126 Identities=16% Similarity=0.169 Sum_probs=71.9
Q ss_pred ccCCHHHHHHHHHHHHHHHhhcC----CCccEEEecCC--CCHHHHHHHH-----HH-------cCCCEEEEeeccC---
Q psy1963 43 IISYPKLMDYLSTIINDYLNINK----ISARTVCGVPY--TALPIATAVS-----VK-------YNIPMLIRRKDVK--- 101 (250)
Q Consensus 43 ~~~~p~~~~~l~~~la~~i~~~~----~~~d~Ivgv~~--~Gi~~a~~lA-----~~-------l~ip~~~~rk~~k--- 101 (250)
-.+|....+..|..|++.+-+.. ..-|.|+.+++ ..+|-|+-.- .. .|.|-+..-|-.+
T Consensus 28 KfGd~~~A~~fg~~La~~fi~~~~~~~~~~d~iV~~~Sp~~~IPTAsn~L~~~Fv~~LNr~L~~~~~~~~~~~ki~R~~t 107 (274)
T PF15610_consen 28 KFGDDRVAEQFGRELADGFIAQFSNALLTHDQIVMMPSPYRSIPTASNVLCDHFVKELNRHLAHNGAPPVIEVKIHRNQT 107 (274)
T ss_pred ecCCHHHHHHHHHHHHHHHHHhhHhhhccCceEEEecCccccCccHHHHHHHHHHHHHHHHHHHcCCCcceEeeeccccC
Confidence 36889999999999988765431 23354555554 7777444222 22 2455443333221
Q ss_pred ---CcCccccccceeecCCcccccccccccceEeccccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEE-EEEEEEeC
Q psy1963 102 ---TYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVT-DVLTIVDR 177 (250)
Q Consensus 102 ---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv-~~~vlvd~ 177 (250)
.||.- ..+... ....... --+...+..|+.|+++|||-.||++-..+.+.+++.|++-. .....++.
T Consensus 108 y~~DYg~L--s~edR~---~li~nd~----y~ID~~~l~gk~lIflDDIkITGshE~~V~~~~~~~~~~~~~~yly~ael 178 (274)
T PF15610_consen 108 YCEDYGNL--SFEDRK---SLISNDT----YHIDKEFLSGKHLIFLDDIKITGSHEDKVRKILKEYGLENDFIYLYYAEL 178 (274)
T ss_pred cccccccC--CHHhhh---ccccCCc----eEecHHHhCCcEEEEeccEEecCcHHHHHHHHHHHcCccccEEEEEEecc
Confidence 22211 000000 0000000 11222357999999999999999999999999999998643 33444553
No 83
>KOG1017|consensus
Probab=89.84 E-value=1.3 Score=37.08 Aligned_cols=59 Identities=10% Similarity=0.345 Sum_probs=41.2
Q ss_pred CCCEEEEEeccccccHHHHHHHHHHHhCCCe--EEEEEEEEeCCccHHHHHHhcCCcEEEeec
Q psy1963 137 KGDKCVIIEDVVTSGSSILETINDLKSVGIV--VTDVLTIVDREQGGRANLKQLGYTLHSLFT 197 (250)
Q Consensus 137 ~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~--vv~~~vlvd~~~~~~~~l~~~g~~v~sl~~ 197 (250)
-.++||+.=-++.||.|+..|++.|+++|.. .+..+.++....+++...++ +|.+.+++
T Consensus 188 ~sR~VLLmYPi~stGnTV~~Av~VL~EhgVp~s~IiL~sLF~tP~gak~i~~~--fP~itilt 248 (267)
T KOG1017|consen 188 TSRRVLLMYPIISTGNTVCKAVEVLKEHGVPDSNIILVSLFITPTGAKNITRK--FPYITILT 248 (267)
T ss_pred cceeEEEEeeeecCCccHHHHHHHHHHcCCCcccEEEEEeeecchhhHHHHHh--CCeEEEEe
Confidence 4578999999999999999999999999964 33334444444444444343 35555554
No 84
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=82.20 E-value=20 Score=27.30 Aligned_cols=75 Identities=17% Similarity=0.259 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHcCCCEEEEeeccCCcCccccccceeecCCcccccccccccceEeccccCCCEEEEEeccccc-cHH--
Q psy1963 77 TALPIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTS-GSS-- 153 (250)
Q Consensus 77 ~Gi~~a~~lA~~l~ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvitT-G~T-- 153 (250)
+.-.+|..+|..||+++....-..=..|+. + -.+.+. .+|++|+||-+.... -..
T Consensus 8 ~~~~La~~ia~~L~~~~~~~~~~~F~dGE~------~---------------v~i~~~-v~g~dv~iiqs~~~~~nd~lm 65 (116)
T PF13793_consen 8 SSQDLAERIAEALGIPLGKVETKRFPDGET------Y---------------VRIPES-VRGKDVFIIQSTSPPVNDNLM 65 (116)
T ss_dssp SGHHHHHHHHHHTTS-EE-EEEEE-TTS-E------E---------------EEESS---TTSEEEEE---SSSHHHHHH
T ss_pred CCHHHHHHHHHHhCCceeeeEEEEcCCCCE------E---------------EEeccc-ccCCceEEEEecCCchhHHHH
Confidence 445799999999999987654321112321 0 223333 479999999988865 222
Q ss_pred -HHHHHHHHHhCCCeEEEEEE
Q psy1963 154 -ILETINDLKSVGIVVTDVLT 173 (250)
Q Consensus 154 -l~~a~~~L~~~Ga~vv~~~v 173 (250)
+.-++.+++++|++.+.+++
T Consensus 66 eLll~i~a~r~~~a~~i~~Vi 86 (116)
T PF13793_consen 66 ELLLLIDALRRAGAKRITLVI 86 (116)
T ss_dssp HHHHHHHHHHHTTBSEEEEEE
T ss_pred HHHHHHHHHHHcCCcEEEEec
Confidence 33457888999997665443
No 85
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=75.62 E-value=41 Score=30.53 Aligned_cols=82 Identities=9% Similarity=0.083 Sum_probs=50.8
Q ss_pred EEEecCCCCHHHHHHHHHHcCCCEEEEeeccCCcCccccccceeecCCcccccccccccceEeccccCCCEEEEEecccc
Q psy1963 70 TVCGVPYTALPIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVT 149 (250)
Q Consensus 70 ~Ivgv~~~Gi~~a~~lA~~l~ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvit 149 (250)
.|++ -.+.-.+|..+|..+|+++......+=..|+. + -.+... ..|+.|+||-....
T Consensus 23 ~i~~-g~~~~~la~~ia~~lg~~l~~~~~~~FpDGE~------~---------------v~i~~~-vrg~~V~ivqs~~~ 79 (330)
T PRK02812 23 RLFS-GSSNPALAQEVARYLGMDLGPMIRKRFADGEL------Y---------------VQIQES-IRGCDVYLIQPTCA 79 (330)
T ss_pred EEEE-CCCCHHHHHHHHHHhCCCceeeEEEECCCCCE------E---------------EEeCCC-CCCCEEEEECCCCC
Confidence 3444 45567899999999999976543321112321 0 122223 47899999998643
Q ss_pred c-cHHHH---HHHHHHHhCCCeEEEEEEE
Q psy1963 150 S-GSSIL---ETINDLKSVGIVVTDVLTI 174 (250)
Q Consensus 150 T-G~Tl~---~a~~~L~~~Ga~vv~~~vl 174 (250)
. ...+. -++.+++++|++.+.+++.
T Consensus 80 p~nd~l~eLll~~~alr~~ga~ri~~ViP 108 (330)
T PRK02812 80 PVNDHLMELLIMVDACRRASARQITAVIP 108 (330)
T ss_pred CccHHHHHHHHHHHHHHHhCCceEEEEEe
Confidence 3 33444 4578889999986665553
No 86
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=73.76 E-value=16 Score=28.35 Aligned_cols=66 Identities=23% Similarity=0.306 Sum_probs=46.0
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEEEeCCc-cHHHHHHhcCCcEEEeecHHHHHHHHHHc
Q psy1963 136 EKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQ-GGRANLKQLGYTLHSLFTLSSVMDILYKA 208 (250)
Q Consensus 136 ~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~~-~~~~~l~~~g~~v~sl~~~~~l~~~~~~~ 208 (250)
.+|++|+|| -+|++..+++..|.+.|++.+ .+++|.. ++.+..+..+-.-+....++++.+.+.+.
T Consensus 10 l~~~~vlvi----GaGg~ar~v~~~L~~~g~~~i---~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~ 76 (135)
T PF01488_consen 10 LKGKRVLVI----GAGGAARAVAAALAALGAKEI---TIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEA 76 (135)
T ss_dssp GTTSEEEEE----SSSHHHHHHHHHHHHTTSSEE---EEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTE
T ss_pred cCCCEEEEE----CCHHHHHHHHHHHHHcCCCEE---EEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhC
Confidence 478999975 689999999999999999854 4578983 44433344433333555667776666664
No 87
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=73.75 E-value=48 Score=29.59 Aligned_cols=76 Identities=9% Similarity=0.088 Sum_probs=47.6
Q ss_pred CCCHHHHHHHHHHcCCCEEEEeeccCCcCccccccceeecCCcccccccccccceEeccccCCCEEEEEeccccccHHH-
Q psy1963 76 YTALPIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSI- 154 (250)
Q Consensus 76 ~~Gi~~a~~lA~~l~ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl- 154 (250)
.+.-.+|..+|..||+|+.......=..|+. + -.+... ..|+.|+||-....--..+
T Consensus 9 ~~~~~la~~ia~~lg~~~~~~~~~~F~dGE~------~---------------v~i~~~-v~g~~V~ivqs~~~~n~~l~ 66 (301)
T PRK07199 9 PGNEAAAGRLAAALGVEVGRIELHRFPDGES------Y---------------VRLDSP-VAGRTVVLVCSLDRPDEKLL 66 (301)
T ss_pred CCCHHHHHHHHHHhCCceeeeEEEECCCCCE------E---------------EEECCC-CCCCEEEEECCCCCCcHHHH
Confidence 3456899999999999986544321112322 0 122223 4789999998865432323
Q ss_pred --HHHHHHHHhCCCeEEEEEE
Q psy1963 155 --LETINDLKSVGIVVTDVLT 173 (250)
Q Consensus 155 --~~a~~~L~~~Ga~vv~~~v 173 (250)
.-.+.+|+++|++.+.++.
T Consensus 67 elll~~~alr~~~a~~i~~Vi 87 (301)
T PRK07199 67 PLLFAAEAARELGARRVGLVA 87 (301)
T ss_pred HHHHHHHHHHHcCCCeEEEEe
Confidence 3357788999998665554
No 88
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=73.34 E-value=33 Score=27.78 Aligned_cols=84 Identities=13% Similarity=0.203 Sum_probs=49.2
Q ss_pred cCCCEEEEEecccc-ccHHHHHHHHHHHhCCCeEEEEEEEEeCC-ccHHHHHHhcCCcEEEe--ecHHHHHHHHHHcCCC
Q psy1963 136 EKGDKCVIIEDVVT-SGSSILETINDLKSVGIVVTDVLTIVDRE-QGGRANLKQLGYTLHSL--FTLSSVMDILYKANKI 211 (250)
Q Consensus 136 ~~Gk~VlIVDDvit-TG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~-~~~~~~l~~~g~~v~sl--~~~~~l~~~~~~~~~i 211 (250)
..+++|+||||+=. +.....+..+.+++..... +++++... ..-...+...+ .++.+ .+.+++.+++.+.| +
T Consensus 94 ~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~--~~il~~~~~~~l~~~i~sr~-~~~~~~~~~~~~~~~~l~~~g-i 169 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAAANALLKTLEEPPPNT--LFILITPSPEKLLPTIRSRC-QVLPFPPLSEEALLQWLIRQG-I 169 (188)
T ss_pred cCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCe--EEEEEECChHhChHHHHhhc-EEeeCCCCCHHHHHHHHHHcC-C
Confidence 46788999998644 3344555677776643333 33333332 22223344333 35555 45677899998886 8
Q ss_pred CHHHHHHHHHHH
Q psy1963 212 KVDTVEDVKKYL 223 (250)
Q Consensus 212 ~~~~~~~v~~~l 223 (250)
+++..+.+..+-
T Consensus 170 ~~~~~~~i~~~~ 181 (188)
T TIGR00678 170 SEEAAELLLALA 181 (188)
T ss_pred CHHHHHHHHHHc
Confidence 876666665543
No 89
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=73.20 E-value=44 Score=31.60 Aligned_cols=83 Identities=7% Similarity=0.003 Sum_probs=51.3
Q ss_pred EEEecCCCCHHHHHHHHHHcCCCEEEEeeccCCcCccccccceeecCCcccccccccccceEeccccCCCEEEEEecccc
Q psy1963 70 TVCGVPYTALPIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVT 149 (250)
Q Consensus 70 ~Ivgv~~~Gi~~a~~lA~~l~ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvit 149 (250)
.++-.-.+.-++|..+|..||+++......+=..|+. + -.+... ..|+.|+||-....
T Consensus 120 m~I~sgs~~~~LA~~IA~~Lg~~l~~~~~~rFpDGE~------~---------------Vri~e~-VrG~dV~IVqS~~~ 177 (439)
T PTZ00145 120 AILFSGSSNPLLSKNIADHLGTILGRVHLKRFADGEV------S---------------MQFLES-IRGKDVYIIQPTCP 177 (439)
T ss_pred eEEEECCCCHHHHHHHHHHhCCCceeeEEEECCCCCE------E---------------EEECCC-cCCCeEEEEecCCC
Confidence 3333345567899999999999976544321112322 0 122233 47899999988543
Q ss_pred c-cHHHHH---HHHHHHhCCCeEEEEEEE
Q psy1963 150 S-GSSILE---TINDLKSVGIVVTDVLTI 174 (250)
Q Consensus 150 T-G~Tl~~---a~~~L~~~Ga~vv~~~vl 174 (250)
. -..+.+ ++.+++.+||+.+.+++.
T Consensus 178 pvNd~LmELLllidAlr~agAkrItlViP 206 (439)
T PTZ00145 178 PVNENLIELLLMISTCRRASAKKITAVIP 206 (439)
T ss_pred CCcHHHHHHHHHHHHHHHhccCeEEEEee
Confidence 3 233333 578889999987666654
No 90
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=68.91 E-value=45 Score=29.81 Aligned_cols=73 Identities=7% Similarity=0.109 Sum_probs=45.0
Q ss_pred HHHHHHHHHcCCCEEEEeeccCCcCccccccceeecCCcccccccccccceEeccccCCCEEEEEeccccc-cHHH---H
Q psy1963 80 PIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTS-GSSI---L 155 (250)
Q Consensus 80 ~~a~~lA~~l~ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvitT-G~Tl---~ 155 (250)
.+|..+|..+|+|+.......=..|+. + -.+... ..|+.|+||-..... -..+ .
T Consensus 2 ~lA~~ia~~lg~~l~~~~~~~FpdGE~------~---------------v~i~~~-v~g~~V~iv~s~~~p~nd~l~eLl 59 (302)
T PLN02369 2 ALSQEIACYLGLELGKITIKRFADGEI------Y---------------VQLQES-VRGCDVFLVQPTCPPANENLMELL 59 (302)
T ss_pred hHHHHHHHHhCCceeeeEEEECCCCCE------E---------------EEECCC-CCCCeEEEEecCCCCcchHHHHHH
Confidence 478999999999986544321112322 0 122223 478999999886522 2223 3
Q ss_pred HHHHHHHhCCCeEEEEEEE
Q psy1963 156 ETINDLKSVGIVVTDVLTI 174 (250)
Q Consensus 156 ~a~~~L~~~Ga~vv~~~vl 174 (250)
-.+.+++++|++.+.++..
T Consensus 60 ~~~~a~r~~~a~~i~~ViP 78 (302)
T PLN02369 60 IMIDACRRASAKRITAVIP 78 (302)
T ss_pred HHHHHHHHcCCCeEEEEee
Confidence 4678899999987655543
No 91
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=67.74 E-value=81 Score=28.63 Aligned_cols=77 Identities=13% Similarity=0.110 Sum_probs=48.0
Q ss_pred CCCHHHHHHHHHHcCCCEEEEeeccCCcCccccccceeecCCcccccccccccceEeccccCCCEEEEEeccccc-cHHH
Q psy1963 76 YTALPIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTS-GSSI 154 (250)
Q Consensus 76 ~~Gi~~a~~lA~~l~ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvitT-G~Tl 154 (250)
.+.-.+|..+|..+|+|+......+=..|+. + -.+... ..|+.|+||-+.... -..+
T Consensus 16 ~~~~~La~~ia~~lg~~l~~~~~~~FpdGE~------~---------------v~i~~~-vrg~dV~ivqs~~~p~nd~l 73 (332)
T PRK00553 16 SKAKKLVDSICRKLSMKPGEIVIQKFADGET------Y---------------IRFDES-VRNKDVVIFQSTCSPVNDSL 73 (332)
T ss_pred CCCHHHHHHHHHHhCCceeeeEEEECCCCCE------E---------------EEECCC-CCCCEEEEEcCCCCCCchHH
Confidence 4456799999999999986544321112321 0 122233 479999999886432 2233
Q ss_pred H---HHHHHHHhCCCeEEEEEEE
Q psy1963 155 L---ETINDLKSVGIVVTDVLTI 174 (250)
Q Consensus 155 ~---~a~~~L~~~Ga~vv~~~vl 174 (250)
. -.+.+++++||+.+.++..
T Consensus 74 ~eLll~~~alr~~~a~~i~~ViP 96 (332)
T PRK00553 74 MELLIAIDALKRGSAKSITAILP 96 (332)
T ss_pred HHHHHHHHHHHHcCCCeEEEEee
Confidence 3 4578889999987655553
No 92
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=67.61 E-value=54 Score=29.40 Aligned_cols=76 Identities=16% Similarity=0.149 Sum_probs=45.9
Q ss_pred CCCHHHHHHHHHHcCCCEEEEeeccCCcCccccccceeecCCcccccccccccceEeccccCCCEEEEEeccccc-cHHH
Q psy1963 76 YTALPIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTS-GSSI 154 (250)
Q Consensus 76 ~~Gi~~a~~lA~~l~ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvitT-G~Tl 154 (250)
.+.-.+|..+|..+|+|+.......=..|+. + -.+... ..|++|+||-+.-.. -..+
T Consensus 7 ~~~~~la~~ia~~lg~~~~~~~~~~FpdGE~------~---------------vri~~~-v~g~~V~ii~s~~~~~nd~l 64 (309)
T PRK01259 7 NANPELAEKIAKYLGIPLGKASVGRFSDGEI------S---------------VEINEN-VRGKDVFIIQSTCAPTNDNL 64 (309)
T ss_pred CCCHHHHHHHHHHhCCceeeeEEEECCCCCE------E---------------EEeCCC-CCCCEEEEECCCCCCCcHHH
Confidence 3456899999999999986543321111221 0 122223 478999999765322 2233
Q ss_pred ---HHHHHHHHhCCCeEEEEEE
Q psy1963 155 ---LETINDLKSVGIVVTDVLT 173 (250)
Q Consensus 155 ---~~a~~~L~~~Ga~vv~~~v 173 (250)
.-++.+++++|++.+.+++
T Consensus 65 ~eLll~~~alr~~ga~~i~lVi 86 (309)
T PRK01259 65 MELLIMIDALKRASAGRITAVI 86 (309)
T ss_pred HHHHHHHHHHHHcCCceEEEEe
Confidence 3467888999998655444
No 93
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=67.52 E-value=63 Score=28.52 Aligned_cols=75 Identities=19% Similarity=0.242 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHcCCCEEEEeeccCCcCccccccceeecCCcccccccccccceEeccccCCCEEEEEeccccccHHHH-
Q psy1963 77 TALPIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSIL- 155 (250)
Q Consensus 77 ~Gi~~a~~lA~~l~ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~- 155 (250)
+.-.+|..+|..+|+|+.......=..|+. + -.+... ..|++|+|+-..-.-...+.
T Consensus 7 ~~~~la~~ia~~l~~~~~~~~~~~FpdGE~------~---------------v~i~~~-v~g~~v~i~~~~~~~~d~l~e 64 (285)
T PRK00934 7 ASQLLASEVARLLNTELALVETKRFPDGEL------Y---------------VRILGE-IDGEDVVIISTTYPQDENLVE 64 (285)
T ss_pred CCHHHHHHHHHHHCCceEeeEEEECCCCCE------E---------------EEECCC-cCCCEEEEEeCCCCCcHHHHH
Confidence 446899999999999987655431112321 0 222233 47899999886443233233
Q ss_pred --HHHHHHHhCCCeEEEEEE
Q psy1963 156 --ETINDLKSVGIVVTDVLT 173 (250)
Q Consensus 156 --~a~~~L~~~Ga~vv~~~v 173 (250)
-++.+++++|++.+..+.
T Consensus 65 ll~~~~alr~~ga~~i~~v~ 84 (285)
T PRK00934 65 LLLLIDALRDEGAKSITLVI 84 (285)
T ss_pred HHHHHHHHHHcCCCeEEEEe
Confidence 357889999998665544
No 94
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=66.96 E-value=81 Score=28.43 Aligned_cols=77 Identities=17% Similarity=0.162 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHHcCCCEEEEeeccCCcCccccccceeecCCcccccccccccceEeccccCCCEEEEEeccccc-cHH-
Q psy1963 76 YTALPIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTS-GSS- 153 (250)
Q Consensus 76 ~~Gi~~a~~lA~~l~ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvitT-G~T- 153 (250)
.+.-.+|..+|..+|+++.......=..|+. + -.+... ..|+.|+||-..... -..
T Consensus 12 ~~~~~la~~ia~~lg~~l~~~~~~~FpdGE~------~---------------v~i~~~-vrg~dV~iv~s~~~~~nd~l 69 (320)
T PRK02269 12 SSNKELAEKVAQEIGIELGKSSVRQFSDGEI------Q---------------VNIEES-IRGHHVFILQSTSSPVNDNL 69 (320)
T ss_pred CCCHHHHHHHHHHhCCceeeeEEEECCCCCE------E---------------EEECCC-CCCCEEEEEecCCCCccchH
Confidence 3446899999999999986544321112321 0 122233 478999999875421 122
Q ss_pred --HHHHHHHHHhCCCeEEEEEEE
Q psy1963 154 --ILETINDLKSVGIVVTDVLTI 174 (250)
Q Consensus 154 --l~~a~~~L~~~Ga~vv~~~vl 174 (250)
+.-++.+|+++|++.+.++..
