Query psy1964
Match_columns 531
No_of_seqs 401 out of 1524
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 20:45:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1964.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1964hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2716|consensus 100.0 1.6E-42 3.6E-47 340.3 11.3 216 10-243 2-218 (230)
2 KOG2715|consensus 100.0 1.2E-31 2.5E-36 251.9 5.1 156 11-169 19-183 (210)
3 KOG2716|consensus 100.0 1.4E-31 3.1E-36 263.3 4.3 194 311-528 22-229 (230)
4 PF02214 BTB_2: BTB/POZ domain 99.9 3E-23 6.4E-28 175.9 5.2 90 15-105 1-94 (94)
5 KOG1665|consensus 99.8 6E-22 1.3E-26 194.0 5.7 99 8-107 4-105 (302)
6 KOG2714|consensus 99.8 2.6E-20 5.6E-25 195.3 7.7 95 8-103 6-102 (465)
7 KOG2723|consensus 99.8 1.4E-19 3.1E-24 177.6 5.8 102 7-108 3-105 (221)
8 KOG1665|consensus 99.7 2.2E-18 4.7E-23 169.2 3.4 103 312-417 29-142 (302)
9 KOG2715|consensus 99.6 3.1E-16 6.8E-21 148.3 1.5 90 315-406 43-144 (210)
10 KOG3713|consensus 99.5 1.3E-14 2.7E-19 155.1 8.0 101 11-112 29-140 (477)
11 KOG4390|consensus 99.5 2.7E-14 5.8E-19 149.1 3.9 100 9-112 36-139 (632)
12 PF02214 BTB_2: BTB/POZ domain 99.4 1.7E-14 3.8E-19 122.3 1.1 66 314-380 20-94 (94)
13 KOG2714|consensus 99.4 3.7E-13 8E-18 142.0 4.9 64 315-379 34-103 (465)
14 KOG2723|consensus 99.3 1E-12 2.2E-17 129.6 4.2 70 315-384 31-106 (221)
15 smart00225 BTB Broad-Complex, 98.9 3.5E-09 7.6E-14 84.4 5.8 89 15-106 2-90 (90)
16 KOG1545|consensus 98.5 5.8E-08 1.2E-12 101.7 3.7 88 11-100 59-148 (507)
17 smart00225 BTB Broad-Complex, 97.8 1.4E-05 3.1E-10 63.5 2.8 65 315-381 21-90 (90)
18 KOG4390|consensus 97.6 4.2E-05 9.1E-10 81.3 3.2 63 315-378 62-129 (632)
19 PHA03098 kelch-like protein; P 97.5 0.00017 3.7E-09 78.3 7.3 92 14-112 13-104 (534)
20 PF00651 BTB: BTB/POZ domain; 97.5 0.00021 4.5E-09 60.7 5.3 96 12-111 10-109 (111)
21 KOG3840|consensus 97.3 0.00018 4E-09 74.6 4.2 89 10-99 93-185 (438)
22 KOG3713|consensus 97.3 0.00019 4.1E-09 78.1 4.2 74 301-376 29-127 (477)
23 PHA02790 Kelch-like protein; P 96.8 0.0023 5.1E-08 69.5 6.8 91 17-112 26-119 (480)
24 PHA02713 hypothetical protein; 96.6 0.0042 9.1E-08 69.1 6.8 95 13-112 26-122 (557)
25 KOG4441|consensus 95.1 0.038 8.2E-07 62.0 6.2 95 14-112 38-133 (571)
26 PHA03098 kelch-like protein; P 94.7 0.033 7E-07 60.7 4.3 70 315-386 33-103 (534)
27 PHA02790 Kelch-like protein; P 94.4 0.038 8.3E-07 60.2 4.0 71 315-387 43-119 (480)
28 PF00651 BTB: BTB/POZ domain; 89.5 0.35 7.5E-06 40.9 3.2 70 315-385 33-108 (111)
29 PHA02713 hypothetical protein; 88.5 0.53 1.2E-05 52.6 4.7 69 315-387 48-122 (557)
30 KOG4441|consensus 85.0 0.83 1.8E-05 51.5 3.7 70 315-386 58-132 (571)
31 KOG3840|consensus 73.0 1.9 4.2E-05 45.7 1.7 61 312-373 115-184 (438)
32 KOG4350|consensus 61.7 8.2 0.00018 42.6 3.6 107 5-113 37-145 (620)
33 KOG1545|consensus 61.6 4.3 9.4E-05 44.1 1.6 47 328-375 101-148 (507)
34 KOG0783|consensus 35.8 21 0.00046 42.6 1.9 93 14-106 560-682 (1267)
35 PF11025 GP40: Glycoprotein GP 28.1 50 0.0011 31.6 2.7 33 466-498 5-42 (165)
36 KOG4591|consensus 25.2 66 0.0014 32.8 3.1 55 57-111 110-164 (280)
37 KOG4350|consensus 25.0 81 0.0018 35.2 3.9 73 315-387 66-144 (620)
38 KOG4682|consensus 22.9 55 0.0012 36.3 2.2 72 314-387 89-169 (488)
39 KOG2075|consensus 20.9 1.1E+02 0.0024 34.6 4.0 69 315-385 141-214 (521)
No 1
>KOG2716|consensus
Probab=100.00 E-value=1.6e-42 Score=340.35 Aligned_cols=216 Identities=35% Similarity=0.446 Sum_probs=204.0
Q ss_pred CCCceEEEEECCeEEEeeHhhhccCCCchhhhhcCCcccccCCCCcEEEcCCCCChhhhhhccccceeecCCCchhHHHH
Q psy1964 10 NPCQYVKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAEL 89 (531)
Q Consensus 10 ~~~~~VkLNVGG~lF~TT~sTLtk~dS~L~~mfs~r~~~~~D~~G~~FIDRDP~~F~~ILNYLR~Gkl~LP~~~~el~eL 89 (531)
..++.|+|||||+.|.|+++|||++|+||+.|+++++++..|++|+|||||+|+||+.||||||+|.++||++..++.+|
T Consensus 2 ~~~~~vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFIDRSpKHF~~ILNfmRdGdv~LPe~~kel~El 81 (230)
T KOG2716|consen 2 SMSETVKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFIDRSPKHFDTILNFMRDGDVDLPESEKELKEL 81 (230)
T ss_pred CccceEEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEecCChhHHHHHHHhhhcccccCccchHHHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHhccCCCCccccccccCHHHHHHHhhccCCCEEEEEEeeeCCeeEeecCChhhHhhhhh
Q psy1964 90 LAEAKYYCITELTDLCEQTIKRKQRETEPICRVPLITSLKEEQLLLNATAKPVVKLLINRHNNKYSYTSTSDDNLLKNIE 169 (531)
Q Consensus 90 leEAeFY~L~~Lv~~ce~~l~~~e~~~~p~~~v~vlts~~ee~~lI~~s~kpvvkll~~~~~~~ysy~s~s~~nllknie 169 (531)
++||+||.|++|+++|+.++........ +++++..+.+++++.+.||++.+.++++++.+.|.+.+.+....+.+
T Consensus 82 ~~EA~fYlL~~Lv~~C~~~i~~~~~~~~-----~~~~~~~e~~~ii~~~~Kp~l~i~y~~~~~~~~~~p~~f~~~~~~e~ 156 (230)
T KOG2716|consen 82 LREAEFYLLDGLVELCQSAIARLIRGYI-----TPIESSEELLQIIANSSKPVLVINYNRANNELSYPPNGFDFQEFNEE 156 (230)
T ss_pred HHHHHHhhHHHHHHHHHHHhhhcccCcc-----ccccchHHHHHHhhccCCCeEEEEecCCCCceeeCCCCCcHHHHHHH
Confidence 9999999999999999999987754322 36778889999999999999999999999999999999998889999
Q ss_pred hhhhhhheeCCeeEEEEeccCCCceeEeEEecCceeeeeeeeeeeeeecccceeeeccch-hhHHhhcceeeeec
Q psy1964 170 LFDKLALRFSGRLLFIKDVIGSSEICCWSFFGHGKKIAEVCCTSIVYATDKKHTKQSVWL-KFLKINQSIFFFNH 243 (531)
Q Consensus 170 ~Fdkl~~~f~~ri~f~kdv~g~~eic~Wsfy~~~~k~~e~cc~~i~y~~~~k~~kv~fpe-ri~ee~~~~~~~~~ 243 (531)
.+|++...| +++|||+++++++|..+.||.+.+++...++++..+++ +.|.++++.|+++.
