RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1964
(531 letters)
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium
channel domain T1, pentameric assembly, HOST-virus
interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Length = 202
Score = 158 bits (402), Expect = 6e-46
Identities = 43/164 (26%), Positives = 81/164 (49%), Gaps = 8/164 (4%)
Query: 9 GNPCQYVKLNVGGSLHYTTIGTLTKH-DTMLRAMFSGRMEILT--DSEGWVLIDRCGKHF 65
G+ ++V+LNVGG+ TT TL + + L + ++ + D G LIDR +F
Sbjct: 8 GSVSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYF 67
Query: 66 GIILNFLRDGQVSLPENPKDVAELLAEAKYYCITELTDLCEQTIKRKQRETE--PICRVP 123
G +LN+LR G++ + ++ +L EA++Y IT L L + I+ + +T P+ V
Sbjct: 68 GPVLNYLRHGKLVINKD-LAEEGVLEEAEFYNITSLIKLVKDKIRERDSKTSQVPVKHVY 126
Query: 124 LITSLKEEQL--LLNATAKPVVKLLINRHNNKYSYTSTSDDNLL 165
+ +EE+L +++ + + + Y+Y + L
Sbjct: 127 RVLQCQEEELTQMVSTMSDGWKFEQLVSIGSSYNYGNEDQAEFL 170
Score = 66.1 bits (161), Expect = 1e-12
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 328 EGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCITAL 376
G LIDR +FG +LN+LR G++ + ++ +L EA++Y IT+L
Sbjct: 55 TGAYLIDRDPTYFGPVLNYLRHGKLVINKD-LAEEGVLEEAEFYNITSL 102
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain
T1, pentamer, unkno function; 1.90A {Homo sapiens}
Length = 107
Score = 130 bits (329), Expect = 1e-36
Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 8 SGNPCQYVKLNVGGSLHYTTIGTLTKH-DTMLRAMFSGRMEILT--DSEGWVLIDRCGKH 64
SG+ ++V+LNVGG+ TT TL + + L + ++ + D G LIDR +
Sbjct: 1 SGSVSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTY 60
Query: 65 FGIILNFLRDGQVSLPENPKDVAELLAEAKYYCITELTDLCEQTIKRK 112
FG +LN+LR G++ + ++ +L EA++Y IT L L + I+ +
Sbjct: 61 FGPVLNYLRHGKLVINKD-LAEEGVLEEAEFYNITSLIKLVKDKIRER 107
Score = 66.6 bits (163), Expect = 9e-14
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 328 EGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCITAL 376
G LIDR +FG +LN+LR G++ + ++ +L EA++Y IT+L
Sbjct: 49 TGAYLIDRDPTYFGPVLNYLRHGKLVINKD-LAEEGVLEEAEFYNITSL 96
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated
potassium channel SHAL, membrane protein; 2.10A {Rattus
norvegicus} SCOP: d.42.1.2
Length = 105
Score = 84.7 bits (210), Expect = 3e-20
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 6/106 (5%)
Query: 15 VKLNVGGSLHYTTIGTLTKH-DTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLR 73
+ LNV G+ T TL ++ DT+L + R DR F ILNF R
Sbjct: 2 IVLNVSGTRFQTWQDTLERYPDTLLGSSE--RDFFYHPETQQYFFDRDPDIFRHILNFYR 59
Query: 74 DGQVSLPENPKDVAELLAEAKYYCITE--LTDLCEQTIKRKQRETE 117
G++ P + + ++ E ++ + + D C + K ++RE
Sbjct: 60 TGKLHYPRH-ECISAYDEELAFFGLIPEIIGDCCYEEYKDRRRENA 104
Score = 49.3 bits (118), Expect = 1e-07
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 320 RCQRFGRMEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCI 373
R + DR F ILNF R G++ P + + ++ E ++ +
Sbjct: 31 RDFFYHPETQQYFFDRDPDIFRHILNFYRTGKLHYPRH-ECISAYDEELAFFGL 83
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels,
tetramerization domain, T1 domain, transport PR; 2.60A
{Homo sapiens} SCOP: d.42.1.2
Length = 124
Score = 85.2 bits (211), Expect = 5e-20
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 6/114 (5%)