T Consensus 70 melll~~~alr~~~a~~i~~V~P 92 (320)
T PRK02269 70 MEILIMVDALKRASAESINVVMP 92 (320)
T ss_pred HHHHHHHHHHHHhCCCeEEEEEe
Confidence 445688899999987655543
No 95
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=66.43 E-value=41 Score=30.09 Aligned_cols=76 Identities=17% Similarity=0.205 Sum_probs=45.4
Q ss_pred CCCHHHHHHHHHHcCCCEEEEeeccCCcCccccccceeecCCcccccccccccceEeccccCCCEEEEE-eccccc-cHH
Q psy1963 76 YTALPIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVII-EDVVTS-GSS 153 (250)
Q Consensus 76 ~~Gi~~a~~lA~~l~ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIV-DDvitT-G~T 153 (250)
.+.-.+|..+|..+|+|+.......=..|+. + -.+... ..|+.|+|| ...... -..
T Consensus 7 ~~~~~la~~ia~~lg~~~~~~~~~~FpdGE~------~---------------v~i~~~-v~g~~v~iv~~s~~~~~~~~ 64 (308)
T TIGR01251 7 SSNQELAQKVAKNLGLPLGDVEVKRFPDGEL------Y---------------VRINES-VRGKDVFIIQQSTSAPVNDN 64 (308)
T ss_pred CCCHHHHHHHHHHhCCeeeeeEEEECCCCCE------E---------------EEECCC-CCCCeEEEEeCCCCCCccHH
Confidence 3446799999999999987654321111221 1 122223 478899998 543311 222
Q ss_pred ---HHHHHHHHHhCCCeEEEEEE
Q psy1963 154 ---ILETINDLKSVGIVVTDVLT 173 (250)
Q Consensus 154 ---l~~a~~~L~~~Ga~vv~~~v 173 (250)
+.-++.+++++|++.+.++.
T Consensus 65 l~el~~~~~a~r~~ga~~i~~v~ 87 (308)
T TIGR01251 65 LMELLIMIDALKRASAKSITAVI 87 (308)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEE
Confidence 34467889999998665544
No 96
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=66.25 E-value=57 Score=29.45 Aligned_cols=80 Identities=15% Similarity=0.152 Sum_probs=47.3
Q ss_pred EEecCCCCHHHHHHHHHHcCCCEEEEeeccCCcCccccccceeecCCcccccccccccceEeccccCCCEEEEEeccccc
Q psy1963 71 VCGVPYTALPIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTS 150 (250)
Q Consensus 71 Ivgv~~~Gi~~a~~lA~~l~ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvitT 150 (250)
|++. .+.-.+|..+|..+|+|+.......=.-|+. + -.+... ..|++|+||-+.-..
T Consensus 9 i~~g-~~~~~La~~ia~~lg~~l~~~~~~~FpdGE~------~---------------v~i~~~-v~g~~V~iiqs~~~p 65 (319)
T PRK04923 9 VFSG-NANKPLAQSICKELGVRMGKALVTRFSDGEV------Q---------------VEIEES-VRRQEVFVIQPTCAP 65 (319)
T ss_pred EEEC-CCCHHHHHHHHHHhCCceeeeEEEECCCCCE------E---------------EEECCC-cCCCeEEEEecCCCC
Confidence 4443 4456899999999999986543321112321 0 122233 478999999664322
Q ss_pred -cHH---HHHHHHHHHhCCCeEEEEEE
Q psy1963 151 -GSS---ILETINDLKSVGIVVTDVLT 173 (250)
Q Consensus 151 -G~T---l~~a~~~L~~~Ga~vv~~~v 173 (250)
-.. +.-++.+++++|++.+.++.
T Consensus 66 ~nd~lmeLl~~~~alr~~~a~~i~~Vi 92 (319)
T PRK04923 66 SAENLMELLVLIDALKRASAASVTAVI 92 (319)
T ss_pred CchHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 122 33357888899998666554
No 97
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=65.59 E-value=99 Score=27.92 Aligned_cols=77 Identities=19% Similarity=0.196 Sum_probs=47.0
Q ss_pred CCCHHHHHHHHHHcCCCEEEEeeccCCcCccccccceeecCCcccccccccccceEeccccCCCEEEEEeccccc-cHHH
Q psy1963 76 YTALPIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTS-GSSI 154 (250)
Q Consensus 76 ~~Gi~~a~~lA~~l~ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvitT-G~Tl 154 (250)
.+.-.+|..+|..+|+++.......=..|+. + -.+... ..|+.|+||-..-.. -..+
T Consensus 16 ~~~~~la~~ia~~lg~~l~~~~~~~FpdGE~------~---------------v~i~~~-v~g~dV~ii~s~~~~~nd~l 73 (323)
T PRK02458 16 NSNLEIAEKIAQAAGVPLGKLSSRQFSDGEI------M---------------INIEES-VRGDDIYIIQSTSFPVNDHL 73 (323)
T ss_pred CCCHHHHHHHHHHhCCceeeeEEEECCCCCE------E---------------EEecCC-cCCCeEEEEecCCCCCchHH
Confidence 4557899999999999986543321112321 1 122233 478999999765322 2233
Q ss_pred HH---HHHHHHhCCCeEEEEEEE
Q psy1963 155 LE---TINDLKSVGIVVTDVLTI 174 (250)
Q Consensus 155 ~~---a~~~L~~~Ga~vv~~~vl 174 (250)
.+ .+.+++++|++.+.++..
T Consensus 74 ~eLll~~~alr~~~a~~i~lViP 96 (323)
T PRK02458 74 WELLIMIDACKRASANTVNVVLP 96 (323)
T ss_pred HHHHHHHHHHHHcCCceEEEEEe
Confidence 33 577888999976655553
No 98
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=61.78 E-value=50 Score=27.85 Aligned_cols=49 Identities=12% Similarity=0.128 Sum_probs=36.6
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEEEEEeCCc-cHHHHHHhcCCcEEEeec
Q psy1963 149 TSGSSILETINDLKSVGIVVTDVLTIVDREQ-GGRANLKQLGYTLHSLFT 197 (250)
Q Consensus 149 tTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~~-~~~~~l~~~g~~v~sl~~ 197 (250)
.+|+.+.+.++.+++.+.+..-++|+.++.. .+.+..++.|+|++.+-.
T Consensus 8 g~Gsn~~al~~~~~~~~l~~~i~~visn~~~~~~~~~A~~~gIp~~~~~~ 57 (207)
T PLN02331 8 GGGSNFRAIHDACLDGRVNGDVVVVVTNKPGCGGAEYARENGIPVLVYPK 57 (207)
T ss_pred CCChhHHHHHHHHHcCCCCeEEEEEEEeCCCChHHHHHHHhCCCEEEecc
Confidence 4688888889998888766666777888764 456666788999987543
No 99
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=60.25 E-value=68 Score=28.70 Aligned_cols=72 Identities=15% Similarity=0.155 Sum_probs=43.6
Q ss_pred HHHHHHHHcCCCEEEEeeccCCcCccccccceeecCCcccccccccccceEeccccCCCEEEEEeccccc-cHHH---HH
Q psy1963 81 IATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTS-GSSI---LE 156 (250)
Q Consensus 81 ~a~~lA~~l~ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvitT-G~Tl---~~ 156 (250)
+|..+|..+|+++.......=..|+. + -.+... .+|+.|+||--.... ...+ .-
T Consensus 1 la~~ia~~l~~~l~~~~~~~F~DGE~------~---------------vri~~~-v~g~~v~ii~s~~~p~nd~l~ell~ 58 (304)
T PRK03092 1 LAEEVAKELGVEVTPTTAYDFANGEI------Y---------------VRFEES-VRGCDAFVLQSHTAPINKWLMEQLI 58 (304)
T ss_pred CHHHHHHHhCCceeeeEEEECCCCCE------E---------------EEECCC-CCCCEEEEEeCCCCCCcHHHHHHHH
Confidence 47789999999986544321112221 1 122223 479999998875442 2333 44
Q ss_pred HHHHHHhCCCeEEEEEEE
Q psy1963 157 TINDLKSVGIVVTDVLTI 174 (250)
Q Consensus 157 a~~~L~~~Ga~vv~~~vl 174 (250)
.+.+++++|++.+.++..
T Consensus 59 ~~~a~r~~~a~~i~~ViP 76 (304)
T PRK03092 59 MIDALKRASAKRITVVLP 76 (304)
T ss_pred HHHHHHHcCCCeEEEEEe
Confidence 678899999987665553
No 100
>PRK11778 putative inner membrane peptidase; Provisional
Probab=58.71 E-value=12 Score=34.07 Aligned_cols=86 Identities=10% Similarity=0.099 Sum_probs=51.7
Q ss_pred CCCEEEE-EeccccccHHHHHHH-HHHHhCCCeEEEE-EEEEeCCccHHHHHHhcCCcEEEeecHHHHHHHHHHcCCCCH
Q psy1963 137 KGDKCVI-IEDVVTSGSSILETI-NDLKSVGIVVTDV-LTIVDREQGGRANLKQLGYTLHSLFTLSSVMDILYKANKIKV 213 (250)
Q Consensus 137 ~Gk~VlI-VDDvitTG~Tl~~a~-~~L~~~Ga~vv~~-~vlvd~~~~~~~~l~~~g~~v~sl~~~~~l~~~~~~~~~i~~ 213 (250)
.|+.|+. +|++.+||+=+.++. ..+-..-...++. .|+.... ...+.|++.|+.+..+-. .+....+.-++..|+
T Consensus 153 ~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~~~-~~~~lLeKlGI~~evi~a-G~yK~a~~pf~~~se 230 (330)
T PRK11778 153 AGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQIP-NFHRLLKKHDIDVELHTA-GEYKRTLTLFGENTE 230 (330)
T ss_pred cCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeeecc-CHHHHHHHCCCceEEEEe-cCccCCCCCCCCCCH
Confidence 4666666 999999999998874 3333333334444 3444443 556677889998877653 222222333345677
Q ss_pred HHHHHHHHHHH
Q psy1963 214 DTVEDVKKYLC 224 (250)
Q Consensus 214 ~~~~~v~~~l~ 224 (250)
+..+.+.+++.
T Consensus 231 e~Re~~q~~Ld 241 (330)
T PRK11778 231 EGREKFREELE 241 (330)
T ss_pred HHHHHHHHHHH
Confidence 77666666665
No 101
>PF11202 PRTase_1: Phosphoribosyl transferase (PRTase); InterPro: IPR011215 This is a family of uncharacterised bacterial proteins.
Probab=55.33 E-value=23 Score=30.84 Aligned_cols=146 Identities=12% Similarity=0.164 Sum_probs=83.0
Q ss_pred HHHHHHHCCceeeCCccccCccccCeEeeccc--ccCCHHHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHHHHHH
Q psy1963 11 LCLQLFDIDALKFGDFVTKVGIKTPVYLDLRG--IISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSVK 88 (250)
Q Consensus 11 ~~~~l~~~~~~~~g~f~l~sG~~s~~y~d~~~--~~~~p~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~lA~~ 88 (250)
--+.+++.|.--+.+..--.-.+++-|.++-. +-.+...+......+++.+.+.....-+++...+.|-|++..+-+.
T Consensus 28 erE~lIQsG~~HYSEmL~~E~~Ps~~y~~lf~~aL~~~~~rlA~~v~~la~~i~~~~g~~~vLVSLaRAGtPiGVLlkR~ 107 (257)
T PF11202_consen 28 ERERLIQSGRRHYSEMLPIEYQPSAEYMDLFHQALAQNAQRLARAVGVLAELIIARRGQPIVLVSLARAGTPIGVLLKRY 107 (257)
T ss_pred HHHHHHHcCCccccccCCCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccCCcHHHHHHHH
Confidence 34567888886677654344456666766321 1111122222233456666555435568999999999998877665
Q ss_pred c-----CCC---E--EEEeeccCCcCccccccceeecCCcccccccccccceEeccccCCCEEEEEeccccccHHHHHHH
Q psy1963 89 Y-----NIP---M--LIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETI 158 (250)
Q Consensus 89 l-----~ip---~--~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~ 158 (250)
+ |+. + -++|-+ |... ... ..+.. --+...|+.||=+.--|.-..+..
T Consensus 108 l~~~~~g~~~~HYsISIIRdR----GID~-------------~AL-----~~I~~-~H~~~~ivFVDGWTGKGaI~~eL~ 164 (257)
T PF11202_consen 108 LRRMKYGLDLPHYSISIIRDR----GIDE-------------NAL-----RYILA-RHPPESIVFVDGWTGKGAITRELK 164 (257)
T ss_pred HHHhhcCCCCCceeEEEecCC----CCCH-------------HHH-----HHHHH-hCCCcceEEEecCccccHHHHHHH
Confidence 4 222 1 122221 2110 000 11111 135678999999999999999988
Q ss_pred HHHHhC----CCe-EEEEEEEEeCCc
Q psy1963 159 NDLKSV----GIV-VTDVLTIVDREQ 179 (250)
Q Consensus 159 ~~L~~~----Ga~-vv~~~vlvd~~~ 179 (250)
+.|++. |.. .-..+|+.|...
T Consensus 165 ~al~~~~~~~~~~~~~~LaVLaDp~g 190 (257)
T PF11202_consen 165 KALAAFNARYGTRLSPDLAVLADPAG 190 (257)
T ss_pred HHHHHHHhhcCCCCCCCeEEEecCcc
Confidence 888665 322 334667777753
No 102
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=54.24 E-value=14 Score=31.71 Aligned_cols=88 Identities=14% Similarity=0.105 Sum_probs=50.4
Q ss_pred cccccHHHHHHHHHHHhCCCeEEEEEEEEeCCccHHHHHHhcCCcEEEeecHHHHHHHHHHc-CCCC-----------HH
Q psy1963 147 VVTSGSSILETINDLKSVGIVVTDVLTIVDREQGGRANLKQLGYTLHSLFTLSSVMDILYKA-NKIK-----------VD 214 (250)
Q Consensus 147 vitTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~~~~~~~l~~~g~~v~sl~~~~~l~~~~~~~-~~i~-----------~~ 214 (250)
-+-||+|+...++.|-+. .+--.-...+..+......+++.|+++.++-.++. ++.+.+. ..++ +-
T Consensus 25 GlGTGST~~~fI~~Lg~~-~~~e~~i~~V~TS~~t~~l~~~~GI~v~~l~~~~~-lDl~iDGADEvd~~~~lIKGGGgAl 102 (227)
T COG0120 25 GLGTGSTAAYFIEALGRR-VKGELDIGGVPTSFQTEELARELGIPVSSLNEVDS-LDLAIDGADEVDPNLNLIKGGGGAL 102 (227)
T ss_pred EEcCcHHHHHHHHHHHHh-hccCccEEEEeCCHHHHHHHHHcCCeecCccccCc-cceEeecccccCCCCCEEccChHHH
Confidence 468999999999999641 11002233344554556667789999999887754 2333221 0111 11
Q ss_pred HHHHHHHHHHhcCCCCCCCCCC
Q psy1963 215 TVEDVKKYLCNNQVLPKCDNDV 236 (250)
Q Consensus 215 ~~~~v~~~l~~~~~~~~~~~~~ 236 (250)
..|.|.+|..+...|-.|-|+.
T Consensus 103 ~rEKIva~~ak~~IvIvDesKl 124 (227)
T COG0120 103 LREKIVASAAKRFIVIVDESKL 124 (227)
T ss_pred HHHHHHHHhcCeEEEEEeCccc
Confidence 2677777776554444444433
No 103
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=53.95 E-value=83 Score=28.42 Aligned_cols=77 Identities=18% Similarity=0.220 Sum_probs=49.7
Q ss_pred CCCHHHHHHHHHHcCCCEEEEeeccCCcCccccccceeecCCcccccccccccceEeccccCCCEEEEEeccccccH-HH
Q psy1963 76 YTALPIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGS-SI 154 (250)
Q Consensus 76 ~~Gi~~a~~lA~~l~ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~Gk~VlIVDDvitTG~-Tl 154 (250)
.+.-.+|..+|+.+|+|+..+.-.+=.-|+. + -.++.. ..|+.|.|+...-.... .+
T Consensus 11 ~s~~~La~~ia~~l~~~l~~~~~~rF~DGE~------~---------------V~i~Es-Vrg~dVfI~qs~~~pvnd~l 68 (314)
T COG0462 11 SSNPELAEKIAKRLGIPLGKVEVKRFPDGEI------Y---------------VRIEES-VRGKDVFIIQSTSPPVNDNL 68 (314)
T ss_pred CCCHHHHHHHHHHhCCCcccceeEEcCCCcE------E---------------EEeccc-ccCCeEEEEeCCCCCcCHHH
Confidence 3445789999999999987654431112322 0 223333 47999998877666333 34
Q ss_pred HH---HHHHHHhCCCeEEEEEEE
Q psy1963 155 LE---TINDLKSVGIVVTDVLTI 174 (250)
Q Consensus 155 ~~---a~~~L~~~Ga~vv~~~vl 174 (250)
.+ .+.+++.+||+.+.++..
T Consensus 69 mELLi~idA~k~asA~~It~ViP 91 (314)
T COG0462 69 MELLIMIDALKRASAKRITAVIP 91 (314)
T ss_pred HHHHHHHHHHHhcCCceEEEEee
Confidence 44 578889999988777664
No 104
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=52.31 E-value=38 Score=30.37 Aligned_cols=97 Identities=16% Similarity=0.148 Sum_probs=61.8
Q ss_pred eEeccccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEEEeCC--ccHHHHHH----h----cCCcEEE-----
Q psy1963 130 LIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDRE--QGGRANLK----Q----LGYTLHS----- 194 (250)
Q Consensus 130 ~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~--~~~~~~l~----~----~g~~v~s----- 194 (250)
++.|. +.|++|+||--=-+......+..+.|+.+|+.+.+...+-+.. ....+.++ . .|..+..
T Consensus 76 lv~g~-L~g~~V~vV~~p~a~~~~~~~v~~~L~~AGA~v~g~i~lt~~~~d~~~~~~l~~~~~~~~~p~g~~l~~~~~~~ 154 (308)
T PF11382_consen 76 LVAGR-LTGRSVAVVTLPGADDEDVDAVRELLEQAGATVTGRITLTDKFLDPEQADKLRSLAAQDTLPAGAQLSEDAADP 154 (308)
T ss_pred HhcCc-cCCCEEEEEEcCCCChHHHHHHHHHHHHCCCeEEEEEEEchhhcChhhHHHHHHHHhhcccCcccccccccccc
Confidence 34444 5899999999777788899999999999999999999998775 22222232 1 2222111
Q ss_pred eecHHHHH-HHHHHc-CCCCHHHHHHHHHHHHhcC
Q psy1963 195 LFTLSSVM-DILYKA-NKIKVDTVEDVKKYLCNNQ 227 (250)
Q Consensus 195 l~~~~~l~-~~~~~~-~~i~~~~~~~v~~~l~~~~ 227 (250)
-.+..+++ ..+... +..+.++...+.+.|.+..
T Consensus 155 ~~~~g~~Lg~aL~~~~~~~~~~~~~~vl~~L~~~g 189 (308)
T PF11382_consen 155 GSHAGELLGAALLLDDPSASDEDRAAVLAALREAG 189 (308)
T ss_pred chhHHHHHHHHHhccCCCCCchhHHHHHHHHhcCC
Confidence 11123332 333322 5666677788888877653
No 105
>KOG0741|consensus
Probab=51.10 E-value=2.4e+02 Score=27.77 Aligned_cols=161 Identities=16% Similarity=0.199 Sum_probs=89.3
Q ss_pred HHHHHHHHhhcCC--Ccc-EEEecCCCCH-HHHHHHHHHcCCCEEEEeeccCCcCccccccceeecCCcccccccccccc
Q psy1963 54 STIINDYLNINKI--SAR-TVCGVPYTAL-PIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKK 129 (250)
Q Consensus 54 ~~~la~~i~~~~~--~~d-~Ivgv~~~Gi-~~a~~lA~~l~ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (250)
|..+.+..+.... -.. ++-|+|-.|= .+|+.+|...+.||+-+-....-.|..+...-.+. .+
T Consensus 523 G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i-------------~k 589 (744)
T KOG0741|consen 523 GKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHI-------------KK 589 (744)
T ss_pred HHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHH-------------HH
Confidence 5566777765421 223 3457776664 68999999999999876654332332200000000 01
Q ss_pred eEeccccCCCEEEEEecccc-----------ccHHHHHHHHHHHhCCCeEEEEEEEEeCCccHHHHHHhcC--------C
Q psy1963 130 LIEGVYEKGDKCVIIEDVVT-----------SGSSILETINDLKSVGIVVTDVLTIVDREQGGRANLKQLG--------Y 190 (250)
Q Consensus 130 ~i~g~~~~Gk~VlIVDDvit-----------TG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~~~~~~~l~~~g--------~ 190 (250)
..+++...--.|+||||+=. |-..+.+..-+|++.-++--..+++...+ .++.|++.| +
T Consensus 590 ~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS--~~~vL~~m~i~~~F~~~i 667 (744)
T KOG0741|consen 590 IFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTS--RREVLQEMGILDCFSSTI 667 (744)
T ss_pred HHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEeccc--HHHHHHHcCHHHhhhhee
Confidence 22333444567999998732 23444455555666655533444544443 233333322 2
Q ss_pred cEEEeecHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC
Q psy1963 191 TLHSLFTLSSVMDILYKANKIKVDTVEDVKKYLCNNQVL 229 (250)
Q Consensus 191 ~v~sl~~~~~l~~~~~~~~~i~~~~~~~v~~~l~~~~~~ 229 (250)
.|--|.+.+++.+.+.+.+..++.+.+.+.+-+...+.|
T Consensus 668 ~Vpnl~~~~~~~~vl~~~n~fsd~~~~~~~~~~~~~~~~ 706 (744)
T KOG0741|consen 668 HVPNLTTGEQLLEVLEELNIFSDDEVRAIAEQLLSKKVN 706 (744)
T ss_pred ecCccCchHHHHHHHHHccCCCcchhHHHHHHHhccccc
Confidence 333556678899999998877767766666655554433
No 106
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=50.58 E-value=18 Score=32.59 Aligned_cols=80 Identities=15% Similarity=0.130 Sum_probs=45.1
Q ss_pred CEEEEEeccccccHHHHHHHH-HHHhCCCeEEEEE-EEEeCCccHHHHHHhcCCcEEEeecHHHHHHHHHHcCCCCHHHH
Q psy1963 139 DKCVIIEDVVTSGSSILETIN-DLKSVGIVVTDVL-TIVDREQGGRANLKQLGYTLHSLFTLSSVMDILYKANKIKVDTV 216 (250)
Q Consensus 139 k~VlIVDDvitTG~Tl~~a~~-~L~~~Ga~vv~~~-vlvd~~~~~~~~l~~~g~~v~sl~~~~~l~~~~~~~~~i~~~~~ 216 (250)
.-++.|+|++.||+++.++.. .+-..-..++|-. |+.... +-.+.++..|+....+.+ ......+..+...++++.
