RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1963
(250 letters)
>d2aeea1 c.61.1.1 (A:1-208) Orotate PRTase {Streptococcus pyogenes
[TaxId: 1314]}
Length = 208
Score = 117 bits (295), Expect = 3e-33
Identities = 54/227 (23%), Positives = 89/227 (39%), Gaps = 30/227 (13%)
Query: 1 MSVSQEKLNHLCLQLFDIDALKF---GDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTII 57
M+++ + + QL DI A+ F GIK+P+Y D R +SYPK D +
Sbjct: 1 MTLASQ----IATQLLDIKAVYLKPEDPFTWASGIKSPIYTDNRVTLSYPKTRDLIENGF 56
Query: 58 NDYLNINKISARTVCGVPYTALPIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGD 117
+ + + + G +P ++ K +P
Sbjct: 57 VETIKAHFPEVEVIAGTATAGIPHGAIIADKMTLPFAYI--------------------- 95
Query: 118 KRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDR 177
R K +G IEG KG K VIIED++++G S+L+ G V V+ I
Sbjct: 96 -RSKPKDHGAGNQIEGRVLKGQKMVIIEDLISTGGSVLDAAAAASREGADVLGVVAIFTY 154
Query: 178 EQ-GGRANLKQLGYTLHSLFTLSSVMDILYKANKIKVDTVEDVKKYL 223
E N K+ G L +L + ++ + I D + +KK+
Sbjct: 155 ELPKASQNFKEAGIKLITLSNYTELIAVAKLQGYITNDGLHLLKKFK 201
>d1lh0a_ c.61.1.1 (A:) Orotate PRTase {Salmonella typhimurium
[TaxId: 90371]}
Length = 213
Score = 103 bits (258), Expect = 1e-27
Identities = 43/222 (19%), Positives = 86/222 (38%), Gaps = 38/222 (17%)
Query: 15 LFDIDALKFGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNINKISARTVCGV 74
+ LKFG+F K G K+P + + + L ++
Sbjct: 12 ALNKQVLKFGEFTLKSGRKSPYFFNAGLFNTGRDLALLGRFYAEALVDSGIEFDLLFG-P 70
Query: 75 PYTALPIATAVSVKY------NIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTK 128
Y +PIAT +V ++P RK+ K +G + G +G
Sbjct: 71 AYKGIPIATTTAVALAEHHDKDLPYCFNRKEAKDHGEGGSLVGSALQGR----------- 119
Query: 129 KLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQGGRA----- 183
++++DV+T+G++I E++ +++ G + VL +DR++ GR
Sbjct: 120 ------------VMLVDDVITAGTAIRESMEIIQAHGATLAGVLISLDRQERGRGEISAI 167
Query: 184 --NLKQLGYTLHSLFTLSSVMDILYKANKIKVDTVEDVKKYL 223
+ G + S+ TL ++ L + + + + V+ Y
Sbjct: 168 QEVERDYGCKVISIITLKDLIAYLEEKPDMA-EHLAAVRAYR 208
>d1y0ba1 c.61.1.1 (A:1-191) Xanthine phosphoribosyltransferase
{Bacillus subtilis [TaxId: 1423]}
Length = 191
Score = 81.6 bits (201), Expect = 1e-19
Identities = 29/158 (18%), Positives = 65/158 (41%), Gaps = 7/158 (4%)
Query: 47 PKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSVKYNIPMLIRRKDVKTYGTK 106
P LM + + I+ + + + + A +K +P++ RK T
Sbjct: 32 PLLMQRIGDEFASRFAKDGITK--IVTIESSGIAPAVMTGLKLGVPVVFARKHKSLTLTD 89
Query: 107 KLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGI 166
L+ K+ + + + + D +II+D + +G + ++ +K G
Sbjct: 90 NLLTASVYSFTKQTESQIAVSGTHLS----DQDHVLIIDDFLANGQAAHGLVSIVKQAGA 145
Query: 167 VVTDVLTIVDR-EQGGRANLKQLGYTLHSLFTLSSVMD 203
+ + ++++ Q GR L +LGY + SL + S+ +
Sbjct: 146 SIAGIGIVIEKSFQPGRDELVKLGYRVESLARIQSLEE 183
>d1qb7a_ c.61.1.1 (A:) Adenine PRTase {Leishmania donovani [TaxId:
5661]}
Length = 236
Score = 79.8 bits (196), Expect = 1e-18
Identities = 31/206 (15%), Positives = 69/206 (33%), Gaps = 20/206 (9%)
Query: 9 NHLCLQLFDIDALK----------FGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIIN 58
N L D AL F + + + D+ I P+ + + +