Query: 8 SGNPCQYVKLNVGGSLHYTTIGTLTKH-DTMLRAMFSGRMEILTDSEGWVLIDRCGKHFG 66
+ + + LNV G T TL ++ DT+L + + + DR + F
Sbjct: 8 NKRQDELIVLNVSGRRFQTWRTTLERYPDTLLGSTE--KEFFFNEDTKEYFFDRDPEVFR 65
Query: 67 IILNFLRDGQVSLPENPKDVAELLAEAKYYCITE--LTDLCEQTIKRKQRETEP 118
+LNF R G++ P + ++ E +Y I + D C + K ++RE
Sbjct: 66 CVLNFYRTGKLHYPRY-ECISAYDDELAFYGILPEIIGDCCYEEYKDRKRENLE 118
Score = 47.8 bits (114), Expect = 5e-07
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 320 RCQRFGRMEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCITALCL 378
+ F DR + F +LNF R G++ P + ++ E +Y I +
Sbjct: 44 KEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGKLHYPRY-ECISAYDDELAFYGILPEII 101
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular
recogni zinc-binding; 2.00A {Aplysia californica} SCOP:
d.42.1.2
Length = 115
Score = 84.4 bits (209), Expect = 5e-20
Identities = 25/113 (22%), Positives = 40/113 (35%), Gaps = 5/113 (4%)
Query: 10 NPCQYVKLNVGGSLHYTTIGTLTKH-DTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGII 68
+ V +NVGG H T TL K T L + M DR F I
Sbjct: 2 DAENRVIINVGGIRHETYKATLKKIPATRLSRLTE-GMLNYDPVLNEYFFDRHPGVFAQI 60
Query: 69 LNFLRDGQVSLPENPKDVAELLAEAKYYCITE--LTDLCEQTIKRKQRETEPI 119
+N+ R G++ P + E +++ + + C T + E +
Sbjct: 61 INYYRSGKLHYPTDV-CGPLFEEELEFWGLDSNQVEPCCWMTYTAHRDTQETL 112
Score = 47.4 bits (113), Expect = 6e-07
Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 320 RCQRFGRMEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCI 373
+ + DR F I+N+ R G++ P + E +++ +
Sbjct: 37 GMLNYDPVLNEYFFDRHPGVFAQIINYYRSGKLHYPTDV-CGPLFEEELEFWGL 89
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1,
membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Length = 140
Score = 85.3 bits (211), Expect = 6e-20
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 6/113 (5%)
Query: 8 SGNPCQYVKLNVGGSLHYTTIGTLTKH-DTMLRAMFSGRMEILTDSEGWVLIDRCGKHFG 66
+ + + LNV G T TL ++ DT+L + + + DR + F
Sbjct: 30 NKRQDELIVLNVSGRRFQTWRTTLERYPDTLLGSTE--KEFFFNEDTKEYFFDRDPEVFR 87
Query: 67 IILNFLRDGQVSLPENPKDVAELLAEAKYYCITE--LTDLCEQTIKRKQRETE 117
+LNF R G++ P + ++ E +Y I + D C + K ++RE
Sbjct: 88 CVLNFYRTGKLHYPRY-ECISAYDDELAFYGILPEIIGDCCYEEYKDRKRENA 139
Score = 48.7 bits (116), Expect = 3e-07
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 320 RCQRFGRMEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCITALCL 378
+ F DR + F +LNF R G++ P + ++ E +Y I +
Sbjct: 66 KEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGKLHYPRY-ECISAYDDELAFYGILPEII 123
>1t1d_A Protein (potassium channel KV1.1); potassium channels,
tetramerization domain, aplysia KV1.1, proton transport,
membrane protein; 1.51A {Aplysia californica} SCOP:
d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E*
1qdw_A 1dsx_A
Length = 100
Score = 67.9 bits (166), Expect = 2e-14
Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 4/89 (4%)
Query: 15 VKLNVGGSLHYTTIGTLTK-HDTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLR 73
V +NV G T + TL + DT+L R DR F IL F +
Sbjct: 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQK-RNRYYDPLRNEYFFDRNRPSFDAILYFYQ 61
Query: 74 -DGQVSLPENPKDVAELLAEAKYYCITEL 101
G++ P N + E K+Y + E
Sbjct: 62 SGGRLRRPVNV-PLDVFSEEIKFYELGEN 89
Score = 42.4 bits (100), Expect = 2e-05