T Consensus 130 PV~v~v~~~AASGGY~IA~aAd~I~a~p~si~GSIGVi~~~~-~~~~l~~k~Gv~~~~~~a-g~~k~~~~~~~~~t~e~~ 207 (317)
T COG0616 130 PVVVSVGGYAASGGYYIALAADKIVADPSSITGSIGVISGAP-NFEELLEKLGVEKEVITA-GEYKDILSPFRPLTEEER 207 (317)
T ss_pred CEEEEECCeecchhhhhhccCCEEEecCCceeeeceeEEecC-CHHHHHHhcCCceeeeec-cccccccCcccCCCHHHH
Confidence 579999999999999999743 3333333344443 444433 455666778877554443 222222223344555554
Q ss_pred HHHH
Q psy1963 217 EDVK 220 (250)
Q Consensus 217 ~~v~ 220 (250)
+.+.
T Consensus 208 ~~~q 211 (317)
T COG0616 208 EILQ 211 (317)
T ss_pred HHHH
Confidence 4444
No 107
>PHA02588 cd deoxycytidylate deaminase; Provisional
Probab=48.92 E-value=46 Score=27.07 Aligned_cols=55 Identities=15% Similarity=0.148 Sum_probs=39.9
Q ss_pred cccccHHHHHHHHHHHhCCCeEEEEEEEEeCC-ccHHHHHHhcCCcEEEeecHHHHH
Q psy1963 147 VVTSGSSILETINDLKSVGIVVTDVLTIVDRE-QGGRANLKQLGYTLHSLFTLSSVM 202 (250)
Q Consensus 147 vitTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~-~~~~~~l~~~g~~v~sl~~~~~l~ 202 (250)
+++|..--..|+.+|..+|.+.|.+..-.++. .++.+.|++.|++|..+ ....+.
T Consensus 104 LYvTlePC~~Ca~aI~~~gI~rVvy~~~~~~~~~~~~~~L~~~Gi~v~~~-~~~~~~ 159 (168)
T PHA02588 104 MYVTASPCPDCAKAIAQSGIKKLVYCEKYDRNGPGWDDILRKSGIEVIQI-PKEELN 159 (168)
T ss_pred EEEeCCCcHHHHHHHHHhCCCEEEEeeccCCCcHHHHHHHHHCCCEEEEe-CHHHHH
Confidence 45677777899999999998877665544444 35678999999999875 334443
No 108
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=48.68 E-value=84 Score=26.22 Aligned_cols=45 Identities=22% Similarity=0.217 Sum_probs=30.5
Q ss_pred cHHHHHHHHHHHhCCCeEEEEEEEEeCC-ccHHHHHHhcCCcEEEe
Q psy1963 151 GSSILETINDLKSVGIVVTDVLTIVDRE-QGGRANLKQLGYTLHSL 195 (250)
Q Consensus 151 G~Tl~~a~~~L~~~Ga~vv~~~vlvd~~-~~~~~~l~~~g~~v~sl 195 (250)
|+.+.++.+.+.+.+....-++++.++. ..+.+..++.|+|++.+
T Consensus 12 gs~~~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~~gIp~~~~ 57 (200)
T PRK05647 12 GSNLQAIIDACAAGQLPAEIVAVISDRPDAYGLERAEAAGIPTFVL 57 (200)
T ss_pred ChhHHHHHHHHHcCCCCcEEEEEEecCccchHHHHHHHcCCCEEEE
Confidence 8888888999888764333344556654 34555667899998764
No 109
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=48.28 E-value=77 Score=20.84 Aligned_cols=28 Identities=11% Similarity=0.132 Sum_probs=22.2
Q ss_pred cccccHHHHHHHHHHHhCCCeEEEEEEE
Q psy1963 147 VVTSGSSILETINDLKSVGIVVTDVLTI 174 (250)
Q Consensus 147 vitTG~Tl~~a~~~L~~~Ga~vv~~~vl 174 (250)
+=..-+.+..+.+.+.++|.++..+.+.
T Consensus 8 v~d~pG~La~v~~~l~~~~inI~~i~~~ 35 (66)
T cd04908 8 LENKPGRLAAVTEILSEAGINIRALSIA 35 (66)
T ss_pred EcCCCChHHHHHHHHHHCCCCEEEEEEE
Confidence 3345567999999999999999887764
No 110
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=47.91 E-value=59 Score=31.83 Aligned_cols=67 Identities=10% Similarity=0.039 Sum_probs=39.8
Q ss_pred CEEEEEecccccc-HHHHHHHHHHHhCCCeEEEEEEEEeCCccHHHHHH-----hcCCcEEEeecHHHHHHHH
Q psy1963 139 DKCVIIEDVVTSG-SSILETINDLKSVGIVVTDVLTIVDREQGGRANLK-----QLGYTLHSLFTLSSVMDIL 205 (250)
Q Consensus 139 k~VlIVDDvitTG-~Tl~~a~~~L~~~Ga~vv~~~vlvd~~~~~~~~l~-----~~g~~v~sl~~~~~l~~~~ 205 (250)
+-|||+-|...+. .....+++.|++.|..+..+.|=-.....-.+.+. ..+.+++...++.++....
T Consensus 151 KVVILLTDG~sns~~dvleaAq~LR~~GVeI~vIGVG~g~n~e~LrlIAgC~p~~g~c~~Y~vadf~eL~~iv 223 (576)
T PTZ00441 151 QLVILMTDGIPNSKYRALEESRKLKDRNVKLAVIGIGQGINHQFNRLLAGCRPREGKCKFYSDADWEEAKNLI 223 (576)
T ss_pred eEEEEEecCCCCCcccHHHHHHHHHHCCCEEEEEEeCCCcCHHHHHHHhccCCCCCCCceEEeCCHHHHHHHH
Confidence 5799999999865 34556678899999876555542111111112222 1235778877777665554
No 111
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=47.05 E-value=2.1e+02 Score=25.44 Aligned_cols=152 Identities=11% Similarity=0.084 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHhhcCCCccEEEecC----CCCH-HHHHHHHHHcCCCEEEEeeccCCcCccccccceeecCCccccccc
Q psy1963 50 MDYLSTIINDYLNINKISARTVCGVP----YTAL-PIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKT 124 (250)
Q Consensus 50 ~~~l~~~la~~i~~~~~~~d~Ivgv~----~~Gi-~~a~~lA~~l~ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~ 124 (250)
--..|..++.+....+ .-+|+..- .-|. .=+.-+|...++|++++-..+ .++..+-........
T Consensus 108 p~a~G~A~a~k~~~~~--~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveNN-~~aist~~~~~~~~~-------- 176 (300)
T PF00676_consen 108 PIAAGVALAIKYRGKD--GVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVENN-QYAISTPTEEQTASP-------- 176 (300)
T ss_dssp HHHHHHHHHHHHTTSS--EEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEEE-SEETTEEHHHHCSSS--------
T ss_pred ccccchhHhhhhcCCc--eeEEEEecCcccccCccHHHHHHHhhccCCeEEEEecC-CcccccCcccccccc--------
Confidence 3345777777765542 11222111 1233 346677888899998776643 344331111111000
Q ss_pred ccccceEeccccCCCEEEEEe--ccccccHHHHHHHHHHHhC-CCeEEEEEEEE-------eCCccHH--HHHH---hcC
Q psy1963 125 YGTKKLIEGVYEKGDKCVIIE--DVVTSGSSILETINDLKSV-GIVVTDVLTIV-------DREQGGR--ANLK---QLG 189 (250)
Q Consensus 125 ~~~~~~i~g~~~~Gk~VlIVD--DvitTG~Tl~~a~~~L~~~-Ga~vv~~~vlv-------d~~~~~~--~~l~---~~g 189 (250)
...+-..--|-..+.|| |+...=.++..|++..++. |+.++.+.+.= |.....+ +.++ ...
T Consensus 177 ----~~~~~a~~~gip~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~Dd~~~yr~~~e~~~~~~~~ 252 (300)
T PF00676_consen 177 ----DIADRAKGYGIPGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVTYRLRGHSESDDPTFYRSPEEYEEWWKKR 252 (300)
T ss_dssp ----TSGGGGGGTTSEEEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSCGGGTSHHHHHHHHHHCT
T ss_pred ----chhhhhhccCCcEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEeeccCCCCCCCCCccccCCHHHHHHHHhcC
Confidence 01110111355667776 7888888888899988885 66776666541 1110011 2222 232
Q ss_pred CcEEEeecHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy1963 190 YTLHSLFTLSSVMDILYKANKIKVDTVEDVKKY 222 (250)
Q Consensus 190 ~~v~sl~~~~~l~~~~~~~~~i~~~~~~~v~~~ 222 (250)
.| +.-+.++|.+.|.+++++.+.+.+-
T Consensus 253 DP------i~~~~~~L~~~g~~t~~~~~~i~~e 279 (300)
T PF00676_consen 253 DP------IKRFRRYLIEEGVLTEEELDAIEAE 279 (300)
T ss_dssp -H------HHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred cH------HHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 33 5567888999999998887666653
No 112
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=46.56 E-value=21 Score=30.68 Aligned_cols=88 Identities=13% Similarity=0.097 Sum_probs=47.8
Q ss_pred cccccHHHHHHHHHHHhCCCe-EEEEEEEEeCCccHHHHHHhcCCcEEEeecHHHHHHHHHHcC-CCC-----------H
Q psy1963 147 VVTSGSSILETINDLKSVGIV-VTDVLTIVDREQGGRANLKQLGYTLHSLFTLSSVMDILYKAN-KIK-----------V 213 (250)
Q Consensus 147 vitTG~Tl~~a~~~L~~~Ga~-vv~~~vlvd~~~~~~~~l~~~g~~v~sl~~~~~l~~~~~~~~-~i~-----------~ 213 (250)
-+-||+|+..+++.|.+.... -.. ...+..+.......++.|+|+.++-+... ++.+.+.- .++ .
T Consensus 26 GLGTGSTv~~~i~~L~~~~~~~~l~-i~~VptS~~t~~~a~~~Gipl~~l~~~~~-iDiaiDGADevd~~lnlIKGgGga 103 (228)
T PRK13978 26 GIGTGSTMELLLPQMAQLIKERGYN-ITGVCTSNKIAFLAKELGIKICEINDVDH-IDLAIDGADEVDPSLNIIKGGGGA 103 (228)
T ss_pred EeCchHHHHHHHHHHHHHhhccCcc-EEEEeCcHHHHHHHHHcCCcEechhhCCc-eeEEEecCceecCCccEEecCcHH
Confidence 467999999998888654221 011 22234454555556678999888765433 12222210 111 1
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCC
Q psy1963 214 DTVEDVKKYLCNNQVLPKCDNDV 236 (250)
Q Consensus 214 ~~~~~v~~~l~~~~~~~~~~~~~ 236 (250)
-..|.+.++..+...|-.|.+..
T Consensus 104 l~rEKiva~~A~~~iii~D~sK~ 126 (228)
T PRK13978 104 LFREKVIDEMASRFVVVVDETKI 126 (228)
T ss_pred HHHHHHHHHhcCcEEEEEeCcce
Confidence 12577777776554444444433
No 113
>PRK04195 replication factor C large subunit; Provisional
Probab=46.20 E-value=1.9e+02 Score=27.40 Aligned_cols=55 Identities=18% Similarity=0.228 Sum_probs=37.3
Q ss_pred cccCCHHHHHHHHHHHHHHHhhcCCCccEEEecCCCCHH-HHHHHHHHcCCCEEEE
Q psy1963 42 GIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALP-IATAVSVKYNIPMLIR 96 (250)
Q Consensus 42 ~~~~~p~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~-~a~~lA~~l~ip~~~~ 96 (250)
.+.+++.....+..++...........-++.|+|-.|=. +|.++|..++.+++..
T Consensus 15 dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~~iel 70 (482)
T PRK04195 15 DVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIEL 70 (482)
T ss_pred HhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 466778777777666654443222244567888887864 8889999999887654
No 114
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=45.78 E-value=55 Score=27.52 Aligned_cols=49 Identities=18% Similarity=0.151 Sum_probs=36.0
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEEEEEeCCc-cHHHHHHhcCCcEEEeec
Q psy1963 149 TSGSSILETINDLKSVGIVVTDVLTIVDREQ-GGRANLKQLGYTLHSLFT 197 (250)
Q Consensus 149 tTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~~-~~~~~l~~~g~~v~sl~~ 197 (250)
-+|+.+.+.+++++.......-.+|+.|+.+ .+.++-++.|+|.+.+-.
T Consensus 9 G~GSNlqaiida~~~~~~~a~i~~Visd~~~A~~lerA~~~gIpt~~~~~ 58 (200)
T COG0299 9 GNGSNLQAIIDAIKGGKLDAEIVAVISDKADAYALERAAKAGIPTVVLDR 58 (200)
T ss_pred CCcccHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHcCCCEEEecc
Confidence 4788999999999855444555677778853 567777789999876653
No 115
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=43.69 E-value=2.5e+02 Score=25.44 Aligned_cols=45 Identities=16% Similarity=0.142 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHHHHHH-cCCCEEEEee
Q psy1963 45 SYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSVK-YNIPMLIRRK 98 (250)
Q Consensus 45 ~~p~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~lA~~-l~ip~~~~rk 98 (250)
.++.... .+++.+... .+|+|+++.+ |.|..+..+ .++|.++.--
T Consensus 72 ~~~~~a~----~iarql~~~--~~dviv~i~t---p~Aq~~~s~~~~iPVV~aav 117 (322)
T COG2984 72 GDLGTAA----QIARQLVGD--KPDVIVAIAT---PAAQALVSATKTIPVVFAAV 117 (322)
T ss_pred CChHHHH----HHHHHhhcC--CCcEEEecCC---HHHHHHHHhcCCCCEEEEcc
Confidence 4555443 445555544 4789988876 666655554 5789887643
No 116
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=42.45 E-value=55 Score=21.55 Aligned_cols=40 Identities=13% Similarity=0.230 Sum_probs=30.6
Q ss_pred EEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEEEeCCccH
Q psy1963 140 KCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQGG 181 (250)
Q Consensus 140 ~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~~~~ 181 (250)
+++|+.++ ||.-+...+..+|+.|..+..-+++......|
T Consensus 2 ~~ll~~g~--~~~el~~~l~~~r~~~~~~~~kAvlT~tN~~W 41 (58)
T PF12646_consen 2 EFLLFSGF--SGEELDKFLDALRKAGIPIPLKAVLTPTNINW 41 (58)
T ss_pred CEEEECCC--CHHHHHHHHHHHHHcCCCcceEEEECCCcccC
Confidence 46777776 88899999999999999666666666655443
No 117
>PRK09019 translation initiation factor Sui1; Validated
Probab=41.03 E-value=1.1e+02 Score=23.21 Aligned_cols=58 Identities=17% Similarity=0.217 Sum_probs=41.4
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHhC---CCeEEEEEEEEeC--CccHHHHHHhcCCcEE
Q psy1963 136 EKGDKCVIIEDVVTSGSSILETINDLKSV---GIVVTDVLTIVDR--EQGGRANLKQLGYTLH 193 (250)
Q Consensus 136 ~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~---Ga~vv~~~vlvd~--~~~~~~~l~~~g~~v~ 193 (250)
..||.|-+|+-+-.....+...++.|++. |+.+..-.+.+.= .+...+.|.+.|+.+.
T Consensus 42 RkGK~VTiI~Gl~~~~~dlk~l~K~lKkk~gcGGtvk~~~IelQGD~r~~v~~~L~~~Gf~~k 104 (108)
T PRK09019 42 RKGKGVCLITGLDLDDAELKKLAAELKKKCGCGGAVKDGVIEIQGDKRDLLKSLLEAKGMKVK 104 (108)
T ss_pred CCCCeEEEEeCCcCCHHHHHHHHHHHHHHhcCCCeEEcCEEEEcCcHHHHHHHHHHHCCCeEE
Confidence 47899999999988888999999999985 6777654443322 2334556667777653
No 118
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=40.38 E-value=68 Score=21.66 Aligned_cols=31 Identities=16% Similarity=0.157 Sum_probs=25.1
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHhCCCeEE
Q psy1963 136 EKGDKCVIIEDVVTSGSSILETINDLKSVGIVVT 169 (250)
Q Consensus 136 ~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv 169 (250)
.+++.|+++++- |.....++..|++.|...+
T Consensus 48 ~~~~~vv~~c~~---~~~a~~~~~~l~~~G~~~v 78 (89)
T cd00158 48 DKDKPIVVYCRS---GNRSARAAKLLRKAGGTNV 78 (89)
T ss_pred CCCCeEEEEeCC---CchHHHHHHHHHHhCcccE
Confidence 467889999887 7788889999999986543
No 119
>PLN02384 ribose-5-phosphate isomerase
Probab=39.69 E-value=32 Score=30.25 Aligned_cols=54 Identities=11% Similarity=0.078 Sum_probs=34.1
Q ss_pred cccccHHHHHHHHHHHhCCCeE-EEEEEEEeCCccHHHHHHhcCCcEEEeecHHH
Q psy1963 147 VVTSGSSILETINDLKSVGIVV-TDVLTIVDREQGGRANLKQLGYTLHSLFTLSS 200 (250)
Q Consensus 147 vitTG~Tl~~a~~~L~~~Ga~v-v~~~vlvd~~~~~~~~l~~~g~~v~sl~~~~~ 200 (250)
-+-||+|+..+++.|.+....- ..-...+..+......+++.|+++.++-+...
T Consensus 54 GLGTGSTv~~~I~~La~r~~~~~l~~I~~VpTS~~T~~~a~~~GIpl~~l~~v~~ 108 (264)
T PLN02384 54 GLGTGSTAKHAVDRIGELLRQGKLKNIIGIPTSKKTHEQAVSLGIPLSDLDSHPV 108 (264)
T ss_pred EecchHHHHHHHHHHHHhhhhccccceEEEcCcHHHHHHHHHcCCcEeccccCCc
Confidence 4689999999988887654220 11022334444556666678999888776443
No 120
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=38.90 E-value=42 Score=27.46 Aligned_cols=39 Identities=26% Similarity=0.263 Sum_probs=22.0
Q ss_pred CCCEEEEEeccccccHHHHHHH-HHHHhCCCeEEEEEEEEeCC
Q psy1963 137 KGDKCVIIEDVVTSGSSILETI-NDLKSVGIVVTDVLTIVDRE 178 (250)
Q Consensus 137 ~Gk~VlIVDDvitTG~Tl~~a~-~~L~~~Ga~vv~~~vlvd~~ 178 (250)
.|. =|||||++..+.-+.... ++|. |..+..+.|..+..
T Consensus 82 aG~-~VIvD~v~~~~~~l~d~l~~~L~--~~~vl~VgV~Cple 121 (174)
T PF07931_consen 82 AGN-NVIVDDVFLGPRWLQDCLRRLLA--GLPVLFVGVRCPLE 121 (174)
T ss_dssp TT--EEEEEE--TTTHHHHHHHHHHHT--TS-EEEEEEE--HH
T ss_pred CCC-CEEEecCccCcHHHHHHHHHHhC--CCceEEEEEECCHH
Confidence 554 567899999998766666 6664 55565555555544
No 121
>PF02570 CbiC: Precorrin-8X methylmutase; InterPro: IPR003722 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiC and CobH precorrin-8X methylmutase (also known as precorrin isomerase, 5.4.1.2 from EC), both as stand-alone enzymes and when CobJ forms part of a bifunctional enzyme. CobH and CbiC from the aerobic and anaerobic pathways, respectively, catalyse a methyl rearrangement in precorrin-8 that moves the methyl group from C-11 to C-12 to produce hydrogenobyrinic acid []. Hydrogenobyrinic acid now contains all the major framework alterations associated with corrin synthesis []. CobH and CbiC can sometimes be fused to other enzymes in the cobalamin pathway to make bifunctional enzymes: e.g., with CobJ/CibH (precorrin-3B C17-methylase/precorrin isomerase, IPR014422 from INTERPRO) and with CbiX (precorrin isomerase, IPR012067 from INTERPRO).; GO: 0016993 precorrin-8X methylmutase activity, 0009236 cobalamin biosynthetic process; PDB: 1V9C_B 1I1H_A 1F2V_A 1OU0_B 2AFV_A 2AFR_A 3E7D_D.
Probab=38.56 E-value=82 Score=26.48 Aligned_cols=42 Identities=14% Similarity=0.245 Sum_probs=27.1
Q ss_pred HHHHhhcCCCccEEEecCCC--CHHHHHHHHHHcCCCEEEEeec
Q psy1963 58 NDYLNINKISARTVCGVPYT--ALPIATAVSVKYNIPMLIRRKD 99 (250)
Q Consensus 58 a~~i~~~~~~~d~Ivgv~~~--Gi~~a~~lA~~l~ip~~~~rk~ 99 (250)
.+.+.+.+..+.+|+|+|.| |..-+...-...++|++.++-.
