RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1963
(250 letters)
>gnl|CDD|184340 PRK13809, PRK13809, orotate phosphoribosyltransferase; Provisional.
Length = 206
Score = 177 bits (451), Expect = 5e-56
Identities = 73/227 (32%), Positives = 122/227 (53%), Gaps = 23/227 (10%)
Query: 1 MSVSQEKLN-HLCLQLFDIDALKFGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIIND 59
M+ KL L+ I A+KFG F+ G +TP+Y+D+R +IS P+++ ++T+I
Sbjct: 2 MNYEDAKLRDQAVAILYQIGAIKFGKFILASGEETPIYVDMRLVISSPEVLQTIATLI-- 59
Query: 60 YLNINKISARTVCGVPYTALPIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKR 119
+ ++ +CGVPYTAL +AT++S+KYNIPM++RRK++K I+
Sbjct: 60 WRLRPSFNSSLLCGVPYTALTLATSISLKYNIPMVLRRKELKNVDPSDAIK--------- 110
Query: 120 KDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQ 179
+EG++ G C++I D+V+SG SI+ET L+ G+VV + L +DR++
Sbjct: 111 -----------VEGLFTPGQTCLVINDMVSSGKSIIETAVALEEEGLVVREALVFLDRQK 159
Query: 180 GGRANLKQLGYTLHSLFTLSSVMDILYKANKIKVDTVEDVKKYLCNN 226
G L G L S+FT+ ++ L K+ + K +
Sbjct: 160 GACQPLGPQGIKLSSVFTVPDLIKSLISYGKLSSGDLTLANKIIKIL 206
>gnl|CDD|223537 COG0461, PyrE, Orotate phosphoribosyltransferase [Nucleotide
transport and metabolism].
Length = 201
Score = 166 bits (422), Expect = 1e-51
Identities = 71/217 (32%), Positives = 105/217 (48%), Gaps = 33/217 (15%)
Query: 13 LQLFDIDALKFGDFVTKVGIKTPVYLDLRGIISYPKL----MDYLSTIINDYLNINKISA 68
L + ALKFG+F G K+P Y+DLR ++ P+L L+ II + L
Sbjct: 8 ELLLEKGALKFGEFTLSSGRKSPYYVDLRLFLTGPELLQLIAFALAEIIKEALEF----- 62
Query: 69 RTVCGVPYTALPIATAVSVKYNI--PMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYG 126
V G +P+A A ++ PM RK+ K +GT LIEG KG+K
Sbjct: 63 DVVAGPALGGIPLAAATALALAHLPPMAYVRKEAKDHGTGGLIEGGEVKGEK-------- 114
Query: 127 TKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQGGRANLK 186
V++EDV+T+G SILE + L+ G V V IVDR+ G + LK
Sbjct: 115 --------------VVVVEDVITTGGSILEAVEALREAGAEVVGVAVIVDRQSGAKEVLK 160
Query: 187 QLGYTLHSLFTLSSVMDILYKANKIKVDTVEDVKKYL 223
+ G L SL TLS ++++LY+A I ++ + +
Sbjct: 161 EYGVKLVSLVTLSDLLEVLYEAGDIPLEELAIPAEAY 197
>gnl|CDD|234771 PRK00455, pyrE, orotate phosphoribosyltransferase; Validated.
Length = 202
Score = 147 bits (375), Expect = 2e-44
Identities = 58/214 (27%), Positives = 94/214 (43%), Gaps = 33/214 (15%)
Query: 15 LFDIDALKFGDFVTKVGIKTPVYLDLRGIISYP----KLMD-YLSTIINDYLNINKISAR 69
L +I AL FG F G K+P Y D R ++SYP L I + + +
Sbjct: 12 LLEIGALLFGHFTLSSGRKSPYYFDCRKLLSYPEALALLGRFLAEAIKDSGIEFD----- 66
Query: 70 TVCGVPYTALPIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKK 129
V G +P+A AV+ ++P + RK+ K +G IEG +R
Sbjct: 67 VVAGPATGGIPLAAAVARALDLPAIFVRKEAKDHGEGGQIEG------RRL--------- 111
Query: 130 LIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQGGRANLKQLG 189
G + +++EDV+T+G S+LE + +++ G V V IVDR+ + G
Sbjct: 112 -------FGKRVLVVEDVITTGGSVLEAVEAIRAAGAEVVGVAVIVDRQSAAQEVFADAG 164
Query: 190 YTLHSLFTLSSVMDILYKANKIKVDTVEDVKKYL 223
L SL TL +++ + + + + VK Y
Sbjct: 165 VPLISLITLDDLLEYA-EEGPLCKEGLPAVKAYR 197
>gnl|CDD|180119 PRK05500, PRK05500, bifunctional orotidine 5'-phosphate
decarboxylase/orotate phosphoribosyltransferase protein;
Validated.