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 320 RCQRFGRMEGWVLIDRCGKHFGIILNFLR-DGQVSLPENPKDVAELLAEAKYYCITALCL 378
R + + + DR F IL F + G++ P N + E K+Y +
Sbjct: 33 RNRYYDPLRNEYFFDRNRPSFDAILYFYQSGGRLRRPVNV-PLDVFSEEIKFYELGENAF 91
Query: 379 N 379
Sbjct: 92 E 92
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.0 bits (137), Expect = 1e-08
Identities = 101/590 (17%), Positives = 174/590 (29%), Gaps = 214/590 (36%)
Query: 72 LRDG-QVSLPE---------NPKDVAELLAEAKYYCITELTDLCEQTIKRKQRETEPICR 121
L++ LPE P AEL+ K+ + ++ L E + K + + +
Sbjct: 33 LQEQFNKILPEPTEGFAADDEPTTPAELV--GKF--LGYVSSLVEPS---KVGQFDQV-- 83
Query: 122 VPLITSLKE-EQLLL---------------NATAKPVVKLLIN-----RHNNKYSYTSTS 160
L L E E L N T K LI R K + S
Sbjct: 84 --LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS 141
Query: 161 DDNLLKNIELFD-KLALRFSG-----------RLLF------IKDVIGSSEICCWS---- 198
+ L + + + +L F G R L+ + D+I S
Sbjct: 142 NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRT 201
Query: 199 ------FFGHGKKIAEVCCTSIVYATDKKHTKQSVWLKFLKINQSIFFFNHGVSRPG--Y 250
F G I E WL+ + + P Y
Sbjct: 202 TLDAEKVFTQGLNILE-------------------WLE------------NPSNTPDKDY 230
Query: 251 FGARPVVIRPF--------------VTGMRPYTFPAELMQATSTRG-----AVAGMSSYT 291
+ P+ P + G P ++ + AVA ++
Sbjct: 231 LLSIPISC-PLIGVIQLAHYVVTAKLLGFTPGEL-RSYLKGATGHSQGLVTAVA-IAETD 287
Query: 292 SDEEEERSGLARLRGILWRGQSRRINALRCQR-FGRMEGW--VLIDRCGKHFGI---ILN 345
S E S + + + G +RC + +L D + G+ +L+
Sbjct: 288 SWESFFVSVRKAITVLFFIG-------VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS 340
Query: 346 FLRDGQVSLPENPKDVAEL---LAEAKYYCITALCLN-FSYFLL-GIWHSKSTYWIKILQ 400
+ + ++ + V + L K I +L +N ++ G +S Y
Sbjct: 341 -ISN--LTQEQVQDYVNKTNSHLPAGKQVEI-SL-VNGAKNLVVSG--PPQSLY------ 387
Query: 401 FLGLELYF------SGTSHDVLPLGVSYR---FSGRLLFI---------KDVIGSRTSHD 442
GL L SG +P S R FS R L + + D
Sbjct: 388 --GLNLTLRKAKAPSGLDQSRIPF--SERKLKFSNRFLPVASPFHSHLLVPAS-DLINKD 442
Query: 443 VLPFGVSYRFSGRLLFI--------KDV-IGSSEICCWSFFGHGKKIAEVCCTSIVY--- 490
++ VS F+ + + I D+ + S I ++I + V
Sbjct: 443 LVKNNVS--FNAKDIQIPVYDTFDGSDLRVLSGSI--------SERIVDCIIRLPVKWET 492
Query: 491 ATDKKHTKV-EF-P---------EARIYEET-LNIILYEARNP-PDQELG 527
T K T + +F P R + T + +I+ + PD + G
Sbjct: 493 TTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYG 542
Score = 39.3 bits (91), Expect = 0.003
Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 25/112 (22%)
Query: 41 MFSGRMEILTDSEG----WVLIDRCGKHFGIILNFLRDGQVSLPE----NPKDVAELLAE 92
M G M++ S+ W +R HF F S+ + NP ++
Sbjct: 1631 M--G-MDLYKTSKAAQDVW---NRADNHFKDTYGF------SILDIVINNPVNLTIHFGG 1678
Query: 93 AKYYCITE-LTDLCEQTIKRKQRETEPICR--VPLITSL--KEEQLLLNATA 139
K I E + + +TI + +TE I + TS + E+ LL+AT
Sbjct: 1679 EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ 1730
Score = 35.0 bits (80), Expect = 0.073
Identities = 41/254 (16%), Positives = 86/254 (33%), Gaps = 78/254 (30%)
Query: 169 ELFDKLALRFSGRLLF-IKDVIGSSEICCWSFFG--HGKKIAEVCCTSIVYATDKKHTKQ 225
+++++ F F I D++ ++ + FG GK+I E +++++ T +
Sbjct: 1644 DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENY-SAMIFETIVDGKLK 1702
Query: 226 SVWLKFLKINQSI--FFFNHGVSRPGYFGARPVVIRP----FVTGMRPYTFPA------- 272
+ + F +IN+ + F T +T PA