T Consensus 136 l~li~~~~~~PalVIg~PVGFV~A~ESKe~L~~~~vP~I~~~G~ 179 (198)
T PF02570_consen 136 LELIEEGGVRPALVIGVPVGFVGAAESKEALMQSGVPYITVRGR 179 (198)
T ss_dssp HHHHHTTT-TTSEEEE---SSSSHHHHHHHHHHSTS-EEEESSS
T ss_pred HHHHHhcCCCCcEEEECCCcccCcHHHHHHHHhCCCCEEEEecC
Confidence 44445445678999999998 6666777777789999988764
No 122
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=37.95 E-value=44 Score=28.83 Aligned_cols=47 Identities=15% Similarity=0.229 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEEEEEeCC--ccHHHHHHhcCCcEEEeecH
Q psy1963 152 SSILETINDLKSVGIVVTDVLTIVDRE--QGGRANLKQLGYTLHSLFTL 198 (250)
Q Consensus 152 ~Tl~~a~~~L~~~Ga~vv~~~vlvd~~--~~~~~~l~~~g~~v~sl~~~ 198 (250)
+|..++++.|+..|++.++++..-... +..++.+++.|+++.+...+
T Consensus 106 t~~~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~ 154 (239)
T TIGR02990 106 TPSSAAVDGLAALGVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFTCL 154 (239)
T ss_pred CHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeeecc
Confidence 457788888899999998887764433 34567788899999888664
No 123
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=37.48 E-value=58 Score=20.29 Aligned_cols=44 Identities=23% Similarity=0.386 Sum_probs=31.9
Q ss_pred cccHHHHHHHHHHHhCCCeEEEEEEEEeCCccHHHHHHhcCCcEEEeecHHHHHHHHH
Q psy1963 149 TSGSSILETINDLKSVGIVVTDVLTIVDREQGGRANLKQLGYTLHSLFTLSSVMDILY 206 (250)
Q Consensus 149 tTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~~~~~~~l~~~g~~v~sl~~~~~l~~~~~ 206 (250)
....|+.++.+.+++.+.. .+.++|.. -.+..+++.+++++++.
T Consensus 13 ~~~~~l~~~~~~~~~~~~~---~~~V~d~~-----------~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 13 SPDDSLEEALEIMRKNGIS---RLPVVDED-----------GKLVGIISRSDLLKALL 56 (57)
T ss_dssp ETTSBHHHHHHHHHHHTSS---EEEEESTT-----------SBEEEEEEHHHHHHHHH
T ss_pred cCcCcHHHHHHHHHHcCCc---EEEEEecC-----------CEEEEEEEHHHHHhhhh
Confidence 3457799999999998843 34445433 27789999999988875
No 124
>PRK06824 translation initiation factor Sui1; Validated
Probab=37.35 E-value=1.2e+02 Score=23.29 Aligned_cols=58 Identities=19% Similarity=0.220 Sum_probs=41.4
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHhC---CCeEEEEEEEEeC--CccHHHHHHhcCCcEE
Q psy1963 136 EKGDKCVIIEDVVTSGSSILETINDLKSV---GIVVTDVLTIVDR--EQGGRANLKQLGYTLH 193 (250)
Q Consensus 136 ~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~---Ga~vv~~~vlvd~--~~~~~~~l~~~g~~v~ 193 (250)
..||.|-+|+-+-.....+.+.++.|++. |+.+..-.+.+.= .+...+.|.+.|+.+-
T Consensus 52 r~gK~VTvI~Gl~~~~~dlk~l~K~LKkk~gcGGtvkd~~IeiQGD~r~~v~~~L~~~G~~~k 114 (118)
T PRK06824 52 RGGKTVTVITGVPLAEDALKELAKELKRRCGTGGTLKDGVIEIQGDHVELLLAELLKRGFKAK 114 (118)
T ss_pred CCCceEEEEeCCcCCHHHHHHHHHHHHHHhcCCceEecCEEEEcCcHHHHHHHHHHHCCCeEe
Confidence 46899999999988999999999999985 6666654433322 2344566667777653
No 125
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=37.10 E-value=72 Score=23.02 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=28.5
Q ss_pred ecHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCC
Q psy1963 196 FTLSSVMDILYKAN-KIKVDTVEDVKKYLCNNQV 228 (250)
Q Consensus 196 ~~~~~l~~~~~~~~-~i~~~~~~~v~~~l~~~~~ 228 (250)
+|.++++++.++.| .|++++.+.|.+++++.+.
T Consensus 15 iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~i 48 (85)
T PF11116_consen 15 ITAKELLKYSKQYNISITKKQAEQIANILRGKNI 48 (85)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCC
Confidence 46889999999988 5999999999999987643
No 126
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=36.38 E-value=37 Score=24.04 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=20.6
Q ss_pred CEEEEEeccccccHHHHHHHHHHHhC
Q psy1963 139 DKCVIIEDVVTSGSSILETINDLKSV 164 (250)
Q Consensus 139 k~VlIVDDvitTG~Tl~~a~~~L~~~ 164 (250)
..+.+++|..++=.++.++++.+++.
T Consensus 12 ~~~~vi~D~ahNp~s~~a~l~~l~~~ 37 (91)
T PF02875_consen 12 NGPTVIDDYAHNPDSIRALLEALKEL 37 (91)
T ss_dssp TTEEEEEET--SHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCHHHHHHHHHHHHHh
Confidence 34777777999999999999999986
No 127
>PF14468 DUF4427: Protein of unknown function (DUF4427)
Probab=35.92 E-value=55 Score=25.35 Aligned_cols=48 Identities=21% Similarity=0.272 Sum_probs=27.1
Q ss_pred HHHHHHHHHCCceeeCCccccCccccCeEeecccccCC-H-HHHHHHHHHHHHHHhh
Q psy1963 9 NHLCLQLFDIDALKFGDFVTKVGIKTPVYLDLRGIISY-P-KLMDYLSTIINDYLNI 63 (250)
Q Consensus 9 ~~~~~~l~~~~~~~~g~f~l~sG~~s~~y~d~~~~~~~-p-~~~~~l~~~la~~i~~ 63 (250)
.++.+.|++.|.|+.. +.|+ |..|+..+.++ | ...+.+++.+|+.+..
T Consensus 47 ~~~vRALl~~grV~v~----~eGR---YLl~l~~~~s~~plr~kE~~ak~vA~~L~~ 96 (132)
T PF14468_consen 47 SEVVRALLQAGRVKVN----KEGR---YLLDLDLFDSDWPLRKKEAMAKHVAGWLRH 96 (132)
T ss_pred CHHHHHHHHcCceeec----cCce---eeeecccccCCCchHHHHHHHHHHHHHHHH
Confidence 3688999999999863 3444 44555544432 2 2333445555554443
No 128
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=35.85 E-value=86 Score=17.81 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=17.9
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHH
Q psy1963 201 VMDILYKANKIKVDTVEDVKKYL 223 (250)
Q Consensus 201 l~~~~~~~~~i~~~~~~~v~~~l 223 (250)
.++.+++.|.||+++++..++-+
T Consensus 7 ~L~~l~~~G~IseeEy~~~k~~l 29 (31)
T PF09851_consen 7 KLKELYDKGEISEEEYEQKKARL 29 (31)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHH
Confidence 45677788999999998877643
No 129
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=35.36 E-value=81 Score=21.58 Aligned_cols=30 Identities=20% Similarity=0.233 Sum_probs=25.1
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHhCCCeE
Q psy1963 136 EKGDKCVIIEDVVTSGSSILETINDLKSVGIVV 168 (250)
Q Consensus 136 ~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~v 168 (250)
.+++.|++++ .+|.....+...|++.|-..
T Consensus 54 ~~~~~iv~~c---~~g~~a~~~~~~l~~~G~~~ 83 (100)
T smart00450 54 DKDKPVVVYC---RSGNRSAKAAWLLRELGFKN 83 (100)
T ss_pred CCCCeEEEEe---CCCcHHHHHHHHHHHcCCCc
Confidence 5678899998 57888888999999999775
No 130
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=35.22 E-value=1.1e+02 Score=25.24 Aligned_cols=46 Identities=26% Similarity=0.287 Sum_probs=30.6
Q ss_pred ccHHHHHHHHHHHhCCCeEEEEEEEEeCCc-cHHHHHHhcCCcEEEe
Q psy1963 150 SGSSILETINDLKSVGIVVTDVLTIVDREQ-GGRANLKQLGYTLHSL 195 (250)
Q Consensus 150 TG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~~-~~~~~l~~~g~~v~sl 195 (250)
+|+-+.+.++.+++.+-...-++|+.++.+ .+.+..++.|+|++.+
T Consensus 10 ~gs~~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~~gip~~~~ 56 (190)
T TIGR00639 10 NGSNLQAIIDACKEGKIPASVVLVISNKPDAYGLERAAQAGIPTFVL 56 (190)
T ss_pred CChhHHHHHHHHHcCCCCceEEEEEECCccchHHHHHHHcCCCEEEE
Confidence 377778888888876544333445667653 4455667889998763
No 131
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=34.60 E-value=1.4e+02 Score=25.09 Aligned_cols=126 Identities=12% Similarity=0.200 Sum_probs=65.6
Q ss_pred EEEecCCCCHHHHHHHHHHcCCCEEEEeeccCCcCccccccceeecCCccccccccccc----ceEe------ccccCCC
Q psy1963 70 TVCGVPYTALPIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTK----KLIE------GVYEKGD 139 (250)
Q Consensus 70 ~Ivgv~~~Gi~~a~~lA~~l~ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~i~------g~~~~Gk 139 (250)
-++|++. ....+..|++|+...+.. ..+++..+++-..... .+-.+-++|. .+.+ +...+|-
T Consensus 54 GliC~~l-----t~e~~~~L~Lp~Mv~~n~-~~~~taFtVsVd~~~t--~TGISa~DRa~TIr~l~~~~~~~~df~~PGH 125 (203)
T COG0108 54 GLICVAL-----TEERAKRLGLPPMVDNNT-DAHGTAFTVSVDARET--TTGISAADRALTIRALADPGAKPSDFRRPGH 125 (203)
T ss_pred eeEEEeC-----CHHHHHhCCCccccccCC-CCCCCceEEEEecccC--cCCcCHHHHHHHHHHHhcCCCCHHHcCCCCC
Confidence 3555555 457889999998776643 2344443332221100 0000001110 1111 1123554
Q ss_pred EE-EEEec--cccccHHHHHHHHHHHhCCCeEEEEEE-EEeCCccH-------HHHHHhcCCcEEEeecHHHHHHHHHH
Q psy1963 140 KC-VIIED--VVTSGSSILETINDLKSVGIVVTDVLT-IVDREQGG-------RANLKQLGYTLHSLFTLSSVMDILYK 207 (250)
Q Consensus 140 ~V-lIVDD--vitTG~Tl~~a~~~L~~~Ga~vv~~~v-lvd~~~~~-------~~~l~~~g~~v~sl~~~~~l~~~~~~ 207 (250)
-. |.=-| |+.-.+=-.+++.+.+-+|....+++| +++.. +. .+.-+++|+++.+ ++||+++..+
T Consensus 126 VfpL~A~~ggVl~R~GHTEasVdLarlAGl~Pa~VicEi~~~d-G~mar~~~~~~fa~~h~l~~it---i~dli~yr~~ 200 (203)
T COG0108 126 VFPLRAKDGGVLERRGHTEAAVDLARLAGLKPAGVICEIMNDD-GTMARLPELEEFAKEHGLPVIT---IEDLIEYRKK 200 (203)
T ss_pred eeeeeeccCCeeccCChHHHHHHHHHHcCCCCcEEEEEEeCCC-ccccChHHHHHHHHHcCCcEEE---HHHHHHHHHh
Confidence 32 22233 444444458899999999999988877 44432 21 1222468887655 6777777654
No 132
>cd08809 CARD_CARD9 Caspase activation and recruitment domain of CARD9-like proteins. Caspase activation and recruitment domain (CARD) similar to that found in CARD9. CARD9 is a central regulator of innate immunity and is highly expressed in dendritic cells and macrophages. Together with BCL10 (B-cell lymphoma 10) and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), it forms the M-CBM signalosome (the CBM complex in myeloid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. CARD9 associates with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating wi
Probab=34.38 E-value=31 Score=24.90 Aligned_cols=39 Identities=21% Similarity=0.211 Sum_probs=31.4
Q ss_pred HHHhcCCcEEEeecHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy1963 184 NLKQLGYTLHSLFTLSSVMDILYKANKIKVDTVEDVKKY 222 (250)
Q Consensus 184 ~l~~~g~~v~sl~~~~~l~~~~~~~~~i~~~~~~~v~~~ 222 (250)
.++..-+.+.+.++.+.+..++.+.+-|+++..|+|.+-
T Consensus 4 ~lE~~R~~l~~~i~p~rl~pyLrQ~~Vl~~~deEeI~~~ 42 (86)
T cd08809 4 RLEDYRVKLISVIDPSRITPYLRQCKVLNSDDEEQVLND 42 (86)
T ss_pred HHHhHHHHhheeeCHhhcChHHHHhCCCChhhHHHHHcC
Confidence 344455677888999999999999999998888888764
No 133
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=34.25 E-value=80 Score=26.28 Aligned_cols=42 Identities=2% Similarity=-0.043 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhcCCCccEEEecCCC----CHHHHHHHHHHcCCCEEE
Q psy1963 52 YLSTIINDYLNINKISARTVCGVPYT----ALPIATAVSVKYNIPMLI 95 (250)
Q Consensus 52 ~l~~~la~~i~~~~~~~d~Ivgv~~~----Gi~~a~~lA~~l~ip~~~ 95 (250)
..+..+++.+.+.+ +++|+...+. |-.++..+|.+||.|++.
T Consensus 95 ~~a~al~~~i~~~~--p~lVL~~~t~~~~~grdlaprlAarLga~lvs 140 (202)
T cd01714 95 ATAKALAAAIKKIG--VDLILTGKQSIDGDTGQVGPLLAELLGWPQIT 140 (202)
T ss_pred HHHHHHHHHHHHhC--CCEEEEcCCcccCCcCcHHHHHHHHhCCCccc
Confidence 45566666666543 7888877665 889999999999999753
No 134
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=34.13 E-value=1.6e+02 Score=25.25 Aligned_cols=12 Identities=0% Similarity=0.224 Sum_probs=5.7
Q ss_pred CCCHHHHHHHHH
Q psy1963 210 KIKVDTVEDVKK 221 (250)
Q Consensus 210 ~i~~~~~~~v~~ 221 (250)
.+++++.+.+.+
T Consensus 129 ~~sQ~~lD~l~~ 140 (224)
T COG4565 129 QLSQKELDQLFN 140 (224)
T ss_pred ccCHHHHHHHHh
Confidence 455444444443
No 135
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=33.43 E-value=99 Score=24.64 Aligned_cols=42 Identities=10% Similarity=0.095 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhcCCCccEEEecCC-CCHHHHHHHHHHcCCCEEE
Q psy1963 52 YLSTIINDYLNINKISARTVCGVPY-TALPIATAVSVKYNIPMLI 95 (250)
Q Consensus 52 ~l~~~la~~i~~~~~~~d~Ivgv~~-~Gi~~a~~lA~~l~ip~~~ 95 (250)
..++.+++.+.+.+ +++|+...+ .|-.++..+|.+||.|++-
T Consensus 70 ~~a~al~~~i~~~~--p~~Vl~~~t~~g~~la~rlAa~L~~~~vt 112 (168)
T cd01715 70 PYAPALVALAKKEK--PSHILAGATSFGKDLAPRVAAKLDVGLIS 112 (168)
T ss_pred HHHHHHHHHHHhcC--CCEEEECCCccccchHHHHHHHhCCCcee
Confidence 45666777776543 787766554 5889999999999999753
No 136
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=33.24 E-value=1.3e+02 Score=28.44 Aligned_cols=63 Identities=17% Similarity=0.232 Sum_probs=49.2
Q ss_pred CCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEEEeCC--ccH----HHHHHh-cCCcEEEeecHHH
Q psy1963 138 GDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDRE--QGG----RANLKQ-LGYTLHSLFTLSS 200 (250)
Q Consensus 138 Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~--~~~----~~~l~~-~g~~v~sl~~~~~ 200 (250)
|-.||+|=|.-.-..|+.+.+.=++.....+.-..|+++|- +.- ++.+++ .|++|...+.-++
T Consensus 111 ~~PVvLVid~~~~s~S~AAiv~G~~~fdp~v~iaGVIlNrVgserH~~llr~Ale~~~gv~vlG~lpr~~ 180 (451)
T COG1797 111 GAPVVLVVDASGLSRSVAAIVKGFKHFDPDVNIAGVILNRVGSERHYELLRDALEEYTGVPVLGYLPRDD 180 (451)
T ss_pred CCCEEEEEeCcchhHHHHHHHHHHHhcCCCCceEEEEEecCCCHHHHHHHHHHhhhcCCCcEEEEecCCc
Confidence 55688998999999999999999999998888888999984 222 344554 6799988876444
No 137
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=33.20 E-value=80 Score=22.27 Aligned_cols=30 Identities=13% Similarity=0.093 Sum_probs=23.2
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHhCCCeE
Q psy1963 136 EKGDKCVIIEDVVTSGSSILETINDLKSVGIVV 168 (250)
Q Consensus 136 ~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~v 168 (250)
.++++|+++++ +|.....++..|+..|...
T Consensus 54 ~~~~~ivv~c~---~g~~s~~~~~~l~~~G~~~ 83 (96)
T cd01529 54 GRATRYVLTCD---GSLLARFAAQELLALGGKP 83 (96)
T ss_pred CCCCCEEEEeC---ChHHHHHHHHHHHHcCCCC
Confidence 46778999986 6777777888899999753
No 138
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=32.79 E-value=1.1e+02 Score=23.58 Aligned_cols=67 Identities=12% Similarity=0.070 Sum_probs=44.5
Q ss_pred CCEEEEEeccccccHHHH-----HHHHHHHhCCCeEEEEEEEEeCCccHHHHHHhcCCcEEEeec--HHHHHHHHHH
Q psy1963 138 GDKCVIIEDVVTSGSSIL-----ETINDLKSVGIVVTDVLTIVDREQGGRANLKQLGYTLHSLFT--LSSVMDILYK 207 (250)
Q Consensus 138 Gk~VlIVDDvitTG~Tl~-----~a~~~L~~~Ga~vv~~~vlvd~~~~~~~~l~~~g~~v~sl~~--~~~l~~~~~~ 207 (250)
+.+|..|+=+-..+.+.. .+.+.|++.|++++.+ -..++++...|++.|++++..-. +++.++.+.+
T Consensus 33 ~g~i~~vev~~np~~~~~~g~G~~~a~~l~~~gvdvvi~---~~iG~~a~~~l~~~GIkv~~~~~~~V~e~i~~~~~ 106 (121)
T COG1433 33 DGEIKNVEVIENPAASAEKGAGIRIAELLVDEGVDVVIA---SNIGPNAYNALKAAGIKVYVAPGGTVEEAIKAFLE 106 (121)
T ss_pred CCcEEEEEEeecccccccCcchHHHHHHHHHcCCCEEEE---CccCHHHHHHHHHcCcEEEecCCCCHHHHHHHHhc
Confidence 445666666655544333 3588999999886432 23357888999999999998875 5555555543
No 139
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=32.40 E-value=84 Score=21.91 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=25.6
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHhCCCeEE
Q psy1963 136 EKGDKCVIIEDVVTSGSSILETINDLKSVGIVVT 169 (250)
Q Consensus 136 ~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv 169 (250)
.+++.|+++.+ +|.+...+...|++.|...+
T Consensus 54 ~~~~~ivv~c~---~g~~s~~a~~~l~~~G~~~v 84 (96)
T cd01444 54 DRDRPVVVYCY---HGNSSAQLAQALREAGFTDV 84 (96)
T ss_pred CCCCCEEEEeC---CCChHHHHHHHHHHcCCceE
Confidence 46788999988 88888889999999987643
No 140
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=31.99 E-value=59 Score=26.24 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEEEEEeCCccH---HHHHHhcCCcEEEeec
Q psy1963 152 SSILETINDLKSVGIVVTDVLTIVDREQGG---RANLKQLGYTLHSLFT 197 (250)
Q Consensus 152 ~Tl~~a~~~L~~~Ga~vv~~~vlvd~~~~~---~~~l~~~g~~v~sl~~ 197 (250)
+-+.+.++..+..|.+.+|++..+...+.+ .+.|+..|++++|..-
T Consensus 41 tRveEiieFak~mgykkiGiAfCiGL~~EA~~~~~iL~~~gFev~sV~C 89 (157)
T PF08901_consen 41 TRVEEIIEFAKRMGYKKIGIAFCIGLRKEARILAKILEANGFEVYSVCC 89 (157)
T ss_pred chHHHHHHHHHHcCCCeeeehhhHhHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 347889999999999999999988876544 3566789999999874
No 141
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.66 E-value=15 Score=23.48 Aligned_cols=10 Identities=40% Similarity=0.843 Sum_probs=7.3
Q ss_pred cccccccCCC
Q psy1963 239 RITRCLRPFT 248 (250)
Q Consensus 239 ~~~~~~~~~~ 248 (250)
---.|||||+
T Consensus 14 ICpvCqRPFs 23 (54)
T COG4338 14 ICPVCQRPFS 23 (54)
T ss_pred hhhhhcCchH
Confidence 3457999996
No 142
>COG3535 Uncharacterized conserved protein [Function unknown]
Probab=31.29 E-value=4.1e+02 Score=24.29 Aligned_cols=112 Identities=13% Similarity=0.180 Sum_probs=61.3
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCccEEEecCCCCHH--HHHHHHHHcCCCEEEEeeccCCcCccccccceeecCCcccccc
Q psy1963 46 YPKLMDYLSTIINDYLNINKISARTVCGVPYTALP--IATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVK 123 (250)
Q Consensus 46 ~p~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~--~a~~lA~~l~ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~ 123 (250)
+++-....-+.|-+.+. .++|.|++++.||++ .--.+|..+|+|++-.--..+-+-+- ...-++--+
T Consensus 77 ~g~e~~ra~e~~~~~~~---k~v~ai~s~EiGG~Ns~ip~v~aa~~g~PvVD~DgmGRAfPEl-qMtTf~~~g------- 145 (357)
T COG3535 77 NGDEAIRAFEVLEDYLG---KPVDAIISIEIGGINSLIPLVVAAQLGLPVVDGDGMGRAFPEL-QMTTFYLHG------- 145 (357)
T ss_pred CcHHHHHHHHHHHHHhC---CceeEEEEeecCCcchhHHHHHHHhcCCceecCCcccccCcce-EEEEEEEcC-------
Confidence 33333334444444443 369999999999986 33456777999987533222211111 011111000
Q ss_pred cccccceEeccccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEE
Q psy1963 124 TYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVL 172 (250)
Q Consensus 124 ~~~~~~~i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~ 172 (250)
+....++ -...+|..+++ -.++...+-+.+.++.-+.|+...-+.
