BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1964
(531 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DRX|A Chain A, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|B Chain B, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|C Chain C, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|D Chain D, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|E Chain E, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRY|A Chain A, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|B Chain B, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|C Chain C, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|D Chain D, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|E Chain E, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
Length = 202
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 74/132 (56%), Gaps = 10/132 (7%)
Query: 9 GNPCQYVKLNVGGSLHYTTIGTLTKH-DTMLRAMFSGRMEILTDSE--GWVLIDRCGKHF 65
G+ ++V+LNVGG+ TT TL + + L + ++ +D + G LIDR +F
Sbjct: 8 GSVSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYF 67
Query: 66 GIILNFLRDGQVSLPENPKDVAE--LLAEAKYYCITELTDLCEQTIKRKQRETE--PICR 121
G +LN+LR G++ + KD+AE +L EA++Y IT L L + I+ + +T P+
Sbjct: 68 GPVLNYLRHGKLVI---NKDLAEEGVLEEAEFYNITSLIKLVKDKIRERDSKTSQVPVKH 124
Query: 122 VPLITSLKEEQL 133
V + +EE+L
Sbjct: 125 VYRVLQCQEEEL 136
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 34/50 (68%), Gaps = 5/50 (10%)
Query: 329 GWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAE--LLAEAKYYCITAL 376
G LIDR +FG +LN+LR G++ + KD+AE +L EA++Y IT+L
Sbjct: 56 GAYLIDRDPTYFGPVLNYLRHGKLVI---NKDLAEEGVLEEAEFYNITSL 102
>pdb|3DRZ|A Chain A, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|B Chain B, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|C Chain C, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|D Chain D, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|E Chain E, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
Length = 107
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 64/110 (58%), Gaps = 8/110 (7%)
Query: 8 SGNPCQYVKLNVGGSLHYTTIGTLTKH-DTMLRAMFSGRMEILTDSE--GWVLIDRCGKH 64
SG+ ++V+LNVGG+ TT TL + + L + ++ +D + G LIDR +
Sbjct: 1 SGSVSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTY 60
Query: 65 FGIILNFLRDGQVSLPENPKDVAE--LLAEAKYYCITELTDLCEQTIKRK 112
FG +LN+LR G++ + KD+AE +L EA++Y IT L L + I+ +
Sbjct: 61 FGPVLNYLRHGKLVI---NKDLAEEGVLEEAEFYNITSLIKLVKDKIRER 107
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 34/50 (68%), Gaps = 5/50 (10%)
Query: 329 GWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAE--LLAEAKYYCITAL 376
G LIDR +FG +LN+LR G++ + KD+AE +L EA++Y IT+L
Sbjct: 50 GAYLIDRDPTYFGPVLNYLRHGKLVI---NKDLAEEGVLEEAEFYNITSL 96
>pdb|2OCW|A Chain A, Solution Structure Of Human Secretory Component
pdb|3CHN|S Chain S, Solution Structure Of Human Secretory Iga1
pdb|3CM9|S Chain S, Solution Structure Of Human Siga2
Length = 585
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 25/101 (24%)
Query: 33 KHDTMLRAMFSGRMEILTDSEGWV---------LIDRCGKH-FGIILNFLRDGQVSLPEN 82
K+ + +GR +L DSEGWV L++ G F +ILN L
Sbjct: 364 KYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGF--- 420
Query: 83 PKDVAELLAEAKYYCITELTDLCEQTIKRKQRETEPICRVP 123
Y+C+T L T++ K E EP +VP
Sbjct: 421 ------------YWCLTNGDTLWRTTVEIKIIEGEPNLKVP 449
>pdb|3B1C|A Chain A, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus: Internal Aldimine Form
pdb|3B1C|B Chain B, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus: Internal Aldimine Form
pdb|3B1C|C Chain C, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus: Internal Aldimine Form
pdb|3B1C|D Chain D, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus: Internal Aldimine Form
pdb|3B1D|A Chain A, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: External Aldimine
Form
pdb|3B1D|B Chain B, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: External Aldimine
Form
pdb|3B1D|C Chain C, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: External Aldimine
Form
pdb|3B1D|D Chain D, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: External Aldimine
Form
pdb|3B1E|A Chain A, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: Alpha-Aminoacrylate
Form
pdb|3B1E|B Chain B, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: Alpha-Aminoacrylate
Form
pdb|3B1E|C Chain C, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: Alpha-Aminoacrylate
Form
pdb|3B1E|D Chain D, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: Alpha-Aminoacrylate
Form
Length = 392
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 13/122 (10%)
Query: 90 LAEAKYYCITELTDLCEQTIKRKQRETEPICRVPLITSLKEEQLLLNATAKPVVKLLINR 149
L +KY T L T K K+ ET+P I + E + P VK I+
Sbjct: 3 LGSSKYNFQTAPNRLSHHTYKWKETETDPQLLPAWIADMDFEVM-------PEVKQAIHD 55
Query: 150 HNNK--YSYTSTSDDNLLKNIELFDKLALRFS---GRLLFIKDVIGSSEICCWSFFGHGK 204
+ + Y YT SD+ LL+ + ++K ++S ++F++ V+ + I +F G+
Sbjct: 56 YAEQLVYGYTYASDE-LLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAFTKEGE 114
Query: 205 KI 206
+
Sbjct: 115 AV 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,823,043
Number of Sequences: 62578
Number of extensions: 653890
Number of successful extensions: 1781
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1773
Number of HSP's gapped (non-prelim): 12
length of query: 531
length of database: 14,973,337
effective HSP length: 103
effective length of query: 428
effective length of database: 8,527,803
effective search space: 3649899684
effective search space used: 3649899684
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 54 (25.4 bits)