T Consensus 157 ~~d~l~i~f-------------~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 218 (230)
T KOG2716|consen 157 YSDKLDNYF-------------KESESESFELTIKKFPERCKDSEVPSWAKSFVKSFISEIRIYITSLFKLLKEI 218 (230)
T ss_pred HHHHHHhHh-------------hhhhhhhhhccccccCCccccCCCchhhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 999999988 59999999999999999999999999999999999999 99999999999987
No 2
>KOG2715|consensus
Probab=99.97 E-value=1.2e-31 Score=251.88 Aligned_cols=156 Identities=26% Similarity=0.399 Sum_probs=137.7
Q ss_pred CCceEEEEECCeEEEeeHhhhccC-CCchhhhhcCCcc--cccCCCCcEEEcCCCCChhhhhhccccceeecCCCchhHH
Q psy1964 11 PCQYVKLNVGGSLHYTTIGTLTKH-DTMLRAMFSGRME--ILTDSEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVA 87 (531)
Q Consensus 11 ~~~~VkLNVGG~lF~TT~sTLtk~-dS~L~~mfs~r~~--~~~D~~G~~FIDRDP~~F~~ILNYLR~Gkl~LP~~~~el~ 87 (531)
.+.||+|||||+.|.||++||.+. .|||.++++..+. ..+|++|+|||||||.+|.+||||||+||+.+.. ..+ +
T Consensus 19 ~s~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~-l~e-e 96 (210)
T KOG2715|consen 19 VSLWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNK-LSE-E 96 (210)
T ss_pred ceEEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhh-hhh-h
Confidence 358999999999999999999999 5999999998764 4678999999999999999999999999999876 444 6
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHhccCC--CCcccc-ccccCHHHHH-HHh-hccCCCEEEEEEeeeCCee-EeecCCh
Q psy1964 88 ELLAEAKYYCITELTDLCEQTIKRKQRET--EPICRV-PLITSLKEEQ-LLL-NATAKPVVKLLINRHNNKY-SYTSTSD 161 (531)
Q Consensus 88 eLleEAeFY~L~~Lv~~ce~~l~~~e~~~--~p~~~v-~vlts~~ee~-~lI-~~s~kpvvkll~~~~~~~y-sy~s~s~ 161 (531)
.+++||+||+++.|+++++++|++++... .+.++| ||++|+++++ ||+ +++++|.|++++++ +++| +|+++.+
T Consensus 97 GvL~EAefyn~~~li~likd~i~dRd~~~tq~~~k~vyrvLqcqeeeltqmvStmsDgw~~~qlv~i-~ssy~ny~~e~~ 175 (210)
T KOG2715|consen 97 GVLEEAEFYNDPSLIQLIKDRIQDRDAMVTQEADKFVYRVLQCQEEELTQMVSTMSDGWKIEQLVSI-SSSYPNYGDEKE 175 (210)
T ss_pred ccchhhhccCChHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHhhccccHhHHHHhhc-cccCCCCCCcch
Confidence 69999999999999999999999988532 467777 8999999987 666 78999999999988 7778 9999999
Q ss_pred hhHhhhhh
Q psy1964 162 DNLLKNIE 169 (531)
Q Consensus 162 ~nllknie 169 (531)
.+||.-++
T Consensus 176 ~E~lcvvs 183 (210)
T KOG2715|consen 176 EEFLCVVS 183 (210)
T ss_pred HHHHHHHH
Confidence 99986543
No 3
>KOG2716|consensus
Probab=99.97 E-value=1.4e-31 Score=263.27 Aligned_cols=194 Identities=28% Similarity=0.321 Sum_probs=158.7
Q ss_pred CCCCCCchhhhhhcCCC------CCcEEEcCCCCChHHHHhccccCcccCCCChhhHHHHHHHHHccCcHHHHHHHHHhh
Q psy1964 311 GQSRRINALRCQRFGRM------EGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCITALCLNFSYFL 384 (531)
Q Consensus 311 g~t~~dS~L~~MfSgr~------~G~iFIDRDp~~F~~ILNyLR~G~l~Lp~~~~~l~~Ll~EAeFY~L~~Lv~~~~~~l 384 (531)
+-||.|+||++||++++ +|+|||||+|+||..||||||||.++||++..++++|++||+||.|++|+++|+.++
T Consensus 22 TLtk~dg~fk~m~e~~i~~~~d~s~~IFIDRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~EA~fYlL~~Lv~~C~~~i 101 (230)
T KOG2716|consen 22 TLTKFDGFFKTMLETDIPVEKDESGCIFIDRSPKHFDTILNFMRDGDVDLPESEKELKELLREAEFYLLDGLVELCQSAI 101 (230)
T ss_pred hhhhhhhHHHHHhhcCCccccCCcCcEEecCChhHHHHHHHhhhcccccCccchHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 45789999999999997 599999999999999999999999999999999999999999999999999999988
Q ss_pred hhcccCCCceEEEcccccccc-eecccCCCcccceeeeeeccCcccccccccccCCCCCCccc------eeeeeecCeEE
Q psy1964 385 LGIWHSKSTYWIKILQFLGLE-LYFSGTSHDVLPLGVSYRFSGRLLFIKDVIGSRTSHDVLPF------GVSYRFSGRLL 457 (531)
Q Consensus 385 ~~~~~~k~~~vi~vi~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~s~d~l~~------~l~l~f~~rvl 457 (531)
...... -++++.+..+. ..+..+.||+|.+.|. +.++.. +|..+++|...| ++...|
T Consensus 102 ~~~~~~----~~~~~~~~~e~~~ii~~~~Kp~l~i~y~-~~~~~~------~~~p~~f~~~~~~e~~~d~l~i~f----- 165 (230)
T KOG2716|consen 102 ARLIRG----YITPIESSEELLQIIANSSKPVLVINYN-RANNEL------SYPPNGFDFQEFNEEYSDKLDNYF----- 165 (230)
T ss_pred hhcccC----ccccccchHHHHHHhhccCCCeEEEEec-CCCCce------eeCCCCCcHHHHHHHHHHHHHhHh-----
Confidence 644211 12345555555 4467888898887654 333322 123333433322 566666
Q ss_pred EEeeccCCCceeEeEEecCceeeeeEeeeeeEeecCccceeecCCcchhHHHHhhhhhhccC-CCCCccccC
Q psy1964 458 FIKDVIGSSEICCWSFFGHGKKIAEVCCTSIVYATDKKHTKVEFPEARIYEETLNIILYEAR-NPPDQELGH 528 (531)
Q Consensus 458 fikdv~~~~eic~wsfyg~g~k~aevcctsivyat~kk~tkvefpeari~eetln~llye~~-~~pd~~l~~ 528 (531)
+++|||++|++++|+++.||.+.+++..+++++..+++++.|+++++.|+++.+ ++|++.++.
T Consensus 166 --------~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 229 (230)
T KOG2716|consen 166 --------KESESESFELTIKKFPERCKDSEVPSWAKSFVKSFISEIRIYITSLFKLLKEINQRLPLNSLLG 229 (230)
T ss_pred --------hhhhhhhhhccccccCCccccCCCchhhhhhhhhhhhHHHHHHHHHHHHHHHHhhccchhhhhc
Confidence 699999999999999999999999999999999999999999999999999976 788877765
No 4
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=99.88 E-value=3e-23 Score=175.87 Aligned_cols=90 Identities=41% Similarity=0.711 Sum_probs=76.0
Q ss_pred EEEEECCeEEEeeHhhhccC-CCchhhhhcCC-cccccCCCCcEEEcCCCCChhhhhhcccc-ceeecCCCchhHHHHHH
Q psy1964 15 VKLNVGGSLHYTTIGTLTKH-DTMLRAMFSGR-MEILTDSEGWVLIDRCGKHFGIILNFLRD-GQVSLPENPKDVAELLA 91 (531)
Q Consensus 15 VkLNVGG~lF~TT~sTLtk~-dS~L~~mfs~r-~~~~~D~~G~~FIDRDP~~F~~ILNYLR~-Gkl~LP~~~~el~eLle 91 (531)
|+|||||++|.|+++||+++ +|+|++|++++ .....+++|+|||||||.+|++||||||+ |+++.|.+. .+..|++
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~~~l~~~~~~-~~~~l~~ 79 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTGGKLPIPDEI-CLEELLE 79 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHTSSB---TTS--HHHHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhcCccCCCCch-hHHHHHH
Confidence 78999999999999999988 89999999986 45566789999999999999999999999 788877664 4789999
Q ss_pred HHHhcCcHHH-HHHH
Q psy1964 92 EAKYYCITEL-TDLC 105 (531)
Q Consensus 92 EAeFY~L~~L-v~~c 105 (531)
||+||+|++| ++.|
T Consensus 80 Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 80 EAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHT-HHHHBHHC
T ss_pred HHHHcCCCccccCCC
Confidence 9999999998 7765
No 5
>KOG1665|consensus
Probab=99.85 E-value=6e-22 Score=194.01 Aligned_cols=99 Identities=46% Similarity=0.640 Sum_probs=89.0
Q ss_pred cCCCCceEEEEECCeEEEeeHhhhccC--CCchhhhhcCCcc-cccCCCCcEEEcCCCCChhhhhhccccceeecCCCch
Q psy1964 8 SGNPCQYVKLNVGGSLHYTTIGTLTKH--DTMLRAMFSGRME-ILTDSEGWVLIDRCGKHFGIILNFLRDGQVSLPENPK 84 (531)
Q Consensus 8 ~~~~~~~VkLNVGG~lF~TT~sTLtk~--dS~L~~mfs~r~~-~~~D~~G~~FIDRDP~~F~~ILNYLR~Gkl~LP~~~~ 84 (531)
..+++.||+|||||++|.||++||+-. ||||++||+++.. -..|+.|++||||+|+||++||||||+|.++...+.