Length = 477
Score = 151 bits (383), Expect = 5e-43
Identities = 69/210 (32%), Positives = 116/210 (55%), Gaps = 26/210 (12%)
Query: 3 VSQEKLNHLCLQLFDIDALKFGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLN 62
++Q L LQL+DI L FG++V G Y+DLR IIS P+L +++ Y
Sbjct: 282 LNQHPHQDLILQLYDIGCLLFGEYVQASGATFSYYIDLRKIISNPQL---FHQVLSAYAE 338
Query: 63 INK-ISARTVCGVPYTALPIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKD 121
I K ++ + G+PY +LP AT +++ + PM+ RK+
Sbjct: 339 ILKNLTFDRIAGIPYGSLPTATGLALHLHHPMIF----------------------PRKE 376
Query: 122 VKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQGG 181
VK +GT++LIEG + G+ V+++D++ +G S++E LKS G+ V D++ +D EQG
Sbjct: 377 VKAHGTRRLIEGNFHPGETVVVVDDILITGKSVMEGAEKLKSAGLNVRDIVVFIDHEQGV 436
Query: 182 RANLKQLGYTLHSLFTLSSVMDILYKANKI 211
+ L+ GY +S+ T+S + + LY+A +I
Sbjct: 437 KDKLQSHGYQAYSVLTISEITETLYQAGRI 466
>gnl|CDD|129436 TIGR00336, pyrE, orotate phosphoribosyltransferase. Orotate
phosphoribosyltransferase (OPRTase) is involved in the
biosynthesis of pyrimidine nucleotides.
Alpha-D-ribosyldiphosphate 5-phosphate (PRPP) and
orotate are utilized to form pyrophosphate and orotidine
5'-monophosphate (OMP) in the presence of divalent
cations, preferably Mg2+. In a number of eukaryotes,
this protein is fused to a domain that catalyses the
reaction (EC 4.1.1.23). The combined activity of EC
2.4.2.10 and EC 4.1.1.23 is termed uridine
5'-monophosphate synthase. The conserved Lys (K) residue
at position 101 of the seed alignment has been proposed
as the active site for the enzyme [Purines, pyrimidines,
nucleosides, and nucleotides, Pyrimidine ribonucleotide
biosynthesis].
Length = 173
Score = 109 bits (274), Expect = 9e-30
Identities = 63/198 (31%), Positives = 101/198 (51%), Gaps = 38/198 (19%)
Query: 15 LFDIDALKFGDFVTKVGIKTPVYLDLRGIISYPKLMD----YLSTIINDYLNINKISART 70
L ++ ALKFG+F G K+P Y +++ + P+L + Y + II +L + I+
Sbjct: 3 LLEVQALKFGEFTLSSGRKSPYYFNIKLFNTGPELANLIARYAAAIIKSHLEFDVIA--- 59
Query: 71 VCGVPYTALPIATAVSVK-----YNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTY 125
G +PIATAVSVK +IP+ RK+ K +G IEG ++
Sbjct: 60 --GPALGGIPIATAVSVKLAKPGGDIPLCFNRKEAKDHGEGGNIEG---------ELL-- 106
Query: 126 GTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQ--GGRA 183
+GDK V++EDV+T+G+SILE + +++ G V V+ VDR++ G+
Sbjct: 107 -----------EGDKVVVVEDVITTGTSILEAVEIIQAAGGQVAGVIIAVDRQERSAGQE 155
Query: 184 NLKQLGYTLHSLFTLSSV 201
K+ G + SL TL +
Sbjct: 156 FEKEYGLPVISLITLKDL 173
>gnl|CDD|237518 PRK13811, PRK13811, orotate phosphoribosyltransferase; Provisional.
Length = 170
Score = 99 bits (249), Expect = 4e-26
Identities = 63/189 (33%), Positives = 94/189 (49%), Gaps = 28/189 (14%)
Query: 15 LFDIDALKFGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNINKISARTVCGV 74
L A++FGDF G K+ Y+D++ I++P L+ ++ + + V GV
Sbjct: 9 LISYKAIEFGDFTLASGAKSRYYIDIKTAITHPALLKEIAAEVAK-----RYDFDVVAGV 63
Query: 75 PYTALPIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGV 134
+P+A AVS+ P I RK+ K +G LI G DVK
Sbjct: 64 AVGGVPLAVAVSLAAGKPYAIIRKEAKDHGKAGLIIG---------DVK----------- 103
Query: 135 YEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQGGRANLKQLGYTLHS 194
G + +++EDV TSG S L I L++ G VV DV+T+VDREQG L +LG TL
Sbjct: 104 ---GKRVLLVEDVTTSGGSALYGIEQLRAAGAVVDDVVTVVDREQGAEELLAELGITLTP 160
Query: 195 LFTLSSVMD 203
L +S +++
Sbjct: 161 LVRVSELLN 169
>gnl|CDD|184341 PRK13810, PRK13810, orotate phosphoribosyltransferase; Provisional.
Length = 187
Score = 99 bits (249), Expect = 5e-26
Identities = 61/202 (30%), Positives = 100/202 (49%), Gaps = 25/202 (12%)
Query: 1 MSVSQEKLNHLCLQLFDIDALKFGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDY 60
++ +K L L A+++GDF G K+ Y+D++ + PK + ++
Sbjct: 10 NNIENQK-QELIAALKACGAVRYGDFTLSSGKKSKYYIDIKKASTDPKTLKLIAR--QAA 66
Query: 61 LNINKISARTVCGVPYTALPIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRK 120
L I ++ TV GV +P+ATAVS++ +P+LI RK VK YGT
Sbjct: 67 LRIKEMDVDTVAGVELGGVPLATAVSLETGLPLLIVRKSVKDYGTGS------------- 113
Query: 121 DVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQG 180
+ + G + D+ V++EDV TSG S+ E I ++ G + V+T+VDRE+G
Sbjct: 114 --------RFV-GDLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYIKYVITVVDREEG 164
Query: 181 GRANLKQLGYTLHSLFTLSSVM 202
NLK+ L L + S ++
Sbjct: 165 AEENLKEADVELVPLVSASDLL 186
>gnl|CDD|237519 PRK13812, PRK13812, orotate phosphoribosyltransferase; Provisional.
