RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1963
(250 letters)
>3qw4_B UMP synthase; N-terminal orotidine monophosphate decarboxylase
domain C-TE orotate phosphoribosyltransferase domain,
transferase, LYAS; HET: U5P; 3.00A {Leishmania donovani}
Length = 453
Score = 246 bits (630), Expect = 6e-80
Identities = 69/223 (30%), Positives = 119/223 (53%), Gaps = 24/223 (10%)
Query: 1 MSVSQEKLNHLCLQLFDIDALKFGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDY 60
+ ++ L L D ++FG+F K G +P+Y+DLR +++YP +M ++
Sbjct: 252 IRFAKGASVELAKALVDSHCVRFGNFTLKSGKSSPIYIDLRRLVTYPAIMRLVAREYAKV 311
Query: 61 LNINKISARTVCGVPYTALPIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRK 120
+ + G+PY ALPIA+A+S + N+P++ R++ K YGTK IEG Y+KGD+
Sbjct: 312 --LRHYKFDRIAGLPYAALPIASAISNEMNVPLIYPRREAKIYGTKAAIEGEYKKGDR-- 367
Query: 121 DVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQG 180
VII+D+V++G + +E I L+S G+ V ++ +VDR+ G
Sbjct: 368 --------------------VVIIDDLVSTGETKVEAIEKLRSAGLEVVSIVVLVDRDMG 407
Query: 181 GRANLKQLGYTLHSLFTLSSVMDILYKANKIKVDTVEDVKKYL 223
+A L +LGY ++ L ++ + K+N I DV+ +L
Sbjct: 408 AKAFLNKLGYDFEAVVGLHQLLPLWRKSNAITSQQEADVRAFL 450
>2wns_A Orotate phosphoribosyltransferase; alternative splicing,
multifunctional enzyme, lyase, polymorphism,
decarboxylase, phosphoprotein; HET: OMP; 1.90A {Homo
sapiens}
Length = 205
Score = 233 bits (597), Expect = 4e-78
Identities = 97/221 (43%), Positives = 135/221 (61%), Gaps = 22/221 (9%)
Query: 7 KLNHLCLQLFDIDALKFGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNINKI 66
L L L+D+ A KFGDFV K G+ +P+Y+DLRGI+S P+L+ ++ I+ I
Sbjct: 2 ALGPLVTGLYDVQAFKFGDFVLKSGLSSPIYIDLRGIVSRPRLLSQVADILFQTAQNAGI 61
Query: 67 SARTVCGVPYTALPIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYG 126
S TVCGVPYTALP+AT + IPMLIRRK+ K YGTK+L+EG G+
Sbjct: 62 SFDTVCGVPYTALPLATVICSTNQIPMLIRRKETKDYGTKRLVEGTINPGET-------- 113
Query: 127 TKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQGGRANLK 186
C+IIEDVVTSGSS+LET+ L+ G+ VTD + ++DREQGG+ L+
Sbjct: 114 --------------CLIIEDVVTSGSSVLETVEVLQKEGLKVTDAIVLLDREQGGKDKLQ 159
Query: 187 QLGYTLHSLFTLSSVMDILYKANKIKVDTVEDVKKYLCNNQ 227
G LHS+ TLS +++IL + K+ +TV VK+++
Sbjct: 160 AHGIRLHSVCTLSKMLEILEQQKKVDAETVGRVKRFIQEAH 200
>2yzk_A OPRT, oprtase, orotate phosphoribosyltransferase; rossmann fold,
glycosyltransferase, magnesium, pyrimidine biosynthesis,
structural genomics; 1.80A {Aeropyrum pernix}
Length = 178
Score = 210 bits (537), Expect = 2e-69
Identities = 51/200 (25%), Positives = 91/200 (45%), Gaps = 23/200 (11%)
Query: 11 LCLQLFDIDALKFGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNINKISART 70
L L A+ GDFV G ++ VY+D+R ++ ++ + + +
Sbjct: 2 LAKVLKKRGAVLRGDFVLSSGRRSSVYIDMRRLLGDESSYSVALDLLLEVGGQDLARSSA 61
Query: 71 VCGVPYTALPIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKL 130
V GV LP A ++++ + P+ R + K +GT +EG KG
Sbjct: 62 VIGVATGGLPWAAMLALRLSKPLGYVRPERKGHGTLSQVEGDPPKG-------------- 107
Query: 131 IEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQGGRANLKQLGY 190
+ V+++DV T+G+SI ++I L+S G V L +VDR +G L ++G