Sbjct: 1703 TEKI-FKEINEHSTSYTFRS----------------EKGLLSAT---QFTQPALTLMEKA 1742
Query: 273 --ELMQATSTRG------AVAGMS--SYT---------SDEEEERSGLARLRGILW---- 309
E +++ +G AG S Y S E + RG+
Sbjct: 1743 AFEDLKS---KGLIPADATFAGHSLGEYAALASLADVMSIESLVE--VVFYRGMTMQVAV 1797
Query: 310 -RGQSRRIN----ALRCQR----FGRMEGWVLIDRCGKHFGIIL---NF-LRDGQVSLPE 356
R + R N A+ R F + +++R GK G ++ N+ + + Q
Sbjct: 1798 PRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAG 1857
Query: 357 NPKDVAELLAEAKY 370
+ + + + +
Sbjct: 1858 DLRALDTVTNVLNF 1871
Score = 32.3 bits (73), Expect = 0.53
Identities = 26/123 (21%), Positives = 39/123 (31%), Gaps = 43/123 (34%)
Query: 4 NFIVSGNPCQYVKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLIDRCGK 63
N +VSG P LN L + D R FS R K
Sbjct: 376 NLVVSGPPQSLYGLN----LTLRKAKAPSGLDQS-RIPFSER-----------------K 413
Query: 64 -HFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCITEL--TDLCEQTIKRKQRETEPIC 120
F FL V+ P + + LL A ++L DL + + ++
Sbjct: 414 LKFS--NRFLP---VASPFH----SHLLVPA-----SDLINKDLVKNNVSFNAKD----I 455
Query: 121 RVP 123
++P
Sbjct: 456 QIP 458
Score = 28.9 bits (64), Expect = 6.1
Identities = 68/425 (16%), Positives = 108/425 (25%), Gaps = 186/425 (43%)
Query: 9 GNPCQYVK-LNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLIDRCGKHF-- 65
GN Y + L L Y T L D + + + + L + K F
Sbjct: 164 GNTDDYFEELR---DL-YQTYHVLVG-DLIKFS--AETLSELIRTT-----LDAEKVFTQ 211
Query: 66 GI-ILNFLRDGQ------------VSLP------------------ENPKD--------- 85
G+ IL +L + +S P P +
Sbjct: 212 GLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT 271
Query: 86 -------VAELLAEAKYYCITELTDLCEQTIK-------RKQRETEPICRVPL------- 124
A +AE + I R E P +P
Sbjct: 272 GHSQGLVTAVAIAETD--SWESFFVSVRKAITVLFFIGVRCY-EAYPNTSLPPSILEDSL 328
Query: 125 ------------ITSLKEEQLL-----LNATAKPVVKL---LINRHNN------------ 152
I++L +EQ+ N+ ++ L+N N
Sbjct: 329 ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG 388
Query: 153 ------KYSYTSTSDDNLLKNIELFDKLALRFSGRLLFI-----------------KDVI 189
K S D + I F + L+FS R L + KD++
Sbjct: 389 LNLTLRKAKAPSGLDQS---RIP-FSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLV 444
Query: 190 GSSEICCWSFFGHGKKIAEVCCTSIVYAT----DKKHTKQSV--------------WLKF 231
++ SF +I VY T D + S+ W
Sbjct: 445 KNN----VSFNAKDIQIP-------VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETT 493
Query: 232 LKINQSIFFFNHGVSRPGYFGARPVVIRP-FVTGMRPYTFPAELMQATSTRGAVAGMSSY 290
+ + H + FG P +G+ T T R VAG
Sbjct: 494 TQFKAT-----HILD----FG-------PGGASGLGVLT--HRNKDGTGVRVIVAGTLDI 535
Query: 291 TSDEE 295
D++
Sbjct: 536 NPDDD 540
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 0.002
Identities = 66/563 (11%), Positives = 137/563 (24%), Gaps = 181/563 (32%)
Query: 10 NPCQYVKLN-VGGSLHYTTIG--TLTKH---DTMLRAMFSGRMEILTDSEGWVLIDRCGK 63
P + V ++ V GS G + ++ ++ W+ + C
Sbjct: 148 RPAKNVLIDGVLGS------GKTWVALDVCLSYKVQCKMDFKIF-------WLNLKNCNS 194
Query: 64 HFGIILNFLR-------------DGQVSLPENPKDVAE----LLAEAKY-YCITELTDLC 105
++ + D ++ + LL Y C+ L ++
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 106 EQTIKRK---QRETEPICRVPLITSLKEEQLLLNATAKPVVKLLINRHNNKYSYTSTSDD 162
C++ L T K+ L+A + L + +S T T D+
Sbjct: 255 NAKAWNAFNLS------CKILLTTRFKQVTDFLSAATTTHISL------DHHSMTLTPDE 302