Length = 176
Score = 98.7 bits (246), Expect = 1e-25
Identities = 53/189 (28%), Positives = 87/189 (46%), Gaps = 26/189 (13%)
Query: 15 LFDIDALKFGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNINKISARTVCGV 74
L D DA++FG+F G + Y+D + P + ++ D ++ + GV
Sbjct: 10 LRDADAVQFGEFELSHGGTSEYYVDKYLFETDPDCLRLIAEAFADRID----EDTKLAGV 65
Query: 75 PYTALPIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGV 134
A+P+ SV+ +P +I RK K YGT IEG
Sbjct: 66 ALGAVPLVAVTSVETGVPYVI----------------------ARKQAKEYGTGNRIEGR 103
Query: 135 YEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQGGRANLKQLGYTLHS 194
++G++ V++ED+ T+G S ++ + L+ G V VL +VDRE+G R NL L +
Sbjct: 104 LDEGEEVVVLEDIATTGQSAVDAVEALREAGATVNRVLVVVDREEGARENLADHDVELEA 163
Query: 195 LFTLSSVMD 203
L T S ++
Sbjct: 164 LVTASDLLA 172
>gnl|CDD|206754 cd06223, PRTases_typeI, Phosphoribosyl transferase (PRT)-type I
domain. Phosphoribosyl transferase (PRT) domain. The
type I PRTases are identified by a conserved PRPP
binding motif which features two adjacent acidic
residues surrounded by one or more hydrophobic residue.
PRTases catalyze the displacement of the
alpha-1'-pyrophosphate of
5-phosphoribosyl-alpha1-pyrpphosphate (PRPP) by a
nitrogen-containing nucleophile. The reaction products
are an alpha-1 substituted ribose-5'-phosphate and a
free pyrophosphate (PP). PRPP, an activated form of
ribose-5-phosphate, is a key metabolite connecting
nucleotide synthesis and salvage pathways. The type I
PRTase family includes a range of diverse phosphoribosyl
transferase enzymes and regulatory proteins of the
nucleotide synthesis and salvage pathways, including
adenine phosphoribosyltransferase EC:2.4.2.7.,
hypoxanthine-guanine-xanthine phosphoribosyltransferase,
hypoxanthine phosphoribosyltransferase EC:2.4.2.8.,
ribose-phosphate pyrophosphokinase EC:2.7.6.1.,
amidophosphoribosyltransferase EC:2.4.2.14., orotate
phosphoribosyltransferase EC:2.4.2.10., uracil
phosphoribosyltransferase EC:2.4.2.9., and
xanthine-guanine phosphoribosyltransferase EC:2.4.2.22.
Length = 130
Score = 71.3 bits (175), Expect = 8e-16
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 15/127 (11%)
Query: 71 VCGVPYTALPIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKL 130
V G+ LP+A A++ +P+ RK+ K G +L
Sbjct: 19 VVGILRGGLPLAAALARALGLPLAFIRKERKGPGRTPSE---------------PYGLEL 63
Query: 131 IEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQGGRANLKQLGY 190
G KG + ++++DV+ +G ++L I LK G V V ++D+ +GG L G
Sbjct: 64 PLGGDVKGKRVLLVDDVIATGGTLLAAIELLKEAGAKVVGVAVLLDKPEGGARELASPGD 123
Query: 191 TLHSLFT 197
++SLFT
Sbjct: 124 PVYSLFT 130
>gnl|CDD|215757 pfam00156, Pribosyltran, Phosphoribosyl transferase domain. This
family includes a range of diverse phosphoribosyl
transferase enzymes. This family includes: Adenine
phosphoribosyltransferase EC:2.4.2.7.
Hypoxanthine-guanine-xanthine phosphoribosyltransferase.
Hypoxanthine phosphoribosyltransferase EC:2.4.2.8.
Ribose-phosphate pyrophosphokinase i EC:2.7.6.1.
Amidophosphoribosyltransferase EC:2.4.2.14. Orotate
phosphoribosyltransferase EC:2.4.2.10. Uracil
phosphoribosyltransferase EC:2.4.2.9. Xanthine-guanine
phosphoribosyltransferase EC:2.4.2.22. In Arabidopsis,
At the very N-terminus of this domain is the P-Loop
NTPase domain.
Length = 123
Score = 62.4 bits (152), Expect = 2e-12
Identities = 26/135 (19%), Positives = 55/135 (40%), Gaps = 12/135 (8%)
Query: 41 RGIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSVKYNIPMLIRRKDV 100
++ P+ + L + + + I + G+ +P+ATA++ + IP+++ RK
Sbjct: 1 SNLLLDPEELRELIEALAEKIREEGIDPDVIVGIARGGIPLATALARELGIPLVLVRKSR 60
Query: 101 KTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETIND 160
K + V + KG + +I++DV+ +G ++ +
Sbjct: 61 SYP--------SSIKSRGGESVTLLSRLPELL----KGKRVLIVDDVLDTGGTLRAAVEL 108
Query: 161 LKSVGIVVTDVLTIV 175
LK G V V +V
Sbjct: 109 LKKAGAKVVGVAVLV 123
>gnl|CDD|223577 COG0503, Apt, Adenine/guanine phosphoribosyltransferases and
related PRPP-binding proteins [Nucleotide transport and
metabolism].