Sbjct: 108 ---------RVVVVDDVATTGTSIAKSIEVLRSNGYTVGTALVLVDRGEGAGELLARMGV 158
Query: 191 TLHSLFTLSSVMDILYKANK 210
L S+ TL ++++ L +
Sbjct: 159 RLVSVATLKTILEKLGWGGE 178
>2aee_A OPRT, oprtase, orotate phosphoribosyltransferase; structural
genomics, PSI, structure initiative; 1.95A
{Streptococcus pyogenes} SCOP: c.61.1.1
Length = 211
Score = 208 bits (531), Expect = 4e-68
Identities = 54/231 (23%), Positives = 90/231 (38%), Gaps = 30/231 (12%)
Query: 1 MSVSQEKLNHLCLQLFDIDALKF---GDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTII 57
M+++ + + QL DI A+ F GIK+P+Y D R +SYPK D +
Sbjct: 3 MTLASQ----IATQLLDIKAVYLKPEDPFTWASGIKSPIYTDNRVTLSYPKTRDLIENGF 58
Query: 58 NDYLNINKISARTVCGVPYTALPIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGD 117
+ + + + G +P ++ K +P R K +G
Sbjct: 59 VETIKAHFPEVEVIAGTATAGIPHGAIIADKMTLPFAYIRSKPKDHGAG----------- 107
Query: 118 KRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDR 177
IEG KG K VIIED++++G S+L+ G V V+ I
Sbjct: 108 -----------NQIEGRVLKGQKMVIIEDLISTGGSVLDAAAAASREGADVLGVVAIFTY 156
Query: 178 E-QGGRANLKQLGYTLHSLFTLSSVMDILYKANKIKVDTVEDVKKYLCNNQ 227
E N K+ G L +L + ++ + I D + +KK+ +
Sbjct: 157 ELPKASQNFKEAGIKLITLSNYTELIAVAKLQGYITNDGLHLLKKFKEDQV 207
>3dez_A OPRT, oprtase, orotate phosphoribosyltransferase;
glycosyltransferase, MAGN pyrimidine biosynthesis; 2.40A
{Streptococcus mutans}
Length = 243
Score = 207 bits (528), Expect = 2e-67
Identities = 53/228 (23%), Positives = 88/228 (38%), Gaps = 26/228 (11%)
Query: 4 SQEKLNHLCLQLFDIDALKFGD---FVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDY 60
S + L DI A+ F GIK+P+Y D R +SYP+ + +
Sbjct: 34 SMTLAKDIARDLLDIKAVYLKPEEPFTWASGIKSPIYTDNRITLSYPETRTLIENGFVET 93
Query: 61 LNINKISARTVCGVPYTALPIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRK 120
+ + G +P ++ K N+P+ R K +G
Sbjct: 94 IKEAFPEVEVIAGTATAGIPHGAIIADKMNLPLAYIRSKPKDHGAG-------------- 139
Query: 121 DVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDRE-Q 179
IEG KG K VIIED++++G S+L+ + + G V V+ I E
Sbjct: 140 --------NQIEGRVTKGQKMVIIEDLISTGGSVLDAVAAAQREGADVLGVVAIFTYELP 191
Query: 180 GGRANLKQLGYTLHSLFTLSSVMDILYKANKIKVDTVEDVKKYLCNNQ 227
AN ++ L +L S ++ + I D + +KK+ N +
Sbjct: 192 KATANFEKASVKLVTLSNYSELIKVAKVQGYIDADGLTLLKKFKENQE 239
>3m3h_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine
ribonucleotide biosynthesis, structural genomics,
infectious diseases; 1.75A {Bacillus anthracis} PDB:
3osc_A*
Length = 234
Score = 204 bits (521), Expect = 3e-66
Identities = 48/226 (21%), Positives = 95/226 (42%), Gaps = 26/226 (11%)
Query: 4 SQEKLNHLCLQLFDIDALKF---GDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDY 60
S + L +I A+ F G+K+P+Y D R +SYPK+ ++ + +
Sbjct: 22 SNAMKKEIASHLLEIGAVFLQPNDPFTWSSGMKSPIYCDNRLTLSYPKVRQTIAAGLEEL 81
Query: 61 LNINKISARTVCGVPYTALPIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRK 120
+ + + + G + A VS + ++PM R K +G
Sbjct: 82 IKEHFPTVEVIAGTATAGIAHAAWVSDRMDLPMCYVRSKAKGHGKG-------------- 127
Query: 121 DVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDRE-Q 179
IEG EKG K V++ED++++G S + + L+ G V +++I E +