T Consensus 4 ~~~~~~~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~~s~i- 82 (302)
T KOG1665|consen 4 SSNLSSMVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPSLSDI- 82 (302)
T ss_pred ccChhhhheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCceeecCCc-
Confidence 356789999999999999999999865 8999999999753 456889999999999999999999999999876664
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHH
Q psy1964 85 DVAELLAEAKYYCITELTDLCEQ 107 (531)
Q Consensus 85 el~eLleEAeFY~L~~Lv~~ce~ 107 (531)
....+++||.||+|-+|++.+++
T Consensus 83 ~~lgvLeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 83 DCLGVLEEARFFQILSLKDHLED 105 (302)
T ss_pred cHHHHHHHhhHHhhHhHHhHHhh
Confidence 46789999999999999999988
No 6
>KOG2714|consensus
Probab=99.81 E-value=2.6e-20 Score=195.34 Aligned_cols=95 Identities=38% Similarity=0.544 Sum_probs=86.7
Q ss_pred cCCCCceEEEEECCeEEEeeHhhhccC--CCchhhhhcCCcccccCCCCcEEEcCCCCChhhhhhccccceeecCCCchh
Q psy1964 8 SGNPCQYVKLNVGGSLHYTTIGTLTKH--DTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKD 85 (531)
Q Consensus 8 ~~~~~~~VkLNVGG~lF~TT~sTLtk~--dS~L~~mfs~r~~~~~D~~G~~FIDRDP~~F~~ILNYLR~Gkl~LP~~~~e 85 (531)
-+.+.+.|+|||||++|.|+++||+.. ||||++++++++...+|++|++||||||++|..||||||+|.++++....+
T Consensus 6 ~~~~~~~V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~~g~~~~ 85 (465)
T KOG2714|consen 6 MGSSGDRVKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLDASGVFPE 85 (465)
T ss_pred cCCCCceEEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCCCccCchh
Confidence 356679999999999999999999998 899999999999999999999999999999999999999999999765543
Q ss_pred HHHHHHHHHhcCcHHHHH
Q psy1964 86 VAELLAEAKYYCITELTD 103 (531)
Q Consensus 86 l~eLleEAeFY~L~~Lv~ 103 (531)
..+.+||.||||.+|++
T Consensus 86 -~llhdEA~fYGl~~llr 102 (465)
T KOG2714|consen 86 -RLLHDEAMFYGLTPLLR 102 (465)
T ss_pred -hhhhhhhhhcCcHHHHH
Confidence 55666999999999997
No 7
>KOG2723|consensus
Probab=99.78 E-value=1.4e-19 Score=177.60 Aligned_cols=102 Identities=37% Similarity=0.602 Sum_probs=94.2
Q ss_pred ccCCCCceEEEEECCeEEEeeHhhhccC-CCchhhhhcCCcccccCCCCcEEEcCCCCChhhhhhccccceeecCCCchh
Q psy1964 7 VSGNPCQYVKLNVGGSLHYTTIGTLTKH-DTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKD 85 (531)
Q Consensus 7 i~~~~~~~VkLNVGG~lF~TT~sTLtk~-dS~L~~mfs~r~~~~~D~~G~~FIDRDP~~F~~ILNYLR~Gkl~LP~~~~e 85 (531)
.+...+++|+|||||+.|+|+..||+++ +|+|++||++..++.+|..|.||||||+.+|++||||||+..+.+|++..+
T Consensus 3 ~~~~~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fIDRDG~lFRyvL~~LRt~~l~lpe~f~e 82 (221)
T KOG2723|consen 3 LTSEYPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFIDRDGFLFRYVLDYLRTKALLLPEDFAE 82 (221)
T ss_pred cccccCCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEEcCCcchHHHHHHHhcccccccchhhhh
Confidence 4556788999999999999999999999 999999999988889999999999999999999999999988999999999
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHH
Q psy1964 86 VAELLAEAKYYCITELTDLCEQT 108 (531)
Q Consensus 86 l~eLleEAeFY~L~~Lv~~ce~~ 108 (531)
...|.+||+||+|+.+...+...
T Consensus 83 ~~~L~rEA~f~~l~~~~~~l~~~ 105 (221)
T KOG2723|consen 83 VERLVREAEFFQLEAPVTYLLNS 105 (221)
T ss_pred HHHHHHHHHHHccccHHHHHhcc
Confidence 99999999999999888765543
No 8
>KOG1665|consensus
Probab=99.72 E-value=2.2e-18 Score=169.15 Aligned_cols=103 Identities=31% Similarity=0.310 Sum_probs=86.0
Q ss_pred CCCCCchhhhhhcCCC-------CCcEEEcCCCCChHHHHhccccCcccCCCChhhHHHHHHHHHccCcHHHHHHHHHhh
Q psy1964 312 QSRRINALRCQRFGRM-------EGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCITALCLNFSYFL 384 (531)
Q Consensus 312 ~t~~dS~L~~MfSgr~-------~G~iFIDRDp~~F~~ILNyLR~G~l~Lp~~~~~l~~Ll~EAeFY~L~~Lv~~~~~~l 384 (531)
+..|||||.+||+|+. +|.+||||+|+||++||||||+|.++...+. +..++++||+||+|-+|++.+++.-
T Consensus 29 ~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~~s~i-~~lgvLeeArff~i~sL~~hle~~~ 107 (302)
T KOG1665|consen 29 IREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPSLSDI-DCLGVLEEARFFQILSLKDHLEDSR 107 (302)
T ss_pred ccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCceeecCCc-cHHHHHHHhhHHhhHhHHhHHhhhc
Confidence 3569999999999985 6999999999999999999999999887775 8999999999999999999999843
Q ss_pred hhc----ccCCCceEEEcccccccceecccCCCcccc
Q psy1964 385 LGI----WHSKSTYWIKILQFLGLELYFSGTSHDVLP 417 (531)
Q Consensus 385 ~~~----~~~k~~~vi~vi~~~~~~l~~~~~~~~~~~ 417 (531)
.+- .+..+.++|++||. +++|++|+|.-..-
T Consensus 108 ~e~pe~~~pltR~diik~iqT--~elRfqGvNlSGaD 142 (302)
T KOG1665|consen 108 KEVPEVEAPLTRIDIIKCIQT--EELRFQGVNLSGAD 142 (302)
T ss_pred cCCCcCCCCccHHHHHHHhhh--hheeeecccccccc
Confidence 211 12246777888988 67999998866443
No 9
>KOG2715|consensus
Probab=99.58 E-value=3.1e-16 Score=148.26 Aligned_cols=90 Identities=26% Similarity=0.251 Sum_probs=79.0
Q ss_pred CCchhhhhhcCCC--------CCcEEEcCCCCChHHHHhccccCcccCCCChhhHHHHHHHHHccCcHHHHHHHHHhhhh
Q psy1964 315 RINALRCQRFGRM--------EGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCITALCLNFSYFLLG 386 (531)
Q Consensus 315 ~dS~L~~MfSgr~--------~G~iFIDRDp~~F~~ILNyLR~G~l~Lp~~~~~l~~Ll~EAeFY~L~~Lv~~~~~~l~~ 386 (531)
+.|||+.+.++.+ +|+|||||||.+|++||||||+|++.+.+ ..-+++|+||+||++++|+++++++|.+
T Consensus 43 p~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~--l~eeGvL~EAefyn~~~li~likd~i~d 120 (210)
T KOG2715|consen 43 PKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNK--LSEEGVLEEAEFYNDPSLIQLIKDRIQD 120 (210)
T ss_pred cHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhh--hhhhccchhhhccCChHHHHHHHHHHHH
Confidence 5589999998875 69999999999999999999999999876 3568899999999999999999999987
Q ss_pred cc----cCCCceEEEcccccccce
Q psy1964 387 IW----HSKSTYWIKILQFLGLEL 406 (531)
Q Consensus 387 ~~----~~k~~~vi~vi~~~~~~l 406 (531)
+. +..++++++++||+.+++
T Consensus 121 Rd~~~tq~~~k~vyrvLqcqeeel 144 (210)
T KOG2715|consen 121 RDAMVTQEADKFVYRVLQCQEEEL 144 (210)
T ss_pred HhhhccccchhHHHHHHHHHHHHH
Confidence 73 223678899999999984
No 10
>KOG3713|consensus
Probab=99.53 E-value=1.3e-14 Score=155.14 Aligned_cols=101 Identities=27% Similarity=0.377 Sum_probs=85.9
Q ss_pred CCceEEEEECCeEEEeeHhhhccC-CCchhhhhcCCc-----cccc---CCCCcEEEcCCCCChhhhhhccccceeecCC
Q psy1964 11 PCQYVKLNVGGSLHYTTIGTLTKH-DTMLRAMFSGRM-----EILT---DSEGWVLIDRCGKHFGIILNFLRDGQVSLPE 81 (531)
Q Consensus 11 ~~~~VkLNVGG~lF~TT~sTLtk~-dS~L~~mfs~r~-----~~~~---D~~G~~FIDRDP~~F~~ILNYLR~Gkl~LP~ 81 (531)
.++.|+|||||++|.+.++||.++ .++|+++...+. .++. ..+.+||+||+|..|++||||||+||++.|.