Length = 179
Score = 63.1 bits (154), Expect = 3e-12
Identities = 39/157 (24%), Positives = 67/157 (42%), Gaps = 25/157 (15%)
Query: 45 SYPKLMDYLSTIINDYLNINKI---SARTVCGVPYTALPIATAVSVKYNIPMLIRRKDVK 101
KL+D L+ D I+KI AR +P+A AV+++ +P + RK K
Sbjct: 37 LLAKLIDELAERYKDD-GIDKIVTIEAR--------GIPLAAAVALELGVPFVPVRKKGK 87
Query: 102 TYGTKKLIEGVYEKGDKRKDVKTYGTKKL--IEGVYEKGDKCVIIEDVVTSGSSILETIN 159
V YG++ L + + GD+ +I++D++ +G + L I
Sbjct: 88 LPEE----SVVET------YYLEYGSETLELHKDALKPGDRVLIVDDLLATGGTALALIE 137
Query: 160 DLKSVGIVVTDVLTIVDR-EQGGRANLKQLGYTLHSL 195
L+ G V +++ E GR L+ G + SL
Sbjct: 138 LLEQAGAEVVGAAFVIELGELDGRKKLEDDGLPVFSL 174
>gnl|CDD|235023 PRK02277, PRK02277, orotate phosphoribosyltransferase-like protein;
Provisional.
Length = 200
Score = 61.8 bits (151), Expect = 9e-12
Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 32/172 (18%)
Query: 36 VYLDLRGIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSVKYNIPMLI 95
+++D I S + Y+++ + D L V G+ + +P+AT V+ +
Sbjct: 54 IHIDWSSIGSSSSRLRYIASAMADMLEKEDEEVDVVVGIAKSGVPLATLVADELG----- 108
Query: 96 RRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYE------KGDKCVIIEDVVT 149
KD+ Y KK G EK G + +G +CVI++DV+T
Sbjct: 109 --KDLAIYHPKKWDHGEGEK---------------KTGSFSRNFASVEGKRCVIVDDVIT 151
Query: 150 SGSSILETINDLKSVGIVVTDVLTIVDREQGGRANLKQLGYTLHSLFTLSSV 201
SG+++ ETI LK G V+ ++D+ + G ++SL + V
Sbjct: 152 SGTTMKETIEYLKEHGGKPVAVVVLIDKSGIDEID----GVPVYSLIRVVRV 199
>gnl|CDD|233377 TIGR01367, pyrE_Therm, orotate phosphoribosyltransferase, Thermus
family. This model represents a distinct clade of
orotate phosphoribosyltransferases. Members include the
experimentally determined example from Thermus aquaticus
and additional examples from Caulobacter crescentus,
Helicobacter pylori, Mesorhizobium loti, and related
species [Purines, pyrimidines, nucleosides, and
nucleotides, Pyrimidine ribonucleotide biosynthesis].
Length = 187
Score = 56.3 bits (136), Expect = 8e-10
Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 36/191 (18%)
Query: 13 LQLF-DIDALKFGDFVTKVGIKTPVYLDLRGIISYPK----LMDYLSTIINDYLNINKIS 67
L ++ AL G F+ G +P +L ++ +P+ L L+ I DY +
Sbjct: 3 LDIYKQAGALHEGHFLLSSGKHSPYFLQSATLLEHPEALMELGGELAQKILDY----GLK 58
Query: 68 ARTVCGVPYTALPIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGT 127
+ G + + V+ + ++ + ++ G KL G K
Sbjct: 59 VDFIVGPAMGGVILGYEVARQLSVRSIFAERE---GGGMKLRRGFAVK------------ 103
Query: 128 KKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQGGRANLKQ 187
G+K V +EDVVT+G S+LE I ++ G V + I+DR QGG+ +
Sbjct: 104 ---------PGEKFVAVEDVVTTGGSLLEAIRAIEGQGGQVVGLACIIDRSQGGKPD--- 151
Query: 188 LGYTLHSLFTL 198
G L SL L
Sbjct: 152 SGVPLMSLKEL 162
>gnl|CDD|223925 COG0856, COG0856, Orotate phosphoribosyltransferase homologs
[Nucleotide transport and metabolism].
Length = 203
Score = 50.9 bits (122), Expect = 8e-08
Identities = 39/159 (24%), Positives = 65/159 (40%), Gaps = 31/159 (19%)
Query: 28 TKVGIKTP--VYLDLRGIISYPKLMDYLSTIINDY-LNINKISARTVCGVPYTALPIATA 84
K + P + +D R I + Y+S + D + V G+ + +P+AT
Sbjct: 44 KKESVPAPVDIKIDWRSIGKSGSRLRYISEAMADMIMEKVSFEVDVVVGIAISGVPLATM 103
Query: 85 VSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYE------KG 138
V+ + K++ Y +K RKD G +G
Sbjct: 104 VAYELG-------KELAIYHPRK----------HRKDE-----GAGKGGSISSNFASVEG 141
Query: 139 DKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDR 177
+CVI++DV+T+GS+I ETI LK G V+ + D+
Sbjct: 142 KRCVIVDDVITTGSTIKETIEQLKEEGGKPVLVVVLADK 180
>gnl|CDD|235028 PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional.
Length = 175
Score = 48.5 bits (117), Expect = 3e-07
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 25/124 (20%)
Query: 80 PIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGV----YEKGDKRKDVKTYGTKKL---IE 132
A++ K I + RK KL YE YGT L +
Sbjct: 64 IFGAALAYKLGIGFVPVRKP------GKLPRETISESYELE--------YGTDTLEIHKD 109
Query: 133 GVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDR-EQGGRANLKQLGYT 191
+ + GD+ +I++D++ +G ++ I L+ +G V +++ + GGR L+ GY
Sbjct: 110 AI-KPGDRVLIVDDLLATGGTLEAAIKLLERLGAEVVGAAFVIELPDLGGREKLE--GYP 166
Query: 192 LHSL 195
+ SL
Sbjct: 167 VKSL 170
>gnl|CDD|183595 PRK12560, PRK12560, adenine phosphoribosyltransferase; Provisional.