Sbjct: 128 --------NQIEGKAEKGQKVVVVEDLISTGGSAITCVEALREAGCEVLGIVSIFTYELE 179
Query: 180 GGRANLKQLGYTLHSLFTLSSVMDILYKANKIKVDTVEDVKKYLCN 225
G+ L+ +SL S++ ++ + I + ++++ N
Sbjct: 180 AGKEKLEAANVASYSLSDYSALTEVAAEKGIIGQAETKKLQEWRKN 225
>2p1z_A Phosphoribosyltransferase; STRU genomics, PSI-2, protein structure
initiative, midwest CENT structural genomics, MCSG;
2.44A {Corynebacterium diphtheriae}
Length = 180
Score = 193 bits (492), Expect = 1e-62
Identities = 43/191 (22%), Positives = 72/191 (37%), Gaps = 26/191 (13%)
Query: 13 LQLFDIDALKFGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNINKISARTVC 72
+L A+ G G + Y+DLR + + + ++ + A V
Sbjct: 11 AELVKELAVVHGKVTLSSGKEADYYVDLRRATLHARASRLIGELLRELTADWDYVA--VG 68
Query: 73 GVPYTALPIATAVSV--KYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKL 130
G+ A P+AT+V I + RK+ K +G ++ IEG G K
Sbjct: 69 GLTLGADPVATSVMHADGREIHAFVVRKEAKKHGMQRRIEGPDVVGKK------------ 116
Query: 131 IEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQGGRANLKQLGY 190
+++ED T+G+S L + L+ G V V T+VDR G + G
Sbjct: 117 ----------VLVVEDTTTTGNSPLTAVKALREAGAEVVGVATVVDRATGAADVIAAEGL 166
Query: 191 TLHSLFTLSSV 201
+ L +
Sbjct: 167 EYRYILGLEDL 177
>3mjd_A Orotate phosphoribosyltransferase; IDP02311, csgid, structural
genomics, center for structural genomics of infectious
diseases; 1.90A {Francisella tularensis}
Length = 232
Score = 173 bits (441), Expect = 3e-54
Identities = 37/224 (16%), Positives = 83/224 (37%), Gaps = 39/224 (17%)
Query: 14 QLFDIDALKFGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNINKISARTVCG 73
LKFG+F K G +P + + + +L L+ + + + + G
Sbjct: 29 FALKNQVLKFGEFTLKSGRISPYFFNAGLFNTGAQLA-TLADYYAQLIIKSDVKYDILFG 87
Query: 74 VPYTALPIATAVSVKY------NIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGT 127
Y +P+ A+S ++P RK+ K +G
Sbjct: 88 PAYKGIPLVAAISTVLALKYNIDMPYAFDRKEAKDHGEG--------------------- 126
Query: 128 KKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQGGRANL-- 185
+ G K ++I+DV+T+G++ E+ N LK + + V+ +DR++ + +
Sbjct: 127 -GVFVGADMTNKKVLLIDDVMTAGTAFYESYNKLKIINAKIAGVVLSIDRQEKAKDSDIS 185
Query: 186 ------KQLGYTLHSLFTLSSVMDILYKANKIKVDTVEDVKKYL 223
+ + ++ S+ + + + ++ K+Y
Sbjct: 186 ATKKISQDFNIPVLAVTNFESIFEYVK--ENLDETMIDKFKQYR 227
>1lh0_A OMP synthase; loop closure, monomer closure, orotate
phosphoribosyltransferase; HET: ORO PRP; 2.00A
{Salmonella typhimurium} SCOP: c.61.1.1 PDB: 1opr_A*
1sto_A* 1oro_A
Length = 213
Score = 169 bits (430), Expect = 6e-53
Identities = 47/224 (20%), Positives = 93/224 (41%), Gaps = 38/224 (16%)
Query: 13 LQLFDIDALKFGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNINKISARTVC 72
+ LKFG+F K G K+P + + + L L + L + I +
Sbjct: 10 EFALNKQVLKFGEFTLKSGRKSPYFFNAGLFNTGRDLA-LLGRFYAEALVDSGIEFDLLF 68
Query: 73 GVPYTALPIATAVSVKY------NIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYG 126
G Y +PIAT +V ++P RK+ K +G + G +G
Sbjct: 69 GPAYKGIPIATTTAVALAEHHDKDLPYCFNRKEAKDHGEGGSLVGSALQG---------- 118
Query: 127 TKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQGGRANL- 185
+ ++++DV+T+G++I E++ +++ G + VL +DR++ GR +
Sbjct: 119 -------------RVMLVDDVITAGTAIRESMEIIQAHGATLAGVLISLDRQERGRGEIS 165