T Consensus 29 ~~~~i~lNVGG~r~~l~~~tL~~~P~TRL~rL~~~~~~~~~l~~cDdyd~~~~EyfFDR~P~~F~~Vl~fYrtGkLH~p~ 108 (477)
T KOG3713|consen 29 LDRRVRLNVGGTRHELYWSTLKRFPLTRLGRLADCNSHEERLELCDDYDPVTNEYFFDRHPGAFAYVLNFYRTGKLHVPA 108 (477)
T ss_pred cCcEEEEeeCCeeEEehHHHHhhCchhHHHHHHhcccchhhhhhccccCcccCeeeeccChHHHHHHHHHHhcCeecccc
Confidence 456999999999999999999999 799999877541 1232 3578999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhcCcHH--HHHHHHHHHHHh
Q psy1964 82 NPKDVAELLAEAKYYCITE--LTDLCEQTIKRK 112 (531)
Q Consensus 82 ~~~el~eLleEAeFY~L~~--Lv~~ce~~l~~~ 112 (531)
+.|. ..+.+|.+||+|++ +..+|...+.++
T Consensus 109 ~vC~-~~F~eEL~yWgI~~~~le~CC~~~~~~~ 140 (477)
T KOG3713|consen 109 DVCP-LSFEEELDYWGIDEAHLESCCWMRYRQR 140 (477)
T ss_pred ccch-HHHHHHHHHhCCChhhhhHHhHHHHhhc
Confidence 9997 56999999999976 667887766543
No 11
>KOG4390|consensus
Probab=99.46 E-value=2.7e-14 Score=149.12 Aligned_cols=100 Identities=28% Similarity=0.423 Sum_probs=82.8
Q ss_pred CCCCceEEEEECCeEEEeeHhhhccC-CCchhhhhcCCccc-ccCCCCcEEEcCCCCChhhhhhccccceeecCCCchhH
Q psy1964 9 GNPCQYVKLNVGGSLHYTTIGTLTKH-DTMLRAMFSGRMEI-LTDSEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDV 86 (531)
Q Consensus 9 ~~~~~~VkLNVGG~lF~TT~sTLtk~-dS~L~~mfs~r~~~-~~D~~G~~FIDRDP~~F~~ILNYLR~Gkl~LP~~~~el 86 (531)
...++.+.|||.|++|.|.+.||.++ |++|+. ...++ ...++|+||+||||++|+|||||+|+|+++.|...| +
T Consensus 36 ~r~De~lvlNvSGrRFeTWknTLeryPdTLLGS---sEkeFFy~~dt~eYFFDRDPdiFRhvLnFYRTGkLHyPR~EC-i 111 (632)
T KOG4390|consen 36 KRQDELLVLNVSGRRFETWKNTLERYPDTLLGS---SEKEFFYDEDTGEYFFDRDPDIFRHVLNFYRTGKLHYPRHEC-I 111 (632)
T ss_pred hccCcEEEEeccccchhHHHhHHHhCchhhhCC---cchheeecCCcccccccCChHHHHHHHHHhhcCcccCchHHH-H
Confidence 34578899999999999999999999 899886 22233 345679999999999999999999999999998777 5
Q ss_pred HHHHHHHHhcCc-HHHH-HHHHHHHHHh
Q psy1964 87 AELLAEAKYYCI-TELT-DLCEQTIKRK 112 (531)
Q Consensus 87 ~eLleEAeFY~L-~~Lv-~~ce~~l~~~ 112 (531)
...-+|..|||| ++|+ ++|-+..+++
T Consensus 112 ~AyDeELaF~Gl~PeligDCCyEeYkDr 139 (632)
T KOG4390|consen 112 SAYDEELAFYGLVPELIGDCCYEEYKDR 139 (632)
T ss_pred HHhhhhhhHhcccHHHHhhhhhHHHhhh
Confidence 778999999998 6677 5776555443
No 12
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=99.45 E-value=1.7e-14 Score=122.26 Aligned_cols=66 Identities=32% Similarity=0.458 Sum_probs=53.4
Q ss_pred CCCchhhhhhcCC-------CCCcEEEcCCCCChHHHHhcccc-CcccCCCChhhHHHHHHHHHccCcHHH-HHHH
Q psy1964 314 RRINALRCQRFGR-------MEGWVLIDRCGKHFGIILNFLRD-GQVSLPENPKDVAELLAEAKYYCITAL-CLNF 380 (531)
Q Consensus 314 ~~dS~L~~MfSgr-------~~G~iFIDRDp~~F~~ILNyLR~-G~l~Lp~~~~~l~~Ll~EAeFY~L~~L-v~~~ 380 (531)
.++|+|+.||++. .+|.+||||||.+|++||||||+ |.++.|.+ ..+..+++||+||+|++| ++.|
T Consensus 20 ~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~~~l~~~~~-~~~~~l~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 20 YPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTGGKLPIPDE-ICLEELLEEAEFYGLDELFIEDC 94 (94)
T ss_dssp STTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHTSSB---TT-S-HHHHHHHHHHHT-HHHHBHHC
T ss_pred CCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhcCccCCCCc-hhHHHHHHHHHHcCCCccccCCC
Confidence 4899999999986 17999999999999999999999 67777655 478999999999999999 7654
No 13
>KOG2714|consensus
Probab=99.37 E-value=3.7e-13 Score=142.04 Aligned_cols=64 Identities=31% Similarity=0.404 Sum_probs=56.3
Q ss_pred CCchhhhhhcCCC------CCcEEEcCCCCChHHHHhccccCcccCCCChhhHHHHHHHHHccCcHHHHHH
Q psy1964 315 RINALRCQRFGRM------EGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCITALCLN 379 (531)
Q Consensus 315 ~dS~L~~MfSgr~------~G~iFIDRDp~~F~~ILNyLR~G~l~Lp~~~~~l~~Ll~EAeFY~L~~Lv~~ 379 (531)
+||||+++++||| .|++||||||.+|+.||||||+|.++++... ....|.+||.||+|++|++.
T Consensus 34 ~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~~g~~-~~~llhdEA~fYGl~~llrr 103 (465)
T KOG2714|consen 34 RDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLDASGVF-PERLLHDEAMFYGLTPLLRR 103 (465)
T ss_pred cchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCCCccCc-hhhhhhhhhhhcCcHHHHHH
Confidence 6999999999998 5889999999999999999999999996543 44555559999999999993
No 14
>KOG2723|consensus
Probab=99.31 E-value=1e-12 Score=129.58 Aligned_cols=70 Identities=27% Similarity=0.365 Sum_probs=64.9
Q ss_pred CCchhhhhhcCCC------CCcEEEcCCCCChHHHHhccccCcccCCCChhhHHHHHHHHHccCcHHHHHHHHHhh
Q psy1964 315 RINALRCQRFGRM------EGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCITALCLNFSYFL 384 (531)
Q Consensus 315 ~dS~L~~MfSgr~------~G~iFIDRDp~~F~~ILNyLR~G~l~Lp~~~~~l~~Ll~EAeFY~L~~Lv~~~~~~l 384 (531)
+||||.+||+|.. .|.+||||||.+|+|||||||+..+.+|++.++...|.+||+||+|++++..+....
T Consensus 31 ~ds~L~~~f~~~~~~~~d~~g~~fIDRDG~lFRyvL~~LRt~~l~lpe~f~e~~~L~rEA~f~~l~~~~~~l~~~~ 106 (221)
T KOG2723|consen 31 PDSMLARMFSGELPLLRDSKGRYFIDRDGFLFRYVLDYLRTKALLLPEDFAEVERLVREAEFFQLEAPVTYLLNSG 106 (221)
T ss_pred hHHHHHhhcCCCCCccccccccEEEcCCcchHHHHHHHhcccccccchhhhhHHHHHHHHHHHccccHHHHHhccc
Confidence 8999999999975 699999999999999999999988899999999999999999999999988776644
No 15
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=98.87 E-value=3.5e-09 Score=84.38 Aligned_cols=89 Identities=35% Similarity=0.539 Sum_probs=75.4
Q ss_pred EEEEECCeEEEeeHhhhccCCCchhhhhcCCcccccCCCCcEEEcCCCCChhhhhhccccceeecCCCchhHHHHHHHHH
Q psy1964 15 VKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAK 94 (531)
Q Consensus 15 VkLNVGG~lF~TT~sTLtk~dS~L~~mfs~r~~~~~D~~G~~FIDRDP~~F~~ILNYLR~Gkl~LP~~~~el~eLleEAe 94 (531)
|.|+|||..|.+.+..|+...++|..|+.+.+... +...-.+.|.++..|+.+|+|+.+|++.++.+ .+..+++.|+
T Consensus 2 v~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~-~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~--~~~~l~~~a~ 78 (90)
T smart00225 2 VTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKES-KKSEIYLDDVSPEDFRALLEFLYTGKLDLPEE--NVEELLELAD 78 (90)
T ss_pred eEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccC-CCCEEEecCCCHHHHHHHHHeecCceeecCHH--HHHHHHHHHH
Confidence 56999999999999999999999999998754321 23344466899999999999999999988865 5688999999
Q ss_pred hcCcHHHHHHHH
Q psy1964 95 YYCITELTDLCE 106 (531)
Q Consensus 95 FY~L~~Lv~~ce 106 (531)
||+++.|++.|+
T Consensus 79 ~~~~~~l~~~c~ 90 (90)
T smart00225 79 YLQIPGLVELCE 90 (90)
T ss_pred HHCcHHHHhhhC
Confidence 999999998874
No 16
>KOG1545|consensus
Probab=98.52 E-value=5.8e-08 Score=101.73 Aligned_cols=88 Identities=25% Similarity=0.419 Sum_probs=73.9
Q ss_pred CCceEEEEECCeEEEeeHhhhccC-CCchhhhhcCCcccccCCCCcEEEcCCCCChhhhhhccccc-eeecCCCchhHHH
Q psy1964 11 PCQYVKLNVGGSLHYTTIGTLTKH-DTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLRDG-QVSLPENPKDVAE 88 (531)
Q Consensus 11 ~~~~VkLNVGG~lF~TT~sTLtk~-dS~L~~mfs~r~~~~~D~~G~~FIDRDP~~F~~ILNYLR~G-kl~LP~~~~el~e 88 (531)
.++.|.+||.|-+|.|..+||.++ +++|+.-- .|+..-.+-..+||+||+..-|..||.|+++| ++..|.+.+ +..