Length = 187
Score = 47.5 bits (113), Expect = 9e-07
Identities = 41/169 (24%), Positives = 80/169 (47%), Gaps = 19/169 (11%)
Query: 47 PKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSVKYNIPMLIRRKDVKTYGTK 106
PK++ + I Y++ + + P+AT VS+ P+ + R Y
Sbjct: 34 PKVLKETAKEIIKYIDKD---IDKIVTEEDKGAPLATPVSLLSGKPLAMARW--YPYSLS 88
Query: 107 KLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGI 166
+L V E G + + Y + G+ EKGD+ II+D +++G +++ I +++ G
Sbjct: 89 ELNYNVVEIGSEYFEGVVY-----LNGI-EKGDRVAIIDDTLSTGGTVIALIKAIENSGG 142
Query: 167 VVTDVLTIVDREQ-GGRANLK-QLGYTLHSLFTLSSVMDILYKANKIKV 213
+V+DV+ ++++ Q GR L Q G + SL + I K + + +
Sbjct: 143 IVSDVICVIEKTQNNGRKKLFTQTGINVKSL------VKIDVKPHGVDI 185
>gnl|CDD|223970 COG1040, ComFC, Predicted amidophosphoribosyltransferases [General
function prediction only].
Length = 225
Score = 40.8 bits (96), Expect = 2e-04
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 11/95 (11%)
Query: 81 IATAVSVKYNIPMLIRR-KDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGD 139
+A A++ + P+ +RR KD K +R + KK E+
Sbjct: 136 LARALARRLGKPIALRRVKDTSPQQGLK------ALERRRNLKGAFRLKK----GIEEPK 185
Query: 140 KCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTI 174
++++DV T+G+++ E L+ G VLT+
Sbjct: 186 NVLLVDDVYTTGATLKEAAKLLREAGAKRVFVLTL 220
>gnl|CDD|130804 TIGR01743, purR_Bsub, pur operon repressor, Bacillus subtilis type.
This model represents the puring operon repressor PurR
of low-GC Gram-positive bacteria. This homodimeric
repressor contains a large region homologous to
phosphoribosyltransferases and is inhibited by
5-phosphoribosyl 1-pyrophosphate [Purines, pyrimidines,
nucleosides, and nucleotides, Purine ribonucleotide
biosynthesis, Regulatory functions, DNA interactions].
Length = 268
Score = 39.4 bits (92), Expect = 8e-04
Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 13/166 (7%)
Query: 37 YLDLRGIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSVKYNIPMLIR 96
YL L I+ P ++ + I+ +I A V V +P+A AV+ N+P++I
Sbjct: 100 YLYLTDILGKPSILSKIGKILASVFAEREIDA--VMTVATKGIPLAYAVASVLNVPLVIV 157
Query: 97 RKDVK-TYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSIL 155
RKD K T G+ I Y G + K+ + + G K +II+D + +G +I
Sbjct: 158 RKDSKVTEGSTVSIN--YVSGSSNRIQTMSLAKRSL----KTGSKVLIIDDFMKAGGTIN 211
Query: 156 ETINDLKSVGIVVTDVLTIVDREQGGRANLKQLGYTLHSLFTLSSV 201
IN L V + ++D E Y SL TLS++
Sbjct: 212 GMINLLDEFDAEVAGIGVLIDNEG--VDEKLVDDYM--SLLTLSNI 253
>gnl|CDD|181705 PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated.
Length = 189
Score = 36.3 bits (85), Expect = 0.005
Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 13/120 (10%)
Query: 81 IATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKG----DKRKDVKTYGTKKLIEGVYE 136
A ++ +P++ +K + L + VY K+ +KK +
Sbjct: 64 PAVMAALALGVPVVFAKK----KKSLTLTDDVYTATVYSFTKQVTSTVSVSKKFLS---- 115
Query: 137 KGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDRE-QGGRANLKQLGYTLHSL 195
+GD+ +II+D + +G + L I+ ++ G V + ++++ Q GR L++ GY + SL
Sbjct: 116 EGDRVLIIDDFLANGQAALGLIDIIEQAGAKVAGIGIVIEKSFQDGRKLLEEKGYRVESL 175
>gnl|CDD|177930 PLN02293, PLN02293, adenine phosphoribosyltransferase.
Length = 187
Score = 35.8 bits (83), Expect = 0.009
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 16/91 (17%)
Query: 80 PIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLI--EGVYEK 137
PIA A+ K+ +P+ RK K G ++I Y V YGT L G E
Sbjct: 79 PIALAIGAKF-VPL---RKPGKLPG--EVISEEY--------VLEYGTDCLEMHVGAVEP 124
Query: 138 GDKCVIIEDVVTSGSSILETINDLKSVGIVV 168
G++ ++I+D++ +G ++ IN L+ G V
Sbjct: 125 GERALVIDDLIATGGTLCAAINLLERAGAEV 155
>gnl|CDD|130805 TIGR01744, XPRTase, xanthine phosphoribosyltransferase. This model
represent a xanthine-specific phosphoribosyltransferase
of Bacillus subtilis and closely related proteins from
other species, mostly from other Gram-positive bacteria.