Query: 163 N---LLKNIEL-FDKLALRFSGRLLFIKDVIGSS---EICCWSFFGHGKKIAEVCCTSIV 215
LLK ++ L +I S + W + H
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH------------- 349
Query: 216 YATDKKHTKQSVWLKFLKIN------QSIFFFNHGVSRPGYFGARPVVIRPFVTGMRPYT 269
DK T L L+ + F I
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH-----------I----------- 387
Query: 270 FPAELMQATSTRGAVAGMSSYTSDEEEERSGLARLRGILWRGQSRRINAL---RCQRFGR 326
P L+ ++W + + + ++
Sbjct: 388 -PTILLS------------------------------LIWFDVIKSDVMVVVNKLHKYS- 415
Query: 327 MEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAEL---LAEAKYYCITALCLN---- 379
L+++ K I + + L ++ L + + Y +
Sbjct: 416 -----LVEKQPKESTI---SIPSIYLELKVKLENEYALHRSIVD-HYNIPKTFDSDDLIP 466
Query: 380 ---FSYFLLGIWHSKSTYWIKILQFLGLELYFSGTSH--DVLP-LGVSYRFSGRLLFIKD 433
YF Y +G L + + + +RF + + D
Sbjct: 467 PYLDQYF----------YS-----HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI-RHD 510
Query: 434 VIGSRTSHDVLPFGVSYRFSGRLLFIKDVIGSSEICCWSFF--GHGKKIAEVCCTSIVYA 491
S +L +F + D + F + + T ++
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL-- 568
Query: 492 TDKKHTKVEFPEARIYEETLNII 514
+ + I+EE +
Sbjct: 569 ----RIALMAEDEAIFEEAHKQV 587
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL
conjugation pathway, protein binding, ligase; 2.62A
{Homo sapiens} PDB: 3hu6_A
Length = 312
Score = 38.3 bits (89), Expect = 0.005
Identities = 25/104 (24%), Positives = 34/104 (32%), Gaps = 17/104 (16%)
Query: 15 VKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRME-------ILTDSEGWVLIDRCGKHFGI 67
L V G L + AMF ME + D E V F
Sbjct: 177 CCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEV--------FKE 228
Query: 68 ILNFLRDGQVSLPENPKDVAELLAEAKYYCITELTDLCEQTIKR 111
++ F+ G P K +LLA A Y + L +CE +
Sbjct: 229 MMCFIYTG--KAPNLDKMADDLLAAADKYALERLKVMCEDALCS 270
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor,
voltage dependent, ION CH shaker, membrane protein,
eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB:
3lnm_B* 3lut_B* 2a79_B*
Length = 514
Score = 38.5 bits (89), Expect = 0.006
Identities = 26/116 (22%), Positives = 42/116 (36%), Gaps = 8/116 (6%)
Query: 7 VSGNPCQYVKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLIDRCGKHFG 66
+ V +N+ G T + TL + L RM DR F
Sbjct: 46 ADHESSERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFD 105
Query: 67 IILNFLR-DGQVSLPEN-PKDVAELLAEAKYYCITE--LTDLCEQ--TIKRKQRET 116
IL + + G++ P N P D+ E ++Y + E + E IK ++R
Sbjct: 106 AILYYYQSGGRLRRPVNVPLDI--FSEEIRFYELGEEAMEMFREDEGYIKEEERPL 159
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein
binding; 2.40A {Homo sapiens}
Length = 145
Score = 36.0 bits (84), Expect = 0.008
Identities = 21/80 (26%), Positives = 29/80 (36%), Gaps = 17/80 (21%)
Query: 39 RAMFSGRME-------ILTDSEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLA 91
AMF ME + D E V F ++ F+ G P K +LLA
Sbjct: 52 SAMFEHEMEESKKNRVEINDVEPEV--------FKEMMCFIYTG--KAPNLDKMADDLLA 101
Query: 92 EAKYYCITELTDLCEQTIKR 111
A Y + L +CE +
Sbjct: 102 AADKYALERLKVMCEDALCS 121
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo
sapiens} PDB: 3m52_A
Length = 119
Score = 35.3 bits (82), Expect = 0.010
Identities = 13/76 (17%), Positives = 34/76 (44%), Gaps = 16/76 (21%)