Query: 186 ------KQLGYTLHSLFTLSSVMDILYKANKIKVDTVEDVKKYL 223
+ G + S+ TL ++ L + + + + V+ Y
Sbjct: 166 AIQEVERDYGCKVISIITLKDLIAYLEEKPDMA-EHLAAVRAYR 208
>2ps1_A Orotate phosphoribosyltransferase 1; alpha beta, oprtase-OA-PRPP
complex; HET: ORO PRP; 1.75A {Saccharomyces cerevisiae}
PDB: 2pry_A* 2prz_A*
Length = 226
Score = 164 bits (416), Expect = 1e-50
Identities = 49/239 (20%), Positives = 95/239 (39%), Gaps = 36/239 (15%)
Query: 1 MSVSQEKL-NHLCLQLFDIDALKFGDFVTKVGIKTPVYLDLRGIISYPKLM----DYLST 55
M + E + + AL+FG F K G ++P + +L + L Y
Sbjct: 1 MPIMLEDYQKNFLELAIECQALRFGSFKLKSGRESPYFFNLGLFNTGKLLSNLATAYAIA 60
Query: 56 IINDYLNINKISARTVCGVPYTALPIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEK 115
II L + I G Y +P+A V VK + ++++
Sbjct: 61 IIQSDLKFDVI-----FGPAYKGIPLAAIVCVKLAEIGGSKFQNIQY------------- 102
Query: 116 GDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIV 175
RK+ K +G +I G + + +II+DV+T+G++I E + + V + +
Sbjct: 103 AFNRKEAKDHGEGGIIVGSALENKRILIIDDVMTAGTAINEAFEIISNAKGQVVGSIIAL 162
Query: 176 DREQGG-----------RANLKQLGYTLHSLFTLSSVMDILYKANKIKVDTVEDVKKYL 223
DR++ + K+ G + S+ +L ++ L +I + +++YL
Sbjct: 163 DRQEVVSTDDKEGLSATQTVSKKYGIPVLSIVSLIHIITYLE--GRITAEEKSKIEQYL 219
>3n2l_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine
ribonucleotide biosynthesis, infectious diseases; 2.10A
{Vibrio cholerae}
Length = 238
Score = 164 bits (416), Expect = 1e-50
Identities = 45/228 (19%), Positives = 94/228 (41%), Gaps = 46/228 (20%)
Query: 13 LQLFDIDALKFGDFVTKVGIKTPVYLDLRGIISYPKLM----DYLSTIINDYLNINKISA 68
+ LKFG+F K G K+P + + + L Y + +++ + + +
Sbjct: 35 EFALEKQVLKFGEFTLKSGRKSPYFFNAGLFNTGRDLARLGRFYAAALVDSGIEFDVL-- 92
Query: 69 RTVCGVPYTALPIATAVSVKY------NIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDV 122
G Y +PIAT +V + P RK+ K +G + G +G
Sbjct: 93 ---FGPAYKGIPIATTTAVALADHHDVDTPYCFNRKEAKNHGEGGNLVGSKLEG------ 143
Query: 123 KTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQGGR 182
+ ++++DV+T+G++I E++ +++ + VL +DR++ G+
Sbjct: 144 -----------------RVMLVDDVITAGTAIRESMELIQANKADLAGVLVAIDRQEKGK 186
Query: 183 ANL-------KQLGYTLHSLFTLSSVMDILYKANKIKVDTVEDVKKYL 223
L + G + S+ +L+ ++ L + + +E VK Y
Sbjct: 187 GELSAIQEVERDFGCAVISIVSLTDLITYLEQQGNNT-EHLEAVKAYR 233
>1vch_A Phosphoribosyltransferase-related protein; structural genomics,
riken structural genomics/proteomics initiative, RSGI;
1.94A {Thermus thermophilus} SCOP: c.61.1.1
Length = 175
Score = 75.5 bits (186), Expect = 4e-17
Identities = 19/149 (12%), Positives = 49/149 (32%), Gaps = 10/149 (6%)
Query: 36 VYLDLRGIISYPKLMDYLSTIINDYL--NINKISARTVCGVPYTALPIATAVSVKYNIPM 93
+ L + P+ + + + + + +P+ ++ +P
Sbjct: 24 RRIPLVEFLGDPEFTRAAAEALRPLVPKEAEIL-----FTTETSPIPLTHVLAEALGLPY 78
Query: 94 LIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSS 153
++ R+ + Y +I+ V + ++ E + V++ DVV SG +
Sbjct: 79 VVARRRRRPYMEDPIIQEVQT-LTLGVGEVLWLDRRFAE--KLLNQRVVLVSDVVASGET 135
Query: 154 ILETINDLKSVGIVVTDVLTIVDREQGGR 182
+ + G V L + + G
Sbjct: 136 MRAMEKMVLRAGGHVVARLAVFRQGTPGL 164
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.2 bits (124), Expect = 6e-08