The adjacent gene is a xanthine transporter; B. subtilis
can import xanthine for the purine salvage pathway or
for catabolism to obtain nitrogen [Purines, pyrimidines,
nucleosides, and nucleotides, Salvage of nucleosides and
nucleotides].
Length = 191
Score = 35.6 bits (82), Expect = 0.011
Identities = 25/128 (19%), Positives = 53/128 (41%), Gaps = 15/128 (11%)
Query: 81 IATAVSVKY--NIPMLIRRKDVKTYGTKKLIEGVYEKG----DKRKDVKTYGTKKLIEGV 134
IA A+ +P++ RK L + + K+ + + +
Sbjct: 62 IAPAIMTGLKLGVPVVFARK----KKPLTLTDNLLTASVHSFTKQTTSTVAVSGEFLS-- 115
Query: 135 YEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDRE-QGGRANLKQLGYTLH 193
D+ +II+D + +G + ++ K G + + ++++ Q GR L +LGY +
Sbjct: 116 --DQDRVLIIDDFLANGQAAHGLVDIAKQAGAKIAGIGIVIEKSFQNGRQELVELGYRVE 173
Query: 194 SLFTLSSV 201
SL + S+
Sbjct: 174 SLARIQSL 181
>gnl|CDD|180928 PRK07322, PRK07322, adenine phosphoribosyltransferase; Provisional.
Length = 178
Score = 34.6 bits (80), Expect = 0.025
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 21/106 (19%)
Query: 78 ALPIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLI------ 131
+P+A A+S + P ++ RK K Y +I+ V T G +L+
Sbjct: 63 GIPLAHALSRRLGKPYVVARKSRKPYMQDPIIQEVVS--------ITTGKPQLLVLDGAD 114
Query: 132 -EGVYEKGDKCVIIEDVVTSGSSI--LETINDLKSVGIVVTDVLTI 174
E + KG + I++DVV++G ++ LE + ++ G V I
Sbjct: 115 AEKL--KGKRVAIVDDVVSTGGTLTALERL--VERAGGQVVAKAAI 156
>gnl|CDD|218093 pfam04453, OstA_C, Organic solvent tolerance protein. Family
involved in organic solvent tolerance in bacteria. The
region contains several highly conserved, potentially
catalytic, residues.
Length = 385
Score = 30.1 bits (68), Expect = 1.00
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 15/90 (16%)
Query: 16 FDIDALK------FGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDY--LNINKIS 67
F +D F D+ + +G+++ YL +G +SY S Y L + IS
Sbjct: 20 FGVDYTYVSDKNYFRDYSSNLGLRSQTYLLRQGRLSYRGENWDFSLRAQYYQTLRDSIIS 79
Query: 68 ARTVCGVPYTALPIATAVSVKYNIPMLIRR 97
T PY LP + Y +P L
Sbjct: 80 NDT----PYQRLP---QLDYNYYLPDLFLG 102
>gnl|CDD|224124 COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense
mechanisms].
Length = 733
Score = 30.1 bits (68), Expect = 1.1
Identities = 31/130 (23%), Positives = 49/130 (37%), Gaps = 16/130 (12%)
Query: 106 KKLIEGVYEKGDKRKDVKTYGTKKLIE--GVYEKGDKCVIIEDVVTSGSSILETINDLKS 163
K+ ++ KG R+ V+ + G+ K V I E + + K
Sbjct: 385 KEKLKKALGKG--REVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELISEEVKEGKK 442
Query: 164 VGIVV-TDVLTIVDREQGGRANLKQLG---YTLHSLFTLSSVMDILYKANKIKVDTVEDV 219
V ++V T VDR LK+ G LHS FTL D K ++K ++
Sbjct: 443 VLVIVNT-----VDRAIELYEKLKEKGPKVLLLHSRFTL---KDREEKERELKKLFKQNE 494
Query: 220 KKYLCNNQVL 229
+ QV+
Sbjct: 495 GFIVVATQVI 504
>gnl|CDD|235678 PRK06031, PRK06031, phosphoribosyltransferase; Provisional.
Length = 233
Score = 29.3 bits (66), Expect = 1.5
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 138 GDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQGGRANLKQLG 189
G + +I+DV++SG+SI+ + L + GI + + + + R +L G
Sbjct: 154 GRRVALIDDVISSGASIVAGLRLLAACGIEPAGIGAAMLQSERWRESLAAAG 205
>gnl|CDD|187691 cd06266, RNase_HII, Ribonuclease H (RNase H) type II family
(prokaryotic RNase HII and HIII, and eukaryotic RNase
H2/HII). Ribonuclease H (RNase H) is classified into
two families, type I (prokaryotic RNase HI, eukaryotic
RNase H1 and viral RNase H) and type II (prokaryotic
RNase HII and HIII, and eukaryotic RNase H2/HII). RNase
H endonucleolytically hydrolyzes an RNA strand when it
is annealed to a complementary DNA strand in the
presence of divalent cations. The enzyme can be found in
bacteria, archaea, and eukaryotes. Most prokaryotic and
eukaryotic genomes contain multiple RNase H genes, but
no prokaryotic genome contains the combination of only
RNase HI and HIII. Despite a lack of evidence for
homology from sequence comparisons, type I and type II
RNase H share a common fold and similar steric
configurations of the four acidic active-site residues,
suggesting identical or very similar catalytic
mechanisms. It appears that type I and type II RNases H
also have overlapping functions in cells, as
over-expression of Escherichia coli RNase HII can
complement an RNase HI deletion phenotype in E. coli.