T Consensus 59 ~~ervvINisGlRFeTql~TL~qfP~TLLGDp~-kR~rfFdplrNEyFFDRnRpSFdaILYyYQSGGRlrRPvnVP-lDi 136 (507)
T KOG1545|consen 59 CCERVVINISGLRFETQLKTLAQFPNTLLGDPA-KRMRFFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVP-LDI 136 (507)
T ss_pred cccEEEEEeccceehHHHHHHhhCchhhcCCHH-HhcccccccchhhcccCCCCccceEEEEeecCceecCCcccc-HHH
Confidence 358999999999999999999999 89988632 23344455678999999999999999999985 588887754 788
Q ss_pred HHHHHHhcCcHH
Q psy1964 89 LLAEAKYYCITE 100 (531)
Q Consensus 89 LleEAeFY~L~~ 100 (531)
+++|..||+|.+
T Consensus 137 F~eEirFyqlG~ 148 (507)
T KOG1545|consen 137 FLEEIRFYQLGD 148 (507)
T ss_pred HHHHHHHHHhhH
Confidence 999999999965
No 17
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=97.80 E-value=1.4e-05 Score=63.52 Aligned_cols=65 Identities=29% Similarity=0.366 Sum_probs=55.4
Q ss_pred CCchhhhhhcCCC----CCc-EEEcCCCCChHHHHhccccCcccCCCChhhHHHHHHHHHccCcHHHHHHHH
Q psy1964 315 RINALRCQRFGRM----EGW-VLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCITALCLNFS 381 (531)
Q Consensus 315 ~dS~L~~MfSgr~----~G~-iFIDRDp~~F~~ILNyLR~G~l~Lp~~~~~l~~Ll~EAeFY~L~~Lv~~~~ 381 (531)
..++|+.||.+.+ ... .+.|.++..|..+|+|+.+|.+.++.+ ....+++.|+||++++|++.|+
T Consensus 21 ~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~--~~~~l~~~a~~~~~~~l~~~c~ 90 (90)
T smart00225 21 CSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEE--NVEELLELADYLQIPGLVELCE 90 (90)
T ss_pred cCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHH--HHHHHHHHHHHHCcHHHHhhhC
Confidence 5788999998865 233 466899999999999999999988765 6899999999999999998873
No 18
>KOG4390|consensus
Probab=97.58 E-value=4.2e-05 Score=81.34 Aligned_cols=63 Identities=22% Similarity=0.306 Sum_probs=49.8
Q ss_pred CCchhhh----hhcCCCCCcEEEcCCCCChHHHHhccccCcccCCCChhhHHHHHHHHHccCc-HHHHH
Q psy1964 315 RINALRC----QRFGRMEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCI-TALCL 378 (531)
Q Consensus 315 ~dS~L~~----MfSgr~~G~iFIDRDp~~F~~ILNyLR~G~l~Lp~~~~~l~~Ll~EAeFY~L-~~Lv~ 378 (531)
||++|.+ .|-...+|.||.||||+.|++||||.|+|++.-|... -+...-+|--||+| ++|+-
T Consensus 62 PdTLLGSsEkeFFy~~dt~eYFFDRDPdiFRhvLnFYRTGkLHyPR~E-Ci~AyDeELaF~Gl~Pelig 129 (632)
T KOG4390|consen 62 PDTLLGSSEKEFFYDEDTGEYFFDRDPDIFRHVLNFYRTGKLHYPRHE-CISAYDEELAFYGLVPELIG 129 (632)
T ss_pred chhhhCCcchheeecCCcccccccCChHHHHHHHHHhhcCcccCchHH-HHHHhhhhhhHhcccHHHHh
Confidence 5665543 3444558999999999999999999999999999753 56677789999997 55654
No 19
>PHA03098 kelch-like protein; Provisional
Probab=97.53 E-value=0.00017 Score=78.27 Aligned_cols=92 Identities=20% Similarity=0.370 Sum_probs=77.4
Q ss_pred eEEEEECCeEEEeeHhhhccCCCchhhhhcCCcccccCCCCcEEEcCCCCChhhhhhccccceeecCCCchhHHHHHHHH
Q psy1964 14 YVKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEA 93 (531)
Q Consensus 14 ~VkLNVGG~lF~TT~sTLtk~dS~L~~mfs~r~~~~~D~~G~~FIDRDP~~F~~ILNYLR~Gkl~LP~~~~el~eLleEA 93 (531)
.|.+.|||+.|..-+..|.....+|.+||++.+. ...+-|.-++..|+.||+|+-+|++.+..+ .+.+|+.-|
T Consensus 13 ~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~-----~~~i~l~~~~~~~~~~l~y~Ytg~~~i~~~--~~~~ll~~A 85 (534)
T PHA03098 13 SIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK-----ENEINLNIDYDSFNEVIKYIYTGKINITSN--NVKDILSIA 85 (534)
T ss_pred EEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC-----CceEEecCCHHHHHHHHHHhcCCceEEcHH--HHHHHHHHH
Confidence 4555569999999999999999999999998764 334433339999999999999999998764 368899999
Q ss_pred HhcCcHHHHHHHHHHHHHh
Q psy1964 94 KYYCITELTDLCEQTIKRK 112 (531)
Q Consensus 94 eFY~L~~Lv~~ce~~l~~~ 112 (531)
.+|+++.|.+.|++.|.+.
T Consensus 86 ~~l~~~~l~~~C~~~l~~~ 104 (534)
T PHA03098 86 NYLIIDFLINLCINYIIKI 104 (534)
T ss_pred HHhCcHHHHHHHHHHHHHh
Confidence 9999999999999987653
No 20
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=97.45 E-value=0.00021 Score=60.71 Aligned_cols=96 Identities=24% Similarity=0.414 Sum_probs=76.0
Q ss_pred CceEEEEEC-CeEEEeeHhhhccCCCchhhhhcCCcccccCCCC--cEE-EcCCCCChhhhhhccccceeecCCCchhHH
Q psy1964 12 CQYVKLNVG-GSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEG--WVL-IDRCGKHFGIILNFLRDGQVSLPENPKDVA 87 (531)
Q Consensus 12 ~~~VkLNVG-G~lF~TT~sTLtk~dS~L~~mfs~r~~~~~D~~G--~~F-IDRDP~~F~~ILNYLR~Gkl~LP~~~~el~ 87 (531)
..=+.|.|| |..|..-+..|+....+|..|+.+.. ..+.+ .+- -|=++..|..+++|+-+|.+.++ +...+.
T Consensus 10 ~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~-~~~~~~ 85 (111)
T PF00651_consen 10 FSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSK---FKESTVPEISLPDVSPEAFEAFLEYMYTGEIEIN-SDENVE 85 (111)
T ss_dssp S--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTT---STTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE--TTTHH
T ss_pred CCCEEEEECCCEEEeechhhhhccchhhhhcccccc---cccccccccccccccccccccccccccCCcccCC-HHHHHH
Confidence 345789999 99999999999999999999999861 11222 343 34579999999999999998887 224568
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHH
Q psy1964 88 ELLAEAKYYCITELTDLCEQTIKR 111 (531)
Q Consensus 88 eLleEAeFY~L~~Lv~~ce~~l~~ 111 (531)
.+++=|++|+++.|.+.|.+.|.+
T Consensus 86 ~ll~lA~~~~~~~L~~~~~~~l~~ 109 (111)
T PF00651_consen 86 ELLELADKLQIPELKKACEKFLQE 109 (111)
T ss_dssp HHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHh
Confidence 899999999999999999998865
No 21
>KOG3840|consensus
Probab=97.34 E-value=0.00018 Score=74.64 Aligned_cols=89 Identities=24% Similarity=0.330 Sum_probs=75.1
Q ss_pred CCCceEEEEECCeEEEeeHhhhccC-CCchhhhhcCCcccc-cCCCCcEEEcC--CCCChhhhhhccccceeecCCCchh
Q psy1964 10 NPCQYVKLNVGGSLHYTTIGTLTKH-DTMLRAMFSGRMEIL-TDSEGWVLIDR--CGKHFGIILNFLRDGQVSLPENPKD 85 (531)
Q Consensus 10 ~~~~~VkLNVGG~lF~TT~sTLtk~-dS~L~~mfs~r~~~~-~D~~G~~FIDR--DP~~F~~ILNYLR~Gkl~LP~~~~e 85 (531)
.+.+.+.+-|.|++|..+...|+.+ ++||+.||.+...+. .++.|+|-+.- ....|+.||+|+.+|.+..|++..