Sbjct: 8 NSFLLD--DSHALSQLLKKSYRWYSPVFSPRNVPR---FADVSSITESPETLKAIRDFLV 62
Query: 59 DYLNINKISARTVCGVPYTALPIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDK 118
+ + G ++V+ IP ++ RK K G E ++ +
Sbjct: 63 QRYRAMSPAPTHILGFDARGFLFGPMIAVELEIPFVLMRKADKNAGLLIRSEPYEKEYKE 122
Query: 119 RKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDR- 177
I KG + V+I+DV+ +G + L + +++ VV ++++I+
Sbjct: 123 AAPEVMTIRYGSI----GKGSRVVLIDDVLATGGTALSGLQLVEASDAVVVEMVSILSIP 178
Query: 178 EQGGRANLKQLGYTLHSLFTLSSVMD 203
+ + + S++
Sbjct: 179 FLKAAEKIHSTANSRYKDIKFISLLS 204
>d1vcha1 c.61.1.1 (A:2-175) Putative phosphoribosyltransferase
TTHA1613 {Thermus thermophilus [TaxId: 274]}
Length = 174
Score = 73.5 bits (180), Expect = 8e-17
Identities = 21/148 (14%), Positives = 50/148 (33%), Gaps = 6/148 (4%)
Query: 36 VYLDLRGIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSVKYNIPMLI 95
+ L + P+ + + + A + + +P+ ++ +P ++
Sbjct: 23 RRIPLVEFLGDPEFTRAAAEALRPLVPKE---AEILFTTETSPIPLTHVLAEALGLPYVV 79
Query: 96 RRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSIL 155
R+ + Y +I+ V +V + + V++ DVV SG ++
Sbjct: 80 ARRRRRPYMEDPIIQEVQTLTLGVGEVLWLDRRF---AEKLLNQRVVLVSDVVASGETMR 136
Query: 156 ETINDLKSVGIVVTDVLTIVDREQGGRA 183
+ G V L + + G A
Sbjct: 137 AMEKMVLRAGGHVVARLAVFRQGTPGLA 164
>d1o57a2 c.61.1.1 (A:75-276) Pur operon repressor (PurR), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 202
Score = 72.0 bits (176), Expect = 5e-16
Identities = 37/188 (19%), Positives = 69/188 (36%), Gaps = 13/188 (6%)
Query: 18 IDALKFGDFVTKVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNINKISARTVCGVPYT 77
+L + I Y+ L I+ P ++ + + +I V V
Sbjct: 14 GQSLANPER-----ILPGGYVYLTDILGKPSVLSKVGKLFASVFAEREIDV--VMTVATK 66
Query: 78 ALPIATAVSVKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEK 137
+P+A A + N+P++I RKD K + R + + +
Sbjct: 67 GIPLAYAAASYLNVPVVIVRKDNKVTEGSTVSINYVSGSSNRIQTMSL-----AKRSMKT 121
Query: 138 GDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDREQGGRANLKQLGYTLHSLFT 197
G +II+D + +G +I IN L V + +V+ E G L +L +L T
Sbjct: 122 GSNVLIIDDFMKAGGTINGMINLLDEFNANVAGIGVLVEAE-GVDERLVDEYMSLLTLST 180
Query: 198 LSSVMDIL 205
++ +
Sbjct: 181 INMKEKSI 188
>d1zn7a1 c.61.1.1 (A:3-180) Adenine PRTase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 178
Score = 65.4 bits (159), Expect = 7e-14
Identities = 25/169 (14%), Positives = 61/169 (36%), Gaps = 15/169 (8%)
Query: 29 KVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLN-INKISARTVCGVPYTALPIATAVSV 87
G+ V+ D+ ++ P ++ +L + + G+ +++
Sbjct: 19 TPGV---VFRDISPVLKDPASFRAAIGLLARHLKATHGGRIDYIAGLDSRGFLFGPSLAQ 75
Query: 88 KYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDV 147
+ + ++ RK K G E G ++ + E G + V+++D+
Sbjct: 76 ELGLGCVLIRKRGKLPGPTLWASYSLEYG--------KAELEIQKDALEPGQRVVVVDDL 127
Query: 148 VTSGSSILETINDLKSVGIVVTDVLTIVDR-EQGGRANLKQLGYTLHSL 195
+ +G ++ L + V + +++V+ GR L SL
Sbjct: 128 LATGGTMNAACELLGRLQAEVLECVSLVELTSLKGREKLA--PVPFFSL 174
>d1l1qa_ c.61.1.1 (A:) Adenine PRTase {Giardia lamblia [TaxId:
5741]}
Length = 181
Score = 63.5 bits (154), Expect = 4e-13