T Consensus 146 -~~~tPlv-i~d~~gn~~i~--e~v~n~w~ERiAR~~tv~~GG~~~~a~ 190 (357)
T COG3535 146 -LPATPLV-ICDERGNRVII--ETVSNKWAERIARAATVEMGGSAAVAL 190 (357)
T ss_pred -CCCCceE-EEecCCCEEEE--EeecchhHHHHHHHHHHHcCCeEEEEE
Confidence 0000111 11245655555 888999999999888888988764433
No 143
>TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family. This family includes metal-fist type transcriptional repressors of copper transport systems such as copYZAB of Enterococcus hirae and tcrYAZB (transferble copper resistance) of an Enterocuccus faecium plasmid. High levels of copper can displace zinc and prevent binding by the repressor, activating efflux by copper resistance transporters. The most closely related proteins excluded by this model are antibiotic resistance regulators including the methicillin resistance regulatory protein MecI.
Probab=31.11 E-value=1.3e+02 Score=23.28 Aligned_cols=29 Identities=17% Similarity=0.352 Sum_probs=24.3
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q psy1963 198 LSSVMDILYKANKIKVDTVEDVKKYLCNN 226 (250)
Q Consensus 198 ~~~l~~~~~~~~~i~~~~~~~v~~~l~~~ 226 (250)
...++..+.+...+|+++.+++++++.+.
T Consensus 89 ~~~ll~~l~~~~~ls~eele~L~~li~~~ 117 (130)
T TIGR02698 89 VGAVIADLIEESPLSQTDIEKLEKLLSEK 117 (130)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence 56677777777889999999999999876
No 144
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=31.01 E-value=1.1e+02 Score=20.44 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=23.3
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q psy1963 199 SSVMDILYKANKIKVDTVEDVKKYLCNN 226 (250)
Q Consensus 199 ~~l~~~~~~~~~i~~~~~~~v~~~l~~~ 226 (250)
..+++.+.+.|.||.++.+.+.+++...
T Consensus 21 K~~idk~Ve~G~iTqeqAd~ik~~id~~ 48 (59)
T PF10925_consen 21 KQIIDKYVEAGVITQEQADAIKKHIDQR 48 (59)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3578888899999999999998887653
No 145
>PRK07451 translation initiation factor Sui1; Validated
Probab=30.62 E-value=1.6e+02 Score=22.49 Aligned_cols=57 Identities=23% Similarity=0.300 Sum_probs=38.6
Q ss_pred CCCEEEEEeccccccHHHHHHHHHHHhC---CCeEEEEEEEEe--CCccHHHHHHhcCCcEE
Q psy1963 137 KGDKCVIIEDVVTSGSSILETINDLKSV---GIVVTDVLTIVD--REQGGRANLKQLGYTLH 193 (250)
Q Consensus 137 ~Gk~VlIVDDvitTG~Tl~~a~~~L~~~---Ga~vv~~~vlvd--~~~~~~~~l~~~g~~v~ 193 (250)
.||.|-+|.-+-....-+.+.++.|+.. |+.+..-.+.+- ..+.-.+.|.+.|+++-
T Consensus 50 ~GK~VTvV~Gl~~~~~dlk~LaK~LK~k~gcGGtvkd~~IelQGD~r~~v~~~L~~~Gf~~k 111 (115)
T PRK07451 50 KGKTVTVITGFQHKPETLAKLLKQLKTQCGSGGTVKDNTIEIQGDHRQKILEILIKLGYKAK 111 (115)
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCceEcCCEEEEcCcHHHHHHHHHHHCCCeEe
Confidence 6899999999987788999999999885 555544333331 11234555666777653
No 146
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=30.51 E-value=4.5e+02 Score=24.43 Aligned_cols=38 Identities=18% Similarity=0.265 Sum_probs=26.4
Q ss_pred cCCCEEEEEecccc---------------ccHHHHH---HHHHHHhCCCeEEEEEEE
Q psy1963 136 EKGDKCVIIEDVVT---------------SGSSILE---TINDLKSVGIVVTDVLTI 174 (250)
Q Consensus 136 ~~Gk~VlIVDDvit---------------TG~Tl~~---a~~~L~~~Ga~vv~~~vl 174 (250)
..|+.|+||-+... .-..+.+ ++.+++ +||+.+.+++.
T Consensus 75 Vrg~dV~ivqs~~~~~v~~~~~~~~~~~p~nd~lmeLll~idalr-agA~rIt~ViP 130 (382)
T PRK06827 75 VRGKDIYILQDVGNYSVTYNMFGEKNHMSPDDHFQDLKRTIDAIR-GKARRITVIMP 130 (382)
T ss_pred CCCCeEEEEecCCcccccccccccccCCCCcHHHHHHHHHHHHHh-cCCCeEEEEee
Confidence 47999999998642 2233444 688899 99987665553
No 147
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=30.39 E-value=1.1e+02 Score=21.69 Aligned_cols=29 Identities=14% Similarity=0.064 Sum_probs=23.3
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHhCCCe
Q psy1963 136 EKGDKCVIIEDVVTSGSSILETINDLKSVGIV 167 (250)
Q Consensus 136 ~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~ 167 (250)
.+++.|+++ +.+|.....++..|++.|-.
T Consensus 59 ~~~~~ivv~---C~~G~rs~~aa~~L~~~G~~ 87 (100)
T cd01523 59 PDDQEVTVI---CAKEGSSQFVAELLAERGYD 87 (100)
T ss_pred CCCCeEEEE---cCCCCcHHHHHHHHHHcCce
Confidence 466778776 66888888899999999986
No 148
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=30.25 E-value=1.2e+02 Score=21.99 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=14.1
Q ss_pred CCCEEEEEeccccccHHHHHHHHHHHhCC
Q psy1963 137 KGDKCVIIEDVVTSGSSILETINDLKSVG 165 (250)
Q Consensus 137 ~Gk~VlIVDDvitTG~Tl~~a~~~L~~~G 165 (250)
.+.+|++||| .-.......+.|+..|
T Consensus 4 ~~~~vLivdD---~~~~~~~~~~~l~~~g 29 (130)
T COG0784 4 SGLRVLVVDD---EPVNRRLLKRLLEDLG 29 (130)
T ss_pred CCcEEEEEcC---CHHHHHHHHHHHHHcC
Confidence 4567888888 2222333344455555
No 149
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=30.25 E-value=74 Score=25.13 Aligned_cols=61 Identities=10% Similarity=0.136 Sum_probs=36.1
Q ss_pred CccccCeEeecccccC-CHHHHHHHHHHHHHHHhhcCCCccEEEecCC-CCHHHHHHHHHHcCCCEEE
Q psy1963 30 VGIKTPVYLDLRGIIS-YPKLMDYLSTIINDYLNINKISARTVCGVPY-TALPIATAVSVKYNIPMLI 95 (250)
Q Consensus 30 sG~~s~~y~d~~~~~~-~p~~~~~l~~~la~~i~~~~~~~d~Ivgv~~-~Gi~~a~~lA~~l~ip~~~ 95 (250)
-|-..=+.++...+.. +|+ ..+..+++.+.+. ++|+|+...+ .|--++..+|.+||.|++-
T Consensus 57 ~G~d~v~~~~~~~~~~~~~~---~~a~~l~~~~~~~--~~~lVl~~~t~~g~~la~~lA~~L~~~~v~ 119 (164)
T PF01012_consen 57 YGADKVYHIDDPALAEYDPE---AYADALAELIKEE--GPDLVLFGSTSFGRDLAPRLAARLGAPLVT 119 (164)
T ss_dssp TTESEEEEEE-GGGTTC-HH---HHHHHHHHHHHHH--T-SEEEEESSHHHHHHHHHHHHHHT-EEEE
T ss_pred cCCcEEEEecCccccccCHH---HHHHHHHHHHHhc--CCCEEEEcCcCCCCcHHHHHHHHhCCCccc
Confidence 3444445555443321 233 4566667777664 4777665554 5778999999999999864
No 150
>TIGR02619 putative CRISPR-associated protein, APE2256 family. This model represents a conserved domain of about 150 amino acids found in at least five archaeal species and three bacterial species, exclusively in species with CRISPR (Clustered Regularly Interspaced Short Palidromic Repeats). In six of eight species, the member of this family is in the vicinity of a CRISPR/Cas locus.
Probab=30.11 E-value=2.6e+02 Score=22.23 Aligned_cols=51 Identities=6% Similarity=0.045 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhhcCCCccEEEecCCCCH----HHHHHHHHHcC-CCEEEEeec
Q psy1963 49 LMDYLSTIINDYLNINKISARTVCGVPYTAL----PIATAVSVKYN-IPMLIRRKD 99 (250)
Q Consensus 49 ~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi----~~a~~lA~~l~-ip~~~~rk~ 99 (250)
-+..+.+.++..+......-..++--++||+ +++..++..+| +|..|+...
T Consensus 84 Gl~nLv~~~~~~v~~~~~~g~~v~iNaTGGfK~e~~~~~l~g~~~ga~~vyYihE~ 139 (149)
T TIGR02619 84 GLSKLAREAKTDVYVARREGNVVYIAATGGFKPESTFLVLAGSLAGALPVFYIHES 139 (149)
T ss_pred HHHHHHHHHHHHHHHhcccCceEEEEcCCCcchHHHHHHHHHHHhCCCcEEEEEec
Confidence 4445555556555433222244666788887 68889999999 999988875
No 151
>PTZ00428 60S ribosomal protein L4; Provisional
Probab=29.94 E-value=1.4e+02 Score=27.65 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=19.9
Q ss_pred EEEeccccccHHHHHHHHHHHhCCC
Q psy1963 142 VIIEDVVTSGSSILETINDLKSVGI 166 (250)
Q Consensus 142 lIVDDvitTG~Tl~~a~~~L~~~Ga 166 (250)
|+|||.+.+-.--.+++++|+..|+
T Consensus 151 lVV~d~~e~~~KTK~av~~Lk~lg~ 175 (381)
T PTZ00428 151 LVVSDSVESYEKTKEAVAFLKALGA 175 (381)
T ss_pred EEEEcCcCCCCCHHHHHHHHHHcCC
Confidence 7788888775566778899999887
No 152
>PRK04940 hypothetical protein; Provisional
Probab=29.77 E-value=1.7e+02 Score=24.21 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=26.7
Q ss_pred CccEEEecCCCCHHHHHHHHHHcCCCEEEEeec
Q psy1963 67 SARTVCGVPYTALPIATAVSVKYNIPMLIRRKD 99 (250)
Q Consensus 67 ~~d~Ivgv~~~Gi~~a~~lA~~l~ip~~~~rk~ 99 (250)
+...++|...||+ +|..+|...|+|-+++=..
T Consensus 60 ~~~~liGSSLGGy-yA~~La~~~g~~aVLiNPA 91 (180)
T PRK04940 60 ERPLICGVGLGGY-WAERIGFLCGIRQVIFNPN 91 (180)
T ss_pred CCcEEEEeChHHH-HHHHHHHHHCCCEEEECCC
Confidence 4578999999995 7899999999998776544
No 153
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=29.63 E-value=1.6e+02 Score=27.07 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=27.9
Q ss_pred CccEEEecCCCC-HHHHHHHHHHcCCCEEEEeecc
Q psy1963 67 SARTVCGVPYTA-LPIATAVSVKYNIPMLIRRKDV 100 (250)
Q Consensus 67 ~~d~Ivgv~~~G-i~~a~~lA~~l~ip~~~~rk~~ 100 (250)
++|+|+|+--|- +-.|..+|..+|+||+.+=..+
T Consensus 84 ~~d~vIGVGGGk~iD~aK~~A~~~~~pfIsvPT~A 118 (360)
T COG0371 84 GADVVIGVGGGKTIDTAKAAAYRLGLPFISVPTIA 118 (360)
T ss_pred CCCEEEEecCcHHHHHHHHHHHHcCCCEEEecCcc
Confidence 589999998764 4689999999999998765543
No 154
>COG2082 CobH Precorrin isomerase [Coenzyme metabolism]
Probab=29.46 E-value=2.1e+02 Score=24.28 Aligned_cols=42 Identities=19% Similarity=0.221 Sum_probs=28.0
Q ss_pred HHHHhhcCCCccEEEecCCC--CHHHHHHHHHHcCCCEEEEeec
Q psy1963 58 NDYLNINKISARTVCGVPYT--ALPIATAVSVKYNIPMLIRRKD 99 (250)
Q Consensus 58 a~~i~~~~~~~d~Ivgv~~~--Gi~~a~~lA~~l~ip~~~~rk~ 99 (250)
.+.+.+.+.++-+|+|+|.| |..=+..--..+++|++.++-.
T Consensus 145 ~elie~~~~~palvIg~PVGFv~AaesKe~L~~~~iP~itv~G~ 188 (210)
T COG2082 145 LELIEEGGIKPALVIGVPVGFVGAAESKEALRESPIPYITVRGR 188 (210)
T ss_pred HHHHHccCCCCcEEEEcCCcccchHHHHHHHHhCCCCeEEEecC
Confidence 33444434567888888886 5555555666678888888764
No 155
>CHL00147 rpl4 ribosomal protein L4; Validated
Probab=29.40 E-value=1.7e+02 Score=24.85 Aligned_cols=83 Identities=18% Similarity=0.241 Sum_probs=46.3
Q ss_pred CEEEEEeccc---cccHHHHHHHHHHHhCCCeE-EEEEEEEeCCccHHHHHHhcCCcEEEeecHHHH--HHHHHHcC--C
Q psy1963 139 DKCVIIEDVV---TSGSSILETINDLKSVGIVV-TDVLTIVDREQGGRANLKQLGYTLHSLFTLSSV--MDILYKAN--K 210 (250)
Q Consensus 139 k~VlIVDDvi---tTG~Tl~~a~~~L~~~Ga~v-v~~~vlvd~~~~~~~~l~~~g~~v~sl~~~~~l--~~~~~~~~--~ 210 (250)
.+++||||.. .+..| ..+++.|+..|... -.++++++..... -.+...++|-.-+++.+++ .+.+. .. .
T Consensus 124 ~~l~VVd~~~~~~~~~KT-K~~~~~L~~l~~~~~~~~L~V~~~~~~n-l~~S~rNlp~V~v~~~~~lNv~dLL~-~~~vv 200 (215)
T CHL00147 124 NNITVVENFESSITNPKT-KAFINLLKKLNINLDQKILIIVPEKTEN-LYLSTRNLKNVELISADTLNIKSLLK-AKQII 200 (215)
T ss_pred CCeEEEcccccccCCCCH-HHHHHHHHHcCCCcCCceEEEECCCchH-HHHHHhCCCCcEEEecCCccHHHHhc-CCcEE
Confidence 3799999986 33444 77788888888531 2344444332211 1122345555555554443 22222 22 3
Q ss_pred CCHHHHHHHHHHHH
Q psy1963 211 IKVDTVEDVKKYLC 224 (250)
Q Consensus 211 i~~~~~~~v~~~l~ 224 (250)
++++..+.+.+.+.
T Consensus 201 it~~Al~~lee~~~ 214 (215)
T CHL00147 201 ITKEALKIIEEVYN 214 (215)
T ss_pred EEHHHHHHHHHHhc
Confidence 78888888887664
No 156
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=29.08 E-value=1.2e+02 Score=24.96 Aligned_cols=61 Identities=16% Similarity=0.184 Sum_probs=39.3
Q ss_pred ccccHHHHHHHHHHHhCCCeEEEEEEEEeCCccHHHHHHhcCCcEEEe---ecHHHHHHHHHHc
Q psy1963 148 VTSGSSILETINDLKSVGIVVTDVLTIVDREQGGRANLKQLGYTLHSL---FTLSSVMDILYKA 208 (250)
Q Consensus 148 itTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~~~~~~~l~~~g~~v~sl---~~~~~l~~~~~~~ 208 (250)
+||..++....+.+.+.+.....-.-++..++...+.|++.|++.... .+.+++++.+.+.
T Consensus 55 ftS~~av~~~~~~~~~~~~~~~~~~~~~avG~~Ta~~l~~~g~~~~~~~~~~~~~~L~~~i~~~ 118 (239)
T cd06578 55 FTSPNAVEAFFEALEELGLRALAGLKIAAVGPKTAEALREAGLTADFVPEEGDSEGLLELLELQ 118 (239)
T ss_pred EECHHHHHHHHHHHHhhCCccccCCEEEEECHHHHHHHHHcCCCceeCCCccCHHHHHHHHHhc
Confidence 588888888888887754322222333444555677777788766554 3566777777764
No 157
>TIGR00021 rpiA ribose 5-phosphate isomerase. This model describes ribose 5-phosphate isomerase, an enzyme of the non-oxidative branch of the pentose phosphate pathway.
Probab=28.99 E-value=79 Score=26.90 Aligned_cols=51 Identities=22% Similarity=0.148 Sum_probs=31.2
Q ss_pred cccccHHHHHHHHHHHhCCCe-EEEEEEEEeCCccHHHHHHhcCCcEEEeecH
Q psy1963 147 VVTSGSSILETINDLKSVGIV-VTDVLTIVDREQGGRANLKQLGYTLHSLFTL 198 (250)
Q Consensus 147 vitTG~Tl~~a~~~L~~~Ga~-vv~~~vlvd~~~~~~~~l~~~g~~v~sl~~~ 198 (250)
.+.||+|...+++.|.+.... -.. +.++.-+......+++.|+++.++-++
T Consensus 20 ~ldsGST~~~~~~~L~~~~~~~~l~-itvVt~S~~~a~~l~~~gi~v~~l~~~ 71 (218)
T TIGR00021 20 GLGTGSTVAYFIEALGERVKQEGLD-IVGVPTSKQTAELARELGIPLSSLDEV 71 (218)
T ss_pred EECCcHHHHHHHHHHHHhhhccCCC-EEEEeCCHHHHHHHHHCCCCEEcHhHC
Confidence 356999999999999764310 012 233444434455566779988765544
No 158
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=28.90 E-value=77 Score=22.44 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=21.8
Q ss_pred cHHHHHHHHHHcCCCCHHHHHHHHH
Q psy1963 197 TLSSVMDILYKANKIKVDTVEDVKK 221 (250)
Q Consensus 197 ~~~~l~~~~~~~~~i~~~~~~~v~~ 221 (250)
.+..|++.+.+.|.|++++++.|.+
T Consensus 16 ~v~~ilD~L~~~~Vit~e~~~~I~a 40 (82)
T cd08330 16 NVDPILDKLHGKKVITQEQYSEVRA 40 (82)
T ss_pred hHHHHHHHHHHCCCCCHHHHHHHHc
Confidence 5788999999999999999888775
No 159
>KOG3549|consensus
Probab=28.66 E-value=43 Score=30.67 Aligned_cols=43 Identities=23% Similarity=0.279 Sum_probs=36.0
Q ss_pred EeccccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEE
Q psy1963 131 IEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLT 173 (250)
Q Consensus 131 i~g~~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~v 173 (250)
+.|.+.-|+-||=|.-+.-+-.+-.+++++||.+|-+|+-++-
T Consensus 95 ~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAGdeVtlTV~ 137 (505)
T KOG3549|consen 95 ITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAGDEVTLTVK 137 (505)
T ss_pred hcCceEeeeeeEEeccEEeecCChHHHHHHHHhcCCEEEEEeH
Confidence 4565567888999999999999999999999999988765543
No 160
>KOG0081|consensus
Probab=28.56 E-value=1.9e+02 Score=23.75 Aligned_cols=32 Identities=22% Similarity=0.171 Sum_probs=24.1
Q ss_pred CCCccEEEecCCCCH--------HHHHHHHHHcCCCEEEE
Q psy1963 65 KISARTVCGVPYTAL--------PIATAVSVKYNIPMLIR 96 (250)
Q Consensus 65 ~~~~d~Ivgv~~~Gi--------~~a~~lA~~l~ip~~~~ 96 (250)
..+||+|++-.-.-+ ..|.++|..+|+|+.-.
T Consensus 122 cE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfET 161 (219)
T KOG0081|consen 122 CENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFET 161 (219)
T ss_pred cCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeee
Confidence 346899988765543 37889999999998643
No 161
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=28.46 E-value=2.4e+02 Score=26.19 Aligned_cols=69 Identities=13% Similarity=0.064 Sum_probs=43.7
Q ss_pred ccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEEEeCCccHHHHH---H---hcCCcEEEeecHHHHHHHHHHc
Q psy1963 135 YEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQGGRANL---K---QLGYTLHSLFTLSSVMDILYKA 208 (250)
Q Consensus 135 ~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~~~~~~~l---~---~~g~~v~sl~~~~~l~~~~~~~ 208 (250)
...|++|.|. +.+......++.|.+.|..++.+++..+... ..+.+ . .....++..-+..++.+.+.+.