T Consensus 93 g~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~~vS- 171 (438)
T KOG3840|consen 93 GEGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPSSVS- 171 (438)
T ss_pred CCCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCCCCc-
Confidence 4467899999999999999999999 899999999987654 46778886543 557899999999999999999764
Q ss_pred HHHHHHHHHhcCcH
Q psy1964 86 VAELLAEAKYYCIT 99 (531)
Q Consensus 86 l~eLleEAeFY~L~ 99 (531)
+.+|.+.++|..|+
T Consensus 172 vpELrEACDYLlip 185 (438)
T KOG3840|consen 172 VSELREACDYLLVP 185 (438)
T ss_pred hHHHHhhcceEEee
Confidence 67888888887764
No 22
>KOG3713|consensus
Probab=97.31 E-value=0.00019 Score=78.09 Aligned_cols=74 Identities=23% Similarity=0.296 Sum_probs=56.5
Q ss_pred ccceeeeeecCCCC-----------CCchhhhhhcCC-C-------------CCcEEEcCCCCChHHHHhccccCcccCC
Q psy1964 301 LARLRGILWRGQSR-----------RINALRCQRFGR-M-------------EGWVLIDRCGKHFGIILNFLRDGQVSLP 355 (531)
Q Consensus 301 ~~r~r~~~~~g~t~-----------~dS~L~~MfSgr-~-------------~G~iFIDRDp~~F~~ILNyLR~G~l~Lp 355 (531)
+++...++| |+++ |.|-|+.+-.-+ + ...||.||+|..|++||||.|+|++..|
T Consensus 29 ~~~~i~lNV-GG~r~~l~~~tL~~~P~TRL~rL~~~~~~~~~l~~cDdyd~~~~EyfFDR~P~~F~~Vl~fYrtGkLH~p 107 (477)
T KOG3713|consen 29 LDRRVRLNV-GGTRHELYWSTLKRFPLTRLGRLADCNSHEERLELCDDYDPVTNEYFFDRHPGAFAYVLNFYRTGKLHVP 107 (477)
T ss_pred cCcEEEEee-CCeeEEehHHHHhhCchhHHHHHHhcccchhhhhhccccCcccCeeeeccChHHHHHHHHHHhcCeeccc
Confidence 445666777 6665 445555554411 0 5899999999999999999999999999
Q ss_pred CChhhHHHHHHHHHccCcHHH
Q psy1964 356 ENPKDVAELLAEAKYYCITAL 376 (531)
Q Consensus 356 ~~~~~l~~Ll~EAeFY~L~~L 376 (531)
.+. =-..+.+|.+|++|++.
T Consensus 108 ~~v-C~~~F~eEL~yWgI~~~ 127 (477)
T KOG3713|consen 108 ADV-CPLSFEEELDYWGIDEA 127 (477)
T ss_pred ccc-chHHHHHHHHHhCCChh
Confidence 774 45778899999999763
No 23
>PHA02790 Kelch-like protein; Provisional
Probab=96.80 E-value=0.0023 Score=69.53 Aligned_cols=91 Identities=16% Similarity=0.148 Sum_probs=75.4
Q ss_pred EEECCeEEEeeHhhhccCCCchhhhhcCCcccccCCCCcEE---EcCCCCChhhhhhccccceeecCCCchhHHHHHHHH
Q psy1964 17 LNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVL---IDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEA 93 (531)
Q Consensus 17 LNVGG~lF~TT~sTLtk~dS~L~~mfs~r~~~~~D~~G~~F---IDRDP~~F~~ILNYLR~Gkl~LP~~~~el~eLleEA 93 (531)
|-|.|..|..-+.-|.....+|.+||++.+.-. ...+. +|=|+..++.||+|+-+|++.+..+. ++.+++-|
T Consensus 26 ~~~~~~~~~~HR~VLAa~S~YFraMF~~~~~Es---~~~v~~~~~~v~~~~l~~lldy~YTg~l~it~~n--V~~ll~aA 100 (480)
T PHA02790 26 IEAIGGNIIVNSTILKKLSPYFRTHLRQKYTKN---KDPVTRVCLDLDIHSLTSIVIYSYTGKVYIDSHN--VVNLLRAS 100 (480)
T ss_pred EEEcCcEEeeehhhhhhcCHHHHHHhcCCcccc---ccceEEEecCcCHHHHHHHHHhheeeeEEEeccc--HHHHHHHH
Confidence 456677888899999999999999999876422 12233 27889999999999999999997654 67899999
Q ss_pred HhcCcHHHHHHHHHHHHHh
Q psy1964 94 KYYCITELTDLCEQTIKRK 112 (531)
Q Consensus 94 eFY~L~~Lv~~ce~~l~~~ 112 (531)
.+++++.+++.|.+-|.+.
T Consensus 101 ~~Lqi~~v~~~C~~fL~~~ 119 (480)
T PHA02790 101 ILTSVEFIIYTCINFILRD 119 (480)
T ss_pred HHhChHHHHHHHHHHHHhh
Confidence 9999999999999988754
No 24
>PHA02713 hypothetical protein; Provisional
Probab=96.57 E-value=0.0042 Score=69.06 Aligned_cols=95 Identities=24% Similarity=0.282 Sum_probs=76.9
Q ss_pred ceEEEEEC-CeEEEeeHhhhccCCCchhhhhcCCcccccCCCCcE-EEcCCCCChhhhhhccccceeecCCCchhHHHHH
Q psy1964 13 QYVKLNVG-GSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWV-LIDRCGKHFGIILNFLRDGQVSLPENPKDVAELL 90 (531)
Q Consensus 13 ~~VkLNVG-G~lF~TT~sTLtk~dS~L~~mfs~r~~~~~D~~G~~-FIDRDP~~F~~ILNYLR~Gkl~LP~~~~el~eLl 90 (531)
--|+|.|+ |+.|..-+.-|+....+|.+||++.+.-. ....++ +-+=++..|+.||+|+-+|++ +. ..+..|+
T Consensus 26 ~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~-~~~~~v~l~~v~~~~~~~ll~y~Yt~~i--~~--~nv~~ll 100 (557)
T PHA02713 26 CDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIR-DLVTRVNLQMFDKDAVKNIVQYLYNRHI--SS--MNVIDVL 100 (557)
T ss_pred CCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhh-ccCceEEeccCCHHHHHHHHHHhcCCCC--CH--HHHHHHH
Confidence 35789998 89999999999999999999999865311 123445 445799999999999999984 33 3467899
Q ss_pred HHHHhcCcHHHHHHHHHHHHHh
Q psy1964 91 AEAKYYCITELTDLCEQTIKRK 112 (531)
Q Consensus 91 eEAeFY~L~~Lv~~ce~~l~~~ 112 (531)
.-|.+++|+.|++.|.+.|.+.
T Consensus 101 ~aA~~lqi~~l~~~C~~~l~~~ 122 (557)
T PHA02713 101 KCADYLLIDDLVTDCESYIKDY 122 (557)
T ss_pred HHHHHHCHHHHHHHHHHHHHhh
Confidence 9999999999999999888653
No 25
>KOG4441|consensus
Probab=95.05 E-value=0.038 Score=62.03 Aligned_cols=95 Identities=23% Similarity=0.331 Sum_probs=79.9
Q ss_pred eEEEEECCeEEEeeHhhhccCCCchhhhhcCCcccccCCCCc-EEEcCCCCChhhhhhccccceeecCCCchhHHHHHHH
Q psy1964 14 YVKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGW-VLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAE 92 (531)
Q Consensus 14 ~VkLNVGG~lF~TT~sTLtk~dS~L~~mfs~r~~~~~D~~G~-~FIDRDP~~F~~ILNYLR~Gkl~LP~~~~el~eLleE 92 (531)
-|.|-||++.|..-+--|+....+|.+||.+.+.- ..... -+.+=||..++.+++|.-+|++.+..+ .+++|++-
T Consensus 38 Dv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e--~~~~~i~l~~v~~~~l~~ll~y~Yt~~i~i~~~--nVq~ll~a 113 (571)
T KOG4441|consen 38 DVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKE--SKQKEINLEGVDPETLELLLDYAYTGKLEISED--NVQELLEA 113 (571)
T ss_pred eEEEEECCeeechHHHHHHhccHHHHHHhcCCccc--ccceEEEEecCCHHHHHHHHHHhhcceEEechH--hHHHHHHH
Confidence 58899999999999999999999999999985421 12233 355579999999999999999998865 36889999
Q ss_pred HHhcCcHHHHHHHHHHHHHh
Q psy1964 93 AKYYCITELTDLCEQTIKRK 112 (531)
Q Consensus 93 AeFY~L~~Lv~~ce~~l~~~ 112 (531)
|.+++|.++++.|.+-|.+.
T Consensus 114 A~~lQi~~v~~~C~~fL~~~ 133 (571)
T KOG4441|consen 114 ASLLQIPEVVDACCEFLESQ 133 (571)
T ss_pred HHHhhhHHHHHHHHHHHHhc
Confidence 99999999999999887653
No 26
>PHA03098 kelch-like protein; Provisional
Probab=94.66 E-value=0.033 Score=60.71 Aligned_cols=70 Identities=14% Similarity=0.252 Sum_probs=58.7
Q ss_pred CCchhhhhhcCCC-CCcEEEcCCCCChHHHHhccccCcccCCCChhhHHHHHHHHHccCcHHHHHHHHHhhhh
Q psy1964 315 RINALRCQRFGRM-EGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCITALCLNFSYFLLG 386 (531)
Q Consensus 315 ~dS~L~~MfSgr~-~G~iFIDRDp~~F~~ILNyLR~G~l~Lp~~~~~l~~Ll~EAeFY~L~~Lv~~~~~~l~~ 386 (531)
...+|++||++.+ +..+-+.=++..|..||+|+-+|++.+..+ +..+|+.=|.+|+++.|.+.|++.|..