Query: 39 RAMFSGRMEILT----DSEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAK 94
+ +F + +++ ++ G G +L F+ ++SL +P++V ++LA A
Sbjct: 54 KMLFVDQKDVVHLDISNAAG----------LGQVLEFMYTAKLSL--SPENVDDVLAVAT 101
Query: 95 YYCITELTDLCEQTIK 110
+ + ++ C
Sbjct: 102 FLQMQDIITACHALKS 117
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus,
UBL conjugation pathway, protein binding; 2.50A {Homo
sapiens}
Length = 172
Score = 36.1 bits (84), Expect = 0.010
Identities = 21/80 (26%), Positives = 29/80 (36%), Gaps = 17/80 (21%)
Query: 39 RAMFSGRME-------ILTDSEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLA 91
AMF ME + D E V F ++ F+ G P K +LLA
Sbjct: 61 SAMFEHEMEESKKNRVEINDVEPEV--------FKEMMCFIYTG--KAPNLDKMADDLLA 110
Query: 92 EAKYYCITELTDLCEQTIKR 111
A Y + L +CE +
Sbjct: 111 AADKYALERLKVMCEDALCS 130
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo
sapiens}
Length = 109
Score = 34.9 bits (81), Expect = 0.013
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 6/75 (8%)
Query: 39 RAMFSGRMEILTDSEGWVLI-DRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYC 97
AMF G + + + + I D F I+L ++ ++ L V L AK Y
Sbjct: 39 YAMFYGDLA---EVKSEIHIPDVEPAAFLILLKYMYSDEIDL--EADTVLATLYAAKKYI 93
Query: 98 ITELTDLCEQTIKRK 112
+ L C ++
Sbjct: 94 VPALAKACVNFLETS 108
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond,
activator, DNA-binding, nucleus, phosphorylation,
repressor; 2.50A {Mus musculus}
Length = 138
Score = 34.9 bits (81), Expect = 0.017
Identities = 12/76 (15%), Positives = 29/76 (38%), Gaps = 6/76 (7%)
Query: 39 RAMFSGRMEILTDSEGWVLIDR-CGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYC 97
+ G+ + L + K F ++ F ++ L + +V E+ ++
Sbjct: 63 HSRIVGQTDAELTV---TLPEEVTVKGFEPLIQFAYTAKLIL--SKDNVDEVCRCVEFLS 117
Query: 98 ITELTDLCEQTIKRKQ 113
+ + + C Q +K K
Sbjct: 118 VHNIEESCFQFLKFKF 133
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding,
alternative splicing, zinc, nucleus, BTB domain,
zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Length = 116
Score = 34.1 bits (79), Expect = 0.024
Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 39 RAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCI 98
A++ E ++ F +L F+ G ++L + +V E+ A Y +
Sbjct: 49 GAIYRSTSE---NNVFLDQSQVKADGFQKLLEFIYTGTLNL--DSWNVKEIHQAADYLKV 103
Query: 99 TELTDLCEQTIK 110
E+ C+ ++
Sbjct: 104 EEVVTKCKIKME 115
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3,
structural genomics, NPPSFA; 2.60A {Mus musculus}
Length = 135
Score = 33.8 bits (78), Expect = 0.042
Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 39 RAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCI 98
+ ++ VL + FG++L+F G ++L + ++L AK +
Sbjct: 52 QRIYGDGT-----GGSVVLPAGFAEIFGLLLDFFYTGHLAL--TSGNRDQVLLAAKELRV 104
Query: 99 TELTDLCEQTIKR 111
E +LC+ +
Sbjct: 105 PEAVELCQSFQPQ 117
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote;
protein-protein interaction domain, transcriptional
represso finger protein; 1.90A {Homo sapiens} SCOP:
d.42.1.1 PDB: 1cs3_A
Length = 121
Score = 33.3 bits (77), Expect = 0.046
Identities = 12/76 (15%), Positives = 25/76 (32%), Gaps = 16/76 (21%)
Query: 39 RAMFSGRMEILT----DSEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAK 94
+F + T + F IL + + +D+ +LL A+