Identities = 34/268 (12%), Positives = 79/268 (29%), Gaps = 65/268 (24%)
Query: 5 QEKLNHL--------CLQLFD-------IDALKFG-------------DFVTKVGIKTPV 36
Q +L L CL + +A DF++
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 37 YLDLRGIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSVKYNIPMLIR 96
++ ++ L ++ + R V P ++ + L
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLD--CRPQDLP-REVLTT----NPRRLSIIAESIRDGLAT 343
Query: 97 RKDVKTYGTKKL---IEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVII-EDV-VTSG 151
+ K KL IE ++ +K+ +++ + + +
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNV------LEPAEYRKM----FDR---LSVFPPSAHIPT- 389
Query: 152 SSILETI-NDLKSVGIVVTDVLTIVDREQGGRA---NLKQLGYTLHSL-FTLSSVMDILY 206
+L I D+ +DV+ +V++ K+ ++ S+ L ++ Y
Sbjct: 390 -ILLSLIWFDVIK-----SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443
Query: 207 KANKIKVDTVEDVKKYLCNNQVLPKCDN 234
++ VD K + ++ + P D
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
>1y0b_A Xanthine phosphoribosyltransferase; purine metabolism, STRU
genomics, PSI, protein structure initative, midwest
center structural genomics; HET: G4P; 1.80A {Bacillus
subtilis} SCOP: c.61.1.1 PDB: 2fxv_A*
Length = 197
Score = 48.1 bits (115), Expect = 4e-07
Identities = 35/181 (19%), Positives = 65/181 (35%), Gaps = 16/181 (8%)
Query: 23 FGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIA 82
D V KV P LM + + I+ + + + + A
Sbjct: 18 LSDQVLKVD-------SFLNHQIDPLLMQRIGDEFASRFAKDGITK--IVTIESSGIAPA 68
Query: 83 TAVSVKYNIPMLIRRKDVK-TYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKC 141
+K +P++ RK T L VY + + L D
Sbjct: 69 VMTGLKLGVPVVFARKHKSLTLTDNLLTASVYSFTKQTESQIAVSGTHL-----SDQDHV 123
Query: 142 VIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVD-REQGGRANLKQLGYTLHSLFTLSS 200
+II+D + +G + ++ +K G + + +++ Q GR L +LGY + SL + S
Sbjct: 124 LIIDDFLANGQAAHGLVSIVKQAGASIAGIGIVIEKSFQPGRDELVKLGYRVESLARIQS 183
Query: 201 V 201
+
Sbjct: 184 L 184
>1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix
domain, phosphoribosyltranseferases, domain
recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE;
2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB:
1p4a_A*
Length = 291
Score = 45.4 bits (108), Expect = 6e-06
Identities = 41/184 (22%), Positives = 73/184 (39%), Gaps = 18/184 (9%)
Query: 32 IKTPVYLDLRGIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSVKYNI 91
I Y+ L I+ P ++ + + +I V V +P+A A + N+
Sbjct: 97 ILPGGYVYLTDILGKPSVLSKVGKLFASVFAEREIDV--VMTVATKGIPLAYAAASYLNV 154
Query: 92 PMLIRRKDVK-TYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTS 150
P++I RKD K T G + Y G + K+ + + G +II+D + +
Sbjct: 155 PVVIVRKDNKVTEG--STVSINYVSGSSNRIQTMSLAKRSM----KTGSNVLIIDDFMKA 208
Query: 151 GSSILETINDLKSVGIVVTDVLTIVD-REQGGRANLKQLGYTLHSLFTLSSVMDILYKAN 209
G +I IN L V + +V+ R L +L +L T++ K
Sbjct: 209 GGTINGMINLLDEFNANVAGIGVLVEAEGVDER--LVDEYMSLLTLSTINM------KEK 260
Query: 210 KIKV 213
I++
Sbjct: 261 SIEI 264
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 1e-05
Identities = 27/166 (16%), Positives = 54/166 (32%), Gaps = 55/166 (33%)