T Consensus 33 ~S~yF~~mf~~~~~~~~i~l~~~~~~~~~~l~y~Ytg~~~i~~~--~~~~ll~~A~~l~~~~l~~~C~~~l~~ 103 (534)
T PHA03098 33 SSEYFKKMFKNNFKENEINLNIDYDSFNEVIKYIYTGKINITSN--NVKDILSIANYLIIDFLINLCINYIIK 103 (534)
T ss_pred hhHHHHHHHhCCCCCceEEecCCHHHHHHHHHHhcCCceEEcHH--HHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 4568999999987 455544339999999999999999988754 599999999999999999999887764
No 27
>PHA02790 Kelch-like protein; Provisional
Probab=94.35 E-value=0.038 Score=60.23 Aligned_cols=71 Identities=15% Similarity=0.136 Sum_probs=59.2
Q ss_pred CCchhhhhhcCCC---CCcEE-E--cCCCCChHHHHhccccCcccCCCChhhHHHHHHHHHccCcHHHHHHHHHhhhhc
Q psy1964 315 RINALRCQRFGRM---EGWVL-I--DRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCITALCLNFSYFLLGI 387 (531)
Q Consensus 315 ~dS~L~~MfSgr~---~G~iF-I--DRDp~~F~~ILNyLR~G~l~Lp~~~~~l~~Ll~EAeFY~L~~Lv~~~~~~l~~~ 387 (531)
-..+|++||++.+ +..+. + |=|+.-++.||+|+-+|++.+..+ ..+.|++=|.|+|++++++.|.+-|...
T Consensus 43 ~S~YFraMF~~~~~Es~~~v~~~~~~v~~~~l~~lldy~YTg~l~it~~--nV~~ll~aA~~Lqi~~v~~~C~~fL~~~ 119 (480)
T PHA02790 43 LSPYFRTHLRQKYTKNKDPVTRVCLDLDIHSLTSIVIYSYTGKVYIDSH--NVVNLLRASILTSVEFIIYTCINFILRD 119 (480)
T ss_pred cCHHHHHHhcCCccccccceEEEecCcCHHHHHHHHHhheeeeEEEecc--cHHHHHHHHHHhChHHHHHHHHHHHHhh
Confidence 4569999999987 23333 2 678888999999999999998765 5999999999999999999998877643
No 28
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=89.52 E-value=0.35 Score=40.91 Aligned_cols=70 Identities=21% Similarity=0.256 Sum_probs=55.9
Q ss_pred CCchhhhhhcCC-C--CC--cEEEc-CCCCChHHHHhccccCcccCCCChhhHHHHHHHHHccCcHHHHHHHHHhhh
Q psy1964 315 RINALRCQRFGR-M--EG--WVLID-RCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCITALCLNFSYFLL 385 (531)
Q Consensus 315 ~dS~L~~MfSgr-~--~G--~iFID-RDp~~F~~ILNyLR~G~l~Lp~~~~~l~~Ll~EAeFY~L~~Lv~~~~~~l~ 385 (531)
...+|+.||++. + .+ .+-++ =++..|..+|+|+=+|.+.++ +...+..+++=|++|+++.|.+.|+..|.
T Consensus 33 ~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~-~~~~~~~ll~lA~~~~~~~L~~~~~~~l~ 108 (111)
T PF00651_consen 33 RSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEIN-SDENVEELLELADKLQIPELKKACEKFLQ 108 (111)
T ss_dssp HBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE--TTTHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred cchhhhhcccccccccccccccccccccccccccccccccCCcccCC-HHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 467899999998 3 22 23223 468899999999999998777 23469999999999999999999998775
No 29
>PHA02713 hypothetical protein; Provisional
Probab=88.52 E-value=0.53 Score=52.62 Aligned_cols=69 Identities=17% Similarity=0.155 Sum_probs=56.5
Q ss_pred CCchhhhhhcCCCC-----CcE-EEcCCCCChHHHHhccccCcccCCCChhhHHHHHHHHHccCcHHHHHHHHHhhhhc
Q psy1964 315 RINALRCQRFGRME-----GWV-LIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCITALCLNFSYFLLGI 387 (531)
Q Consensus 315 ~dS~L~~MfSgr~~-----G~i-FIDRDp~~F~~ILNyLR~G~l~Lp~~~~~l~~Ll~EAeFY~L~~Lv~~~~~~l~~~ 387 (531)
...+|++||++.+. ..+ +-+=++..|..||+|+-+|.+ +. ...+.|+.=|.+++|+.|.+.|.+-|...
T Consensus 48 ~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~~i--~~--~nv~~ll~aA~~lqi~~l~~~C~~~l~~~ 122 (557)
T PHA02713 48 GSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNRHI--SS--MNVIDVLKCADYLLIDDLVTDCESYIKDY 122 (557)
T ss_pred cCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCCCC--CH--HHHHHHHHHHHHHCHHHHHHHHHHHHHhh
Confidence 46799999999762 335 445689999999999999984 32 46899999999999999999999887643
No 30
>KOG4441|consensus
Probab=85.00 E-value=0.83 Score=51.53 Aligned_cols=70 Identities=19% Similarity=0.235 Sum_probs=59.4
Q ss_pred CCchhhhhhcCCC----CCcE-EEcCCCCChHHHHhccccCcccCCCChhhHHHHHHHHHccCcHHHHHHHHHhhhh
Q psy1964 315 RINALRCQRFGRM----EGWV-LIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCITALCLNFSYFLLG 386 (531)
Q Consensus 315 ~dS~L~~MfSgr~----~G~i-FIDRDp~~F~~ILNyLR~G~l~Lp~~~~~l~~Ll~EAeFY~L~~Lv~~~~~~l~~ 386 (531)
-..+|++||++.+ +..+ +.+=||..+..+|+|.=+|.+.+..+ ..++|++=|.++||.++++.|.+-|..
T Consensus 58 ~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~i~i~~~--nVq~ll~aA~~lQi~~v~~~C~~fL~~ 132 (571)
T KOG4441|consen 58 CSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGKLEISED--NVQELLEAASLLQIPEVVDACCEFLES 132 (571)
T ss_pred ccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcceEEechH--hHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3679999999987 2333 55669999999999999999988765 699999999999999999998887764
No 31
>KOG3840|consensus
Probab=72.99 E-value=1.9 Score=45.67 Aligned_cols=61 Identities=18% Similarity=0.220 Sum_probs=46.0
Q ss_pred CCCCCchhhhhhcCCC-------CCcEEEcC--CCCChHHHHhccccCcccCCCChhhHHHHHHHHHccCc
Q psy1964 312 QSRRINALRCQRFGRM-------EGWVLIDR--CGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCI 373 (531)
Q Consensus 312 ~t~~dS~L~~MfSgr~-------~G~iFIDR--Dp~~F~~ILNyLR~G~l~Lp~~~~~l~~Ll~EAeFY~L 373 (531)
-.+++|||..||++.. .|.|-+.- ....|+.||+|...|.+-.|.+. .+.+|.+-.+|-.|
T Consensus 115 t~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~~v-SvpELrEACDYLli 184 (438)
T KOG3840|consen 115 TSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPSSV-SVSELREACDYLLV 184 (438)
T ss_pred cCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCCCC-chHHHHhhcceEEe
Confidence 3689999999999865 46664332 33579999999999999888775 77777666666544
No 32
>KOG4350|consensus
Probab=61.69 E-value=8.2 Score=42.59 Aligned_cols=107 Identities=16% Similarity=0.230 Sum_probs=79.8
Q ss_pred ccccCCCCceEEEEECCeEEEeeHhhhccCCCchhhhhcCCcccccCCCCcE-EEcCCCCChhhhhhccccceeecCCCc
Q psy1964 5 FIVSGNPCQYVKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWV-LIDRCGKHFGIILNFLRDGQVSLPENP 83 (531)
Q Consensus 5 ~~i~~~~~~~VkLNVGG~lF~TT~sTLtk~dS~L~~mfs~r~~~~~D~~G~~-FIDRDP~~F~~ILNYLR~Gkl~LP~~~ 83 (531)
....+..-.-|++-|..+.|..-+-.|+-..++|.+|+-|.+.-. .+..+ +=+-+...|+.+|.|+-+|++.+..-.