T Consensus 296 ~l~gk~v~i~----~~~~~~~~l~~~L~e~G~~v~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~d~~el~~~i~~~ 370 (428)
T cd01965 296 YLGGKRVAIA----GDPDLLLGLSRFLLEMGAEPVAAVTGTDNPP-FEKRMELLASLEGIPAEVVFVGDLWDLESLAKEE 370 (428)
T ss_pred HhcCCEEEEE----cChHHHHHHHHHHHHcCCcceEEEEcCCCch-hHHHHHHhhhhcCCCceEEECCCHHHHHHHhhcc
Confidence 3689999876 3445667789999999999988777654442 12221 1 1223345555677777766653
No 162
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=27.80 E-value=95 Score=24.81 Aligned_cols=45 Identities=22% Similarity=0.302 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhcCCCccEEEecCCCCH-HHHHHHHHHcCCCEEEEeec
Q psy1963 53 LSTIINDYLNINKISARTVCGVPYTAL-PIATAVSVKYNIPMLIRRKD 99 (250)
Q Consensus 53 l~~~la~~i~~~~~~~d~Ivgv~~~Gi-~~a~~lA~~l~ip~~~~rk~ 99 (250)
.++.+++.+.+.+ ++.|+|+|-++. ++-..+...-++.++..|.+
T Consensus 3 ~~~~l~~~L~~~G--v~~vfgvpG~~~~~l~~al~~~~~i~~i~~~~E 48 (172)
T PF02776_consen 3 GAEALAEALKANG--VTHVFGVPGSGNLPLLDALEKSPGIRFIPVRHE 48 (172)
T ss_dssp HHHHHHHHHHHTT---SEEEEE--GGGHHHHHHHHHTTTSEEEE-SSH
T ss_pred HHHHHHHHHHHCC--CeEEEEEeChhHhHHHHHhhhhcceeeecccCc
Confidence 4677888888876 899999999885 45556665557889998887
No 163
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=27.71 E-value=1.3e+02 Score=24.79 Aligned_cols=49 Identities=14% Similarity=0.294 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHHHHHHcCCCEEEEe
Q psy1963 45 SYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSVKYNIPMLIRR 97 (250)
Q Consensus 45 ~~p~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~lA~~l~ip~~~~r 97 (250)
.+|... ...+.+.+.+...+..+++|-..||+ +|..+|..+++|-+.+=
T Consensus 40 ~~p~~a---~~~l~~~i~~~~~~~~~liGSSlGG~-~A~~La~~~~~~avLiN 88 (187)
T PF05728_consen 40 PFPEEA---IAQLEQLIEELKPENVVLIGSSLGGF-YATYLAERYGLPAVLIN 88 (187)
T ss_pred cCHHHH---HHHHHHHHHhCCCCCeEEEEEChHHH-HHHHHHHHhCCCEEEEc
Confidence 345543 33344445444323368999999996 56789999999976543
No 164
>COG4252 Predicted transmembrane sensor domain [Signal transduction mechanisms]
Probab=27.55 E-value=94 Score=29.07 Aligned_cols=50 Identities=16% Similarity=0.239 Sum_probs=38.8
Q ss_pred cCCCEEEEEe----ccccccH------HHHHHHHHHHhCCCeEEEEEEEEeCC-ccHHHHH
Q psy1963 136 EKGDKCVIIE----DVVTSGS------SILETINDLKSVGIVVTDVLTIVDRE-QGGRANL 185 (250)
Q Consensus 136 ~~Gk~VlIVD----DvitTG~------Tl~~a~~~L~~~Ga~vv~~~vlvd~~-~~~~~~l 185 (250)
.++.+++||| |+-.-|. ++...++.|+++|+++++.=++.|.. +.+.++|
T Consensus 57 ~~d~rIlIV~IDe~dl~~~g~wp~pr~~~A~Ll~kL~a~qp~aIgLDi~r~~P~~~~~~~L 117 (400)
T COG4252 57 PPDDRILIVAIDEQDLESLGQWPWPRAALARLLDKLAAAQPRAIGLDIYRDLPSSPGDRAL 117 (400)
T ss_pred CCCCCeEEEEecHHHHHhcCCCCCCHHHHHHHHHHHHhcCCcEEEEEEeecCCCCcccHHH
Confidence 3578888886 6666664 78889999999999999999999886 3344444
No 165
>PF04659 Arch_fla_DE: Archaeal flagella protein ; InterPro: IPR006752 Archaeal flagella are unique motility structures, and the absence of bacterial structural motility genes in the complete genome sequences of flagellated archaeal species has always suggested that archaeal flagellar biogenesis is likely mediated by novel components. FlaD and FlaE, are present in the cell as membrane-associated proteins but are not major components of isolated flagellar filaments. Interestingly, flaD was found to encode two proteins, each translated from a separate ribosome binding site. This group of sequences contain the archaeal flaD and flaE proteins. The conserved region that defines these sequences is found in the N-teminal region of flaE but towards the C-terminal region of flaD [].; GO: 0001539 ciliary or flagellar motility
Probab=27.53 E-value=1.1e+02 Score=22.70 Aligned_cols=34 Identities=18% Similarity=0.147 Sum_probs=29.3
Q ss_pred EeecHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC
Q psy1963 194 SLFTLSSVMDILYKANKIKVDTVEDVKKYLCNNQ 227 (250)
Q Consensus 194 sl~~~~~l~~~~~~~~~i~~~~~~~v~~~l~~~~ 227 (250)
..-...++++++++-|.||++-.+.+.+|++.-.
T Consensus 33 G~~~~~~~L~YY~~igWISe~V~~~L~~~~~G~~ 66 (99)
T PF04659_consen 33 GHNNAADALDYYESIGWISEEVREQLLKYLKGFK 66 (99)
T ss_pred ccccHHHHHHHHHHcCCcCHHHHHHHHHHHhCCC
Confidence 3446789999999999999999999999998654
No 166
>PRK00939 translation initiation factor Sui1; Reviewed
Probab=27.14 E-value=1.8e+02 Score=21.47 Aligned_cols=57 Identities=23% Similarity=0.271 Sum_probs=38.0
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHhC---CCeEEEEEEEEeC--CccHHHHHHhcCCcE
Q psy1963 136 EKGDKCVIIEDVVTSGSSILETINDLKSV---GIVVTDVLTIVDR--EQGGRANLKQLGYTL 192 (250)
Q Consensus 136 ~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~---Ga~vv~~~vlvd~--~~~~~~~l~~~g~~v 192 (250)
..||.|-+|.-+-..+.-+...++.|+.. |+.+..-.+.+-- .+.-.+.|.+.|++.
T Consensus 34 ~~gK~VTiI~Gl~~~~~~lk~l~k~lKk~~gcGgsvk~~~I~iQGD~r~~v~~~L~~~G~~~ 95 (99)
T PRK00939 34 RYGKEVTIIEGIDPKDIDLKELAKKLKSKLACGGTVKDGRIELQGDHRERVKELLIKMGFSE 95 (99)
T ss_pred CCCceEEEEeCCCCcchhHHHHHHHHHHHhCCCceEECCEEEEeCcHHHHHHHHHHHcCCCh
Confidence 57899999999998999999999999885 6666543322211 122344455556553
No 167
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=26.52 E-value=1.7e+02 Score=23.35 Aligned_cols=45 Identities=18% Similarity=0.307 Sum_probs=33.2
Q ss_pred HHHHHHHHHhhcCCCccEEEecCCCCH-HHHHHHHHHcCCCEEEEeec
Q psy1963 53 LSTIINDYLNINKISARTVCGVPYTAL-PIATAVSVKYNIPMLIRRKD 99 (250)
Q Consensus 53 l~~~la~~i~~~~~~~d~Ivgv~~~Gi-~~a~~lA~~l~ip~~~~rk~ 99 (250)
.++.+++.+.+.+ ++.|+|+|-+.. ++-..+.+.-+++++..|.+
T Consensus 2 ~~~~l~~~L~~~G--v~~vFgipG~~~~~l~~al~~~~~i~~v~~rhE 47 (164)
T cd07039 2 VADVIVETLENWG--VKRVYGIPGDSINGLMDALRREGKIEFIQVRHE 47 (164)
T ss_pred HHHHHHHHHHHCC--CCEEEEcCCCchHHHHHHHhhcCCCeEEEeCCH
Confidence 3567888888876 899999998865 44445544357888888876
No 168
>PRK05319 rplD 50S ribosomal protein L4; Provisional
Probab=26.51 E-value=1.5e+02 Score=24.86 Aligned_cols=82 Identities=16% Similarity=0.255 Sum_probs=44.4
Q ss_pred CCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEEEeCC-ccHHHHHHhcCCcEEEeecHHHH--HHHHH-HcCCCCH
Q psy1963 138 GDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDRE-QGGRANLKQLGYTLHSLFTLSSV--MDILY-KANKIKV 213 (250)
Q Consensus 138 Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~-~~~~~~l~~~g~~v~sl~~~~~l--~~~~~-~~~~i~~ 213 (250)
..+++||||+.-+-..-..+++.|+..|. -.++++++.. ++... ...+++-.-++..+++ .+.+. +.=.+++
T Consensus 119 ~~~l~Vvd~~~~~~~KTk~~~~~l~~lg~--~~~Lii~~~~~~n~~~--a~rNi~~v~v~~~~~ln~~dll~~~~vv~t~ 194 (205)
T PRK05319 119 EGRLVVVDDLSLEAPKTKELAAKLKNLGL--KKVLIVTDEVDENLYL--SARNLPNVDVLPAQGLNVYDLLRADKVVLTK 194 (205)
T ss_pred cCCeEEEeccccCCCCHHHHHHHHHHcCC--CceEEEECCCchHHHH--HHhCCCCcEEEecCCccHHHhcCCCcEEEEH
Confidence 34699999986555566778999999886 2344444432 22121 1234444444444333 22221 1113676
Q ss_pred HHHHHHHHHH
Q psy1963 214 DTVEDVKKYL 223 (250)
Q Consensus 214 ~~~~~v~~~l 223 (250)
+..+.+.+.+
T Consensus 195 ~Al~~l~~~~ 204 (205)
T PRK05319 195 AAVKKLEERL 204 (205)
T ss_pred HHHHHHHHHh
Confidence 7677766643
No 169
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=26.38 E-value=1.3e+02 Score=24.24 Aligned_cols=42 Identities=7% Similarity=0.109 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhcCCCccEEEecCC-CCHHHHHHHHHHcCCCEEE
Q psy1963 52 YLSTIINDYLNINKISARTVCGVPY-TALPIATAVSVKYNIPMLI 95 (250)
Q Consensus 52 ~l~~~la~~i~~~~~~~d~Ivgv~~-~Gi~~a~~lA~~l~ip~~~ 95 (250)
..++.+++.+.+. ++++|+...+ .|-.++..+|.+||.|++.
T Consensus 78 ~~a~~l~~~i~~~--~p~~Vl~g~t~~g~~la~rlA~~L~~~~vs 120 (181)
T cd01985 78 ATAKALAALIKKE--KPDLILAGATSIGKQLAPRVAALLGVPQIS 120 (181)
T ss_pred HHHHHHHHHHHHh--CCCEEEECCcccccCHHHHHHHHhCCCcce
Confidence 3456666666654 3787765554 5888999999999999753
No 170
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=26.18 E-value=1.3e+02 Score=20.39 Aligned_cols=33 Identities=27% Similarity=0.241 Sum_probs=30.7
Q ss_pred ccCCCEEEEEeccccccHHHHHHHHHHHhCCCe
Q psy1963 135 YEKGDKCVIIEDVVTSGSSILETINDLKSVGIV 167 (250)
Q Consensus 135 ~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~ 167 (250)
+..|++++=|++.-.++.|..++.++++.++..
T Consensus 43 l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~ 75 (81)
T PF00595_consen 43 LKVGDRILEINGQSVRGMSHDEVVQLLKSASNP 75 (81)
T ss_dssp SSTTEEEEEETTEESTTSBHHHHHHHHHHSTSE
T ss_pred cchhhhhheeCCEeCCCCCHHHHHHHHHCCCCc
Confidence 678999999999999999999999999999873
No 171
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=26.04 E-value=2.8e+02 Score=25.50 Aligned_cols=68 Identities=15% Similarity=0.069 Sum_probs=43.3
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEEE-eCCc--cHHHHHHhcCCcEEEeecHHHHHHHHHHc
Q psy1963 136 EKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIV-DREQ--GGRANLKQLGYTLHSLFTLSSVMDILYKA 208 (250)
Q Consensus 136 ~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vlv-d~~~--~~~~~l~~~g~~v~sl~~~~~l~~~~~~~ 208 (250)
..||+|.|+-| +.-....++.|.+.|.+++.+..-. ++.. ...+.+. .+..+..-.++.++.+.+.+.
T Consensus 274 l~Gkrv~i~g~----~~~~~~la~~L~elGm~vv~~~t~~~~~~~~~~~~~~l~-~~~~v~~~~d~~~l~~~i~~~ 344 (396)
T cd01979 274 LRGKSIFFMGD----NLLEIPLARFLTRCGMIVVEVGTPYLDKRFQAAELELLP-PMVRIVEKPDNYRQLDRIREL 344 (396)
T ss_pred hcCCEEEEECC----chHHHHHHHHHHHCCCEEEeeCCCcCChHHHHHHHHhcC-CCCeEEECCCHHHHHHHHHhc
Confidence 58999998765 4467788899999999998875422 2211 1112222 355555556777777777663
No 172
>PF09651 Cas_APE2256: CRISPR-associated protein (Cas_APE2256); InterPro: IPR013442 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 150 amino acids found in a family of Cas proteins in at least five archaeal and three bacterial species. In six of eight species, the protein is encoded the vicinity of a CRISPR/Cas locus.; PDB: 3QYF_A.
Probab=25.92 E-value=1.1e+02 Score=23.83 Aligned_cols=50 Identities=12% Similarity=0.054 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhhcCCCccEEEecCCCCH----HHHHHHHHHcCCCEEEEeec
Q psy1963 50 MDYLSTIINDYLNINKISARTVCGVPYTAL----PIATAVSVKYNIPMLIRRKD 99 (250)
Q Consensus 50 ~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi----~~a~~lA~~l~ip~~~~rk~ 99 (250)
+..+.+.+++.+.+....-.-++--++||+ +++..+|..++.|..|+...
T Consensus 73 l~~Lv~~~~~~v~~~~~~~~~v~~n~TGGfK~~~~~~~~~g~~~~~~v~Yi~E~ 126 (136)
T PF09651_consen 73 LRNLVRWVAEEVKNYKGRGYEVIFNATGGFKAEIAYLTLLGMLYGDPVYYIFEE 126 (136)
T ss_dssp HHHHHHHTHHHHHHHHHTT-EEEEE-SSS-HHHHHHHHHHHHHT--EEEEEETT
T ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEeCCChHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 334455555555522112344666688997 68889999999999998874
No 173
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=25.88 E-value=2.3e+02 Score=26.76 Aligned_cols=58 Identities=17% Similarity=0.098 Sum_probs=41.3
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEE-EEeCCccHHHHHHhcCCcEEEee
Q psy1963 136 EKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLT-IVDREQGGRANLKQLGYTLHSLF 196 (250)
Q Consensus 136 ~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~v-lvd~~~~~~~~l~~~g~~v~sl~ 196 (250)
++|.+|.++==+... -...++.|.+.||++..+.+ ...-.......|.+.|++++++-
T Consensus 46 l~G~~i~~~~Hl~~~---Ta~l~~~L~~~GA~v~~~~~np~Stqd~vaaaL~~~gi~v~a~~ 104 (425)
T PRK05476 46 LKGARIAGCLHMTIQ---TAVLIETLKALGAEVRWASCNPFSTQDDVAAALAAAGIPVFAWK 104 (425)
T ss_pred CCCCEEEEEEecccc---HHHHHHHHHHcCCEEEEEeCCCcccCHHHHHHHHHCCceEEecC
Confidence 578888777655443 33557778899999876665 44334566778888999999973
No 174
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=25.66 E-value=25 Score=21.89 Aligned_cols=19 Identities=21% Similarity=0.420 Sum_probs=16.5
Q ss_pred ccccccHHHHHHHHHHHhC
Q psy1963 146 DVVTSGSSILETINDLKSV 164 (250)
Q Consensus 146 DvitTG~Tl~~a~~~L~~~ 164 (250)
..+|.|.|+.++++.++++
T Consensus 23 g~~t~G~t~eea~~~~~ea 41 (48)
T PF03681_consen 23 GCFTQGDTLEEALENAKEA 41 (48)
T ss_dssp TCEEEESSHHHHHHHHHHH
T ss_pred ChhhcCCCHHHHHHHHHHH
Confidence 5689999999999988874
No 175
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=24.79 E-value=1.4e+02 Score=24.65 Aligned_cols=29 Identities=28% Similarity=0.290 Sum_probs=15.6
Q ss_pred ecccccc-HHHHHHHHHHHhCCCeEEEEEE
Q psy1963 145 EDVVTSG-SSILETINDLKSVGIVVTDVLT 173 (250)
Q Consensus 145 DDvitTG-~Tl~~a~~~L~~~Ga~vv~~~v 173 (250)
||--..| .....+++.|++.|..+..+.+
T Consensus 140 Dg~~~~~~~~~~~~a~~l~~~GI~i~tVGi 169 (193)
T cd01477 140 SDYNDEGSNDPRPIAARLKSTGIAIITVAF 169 (193)
T ss_pred cCccCCCCCCHHHHHHHHHHCCCEEEEEEe
Confidence 5544444 3345556666777666544444
No 176
>TIGR01158 SUI1_rel translation initation factor SUI1, putative, prokaryotic. This family of archaeal and bacterial proteins is homologous to the eukaryotic translation intiation factor SUI1 involved in directing the ribosome to the proper start site of translation by functioning in concert with eIF-2 and the initiator tRNA-Met.
Probab=24.52 E-value=2.5e+02 Score=20.80 Aligned_cols=58 Identities=26% Similarity=0.329 Sum_probs=39.7
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHhC---CCeEEEEEEEEeC--CccHHHHHHhcCCcEE
Q psy1963 136 EKGDKCVIIEDVVTSGSSILETINDLKSV---GIVVTDVLTIVDR--EQGGRANLKQLGYTLH 193 (250)
Q Consensus 136 ~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~---Ga~vv~~~vlvd~--~~~~~~~l~~~g~~v~ 193 (250)
..||.|-+|.-+-..+--+.+.++.|++. |+.+..-.+.+-= .+.-.+.|.+.|+++-
T Consensus 35 r~gK~VTvV~Gl~~~~~~l~~l~k~LKk~~gcGgtvk~~~IeiQGD~~~~v~~~L~~~G~~~k 97 (101)
T TIGR01158 35 RKGKGVTIIEGLDLSDIDLKELAKELKSKCGCGGTVKDGVIEIQGDHRDRVKDLLEKKGFKVK 97 (101)
T ss_pred CCCCEEEEEeCCcCchhhHHHHHHHHHHHhcCCeeEeCCEEEEeCcHHHHHHHHHHHcCCCee
Confidence 46899999999988888999999999885 6666544333321 1233455666777653
No 177
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=24.44 E-value=2.6e+02 Score=19.73 Aligned_cols=40 Identities=15% Similarity=0.004 Sum_probs=28.2
Q ss_pred HHHHHHHHhCCCeEEEEEEEEeCCccHHHHHHhcCCcEEEeec
Q psy1963 155 LETINDLKSVGIVVTDVLTIVDREQGGRANLKQLGYTLHSLFT 197 (250)
Q Consensus 155 ~~a~~~L~~~Ga~vv~~~vlvd~~~~~~~~l~~~g~~v~sl~~ 197 (250)
....+.|.+.|++++-+. .-+++....|++.|+.++....
T Consensus 53 ~~~~~~l~~~~v~~vi~~---~iG~~~~~~l~~~gI~v~~~~~ 92 (103)
T cd00851 53 GKAAEFLADEGVDVVIVG---GIGPRALNKLRNAGIKVYKGAE 92 (103)
T ss_pred hHHHHHHHHcCCCEEEeC---CCCcCHHHHHHHCCCEEEEcCC
Confidence 446667777777765443 3456778889999999987663
No 178
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=24.16 E-value=82 Score=29.60 Aligned_cols=36 Identities=14% Similarity=0.121 Sum_probs=26.4
Q ss_pred EEEEEec-cccccHHHHHHHHHHHhCCCeEEEEEEEEeC
Q psy1963 140 KCVIIED-VVTSGSSILETINDLKSVGIVVTDVLTIVDR 177 (250)
Q Consensus 140 ~VlIVDD-vitTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~ 177 (250)
.++|||| -.++=.++.++++.|++...+. ++|+-+.
T Consensus 326 g~~iIDDsYn~nP~s~~aaL~~l~~~~~r~--i~VlG~m 362 (453)
T PRK10773 326 GQLLLDDSYNANVGSMTAAAQVLAEMPGYR--VMVVGDM 362 (453)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHhCCCCE--EEEECCh
Confidence 4799999 5667799999999999864333 4555443
No 179
>PF04189 Gcd10p: Gcd10p family; InterPro: IPR007316 eIF-3 is a multisubunit complex that stimulates translation initiation in vitro at several different steps. This family corresponds to the gamma subunit of eIF3 [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation
Probab=24.13 E-value=2e+02 Score=25.72 Aligned_cols=54 Identities=11% Similarity=0.161 Sum_probs=28.5
Q ss_pred ccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEEEeCCccHHHHHHhcCCcEE
Q psy1963 135 YEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQGGRANLKQLGYTLH 193 (250)
Q Consensus 135 ~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~~~~~~~l~~~g~~v~ 193 (250)
+..|.|+|+||| +.|-=..++++ ..|+.-..+.+...-.+.....|+.+|++-.
T Consensus 199 V~~g~r~Lv~D~--~~GLv~aav~e---Rmgg~G~i~~~~~~~~~p~~~~l~~~nf~~~ 252 (299)
T PF04189_consen 199 VHAGGRVLVVDD--CGGLVVAAVAE---RMGGSGNIITLHHGNSPPNLDILKYFNFDEE 252 (299)
T ss_pred CCCCCeEEEEeC--CCChHHHHHHH---HhCCCceEEEEeeCCCCCCHHHHHhCCCChh
Confidence 358999999999 55544444444 4444322222222222344555666674433
No 180
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=24.09 E-value=3.3e+02 Score=23.98 Aligned_cols=56 Identities=16% Similarity=0.199 Sum_probs=35.4
Q ss_pred CEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEEEeCCccHHHHHHhcCCcEEEeec
Q psy1963 139 DKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQGGRANLKQLGYTLHSLFT 197 (250)
Q Consensus 139 k~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~~~~~~~l~~~g~~v~sl~~ 197 (250)
+|+.|. +-.+|+.+.+.++..++......-++|+-++. ......++.|+|++.+-.