Query: 76 YTAL-------PIATAVS-VKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYG- 126
Y AL I + V V Y R G ++ + + + YG
Sbjct: 1767 YAALASLADVMSIESLVEVVFY-------R------G--MTMQVAVPRDELGRS--NYGM 1809
Query: 127 ---TKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQGGRA 183
+ + + ++E V ++E +N V G
Sbjct: 1810 IAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVA----------AG-- 1857
Query: 184 NLKQLGYTLHSLFTLSSVMDILYKANKIKVD------TVEDVKKYL 223
L +L T+++V++ + K KI + ++E+V+ +L
Sbjct: 1858 -------DLRALDTVTNVLNFI-KLQKIDIIELQKSLSLEEVEGHL 1895
>1qb7_A APRT, adenine phosphoribosyltransferase; dinucleotide binding fold;
HET: ADE CIT; 1.50A {Leishmania donovani} SCOP: c.61.1.1
PDB: 1qb8_A* 1qcc_A* 1qcd_A 1mzv_A*
Length = 236
Score = 38.5 bits (90), Expect = 9e-04
Identities = 12/69 (17%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 136 EKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVD-REQGGRANLKQLGYTLHS 194
KG + V+I+DV+ +G + L + +++ VV ++++I+ + + +
Sbjct: 136 GKGSRVVLIDDVLATGGTALSGLQLVEASDAVVVEMVSILSIPFLKAAEKIHSTANSRYK 195
Query: 195 LFTLSSVMD 203
S++
Sbjct: 196 DIKFISLLS 204
>2dy0_A APRT, adenine phosphoribosyltransferase; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 1.25A {Escherichia coli K12}
Length = 190
Score = 37.6 bits (88), Expect = 0.001
Identities = 18/61 (29%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 136 EKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVD-REQGGRANLKQLGYTLHS 194
+ GDK ++++D++ +G +I T+ ++ +G V D I++ + GG L++ G T +S
Sbjct: 124 KPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFDLGGEQRLEKQGITSYS 183
Query: 195 L 195
L
Sbjct: 184 L 184
>1l1q_A Adenine phosphoribosyltransferase; aprtase, giardia lamblia, purine
metabolism, cataly transferase; HET: 9DA; 1.85A {Giardia
intestinalis} SCOP: c.61.1.1 PDB: 1l1r_A*
Length = 186
Score = 34.9 bits (81), Expect = 0.011
Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 125 YGTKKLIE---GVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDV--LTIVD-RE 178
Y IE D ++ +DV+ +G ++L I ++ G+ ++ + +
Sbjct: 101 YQKGVTIEVQKRQLGPHDVVLLHDDVLATGGTLLAAIELCETAGVKPENIYINVLYEIEA 160
Query: 179 QGGRANLKQLGYTLHSL 195
GR + Q L S+
Sbjct: 161 LKGREKVGQKCTRLFSV 177
>1zn8_A APRT, adenine phosphoribosyltransferase; glycosyltransferase,
purine salvage; HET: AMP; 1.76A {Homo sapiens} SCOP:
c.61.1.1 PDB: 1ore_A* 1zn7_A* 1zn9_A*
Length = 180
Score = 31.0 bits (71), Expect = 0.19
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 136 EKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVD-REQGGRANLKQLGYTLHS 194
E G + V+++D++ +G ++ L + V + +++V+ GR L S
Sbjct: 118 EPGQRVVVVDDLLATGGTMNAACELLGRLQAEVLECVSLVELTSLKGREKLA--PVPFFS 175
Query: 195 L 195
L
Sbjct: 176 L 176
>3g3d_A UMP synthase, uridine 5'-monophosphate synthase; C-terminal domain,
orotidine 5'-monophosphate decarboxylase, human,
5-fluoro-6-azido-UMP; HET: 5FU; 1.70A {Homo sapiens}
PDB: 3bvj_A* 3mw7_A* 2p1f_A 2eaw_A 3bgg_A* 3bgj_A*
Length = 312
Score = 31.1 bits (70), Expect = 0.29
Identities = 5/27 (18%), Positives = 15/27 (55%)
Query: 204 ILYKANKIKVDTVEDVKKYLCNNQVLP 230