Sbjct: 55 EILFHRNSQHYTLDFLSPKT----------FQQILEYAYTATLQA--KAEDLDDLLYAAE 102
Query: 95 YYCITELTDLCEQTIK 110
I L + C + ++
Sbjct: 103 ILEIEYLEEQCLKMLE 118
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related
zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene;
1.74A {Homo sapiens}
Length = 119
Score = 32.6 bits (75), Expect = 0.076
Identities = 13/73 (17%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 39 RAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCI 98
++++ VL + FG++L+F G ++L + ++L A+ +
Sbjct: 51 QSLYGDGS-----GGSVVLPAGFAEIFGLLLDFFYTGHLAL--TSGNRDQVLLAARELRV 103
Query: 99 TELTDLCEQTIKR 111
E +LC+ +
Sbjct: 104 PEAVELCQSFKPK 116
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression,
transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB:
1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Length = 127
Score = 32.6 bits (75), Expect = 0.094
Identities = 14/76 (18%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 39 RAMFSGRMEILTDSEGWVLI-DRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYC 97
++F+ +++ L + + F I+L+F+ +++L ++ ++A A Y
Sbjct: 56 YSIFTDQLKRNLSVI--NLDPEINPEGFNILLDFMYTSRLNL--REGNIMAVMATAMYLQ 111
Query: 98 ITELTDLCEQTIKRKQ 113
+ + D C + IK +
Sbjct: 112 MEHVVDTCRKFIKASE 127
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC
domain,transcription factor, protein-PROT interaction;
2.44A {Homo sapiens}
Length = 124
Score = 32.2 bits (74), Expect = 0.11
Identities = 11/73 (15%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 39 RAMFSGRMEILTDSEGWVLIDR-CGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYC 97
+ G+ + + L + K F ++ F ++ L + ++V E+ ++
Sbjct: 56 HSRIVGQADGELNI---TLPEEVTVKGFEPLIQFAYTAKLIL--SKENVDEVCKCVEFLS 110
Query: 98 ITELTDLCEQTIK 110
+ + + C Q +K
Sbjct: 111 VHNIEESCFQFLK 123
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo
sapiens} PDB: 3ohv_A
Length = 125
Score = 32.2 bits (74), Expect = 0.14
Identities = 12/69 (17%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 39 RAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCI 98
G+ + D + + + FG +L F ++ L + +++ E++ A++ +
Sbjct: 59 WQALVGQTK--NDLVVSLPEEVTARGFGPLLQFAYTAKLLL--SRENIREVIRCAEFLRM 114
Query: 99 TELTDLCEQ 107
L D C
Sbjct: 115 HNLEDSCFS 123
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain,
phosphoprotein, repressor, transcri transcription
regulation; 2.10A {Homo sapiens}
Length = 129
Score = 31.9 bits (73), Expect = 0.16
Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 8/74 (10%)
Query: 39 RAMFS-GRMEILTDSEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYC 97
R +F+ R ++ + F IL+F G++S+ N D L+ A +
Sbjct: 60 RDLFNNSRSAVVELPAA---VQPQS--FQQILSFCYTGRLSM--NVGDQDLLMYTAGFLQ 112
Query: 98 ITELTDLCEQTIKR 111
I E+ + + +
Sbjct: 113 IQEIMEKGTEFFLK 126
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK,
proto oncogene, transcription F transcription; 2.00A
{Homo sapiens} PDB: 2nn2_A
Length = 120
Score = 30.2 bits (69), Expect = 0.54
Identities = 9/70 (12%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 39 RAMFSGRMEILTDSEGWVLIDR-CGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYC 97
+ +F+ + + ID + +++F +++ + +V ++L+ A+
Sbjct: 52 KKLFTSGAVVDQQNV--YEIDFVSAEALTALMDFAYTATLTV--STANVGDILSAARLLE 107