T Consensus 85 ~ki~vl--~Sg~g~nl~~l~~~~~~g~l~~~i~~visn~~-~~~~~A~~~gIp~~~~~~ 140 (280)
T TIGR00655 85 KRVAIL--VSKEDHCLGDLLWRWYSGELDAEIALVISNHE-DLRSLVERFGIPFHYIPA 140 (280)
T ss_pred cEEEEE--EcCCChhHHHHHHHHHcCCCCcEEEEEEEcCh-hHHHHHHHhCCCEEEcCC
Confidence 455543 23467788888888776544444556666776 333345678999987654
No 181
>KOG2978|consensus
Probab=24.06 E-value=4.5e+02 Score=22.28 Aligned_cols=92 Identities=21% Similarity=0.255 Sum_probs=62.5
Q ss_pred HHHHHHHHHhhcCCCccEEE---ecCCCCHHHHHHHHHHcCCCEEEEeeccCCcCccccccceeecCCcccccccccccc
Q psy1963 53 LSTIINDYLNINKISARTVC---GVPYTALPIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKK 129 (250)
Q Consensus 53 l~~~la~~i~~~~~~~d~Iv---gv~~~Gi~~a~~lA~~l~ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (250)
+...++..+.+.+.++.+|+ +-|.|-.-.|..++...|-+-+..+.+.+..|.++ .
T Consensus 21 ~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~d~i~l~pR~~klGLgt---------------------A 79 (238)
T KOG2978|consen 21 ITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYGEDNILLKPRTKKLGLGT---------------------A 79 (238)
T ss_pred eHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhCCCcEEEEeccCcccchH---------------------H
Confidence 44455666666665677666 45567788999999999988766655544455541 1
Q ss_pred eEec-cccCCCEEEEEe-ccccccHHHHHHHHHHHhCC
Q psy1963 130 LIEG-VYEKGDKCVIIE-DVVTSGSSILETINDLKSVG 165 (250)
Q Consensus 130 ~i~g-~~~~Gk~VlIVD-DvitTG~Tl~~a~~~L~~~G 165 (250)
.+.| ....|+-++++| |.---=.++-+.++..++..
T Consensus 80 y~hgl~~a~g~fiviMDaDlsHhPk~ipe~i~lq~~~~ 117 (238)
T KOG2978|consen 80 YIHGLKHATGDFIVIMDADLSHHPKFIPEFIRLQKEGN 117 (238)
T ss_pred HHhhhhhccCCeEEEEeCccCCCchhHHHHHHHhhccC
Confidence 2223 234777788888 66677788999999887765
No 182
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=23.97 E-value=1.1e+02 Score=22.01 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.2
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHH
Q psy1963 198 LSSVMDILYKANKIKVDTVEDVKK 221 (250)
Q Consensus 198 ~~~l~~~~~~~~~i~~~~~~~v~~ 221 (250)
+.+|++.+.+.|-+|+++.+.|..
T Consensus 16 v~~ild~L~~~gvlt~~~~e~I~~ 39 (86)
T cd08323 16 TSYIMDHMISDGVLTLDEEEKVKS 39 (86)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHc
Confidence 678999999999999988888876
No 183
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=23.90 E-value=2.3e+02 Score=24.79 Aligned_cols=37 Identities=22% Similarity=0.408 Sum_probs=29.5
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEEEeCCc
Q psy1963 136 EKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQ 179 (250)
Q Consensus 136 ~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~~ 179 (250)
.+|++|+|+ -+|++.++++..|.+.|+..+ .+++|..
T Consensus 123 ~~~k~vlvl----GaGGaarai~~aL~~~G~~~i---~I~nRt~ 159 (282)
T TIGR01809 123 LAGFRGLVI----GAGGTSRAAVYALASLGVTDI---TVINRNP 159 (282)
T ss_pred cCCceEEEE----cCcHHHHHHHHHHHHcCCCeE---EEEeCCH
Confidence 468899865 789999999999999998653 3458873
No 184
>PRK08286 cbiC cobalt-precorrin-8X methylmutase; Validated
Probab=23.76 E-value=2.4e+02 Score=24.05 Aligned_cols=41 Identities=12% Similarity=0.263 Sum_probs=26.1
Q ss_pred HHHhhcCCCccEEEecCCC--CHHHHHHHHHHcCCCEEEEeec
Q psy1963 59 DYLNINKISARTVCGVPYT--ALPIATAVSVKYNIPMLIRRKD 99 (250)
Q Consensus 59 ~~i~~~~~~~d~Ivgv~~~--Gi~~a~~lA~~l~ip~~~~rk~ 99 (250)
+.+.+.+..+.+|+|+|.| |..=+...-...++|++.++-.
T Consensus 150 ~li~~g~~~PalVIG~PVGFV~AaEsKe~L~~~~iP~It~~Gr 192 (214)
T PRK08286 150 EMVEHGQLQVDAVVGVPVGFVGAAESKEALTESDLPAIAALGR 192 (214)
T ss_pred HHHHcCCCCCcEEEEeCCccccHHHHHHHHHhCCCCEEEEecC
Confidence 3444334568899999987 3333333334578999888764
No 185
>PLN02423 phosphomannomutase
Probab=23.59 E-value=1.7e+02 Score=24.96 Aligned_cols=58 Identities=10% Similarity=0.035 Sum_probs=47.8
Q ss_pred ccccccHHHHHHHHHHHhCCCeEEEEEEEEeC---CccHHHHHHhcCCcEEEeecHHHHHHHHHH
Q psy1963 146 DVVTSGSSILETINDLKSVGIVVTDVLTIVDR---EQGGRANLKQLGYTLHSLFTLSSVMDILYK 207 (250)
Q Consensus 146 DvitTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~---~~~~~~~l~~~g~~v~sl~~~~~l~~~~~~ 207 (250)
|++..|.+-..+++.|. ..-.++++-|. +.+-.+.|+..|+..+..-.++|..+++.+
T Consensus 182 Di~~~gvnKg~al~~L~----~~~e~~aFGD~~~~~~ND~eMl~~~~~~~~~~~~~~~~~~~~~~ 242 (245)
T PLN02423 182 DVFPQGWDKTYCLQFLE----DFDEIHFFGDKTYEGGNDHEIFESERTIGHTVTSPDDTREQCTA 242 (245)
T ss_pred EEeeCCCCHHHHHHHhc----CcCeEEEEeccCCCCCCcHHHHhCCCcceEEeCCHHHHHHHHHH
Confidence 89999999999999998 55567888886 345577887779999999999999888764
No 186
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=23.46 E-value=1.7e+02 Score=24.62 Aligned_cols=87 Identities=13% Similarity=0.124 Sum_probs=44.2
Q ss_pred CCCEEEEEeccccccHHHHHH-HHHHHhC-CCeEEEEEEEEeCCccHHHHHHhcCCcEEEeec--HHHHHHHHHHcCCCC
Q psy1963 137 KGDKCVIIEDVVTSGSSILET-INDLKSV-GIVVTDVLTIVDREQGGRANLKQLGYTLHSLFT--LSSVMDILYKANKIK 212 (250)
Q Consensus 137 ~Gk~VlIVDDvitTG~Tl~~a-~~~L~~~-Ga~vv~~~vlvd~~~~~~~~l~~~g~~v~sl~~--~~~l~~~~~~~~~i~ 212 (250)
.||.|+-.-+.+++|+-..++ ...+-.. ++.+-.+.++.... ...+.|++.|+.+..+-. +++..+-+.+ ..+|
T Consensus 77 ~~kpVia~~~~~~sggy~lasaad~I~a~p~~~vg~iGv~~~~~-~~~~ll~klGv~~~~~~~G~~K~~~~~~~~-~~~s 154 (222)
T cd07018 77 SGKPVIAYADGYSQGQYYLASAADEIYLNPSGSVELTGLSAETL-FFKGLLDKLGVEVQVFRVGEYKSAVEPFTR-DDMS 154 (222)
T ss_pred hCCeEEEEeCCCCchhhhhhhhCCEEEECCCceEEeeccchhhh-hHHHHHHHcCCcEEEEEEeccccccchhhc-ccCC
Confidence 356666666667766654443 3322222 22222222333332 345667778888776653 4443333332 2466
Q ss_pred HHHHHHHHHHHHh
Q psy1963 213 VDTVEDVKKYLCN 225 (250)
Q Consensus 213 ~~~~~~v~~~l~~ 225 (250)
+++.+.+.+++.+
T Consensus 155 ~~~r~~~~~~l~~ 167 (222)
T cd07018 155 PEAREQTQALLDS 167 (222)
T ss_pred HHHHHHHHHHHHH
Confidence 6776666665554
No 187
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=23.35 E-value=2.1e+02 Score=21.08 Aligned_cols=38 Identities=16% Similarity=0.217 Sum_probs=20.9
Q ss_pred HHHHHHHHHhCCCeEEEEEEEEeCCccHHHHHHhcCCcEEEeecH
Q psy1963 154 ILETINDLKSVGIVVTDVLTIVDREQGGRANLKQLGYTLHSLFTL 198 (250)
Q Consensus 154 l~~a~~~L~~~Ga~vv~~~vlvd~~~~~~~~l~~~g~~v~sl~~~ 198 (250)
+...++.+.+.|.++.++ ++..+.|++.|+++..+..+
T Consensus 14 ~~~~a~~l~~~G~~i~AT-------~gTa~~L~~~Gi~~~~v~~~ 51 (112)
T cd00532 14 LVDLAPKLSSDGFPLFAT-------GGTSRVLADAGIPVRAVSKR 51 (112)
T ss_pred HHHHHHHHHHCCCEEEEC-------cHHHHHHHHcCCceEEEEec
Confidence 444555555666554332 24555666667766666554
No 188
>PRK00702 ribose-5-phosphate isomerase A; Provisional
Probab=23.33 E-value=1.1e+02 Score=26.05 Aligned_cols=51 Identities=20% Similarity=0.091 Sum_probs=30.6
Q ss_pred cccccHHHHHHHHHHHhCCCeEEEEEEEEeCCccHHHHHHhcCCcEEEeecH
Q psy1963 147 VVTSGSSILETINDLKSVGIVVTDVLTIVDREQGGRANLKQLGYTLHSLFTL 198 (250)
Q Consensus 147 vitTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~~~~~~~l~~~g~~v~sl~~~ 198 (250)
.+.||+|+..+++.|.+...+-.. +.++.-+......+.+.|+++.++-.+
T Consensus 25 gLgsGST~~~l~~~L~~~~~~~~~-itvVt~S~~~a~~l~~~gi~v~~l~~~ 75 (220)
T PRK00702 25 GLGTGSTAAYFIDALGERVKEGLI-IGGVPTSEASTELAKELGIPLFDLNEV 75 (220)
T ss_pred EECCcHHHHHHHHHHHhhhccCCC-EEEECCcHHHHHHHHhCCCeEEcHHHC
Confidence 457999999999999654211011 233344434444555678887765544
No 189
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=23.02 E-value=1.8e+02 Score=27.40 Aligned_cols=62 Identities=15% Similarity=0.233 Sum_probs=38.0
Q ss_pred CCEEEEEeccccccHHHHHHHHHHHhC--CCeEEEEEEEEeCCccH------HHHHHhcCCcEEEeecHHHH
Q psy1963 138 GDKCVIIEDVVTSGSSILETINDLKSV--GIVVTDVLTIVDREQGG------RANLKQLGYTLHSLFTLSSV 201 (250)
Q Consensus 138 Gk~VlIVDDvitTG~Tl~~a~~~L~~~--Ga~vv~~~vlvd~~~~~------~~~l~~~g~~v~sl~~~~~l 201 (250)
+-.|++|-|.-..+.|+.+.+..+... +.++ ..+++++-... .+.+++.|+|+...+...+.
T Consensus 114 ~~pviLV~~~~~~~~~~a~l~~~~~~~~~~i~i--~GvI~N~v~~~~~~~~l~~~l~~~gipvLG~IP~~~~ 183 (451)
T PRK01077 114 GAPVVLVVDASGMAQSAAALVLGFATFDPDVRI--AGVILNRVGSERHYQLLREALERCGIPVLGALPRDAA 183 (451)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHHHhCCCCCE--EEEEEECCCChhHHHHHHHHHHhcCCCEEEEeeCCcc
Confidence 556888877655566777666655553 4444 45566774211 33445578998888876543
No 190
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=22.83 E-value=53 Score=28.94 Aligned_cols=59 Identities=15% Similarity=0.076 Sum_probs=37.0
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEE-EeCCccHHHHHHhcCCcEEEeec
Q psy1963 136 EKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTI-VDREQGGRANLKQLGYTLHSLFT 197 (250)
Q Consensus 136 ~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vl-vd~~~~~~~~l~~~g~~v~sl~~ 197 (250)
++|.||-..== -|-.|. ..++.|++.||+|..+.+= ..-.......|.+.|++|+++-.
T Consensus 41 l~G~rIa~cLH--le~kTA-~L~~tL~a~GAeV~~~~sNplSTQDdvaAAL~~~Gi~V~A~~g 100 (268)
T PF05221_consen 41 LKGARIAGCLH--LEAKTA-VLAETLKALGAEVRWTGSNPLSTQDDVAAALAEEGIPVFAWKG 100 (268)
T ss_dssp TTTEEEEEES----SHHHH-HHHHHHHHTTEEEEEEESSTTT--HHHHHHHHHTTEEEEE-TT
T ss_pred CCCCEEEEEEe--chHHHH-HHHHHHHHcCCeEEEecCCCcccchHHHHHhccCCceEEEeCC
Confidence 57877765422 133332 3577899999999776652 23334566778889999999754
No 191
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the conversion of phosphosugars into glycolysis intermediates, which are precursors for the synthesis of amino acids, vitamins, nucleotides, and cell wall components. In plants, RPI is part of the Calvin cycle as ribulose 5-phosphate is the carbon dioxide receptor in the first dark reaction of photosynthesis. There are two unrelated types of RPIs (A and B), which catalyze the same reaction, at least one type of RPI is present in an organism. RPI_A is more widely distributed than RPI_B in bacteria, eukaryotes, and archaea.
Probab=22.51 E-value=1.3e+02 Score=25.38 Aligned_cols=48 Identities=19% Similarity=0.112 Sum_probs=27.4
Q ss_pred ccccHHHHHHHHHHHhCCCe-EEEEEEEEeCCccHHHHHHhcCCcEEEee
Q psy1963 148 VTSGSSILETINDLKSVGIV-VTDVLTIVDREQGGRANLKQLGYTLHSLF 196 (250)
Q Consensus 148 itTG~Tl~~a~~~L~~~Ga~-vv~~~vlvd~~~~~~~~l~~~g~~v~sl~ 196 (250)
+.||+|+...++.|.+.... -.. +.++.-+......+.+.|++++.+-
T Consensus 21 ldsGST~~~l~~~L~~~~~~~~~~-itvVTnS~~~a~~l~~~~i~vi~lg 69 (213)
T cd01398 21 LGTGSTVAYFIEALGERVREEGLN-IVGVPTSFQTEELARELGIPLTDLD 69 (213)
T ss_pred ECchHHHHHHHHHHHHhhhccCCC-EEEEeCcHHHHHHHHhCCCeEEeCC
Confidence 46899999999999764210 011 2333433333344545577777654
No 192
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=22.25 E-value=97 Score=30.00 Aligned_cols=52 Identities=13% Similarity=0.117 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCccEEEecCCCCHHHHHHHHHHcCCCEEEEe
Q psy1963 46 YPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSVKYNIPMLIRR 97 (250)
Q Consensus 46 ~p~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~Gi~~a~~lA~~l~ip~~~~r 97 (250)
+|.+-+.+-+...+...+.+..+|+|+|==..|=..|..+|.++|+|++..-
T Consensus 380 WPyLe~fa~d~~~~i~~e~~~~PdlI~GnYsDgnlvA~LLs~~lgv~~~~ia 431 (550)
T PF00862_consen 380 WPYLEEFADDAEREILAELQGKPDLIIGNYSDGNLVASLLSRKLGVTQCFIA 431 (550)
T ss_dssp GGGHHHHHHHHHHHHHHHHTS--SEEEEEHHHHHHHHHHHHHHHT-EEEEE-
T ss_pred hhhHHHHHHHHHHHHHHHhCCCCcEEEeccCcchHHHHHHHhhcCCceehhh
Confidence 4554433333222222333446899999888788899999999999987653
No 193
>PRK05575 cbiC precorrin-8X methylmutase; Validated
Probab=22.25 E-value=2.7e+02 Score=23.51 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCccEEEecCCC--CHHHHHHHHHHcCCCEEEEeec
Q psy1963 45 SYPKLMDYLSTIINDYLNINKISARTVCGVPYT--ALPIATAVSVKYNIPMLIRRKD 99 (250)
Q Consensus 45 ~~p~~~~~l~~~la~~i~~~~~~~d~Ivgv~~~--Gi~~a~~lA~~l~ip~~~~rk~ 99 (250)
+-|-.+-.+. +.+.+....+.+|+|+|.| |..=+...-...++|++..+-.
T Consensus 134 NAPTAL~~l~----~li~~g~~~PalVIG~PVGFV~A~ESKe~L~~~~vP~It~~G~ 186 (204)
T PRK05575 134 NAPTALYKLK----ELIKEGKANPKFIIAVPVGFVGAAESKEELEKLDIPYITVRGR 186 (204)
T ss_pred CcHHHHHHHH----HHHHcCCCCCCEEEEeCCccccHHHHHHHHHhCCCCEEEEecC
Confidence 4455444333 3334333468899999987 3333434445578998888764
No 194
>PF06032 DUF917: Protein of unknown function (DUF917); InterPro: IPR010318 This family consists of hypothetical bacterial and archaeal proteins of unknown function.; PDB: 2O3I_B.
Probab=21.98 E-value=1.6e+02 Score=26.95 Aligned_cols=32 Identities=6% Similarity=0.031 Sum_probs=21.8
Q ss_pred CCCccEEEecCCCCHH--HHHHHHHHcCCCEEEE
Q psy1963 65 KISARTVCGVPYTALP--IATAVSVKYNIPMLIR 96 (250)
Q Consensus 65 ~~~~d~Ivgv~~~Gi~--~a~~lA~~l~ip~~~~ 96 (250)
+.+++.|++++.||.+ .+..+|..+|+|++-.
T Consensus 89 g~~~~av~~~EiGG~N~~~pl~~Aa~~GlPvvDa 122 (353)
T PF06032_consen 89 GRKIDAVIPIEIGGSNGLNPLLAAAQLGLPVVDA 122 (353)
T ss_dssp T--EEEEE-SSSSCCHHHHHHHHHHHHT-EEESB
T ss_pred CCCccEEeehhcCccchhHHHHHHHHhCCCEEcC
Confidence 4569999999999987 3445666899998743
No 195
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=21.88 E-value=3.7e+02 Score=24.92 Aligned_cols=68 Identities=18% Similarity=0.080 Sum_probs=41.1
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEEEeCCccHHHHHHh--cCCcEEEeecHHHHHHHHHH
Q psy1963 136 EKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQGGRANLKQ--LGYTLHSLFTLSSVMDILYK 207 (250)
Q Consensus 136 ~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~~~~~~~l~~--~g~~v~sl~~~~~l~~~~~~ 207 (250)
..||+|+|+-| +......++.|.+.|.+++.+.+-....+.-.+.++. .+..+..=.++.++.+.+.+
T Consensus 272 l~Gkrv~i~gd----~~~~~~l~~~L~elGm~~v~~~t~~~~~~~~~~~~~~l~~~~~v~~~~d~~~l~~~i~~ 341 (407)
T TIGR01279 272 LRGKKIFFFGD----NLLELPLARFLKRCGMEVVECGTPYIHRRFHAAELALLEGGVRIVEQPDFHRQLQRIRA 341 (407)
T ss_pred cCCCEEEEECC----chHHHHHHHHHHHCCCEEEEecCCCCChHHHHHHHhhcCCCCeEEeCCCHHHHHHHHHh
Confidence 58999999766 5667788999999999997666433222111112221 23344443456666666555
No 196
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=21.78 E-value=1.6e+02 Score=20.47 Aligned_cols=53 Identities=15% Similarity=0.095 Sum_probs=34.0
Q ss_pred ccHHHHHHHHHHHhCCCeEEEEEEEEeCCccHHHHHHhcCCcEEEe--ecHHHHHHHH
Q psy1963 150 SGSSILETINDLKSVGIVVTDVLTIVDREQGGRANLKQLGYTLHSL--FTLSSVMDIL 205 (250)
Q Consensus 150 TG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~~~~~~~l~~~g~~v~sl--~~~~~l~~~~ 205 (250)
.|..-....+.|.+.|+.++ +.-.-+++....|++.|+.++.- -+++++++.+
T Consensus 38 ~~~~~~~~~~~l~~~~v~~l---i~~~iG~~~~~~L~~~gI~v~~~~~~~i~~~l~~~ 92 (94)
T PF02579_consen 38 GGGGGDKIAKFLAEEGVDVL---ICGGIGEGAFRALKEAGIKVYQGAGGDIEEALEAY 92 (94)
T ss_dssp SSCHSTHHHHHHHHTTESEE---EESCSCHHHHHHHHHTTSEEEESTSSBHHHHHHHH
T ss_pred ccccchhHHHHHHHcCCCEE---EEeCCCHHHHHHHHHCCCEEEEcCCCCHHHHHHHH
Confidence 34555566677777776543 33344667788899999999886 2355555544
No 197
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=21.59 E-value=4.2e+02 Score=21.09 Aligned_cols=35 Identities=11% Similarity=-0.068 Sum_probs=24.4
Q ss_pred CEEEEEecccccc---HHHHHHHHHHHhCCCeEEEEEE
Q psy1963 139 DKCVIIEDVVTSG---SSILETINDLKSVGIVVTDVLT 173 (250)
Q Consensus 139 k~VlIVDDvitTG---~Tl~~a~~~L~~~Ga~vv~~~v 173 (250)
+.|+|+=|.-+++ .....+++.+++.|..+..+.+
T Consensus 105 ~~villTDG~~~~~~~~~~~~~a~~l~~~gv~i~~vgv 142 (185)
T cd01474 105 SVIIALTDGQLLLNGHKYPEHEAKLSRKLGAIVYCVGV 142 (185)
T ss_pred eEEEEEcCCCcCCCCCcchHHHHHHHHHcCCEEEEEee
Confidence 5688888887742 3445567889999987666555
No 198
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=21.58 E-value=1.9e+02 Score=20.42 Aligned_cols=30 Identities=23% Similarity=0.206 Sum_probs=22.9
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHhCCCeE
Q psy1963 136 EKGDKCVIIEDVVTSGSSILETINDLKSVGIVV 168 (250)
Q Consensus 136 ~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~v 168 (250)
.+++.|+++.+ +|.....++..|++.|.+.