++ + + + +TV VK+++ N +
Sbjct: 14 LVPRGSHMDAETVGRVKRFIQENVFVA 40
>1g2q_A Adenine phosphoribosyltransferase 1; dimer, single domain,
catalytic loop; 1.50A {Saccharomyces cerevisiae} SCOP:
c.61.1.1 PDB: 1g2p_A
Length = 187
Score = 29.8 bits (68), Expect = 0.56
Identities = 12/74 (16%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 125 YGTKKL-I-EGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVD-REQGG 181
YG+ I + G +I++D++ +G S ++ + + + +++ G
Sbjct: 107 YGSDLFEIQKNAIPAGSNVIIVDDIIATGGSAAAAGELVEQLEANLLEYNFVMELDFLKG 166
Query: 182 RANLKQLGYTLHSL 195
R +L + +L
Sbjct: 167 R---SKLNAPVFTL 177
>3ue9_A Adenylosuccinate synthetase; ssgcid, ligase, ADSS, BTH_I2245,
IMP-aspartate ligase, struc genomics; 1.95A
{Burkholderia thailandensis}
Length = 452
Score = 27.8 bits (63), Expect = 3.3
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 133 GVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDR 177
G+ +G C I VV S ++ + I +L+ G+ V + L I +
Sbjct: 72 GIMREGVACYIGNGVVLSPEALFKEIGELEEAGLSVRERLFISEA 116
>3hid_A Adenylosuccinate synthetase; niaid structural genomics, virulence
associated factor, PURA, purine ribonucleotide
biosynthesis, cytoplasm; 1.60A {Yersinia pestis CO92}
PDB: 1kjx_A* 1kkb_A* 1kkf_A* 1ade_A 1adi_A 1cg0_A*
1ch8_A* 1cib_A* 1gim_A* 1gin_A* 1hon_A* 1hoo_A* 1hop_A*
1juy_A* 1ksz_A* 1nht_A* 1qf4_A* 1qf5_A* 1son_A* 1soo_A*
...
Length = 432
Score = 27.8 bits (63), Expect = 3.5
Identities = 8/45 (17%), Positives = 24/45 (53%)
Query: 133 GVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDR 177
G+ + +I VV + ++++ + +L++ G+ V + L + +
Sbjct: 59 GILRENVISIIGNGVVLAPDALMKEMTELEARGVPVRERLLLSEA 103
>1nul_A XPRT, xanthine-guanine phosphoribosyltransferase; purine salvage
enzym; 1.80A {Escherichia coli} SCOP: c.61.1.1 PDB:
1a96_A* 1a95_A 1a98_A 1a97_A*
Length = 152
Score = 26.6 bits (59), Expect = 6.3
Identities = 12/98 (12%), Positives = 34/98 (34%), Gaps = 18/98 (18%)
Query: 71 VCGVPYTALPIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKL 130
+ V L ++ + I + + +Y D ++++K +
Sbjct: 32 IIAVSRGGLVPGALLARELGIRH-VDTVCISSYD-----------HDNQRELK------V 73
Query: 131 IEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVV 168
++ G+ ++I+D+V +G + + V
Sbjct: 74 LKRAEGDGEGFIVIDDLVDTGGTAVAIREMYPKAHFVT 111
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 26.9 bits (59), Expect = 6.4
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 123 KTYGTKKLIEGVYEKGDKCVIIE 145
K++ K L+ Y +G + +II+
Sbjct: 48 KSFTAKMLLLREYMQGSRVIIID 70
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.139 0.396
Gapped
Lambda K H
0.267 0.0474 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,746,978
Number of extensions: 226295
Number of successful extensions: 491
Number of sequences better than 10.0: 1
Number of HSP's gapped: 447
Number of HSP's successfully gapped: 32
Length of query: 250
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 159
Effective length of database: 4,160,982
Effective search space: 661596138
Effective search space used: 661596138
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.0 bits)