Query: 98 ITELTDLCEQ 107
I ++ +C
Sbjct: 108 IPAVSHVCAD 117
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation,
kelch repeat, neurodegeneration, phosphoprotein,
polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB:
3hve_B
Length = 256
Score = 30.6 bits (70), Expect = 0.95
Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 39 RAMFSGRMEILTDSEGWVLI-DRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYC 97
R + S + + IL+++ GQ+ L N + +++ A
Sbjct: 58 RTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRL--NEDTIQDVVQAADLLL 115
Query: 98 ITELTDLCEQ 107
+T+L LC +
Sbjct: 116 LTDLKTLCCE 125
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC,
structural genomics consortium, kelch repeat, secreted,
protein binding; 2.60A {Homo sapiens}
Length = 279
Score = 30.7 bits (70), Expect = 1.0
Identities = 9/76 (11%), Positives = 26/76 (34%), Gaps = 11/76 (14%)
Query: 39 RAMFSGRME-------ILTDSEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLA 91
+ SG+ + + ++ ++ G++ + + V E+L
Sbjct: 62 TPLLSGQFSESRSGRVEMRKWSSEPGPEPDT--VEAVIEYMYTGRIRV--STGSVHEVLE 117
Query: 92 EAKYYCITELTDLCEQ 107
A + + L + C +
Sbjct: 118 LADRFLLIRLKEFCGE 133
>2ab5_A MRNA maturase; laglidadg endonuclease, group I intron splicing, RNA
binding, protein binding; 2.20A {Saccharomyces
cerevisiae}
Length = 269
Score = 28.9 bits (64), Expect = 4.6
Identities = 7/64 (10%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 127 SLKEEQLLLNATAK--PVVKLLINRHNNKYSYTSTSDDNLLKNIELFDKLALRFSG--RL 182
S+ ++ A + + N T+ S +++ + + ++ G +L
Sbjct: 185 SMNNNMEVMLAIKSYLKINNNIYMNEFNNSKMTTKSINDIKNVVMFINNNPIKLLGYKKL 244
Query: 183 LFIK 186
++
Sbjct: 245 QYLL 248
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain,
BTB/POZ domain, ZBTB32, zinc finger domain-containing
protein 32; 2.00A {Homo sapiens}
Length = 119
Score = 27.6 bits (62), Expect = 4.9
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 65 FGIILNFLRDGQVSLPENPKDVAELLAEAKYYCITELTDLCEQTIKRK 112
F +LNF+ V L P ++ L A+ + L + C + +
Sbjct: 73 FAQLLNFVYGESVEL--QPGELRPLQEAARALGVQSLEEACWRARGDR 118
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain
containing 33, kaiso transcriptio ZNF-kaiso,
ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB:
3m4t_A 3m8v_A
Length = 116
Score = 26.9 bits (60), Expect = 8.6
Identities = 10/70 (14%), Positives = 24/70 (34%), Gaps = 15/70 (21%)
Query: 39 RAMFSGRMEILT----DSEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAK 94
+FS +++ +E F ILN++ ++ + EL+ +
Sbjct: 58 HQLFSVAGQVVELSFIRAEI----------FAEILNYIYSSKIVRV-RSDLLDELIKSGQ 106
Query: 95 YYCITELTDL 104
+ + L
Sbjct: 107 LLGVKFIAAL 116
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.140 0.434
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,397,550
Number of extensions: 521821
Number of successful extensions: 1340
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1308
Number of HSP's successfully gapped: 49
Length of query: 531
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 433
Effective length of database: 3,965,535
Effective search space: 1717076655
Effective search space used: 1717076655
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 60 (26.7 bits)