Length = 210
Score = 29.1 bits (66), Expect = 1.6
Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 16/80 (20%)
Query: 152 SSILETINDLKSVGIVVTDVLTIVDREQGGRANLKQLGYTLHSLFTLS--SVMDILYKAN 209
+ + I + K+VG +L+ + K L + ++L +S + + ++
Sbjct: 47 EELFDEIKEDKAVG-WAVRILSPEY------ISRKMLARSKYNLNEISHDAAIGLIRNLL 99
Query: 210 K-------IKVDTVEDVKKY 222
+ VDTV +KY
Sbjct: 100 DKGVKVTEVYVDTVGPPEKY 119
>gnl|CDD|216472 pfam01387, Synuclein, Synuclein. There are three types of
synucleins in humans, these are called alpha, beta and
gamma. Alpha synuclein has been found mutated in
families with autosomal dominant Parkinson's disease. A
peptide of alpha synuclein has also been found in
amyloid plaques in Alzheimer's patients.
Length = 132
Score = 28.4 bits (63), Expect = 1.9
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Query: 99 DVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETI 158
DV G K EGV +K K T +K EGV G K E VV +++ E
Sbjct: 2 DVFMKGLSKAKEGVVAAAEKTKQGVTEAAEKTKEGVLYVGSKTK--EGVVQGVATVAEKT 59
Query: 159 NDLKSV--GIVVTDVLTIVDREQGGRANL 185
+ + G VV+ V T+ + G N+
Sbjct: 60 KEQANNVGGAVVSGVNTVAQKTVEGAGNI 88
>gnl|CDD|233267 TIGR01090, apt, adenine phosphoribosyltransferase. A phylogenetic
analysis suggested omitting the bi-directional best hit
homologs from the spirochetes from the seed for This
model and making only tentative predictions of adenine
phosphoribosyltransferase function for this lineage. The
trusted cutoff score is made high for this reason. Most
proteins scoring between the trusted and noise cutoffs
are likely to act as adenine phosphotransferase
[Purines, pyrimidines, nucleosides, and nucleotides,
Salvage of nucleosides and nucleotides].
Length = 169
Score = 28.8 bits (65), Expect = 1.9
Identities = 11/51 (21%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 136 EKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVD-REQGGRANL 185
+ G + +I++D++ +G + T ++ +G V + +++ ++ GRA L
Sbjct: 107 KPGQRVLIVDDLLATGGTAEATDELIRKLGGEVVEAAFLIELKDLNGRAKL 157
>gnl|CDD|211774 TIGR02993, ectoine_eutD, ectoine utilization protein EutD. Members
of this family are putative peptidases or hydrolases
similar to Xaa-Pro aminopeptidase (pfam00557). They
belong to ectoine utilization operons, as found in
Sinorhizobium meliloti 1021 (where it is known to be
induced by ectoine), Mesorhizobium loti, Silicibacter
pomeroyi, Agrobacterium tumefaciens, and Pseudomonas
putida. The exact function is unknown.
Length = 391
Score = 29.1 bits (65), Expect = 2.2
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 9/38 (23%)
Query: 31 GIKTPVYLDLRGIISYPKL---------MDYLSTIIND 59
G K ++D I+ YP MDYLS I+ D
Sbjct: 74 GAKRTAFMDHDNIVGYPDHYVQSTERHPMDYLSEILID 111
>gnl|CDD|177836 PLN02180, PLN02180, gamma-glutamyl transpeptidase 4.
Length = 639
Score = 29.3 bits (65), Expect = 2.2
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 20/70 (28%)
Query: 143 IIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQGGRANLKQLGYTLHSL------- 195
+++DV +G I T++DL+S ++VTD +++ +GYT+H +
Sbjct: 280 LVKDVKKAGGII--TMDDLRSYEVLVTDAMSV-----------DVMGYTIHGMPPPSGGT 326
Query: 196 FTLSSVMDIL 205
S V+DIL
Sbjct: 327 LGFSMVIDIL 336
>gnl|CDD|178129 PLN02513, PLN02513, adenylosuccinate synthase.
Length = 427
Score = 28.8 bits (65), Expect = 2.8
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 133 GVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDR 177
G+ + CVI VV + E I+ L+S G+ L + DR
Sbjct: 60 GILNEKTTCVIGNGVVVHLPGLFEEIDGLESNGVSCEGRLLVSDR 104
>gnl|CDD|215132 PLN02238, PLN02238, hypoxanthine phosphoribosyltransferase.
Length = 189
Score = 28.1 bits (63), Expect = 3.7
Identities = 11/53 (20%), Positives = 28/53 (52%)
Query: 137 KGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQGGRANLKQLG 189
KG +++ED+V +G+++ + L++ G V ++D+ + + +G
Sbjct: 96 KGKHVLLVEDIVDTGNTLSALVAHLEAKGAASVSVCALLDKRARRKVKYELVG 148
>gnl|CDD|183221 PRK11595, PRK11595, DNA utilization protein GntX; Provisional.
Length = 227
Score = 27.3 bits (61), Expect = 6.7
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 137 KGDKCVIIEDVVTSGSSILET 157
+G I++DVVT+GS++ E
Sbjct: 186 QGQHMAIVDDVVTTGSTVAEI 206
>gnl|CDD|237756 PRK14559, PRK14559, putative protein serine/threonine phosphatase;
Provisional.