T Consensus 37 ~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es--~q~~ipLq~t~~eAF~~lLrYiYtg~~~l~~~~ 114 (620)
T KOG4350|consen 37 ELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQES--HQQLIPLQETNSEAFRALLRYIYTGKIDLAGVE 114 (620)
T ss_pred HHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhh--hhcccccccccHHHHHHHHHHHhhcceecccch
Confidence 344555666799999999999999999888899999998876311 11222 224467899999999999999886532
Q ss_pred h-hHHHHHHHHHhcCcHHHHHHHHHHHHHhc
Q psy1964 84 K-DVAELLAEAKYYCITELTDLCEQTIKRKQ 113 (531)
Q Consensus 84 ~-el~eLleEAeFY~L~~Lv~~ce~~l~~~e 113 (531)
. .+..++-=|.=|++..|...+.+.+.+.-
T Consensus 115 ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL 145 (620)
T KOG4350|consen 115 EDILLDYLSLAHRYGFIQLETAISEYLKEIL 145 (620)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 2 23457778999999999988888876543
No 33
>KOG1545|consensus
Probab=61.64 E-value=4.3 Score=44.06 Aligned_cols=47 Identities=23% Similarity=0.434 Sum_probs=39.8
Q ss_pred CCcEEEcCCCCChHHHHhccccC-cccCCCChhhHHHHHHHHHccCcHH
Q psy1964 328 EGWVLIDRCGKHFGIILNFLRDG-QVSLPENPKDVAELLAEAKYYCITA 375 (531)
Q Consensus 328 ~G~iFIDRDp~~F~~ILNyLR~G-~l~Lp~~~~~l~~Ll~EAeFY~L~~ 375 (531)
...||.||+-..|..||=|-..| .+-=|.+ ..+.-.++|-+||+|-+
T Consensus 101 rNEyFFDRnRpSFdaILYyYQSGGRlrRPvn-VPlDiF~eEirFyqlG~ 148 (507)
T KOG1545|consen 101 RNEYFFDRNRPSFDAILYYYQSGGRLRRPVN-VPLDIFLEEIRFYQLGD 148 (507)
T ss_pred chhhcccCCCCccceEEEEeecCceecCCcc-ccHHHHHHHHHHHHhhH
Confidence 68999999999999999999986 5555555 37889999999999954
No 34
>KOG0783|consensus
Probab=35.83 E-value=21 Score=42.65 Aligned_cols=93 Identities=17% Similarity=0.230 Sum_probs=63.7
Q ss_pred eEEEEECCeEEEeeHhhhccCCCchhhhhcCCccc-------ccCC---CCcEEEc-CCCCChhhhhhccccceeecC--
Q psy1964 14 YVKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEI-------LTDS---EGWVLID-RCGKHFGIILNFLRDGQVSLP-- 80 (531)
Q Consensus 14 ~VkLNVGG~lF~TT~sTLtk~dS~L~~mfs~r~~~-------~~D~---~G~~FID-RDP~~F~~ILNYLR~Gkl~LP-- 80 (531)
-|++.|||.+|..-+-.|+.+.++|..++...... ..+. .-.+|+| -.|.+|+++|+|+-+..+--|
T Consensus 560 DVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt~~~P~h 639 (1267)
T KOG0783|consen 560 DVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDTLLSPWH 639 (1267)
T ss_pred eEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhcccccCCcc
Confidence 48999999999999999999999999988754321 1122 2345565 589999999999988643333
Q ss_pred -------------CCch----hHHHHHHHHHhcCcHHHHHHHH
Q psy1964 81 -------------ENPK----DVAELLAEAKYYCITELTDLCE 106 (531)
Q Consensus 81 -------------~~~~----el~eLleEAeFY~L~~Lv~~ce 106 (531)
++.. .-+.|..-++=|.+.+|.....
T Consensus 640 eDdidci~fs~~k~N~~qrtrtCeMl~~~lekf~l~el~~~~~ 682 (1267)
T KOG0783|consen 640 EDDIDCIRFSPLKENLSQRTRTCEMLANLLEKFHLAELLPFSV 682 (1267)
T ss_pred ccchhhhhccccccChhhcccHHHHHHHHHhhhhHHhhhhhhh
Confidence 1111 1123666677777777765544
No 35
>PF11025 GP40: Glycoprotein GP40 of Cryptosporidium; InterPro: IPR021035 This entry represents proteins that are highly conserved in Cryptosporidium spp. Many members are annotated as being a 60 kDa glycoprotein.
Probab=28.15 E-value=50 Score=31.60 Aligned_cols=33 Identities=45% Similarity=0.817 Sum_probs=27.7
Q ss_pred CceeEeEE---ecCceeeeeEeee--eeEeecCcccee
Q psy1964 466 SEICCWSF---FGHGKKIAEVCCT--SIVYATDKKHTK 498 (531)
Q Consensus 466 ~eic~wsf---yg~g~k~aevcct--sivyat~kk~tk 498 (531)
.|-|-=|| ||+|--+|-.-|- -||||.+|-||-
T Consensus 5 keeCgtsFvmWf~~GtpvaTlkcg~YTiVyAP~k~~t~ 42 (165)
T PF11025_consen 5 KEECGTSFVMWFGEGTPVATLKCGDYTIVYAPEKDQTD 42 (165)
T ss_pred hhhcceeEEEEecCCcceEEEecCCEEEEEccccCCCC
Confidence 35666665 8999999999996 699999999885
No 36
>KOG4591|consensus
Probab=25.23 E-value=66 Score=32.82 Aligned_cols=55 Identities=18% Similarity=0.280 Sum_probs=47.7
Q ss_pred EEcCCCCChhhhhhccccceeecCCCchhHHHHHHHHHhcCcHHHHHHHHHHHHH
Q psy1964 57 LIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCITELTDLCEQTIKR 111 (531)
Q Consensus 57 FIDRDP~~F~~ILNYLR~Gkl~LP~~~~el~eLleEAeFY~L~~Lv~~ce~~l~~ 111 (531)
.=|-|++.|...+.|.-+..+.+..+..-+.++++=|.-|+++-|-+.|++-+..
T Consensus 110 ~dDad~Ea~~t~iRWIYTDEidfk~dD~~L~el~e~An~FqLe~Lke~C~k~l~a 164 (280)
T KOG4591|consen 110 LDDADFEAFHTAIRWIYTDEIDFKEDDEFLLELCELANRFQLELLKERCEKGLGA 164 (280)
T ss_pred ccccCHHHHHHhheeeeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4478999999999999999999877766678899999999999999999876643
No 37
>KOG4350|consensus
Probab=24.97 E-value=81 Score=35.20 Aligned_cols=73 Identities=22% Similarity=0.354 Sum_probs=53.3
Q ss_pred CCchhhhhhcCCC----CCcE-EEcCCCCChHHHHhccccCcccCCCC-hhhHHHHHHHHHccCcHHHHHHHHHhhhhc
Q psy1964 315 RINALRCQRFGRM----EGWV-LIDRCGKHFGIILNFLRDGQVSLPEN-PKDVAELLAEAKYYCITALCLNFSYFLLGI 387 (531)
Q Consensus 315 ~dS~L~~MfSgr~----~G~i-FIDRDp~~F~~ILNyLR~G~l~Lp~~-~~~l~~Ll~EAeFY~L~~Lv~~~~~~l~~~ 387 (531)
..++|++|+-|.| +..| +-+-+...|+.+|.|+=+|++.+..- ...+-..+-=|.=|++.+|..++.+-+++.
T Consensus 66 Rs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~i 144 (620)
T KOG4350|consen 66 RSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKIDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKEI 144 (620)
T ss_pred HHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcceecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 6799999999988 2222 44556788999999999999977642 223455666778888888877777666544
No 38
>KOG4682|consensus
Probab=22.90 E-value=55 Score=36.31 Aligned_cols=72 Identities=13% Similarity=0.078 Sum_probs=50.2
Q ss_pred CCCchhhhhhcCCC----CCcEEE-cCCC----CChHHHHhccccCcccCCCChhhHHHHHHHHHccCcHHHHHHHHHhh
Q psy1964 314 RRINALRCQRFGRM----EGWVLI-DRCG----KHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCITALCLNFSYFL 384 (531)
Q Consensus 314 ~~dS~L~~MfSgr~----~G~iFI-DRDp----~~F~~ILNyLR~G~l~Lp~~~~~l~~Ll~EAeFY~L~~Lv~~~~~~l 384 (531)
.+.-+|++||+|.| .+-|=+ =-|| ..|..+|.-|=..++-+. ...+.++++-|-+.++++|.+.|-+-+
T Consensus 89 ~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~--l~dv~gvlAaA~~lqldgl~qrC~evM 166 (488)
T KOG4682|consen 89 FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIK--LSDVVGVLAAACLLQLDGLIQRCGEVM 166 (488)
T ss_pred eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheecc--HHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34459999999998 122211 0122 346667666655566544 346899999999999999999999977
Q ss_pred hhc
Q psy1964 385 LGI 387 (531)
Q Consensus 385 ~~~ 387 (531)
.+.
T Consensus 167 ie~ 169 (488)
T KOG4682|consen 167 IET 169 (488)
T ss_pred HHh
Confidence 654
No 39
>KOG2075|consensus
Probab=20.86 E-value=1.1e+02 Score=34.57 Aligned_cols=69 Identities=25% Similarity=0.238 Sum_probs=52.9
Q ss_pred CCchhhhhhcCCCC----CcEE-EcCCCCChHHHHhccccCcccCCCChhhHHHHHHHHHccCcHHHHHHHHHhhh
Q psy1964 315 RINALRCQRFGRME----GWVL-IDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCITALCLNFSYFLL 385 (531)
Q Consensus 315 ~dS~L~~MfSgr~~----G~iF-IDRDp~~F~~ILNyLR~G~l~Lp~~~~~l~~Ll~EAeFY~L~~Lv~~~~~~l~ 385 (531)
-...|.+||+|.+. +.+- =|=+|..|...|.||=...+.+-.+ .+-.++.=|+=|.++.|.+.|=+.|+
T Consensus 141 gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl~~L~flYsdev~~~~d--tvi~tl~~AkKY~VpaLer~CVkflr 214 (521)
T KOG2075|consen 141 GSDVFDAMFYGGLAEDASLEIRLPDVEPAAFLAFLRFLYSDEVKLAAD--TVITTLYAAKKYLVPALERQCVKFLR 214 (521)
T ss_pred chHHHHHHhccCcccccCceeecCCcChhHhHHHHHHHhcchhhhhHH--HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 35678999999983 4443 3559999999999998877766543 47778888999999998887776665
Done!