T Consensus 59 ~~~~~ivvyC~---~G~rs~~a~~~L~~~G~~~ 88 (101)
T cd01518 59 LKGKKVLMYCT---GGIRCEKASAYLKERGFKN 88 (101)
T ss_pred cCCCEEEEECC---CchhHHHHHHHHHHhCCcc
Confidence 46778888875 6777777788899999763
No 199
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=21.49 E-value=1e+02 Score=24.80 Aligned_cols=53 Identities=23% Similarity=0.294 Sum_probs=32.4
Q ss_pred CCCEEEEEeccccccHHHHHHHHHHHhCCC-eEEEEEEEEeCCccHHHHHHhcCCcEEEeec
Q psy1963 137 KGDKCVIIEDVVTSGSSILETINDLKSVGI-VVTDVLTIVDREQGGRANLKQLGYTLHSLFT 197 (250)
Q Consensus 137 ~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga-~vv~~~vlvd~~~~~~~~l~~~g~~v~sl~~ 197 (250)
-|=+|.|| ||+|+.. +.+++..+ .++++++.-|.. .|...+...|+|+..++.
T Consensus 85 ~g~~v~i~-----~Ggt~ar--~~ik~~~p~~iigVAC~~dL~-~g~~~~~~~~ip~~gV~l 138 (158)
T PF01976_consen 85 YGYKVYIA-----TGGTLAR--KIIKEYRPKAIIGVACERDLI-SGIQDLKPLGIPVQGVLL 138 (158)
T ss_pred cCCEEEEE-----cChHHHH--HHHHHhCCCEEEEEechHHHH-HHHHHHhhcCCCeeEEEe
Confidence 45566553 6666544 44444444 466666666665 455566778899988764
No 200
>PRK05953 precorrin-8X methylmutase; Validated
Probab=21.42 E-value=2.8e+02 Score=23.54 Aligned_cols=41 Identities=12% Similarity=0.084 Sum_probs=25.3
Q ss_pred HHHhhcCCCccEEEecCCC--CHHHHHHHHHHcCCCEEEEeec
Q psy1963 59 DYLNINKISARTVCGVPYT--ALPIATAVSVKYNIPMLIRRKD 99 (250)
Q Consensus 59 ~~i~~~~~~~d~Ivgv~~~--Gi~~a~~lA~~l~ip~~~~rk~ 99 (250)
+.+.+.+..+.+|+|+|.| |..=+...-...++|++..+-.
T Consensus 137 ~li~~g~~~PalVIG~PVGFV~AaESKe~L~~~~vP~It~~Gr 179 (208)
T PRK05953 137 ELVEAEEIRPALVIATPAGFIDADDAKERLQDSLVPHITIDGR 179 (208)
T ss_pred HHHHhcCCCCCEEEEeCCcccCcHHHHHHHHhCCCCEEEEeCC
Confidence 3444333568889999886 4333443334568888877754
No 201
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=21.32 E-value=1.5e+02 Score=25.82 Aligned_cols=41 Identities=12% Similarity=0.039 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhcCCCccEEEecCCC----CHHHHHHHHHHcCCCEE
Q psy1963 52 YLSTIINDYLNINKISARTVCGVPYT----ALPIATAVSVKYNIPML 94 (250)
Q Consensus 52 ~l~~~la~~i~~~~~~~d~Ivgv~~~----Gi~~a~~lA~~l~ip~~ 94 (250)
..+..|+..+++. .+|+|++-... .-..+..+|..||+|++
T Consensus 99 ~tA~~La~ai~~~--~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~v 143 (256)
T PRK03359 99 QTASALAAAAQKA--GFDLILCGDGSSDLYAQQVGLLVGEILNIPAI 143 (256)
T ss_pred HHHHHHHHHHHHh--CCCEEEEcCccccCCCCcHHHHHHHHhCCCce
Confidence 3566777777764 49988765542 23578899999999975
No 202
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=21.32 E-value=6.2e+02 Score=22.93 Aligned_cols=82 Identities=11% Similarity=0.054 Sum_probs=49.0
Q ss_pred EEEecCCCCHHHHHHHHHHc-CCCEEEEeeccCCcCccccccceeecCCcccccccccccceEe-ccccCCCEEEEEecc
Q psy1963 70 TVCGVPYTALPIATAVSVKY-NIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIE-GVYEKGDKCVIIEDV 147 (250)
Q Consensus 70 ~Ivgv~~~Gi~~a~~lA~~l-~ip~~~~rk~~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~-g~~~~Gk~VlIVDDv 147 (250)
.|++- .+.-.+|..+|..+ |+|+.-.....=..|+. + ..++ ..-..|+.|+||--.
T Consensus 18 ~i~~g-~~~~~LA~~ia~~l~g~~l~~~~~~~FpDGE~------~---------------v~v~~~~~vrg~~V~ivqs~ 75 (326)
T PLN02297 18 HLFYC-EETEELARKIAAESDAIELGSINWRKFPDGFP------N---------------LFINNAHGIRGQHVAFLASF 75 (326)
T ss_pred EEEEC-CCCHHHHHHHHHHhCCCceeeeEEEECCCCCE------E---------------EEEcCCCCcCCCeEEEECCC
Confidence 34443 45578999999996 89986554321112321 0 1222 122479999998765
Q ss_pred ccccHHHHH---HHHHHHhCCCeEEEEEEE
Q psy1963 148 VTSGSSILE---TINDLKSVGIVVTDVLTI 174 (250)
Q Consensus 148 itTG~Tl~~---a~~~L~~~Ga~vv~~~vl 174 (250)
... .-+.+ ++.+|+++|++.+.++..
T Consensus 76 ~~p-d~lmELLl~~dAlr~~ga~~i~~ViP 104 (326)
T PLN02297 76 SSP-AVIFEQLSVIYALPKLFVASFTLVLP 104 (326)
T ss_pred CCC-hHHHHHHHHHHHHHHcCCCEEEEEee
Confidence 433 33444 477788999987666554
No 203
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=21.31 E-value=2.1e+02 Score=25.40 Aligned_cols=60 Identities=17% Similarity=0.107 Sum_probs=36.4
Q ss_pred ccccHHHHHHHHHHHhCCCeEEEEEEEEeCCc---------cHHHHHHhcCCcEEEeecHH--HHHHHHHH
Q psy1963 148 VTSGSSILETINDLKSVGIVVTDVLTIVDREQ---------GGRANLKQLGYTLHSLFTLS--SVMDILYK 207 (250)
Q Consensus 148 itTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~~---------~~~~~l~~~g~~v~sl~~~~--~l~~~~~~ 207 (250)
+.|+.-...+.+.|.+.|.+++++++.-++.. .-.+..++.|+|++..-+++ ++.+.+.+
T Consensus 6 ~G~~~~a~~~L~~L~~~~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~~~~Ip~~~~~~~~~~~~~~~l~~ 76 (309)
T PRK00005 6 MGTPEFAVPSLKALLESGHEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIPVLQPEKLRDPEFLAELAA 76 (309)
T ss_pred ECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCCCCCCCCCCHHHHHHHHcCCCEECcCCCCCHHHHHHHHh
Confidence 35666677888888887877776665444321 11344457899987655443 34555544
No 204
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=21.26 E-value=1.3e+02 Score=25.07 Aligned_cols=81 Identities=10% Similarity=0.173 Sum_probs=42.6
Q ss_pred EEEEEeccccccHHHHHHHHH-HHhC-CCeEEEEEEEEeCCccHHHHHHhcCCcEEEeec--HHHHHHHHHHcCCCCHHH
Q psy1963 140 KCVIIEDVVTSGSSILETIND-LKSV-GIVVTDVLTIVDREQGGRANLKQLGYTLHSLFT--LSSVMDILYKANKIKVDT 215 (250)
Q Consensus 140 ~VlIVDDvitTG~Tl~~a~~~-L~~~-Ga~vv~~~vlvd~~~~~~~~l~~~g~~v~sl~~--~~~l~~~~~~~~~i~~~~ 215 (250)
-+..+++...+|+...++..- +-.. ++.+-.+.++... ....+.|++.|+++..+-. +++..+. +..+++++
T Consensus 64 via~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~-~~~~~~l~k~Gv~~~~~~~g~~K~~~~~---~~~~s~~~ 139 (207)
T TIGR00706 64 VVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQG-ANVEKLYEKLGIEFEVIKSGEYKDIGSP---TRELTPEE 139 (207)
T ss_pred EEEEECCccchHHHHHHhcCCEEEECCCCeEEeeeEEEec-CCHHHHHHhCCceEEEEEcCCCcCCCCC---CCCCCHHH
Confidence 356678888777776665332 2111 2232233334333 3456677888988776642 2222222 23466666
Q ss_pred HHHHHHHHH
Q psy1963 216 VEDVKKYLC 224 (250)
Q Consensus 216 ~~~v~~~l~ 224 (250)
.+.+.+++.
T Consensus 140 ~e~~~~~l~ 148 (207)
T TIGR00706 140 RDILQNLVN 148 (207)
T ss_pred HHHHHHHHH
Confidence 666655554
No 205
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=21.19 E-value=2.8e+02 Score=24.75 Aligned_cols=60 Identities=12% Similarity=0.126 Sum_probs=38.1
Q ss_pred ccccHHHHHHHHHHHhCCCeEEEEEEEEeCCc---------cHHHHHHhcCCcEEEeecHH--HHHHHHHH
Q psy1963 148 VTSGSSILETINDLKSVGIVVTDVLTIVDREQ---------GGRANLKQLGYTLHSLFTLS--SVMDILYK 207 (250)
Q Consensus 148 itTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~~---------~~~~~l~~~g~~v~sl~~~~--~l~~~~~~ 207 (250)
+.|+.....+.+.|.+.|.+++++++--|+.. .-.+...+.|++++..-+.+ ++++.+.+
T Consensus 6 ~Gs~~~a~~~L~~L~~~~~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~~~Ipv~~~~~~~~~~~~~~l~~ 76 (313)
T TIGR00460 6 FGTPTFSLPVLEELREDNFEVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIPVFQPEKQRQLEELPLVRE 76 (313)
T ss_pred ECCCHHHHHHHHHHHhCCCcEEEEEcCCCCccCCCCCCCCChHHHHHHHcCCCEEecCCCCcHHHHHHHHh
Confidence 46677778888988888877776665544321 12333356899998766654 45555544
No 206
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=21.08 E-value=2.1e+02 Score=23.24 Aligned_cols=80 Identities=20% Similarity=0.179 Sum_probs=44.3
Q ss_pred CEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEEEeCCc--------cHHHHHHhcCCcEEEeec-HHHHHHHHH-Hc
Q psy1963 139 DKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQ--------GGRANLKQLGYTLHSLFT-LSSVMDILY-KA 208 (250)
Q Consensus 139 k~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~~--------~~~~~l~~~g~~v~sl~~-~~~l~~~~~-~~ 208 (250)
+++++- -+||.|...+.++++.. .+++.+.--....+ ..++.|++.|..++.--+ ++.+-..+. ++
T Consensus 29 k~~vVA---S~tG~tA~k~lemveg~-lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~~sHalSg~eRsis~kf 104 (186)
T COG1751 29 KHIVVA---SSTGYTALKALEMVEGD-LKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLTQSHALSGVERSISRKF 104 (186)
T ss_pred ceEEEE---ecccHHHHHHHHhcccC-ceEEEEEeecccccCCceecCHHHHHHHHHcCceeeeehhhhhcchhhhhhhc
Confidence 455543 47999999999988765 44443332222211 236778888988776554 333433332 24
Q ss_pred CCCCHHHHHHHHHHHH
Q psy1963 209 NKIKVDTVEDVKKYLC 224 (250)
Q Consensus 209 ~~i~~~~~~~v~~~l~ 224 (250)
|-+++ .+-|.+-|+
T Consensus 105 GG~~p--~eiiAetLR 118 (186)
T COG1751 105 GGYSP--LEIIAETLR 118 (186)
T ss_pred CCcch--HHHHHHHHH
Confidence 55553 334444444
No 207
>PRK05954 precorrin-8X methylmutase; Provisional
Probab=20.94 E-value=3e+02 Score=23.26 Aligned_cols=41 Identities=15% Similarity=0.277 Sum_probs=25.7
Q ss_pred HHHhhcCCCccEEEecCCC--CHHHHHHHHHHcCCCEEEEeec
Q psy1963 59 DYLNINKISARTVCGVPYT--ALPIATAVSVKYNIPMLIRRKD 99 (250)
Q Consensus 59 ~~i~~~~~~~d~Ivgv~~~--Gi~~a~~lA~~l~ip~~~~rk~ 99 (250)
+.+.+....+..|+|+|.| |..=+...-...++|++..+-.
T Consensus 139 eli~~g~~~PalVIg~PVGFV~A~ESKe~L~~~~iP~It~~Gr 181 (203)
T PRK05954 139 QQIRAGRVKPSLVIGVPVGFVSVVEAKQALAQLDVPQIRVEGR 181 (203)
T ss_pred HHHHcCCCCCCEEEEECCcccCHHHHHHHHHhCCCCEEEEecC
Confidence 3334333568899999987 3333333335578999888764
No 208
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=20.58 E-value=5.2e+02 Score=21.74 Aligned_cols=66 Identities=20% Similarity=0.115 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEEEEEeC--C-c----cHHHHHHhcCCcEEEeecHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q psy1963 152 SSILETINDLKSVGIVVTDVLTIVDR--E-Q----GGRANLKQLGYTLHSLFTLSSVMDILYKANKIKVDTVEDVKKYLC 224 (250)
Q Consensus 152 ~Tl~~a~~~L~~~Ga~vv~~~vlvd~--~-~----~~~~~l~~~g~~v~sl~~~~~l~~~~~~~~~i~~~~~~~v~~~l~ 224 (250)
..+..+++.+++.|..+...+.-+.+ . . .-.+.+.+.|...+.+.+. .|.+++++...+..++.
T Consensus 115 ~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt---------~G~~~P~~v~~li~~l~ 185 (265)
T cd03174 115 ENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDT---------VGLATPEEVAELVKALR 185 (265)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechh---------cCCcCHHHHHHHHHHHH
Confidence 34667788888899887666644444 2 1 1234456789888887765 57788888777777766
Q ss_pred hc
Q psy1963 225 NN 226 (250)
Q Consensus 225 ~~ 226 (250)
+.
T Consensus 186 ~~ 187 (265)
T cd03174 186 EA 187 (265)
T ss_pred Hh
Confidence 54
No 209
>PRK12342 hypothetical protein; Provisional
Probab=20.31 E-value=1.8e+02 Score=25.35 Aligned_cols=40 Identities=5% Similarity=-0.009 Sum_probs=29.0
Q ss_pred HHHHHHHHHhhcCCCccEEEecCCC----CHHHHHHHHHHcCCCEE
Q psy1963 53 LSTIINDYLNINKISARTVCGVPYT----ALPIATAVSVKYNIPML 94 (250)
Q Consensus 53 l~~~la~~i~~~~~~~d~Ivgv~~~----Gi~~a~~lA~~l~ip~~ 94 (250)
.+..|+..+++. .+|+|++-... .-..+..+|..||+|++
T Consensus 97 ta~~La~~i~~~--~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~v 140 (254)
T PRK12342 97 TAKALAAAIEKI--GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVI 140 (254)
T ss_pred HHHHHHHHHHHh--CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcE
Confidence 466677777764 38988765543 22578899999999975
No 210
>PLN02494 adenosylhomocysteinase
Probab=20.20 E-value=1.4e+02 Score=28.60 Aligned_cols=59 Identities=14% Similarity=0.044 Sum_probs=38.3
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEE-EEeCCccHHHHHHhcCCcEEEeec
Q psy1963 136 EKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLT-IVDREQGGRANLKQLGYTLHSLFT 197 (250)
Q Consensus 136 ~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~v-lvd~~~~~~~~l~~~g~~v~sl~~ 197 (250)
++|.+|-..== -|-.| ...++.|++.||+|..+.+ +..-.......|.+.|++|+++-.
T Consensus 44 l~G~~i~~~lH--l~~kT-a~L~~tL~~~GA~v~~~~~Np~sTqd~vaaal~~~gi~vfa~~g 103 (477)
T PLN02494 44 FKGARITGSLH--MTIQT-AVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSAAVFAWKG 103 (477)
T ss_pred CCCCEEEEEEe--chHHH-HHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHhCCceEEEecC
Confidence 46766544321 12223 2346788999999987776 333344667778888999999864
No 211
>KOG1615|consensus
Probab=20.16 E-value=1.2e+02 Score=25.65 Aligned_cols=35 Identities=11% Similarity=0.102 Sum_probs=25.7
Q ss_pred HHHHHHHhhcCCCccEEEecCCCCH-HHHHHHHHHcCCCE
Q psy1963 55 TIINDYLNINKISARTVCGVPYTAL-PIATAVSVKYNIPM 93 (250)
Q Consensus 55 ~~la~~i~~~~~~~d~Ivgv~~~Gi-~~a~~lA~~l~ip~ 93 (250)
+.|.+++++.+ . =+.+-+||| +++..+|..||+|+
T Consensus 94 ~eLv~~L~~~~--~--~v~liSGGF~~~i~~Va~~Lgi~~ 129 (227)
T KOG1615|consen 94 RELVSRLHARG--T--QVYLISGGFRQLIEPVAEQLGIPK 129 (227)
T ss_pred HHHHHHHHHcC--C--eEEEEcCChHHHHHHHHHHhCCcH
Confidence 45677777765 2 234457887 58999999999998
No 212
>KOG0743|consensus
Probab=20.15 E-value=3.8e+02 Score=25.54 Aligned_cols=54 Identities=15% Similarity=0.200 Sum_probs=37.8
Q ss_pred ccccCCHHHHHHHHHHHHHHHhhc------CC---CccEEEecCCCCH-HHHHHHHHHcCCCEE
Q psy1963 41 RGIISYPKLMDYLSTIINDYLNIN------KI---SARTVCGVPYTAL-PIATAVSVKYNIPML 94 (250)
Q Consensus 41 ~~~~~~p~~~~~l~~~la~~i~~~------~~---~~d~Ivgv~~~Gi-~~a~~lA~~l~ip~~ 94 (250)
..+..+|++-+.+.+.|.+.+... |. .-=++.|+|-.|= .+-+++|..|+-.+.
T Consensus 201 ~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIy 264 (457)
T KOG0743|consen 201 ETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIY 264 (457)
T ss_pred cccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceE
Confidence 346678999999988887776542 11 1125778887774 577899999887654
No 213
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=20.05 E-value=5.7e+02 Score=22.51 Aligned_cols=49 Identities=12% Similarity=0.173 Sum_probs=32.0
Q ss_pred cCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEEEeCCccHHHHHHhcCCc
Q psy1963 136 EKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQGGRANLKQLGYT 191 (250)
Q Consensus 136 ~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~~~~~~~l~~~g~~ 191 (250)
.+|++|+|. -.|..=..++++++..|++.+ +++++.+.-.+.+++.|..
T Consensus 168 ~~g~~VlV~----G~G~vG~~aiqlak~~G~~~V---i~~~~~~~~~~~a~~lGa~ 216 (343)
T PRK09880 168 LQGKRVFVS----GVGPIGCLIVAAVKTLGAAEI---VCADVSPRSLSLAREMGAD 216 (343)
T ss_pred CCCCEEEEE----CCCHHHHHHHHHHHHcCCcEE---EEEeCCHHHHHHHHHcCCc
Confidence 468888885 247777788999999998533 2334543344455566654
No 214
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.04 E-value=43 Score=20.80 Aligned_cols=10 Identities=50% Similarity=0.783 Sum_probs=7.6
Q ss_pred cccccccCCC
Q psy1963 239 RITRCLRPFT 248 (250)
Q Consensus 239 ~~~~~~~~~~ 248 (250)
.=..|+|||+
T Consensus 10 ~C~~C~rpf~ 19 (42)
T PF10013_consen 10 ICPVCGRPFT 19 (42)
T ss_pred cCcccCCcch
Confidence 4457999996
No 215
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=20.04 E-value=3.7e+02 Score=23.69 Aligned_cols=49 Identities=20% Similarity=0.141 Sum_probs=31.2
Q ss_pred ccCCCEEEEEeccccccHHHHHHHHHHHhCCCeEEEEEEEEeCCccHHHHHHhcCCc
Q psy1963 135 YEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQGGRANLKQLGYT 191 (250)
Q Consensus 135 ~~~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~vv~~~vlvd~~~~~~~~l~~~g~~ 191 (250)
+.+|++|+|.- .|..-..++++++..|++++. +++.+...+.+++.|..
T Consensus 163 ~~~g~~VlV~G----~g~iG~~a~~~a~~~G~~vi~----~~~~~~~~~~a~~~Ga~ 211 (329)
T TIGR02822 163 LPPGGRLGLYG----FGGSAHLTAQVALAQGATVHV----MTRGAAARRLALALGAA 211 (329)
T ss_pred CCCCCEEEEEc----CCHHHHHHHHHHHHCCCeEEE----EeCChHHHHHHHHhCCc
Confidence 45799998873 266667788899999986432 24443334445556653
No 216
>PRK08285 cobH precorrin-8X methylmutase; Reviewed
Probab=20.02 E-value=3.2e+02 Score=23.17 Aligned_cols=41 Identities=17% Similarity=0.270 Sum_probs=25.1
Q ss_pred HHHhhcCCCccEEEecCCC--CHHHHHHHHHH--cCCCEEEEeec
Q psy1963 59 DYLNINKISARTVCGVPYT--ALPIATAVSVK--YNIPMLIRRKD 99 (250)
Q Consensus 59 ~~i~~~~~~~d~Ivgv~~~--Gi~~a~~lA~~--l~ip~~~~rk~ 99 (250)
+.+.+....+.+|+|+|.| |..=+...-.. .++|++.++-.
T Consensus 145 ~li~~g~~~PalVIG~PVGFV~a~ESKe~L~~~~~~vP~I~~~Gr 189 (208)
T PRK08285 145 EMLDAGAPRPAAILGFPVGFVGAAESKDALAADSRGVPYLIVRGR 189 (208)
T ss_pred HHHHcCCCCCCEEEEeCCccccHHHHHHHHHhccCCCCEEEEecC
Confidence 3344333568899999987 33333333334 38999888764
Done!