Identities = 30/170 (17%), Positives = 56/170 (32%), Gaps = 15/170 (8%)
Query: 29 KVGIKTPVYLDLRGIISYPKLMDYLSTIINDYLNINKISARTVCGVPYTALPIATAVSVK 88
GI + DL I+S P +D + + + + V G+ + V+
Sbjct: 19 TKGI---AFKDLSDILSTPAALDAVRKEVTAH--YKDVPITKVVGIESRGFILGGIVANS 73
Query: 89 YNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIEDVV 148
+ + RK K G E D ++ +DV+
Sbjct: 74 LGVGFVALRKAGKLPGDVCKCTFDMEYQKGVTIEVQKRQLG-------PHDVVLLHDDVL 126
Query: 149 TSGSSILETINDLKSVGIVVTDVLTIVDRE---QGGRANLKQLGYTLHSL 195
+G ++L I ++ G+ ++ V E GR + Q L S+
Sbjct: 127 ATGGTLLAAIELCETAGVKPENIYINVLYEIEALKGREKVGQKCTRLFSV 176
>d1g2qa_ c.61.1.1 (A:) Adenine PRTase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 178
Score = 57.4 bits (138), Expect = 7e-11
Identities = 23/167 (13%), Positives = 55/167 (32%), Gaps = 14/167 (8%)
Query: 29 KVGIKTPVYLDLRGIISYPKLMDYLSTIINDYL--NINKISARTVCGVPYTALPIATAVS 86
GI ++ D I P L L +L ++ + G+ ++
Sbjct: 22 SEGI---LFEDFLPIFRNPGLFQKLIDAFKLHLEEAFPEVKIDYIVGLESRGFLFGPTLA 78
Query: 87 VKYNIPMLIRRKDVKTYGTKKLIEGVYEKGDKRKDVKTYGTKKLIEGVYEKGDKCVIIED 146
+ + + RK K G + ++ + G +I++D
Sbjct: 79 LALGVGFVPVRKAGKLPGECFKA--------TYEKEYGSDLFEIQKNAIPAGSNVIIVDD 130
Query: 147 VVTSGSSILETINDLKSVGIVVTDVLTIVDR-EQGGRANLKQLGYTL 192
++ +G S ++ + + + +++ GR+ L +TL
Sbjct: 131 IIATGGSAAAAGELVEQLEANLLEYNFVMELDFLKGRSKLNAPVFTL 177
>d1nula_ c.61.1.1 (A:) Xanthine-guanine PRTase (XPRTase)
{Escherichia coli [TaxId: 562]}
Length = 150
Score = 28.9 bits (64), Expect = 0.34
Identities = 8/50 (16%), Positives = 19/50 (38%)
Query: 119 RKDVKTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVV 168
D K+++ G+ ++I+D+V +G + + V
Sbjct: 60 SYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIREMYPKAHFVT 109
>d1qf5a_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA
{Escherichia coli [TaxId: 562]}
Length = 431
Score = 26.5 bits (58), Expect = 3.4
Identities = 10/55 (18%), Positives = 26/55 (47%)
Query: 123 KTYGTKKLIEGVYEKGDKCVIIEDVVTSGSSILETINDLKSVGIVVTDVLTIVDR 177
+ + G+ + +I VV S +++++ + +L+ GI V + L + +
Sbjct: 48 EKTVLHLIPSGILRENVTSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSEA 102
>d2pbza2 d.142.1.9 (A:100-312) 5-formaminoimidazole-4-carboxamide
ribonucleotide synthetase PurP {Thermococcus
kodakaraensis [TaxId: 311400]}
Length = 213
Score = 25.1 bits (55), Expect = 8.5
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 4/49 (8%)
Query: 53 LSTIINDYLNINKISARTVCGV----PYTALPIATAVSVKYNIPMLIRR 97
L + I++R G Y+ L +S+ I +R
Sbjct: 153 LHFAYDGSFKAIGIASRIDGGSNADHWYSELYWGERLSMGRRIARELRL 201
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.139 0.396
Gapped
Lambda K H
0.267 0.0649 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 908,434
Number of extensions: 42532
Number of successful extensions: 130
Number of sequences better than 10.0: 1
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 18
Length of query: 250
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 167
Effective length of database: 1,268,006
Effective search space: 211757002
Effective search space used: 211757002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.0 bits)