Length = 645
Score = 27.7 bits (62), Expect = 7.0
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 185 LKQLGYTLHSLFTLS------SVMDILYKANKIKVDTVEDVKKYL 223
L+ LG LFT S S++ +L K+ T+ ++ L
Sbjct: 275 LQDLGQVWQQLFTQSQRTQFESLIPLLQDLQSGKIQTIAQLRLRL 319
>gnl|CDD|187694 cd07181, RNase_HII_eukaryota_like, Mammalian RNase HII is
functional when it forms a complex with two other
accessory protein. Ribonuclease H (RNase H) is
classified into two families, type I (prokaryotic RNase
HI, eukaryotic RNase H1 and viral RNase H) and type II
(prokaryotic RNase HII and HIII, and eukaryotic RNase
H2/HII). RNase H endonucleolytically hydrolyzes an RNA
strand when it is annealed to a complementary DNA strand
in the presence of divalent cations, in DNA replication
and repair. The enzyme can be found in bacteria,
archaea, and eukaryotes. Most prokaryotic and eukaryotic
genomes contain multiple RNase H genes. Despite a lack
of evidence for homology from sequence comparisons, type
I and type II RNase H share a common fold and similar
steric configurations of the four acidic active-site
residues, suggesting identical or very similar catalytic
mechanisms. Eukaryotic RNase HII is active during
replication and is believed to play a role in removal of
Okazaki fragment primers and single ribonucleotides in
DNA-DNA duplexes. Eukaryotic RNase HII is functional
when it forms a complex with two other accessory
proteins. It is speculated that the two accessory
subunits are required for correct folding of the
catalytic subunit of RNase HII. Mutations in the three
subunits of human RNase HII cause neurological disorder.
Length = 221
Score = 27.2 bits (61), Expect = 7.8
Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 21/83 (25%)
Query: 152 SSILETINDLKSVGIVVTDVLTIVDREQGGRANL---KQLGYTLHSLFTLS--SVMDILY 206
+ + + + T +L+ K L T ++L +S + + ++
Sbjct: 47 EELFKKLKEKDDALGWATRILS---------PQYISTKMLARTKYNLNEISHDAAIGLIR 97
Query: 207 KANK-------IKVDTVEDVKKY 222
+ + VDTV +KY
Sbjct: 98 EVLDKGVNVTEVYVDTVGPPEKY 120
>gnl|CDD|197875 smart00788, Adenylsucc_synt, Adenylosuccinate synthetase.
Adenylosuccinate synthetase plays an important role in
purine biosynthesis, by catalyzing the GTP-dependent
conversion of IMP and aspartic acid to AMP.
Adenylosuccinate synthetase has been characterized from
various sources ranging from Escherichia coli (gene
purA) to vertebrate tissues. In vertebrates, two
isozymes are present - one involved in purine
biosynthesis and the other in the purine nucleotide
cycle. The crystal structure of adenylosuccinate
synthetase from E. coli reveals that the dominant
structural element of each monomer of the homodimer is a
central beta-sheet of 10 strands. The first nine strands
of the sheet are mutually parallel with right-handed
crossover connections between the strands. The 10th
strand is antiparallel with respect to the first nine
strands. In addition, the enzyme has two antiparallel
beta-sheets, comprised of two strands and three strands
each, 11 alpha-helices and two short 3/10-helices.
Further, it has been suggested that the similarities in
the GTP-binding domains of the synthetase and the p21ras
protein are an example of convergent evolution of two
distinct families of GTP-binding proteins. Structures of
adenylosuccinate synthetase from Triticum aestivum and
Arabidopsis thaliana when compared with the known
structures from E. coli reveals that the overall fold is
very similar to that of the E. coli protein.
Length = 417
Score = 27.4 bits (62), Expect = 8.7
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 133 GVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDR 177
G+ K VI VV ++ + I +L++ G+ V D L I DR
Sbjct: 56 GILNPNKKNVIGNGVVIDPEALFKEIEELEAKGVDVKDRLFISDR 100
>gnl|CDD|237261 PRK12928, PRK12928, lipoyl synthase; Provisional.
Length = 290
Score = 27.2 bits (61), Expect = 9.2
Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 3/21 (14%)
Query: 154 ILETINDLKSVGIVVTDVLTI 174
++ET+ DL++VG D LTI
Sbjct: 221 VIETLRDLRAVGC---DRLTI 238
>gnl|CDD|220632 pfam10213, MRP-S28, Mitochondrial ribosomal subunit protein. This
is a conserved region of approx. 125 residues of one of
the proteins that makes up the small subunit of the
mitochondrial ribosome. In Saccharomyces cerevisiae the
protein is MRP-S24 whereas in humans it is MRP-S28. The
human mitochondrial ribosome has 29 distinct proteins in
the small subunit and these have homologues in, for
example, Drosophila melanogaster, Caenorhabditis
elegans, and in the genomes of several fungi.
Length = 122
Score = 26.1 bits (58), Expect = 9.7
Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 11/53 (20%)
Query: 169 TDVLTIV-DREQGGRANLKQLGYTLHSLFTLSSVMDILYKANKIKVDTVEDVK 220
TD++ I DR N + LG L LY K D EDV
Sbjct: 60 TDIIKISSDRFPSAAQNKRYLGDLL----------TALYHEAKDLTDDFEDVP 102
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.139 0.396
Gapped
Lambda K H
0.267 0.0847 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,471,289
Number of extensions: 1189795
Number of successful extensions: 1206
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1181
Number of HSP's successfully gapped: 52
Length of query: 250
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 155
Effective length of database: 6,723,972
Effective search space: 1042215660
Effective search space used: 1042215660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (25.9 bits)