RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1964
(531 letters)
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare
(Aplysia californica) [TaxId: 6500]}
Length = 100
Score = 88.7 bits (220), Expect = 4e-22
Identities = 22/88 (25%), Positives = 30/88 (34%), Gaps = 2/88 (2%)
Query: 15 VKLNVGGSLHYTTIGTLTKH-DTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLR 73
V +NV G T + TL + DT+L R DR F IL F +
Sbjct: 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQK-RNRYYDPLRNEYFFDRNRPSFDAILYFYQ 61
Query: 74 DGQVSLPENPKDVAELLAEAKYYCITEL 101
G + E K+Y + E
Sbjct: 62 SGGRLRRPVNVPLDVFSEEIKFYELGEN 89
Score = 56.8 bits (137), Expect = 7e-11
Identities = 11/60 (18%), Positives = 18/60 (30%)
Query: 320 RCQRFGRMEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCITALCLN 379
R + + + DR F IL F + G + E K+Y +
Sbjct: 33 RNRYYDPLRNEYFFDRNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEEIKFYELGENAFE 92
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 105
Score = 88.4 bits (219), Expect = 6e-22
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 6/106 (5%)
Query: 15 VKLNVGGSLHYTTIGTLTKH-DTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLR 73
+ LNV G+ T TL ++ DT+L + R DR F ILNF R
Sbjct: 2 IVLNVSGTRFQTWQDTLERYPDTLLGSSE--RDFFYHPETQQYFFDRDPDIFRHILNFYR 59
Query: 74 DGQVSLPENPKDVAELLAEAKYYCITE--LTDLCEQTIKRKQRETE 117
G++ P + ++ E ++ + + D C + K ++RE
Sbjct: 60 TGKLHYPRHE-CISAYDEELAFFGLIPEIIGDCCYEEYKDRRRENA 104
Score = 50.3 bits (120), Expect = 1e-08
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 2/75 (2%)
Query: 305 RGILWRGQSRRINALRCQRFGRME-GWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAE 363
+ L R + + F E DR F ILNF R G++ P + ++
Sbjct: 15 QDTLERYPDTLLGSSERDFFYHPETQQYFFDRDPDIFRHILNFYRTGKLHYPRHE-CISA 73
Query: 364 LLAEAKYYCITALCL 378
E ++ + +
Sbjct: 74 YDEELAFFGLIPEII 88
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel
{California sea hare (Aplysia californica) [TaxId:
6500]}
Length = 103
Score = 78.8 bits (194), Expect = 2e-18
Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 2/92 (2%)
Query: 15 VKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLRD 74
V +NVGG H T TL K + + M DR F I+N+ R
Sbjct: 4 VIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFDRHPGVFAQIINYYRS 63
Query: 75 GQVSLPENPKDVAELLAEAKYYCITE-LTDLC 105
G++ P + E +++ + + C
Sbjct: 64 GKLHYPTDV-CGPLFEEELEFWGLDSNQVEPC 94
Score = 47.6 bits (113), Expect = 1e-07
Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 320 RCQRFGRMEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCI 373
+ + DR F I+N+ R G++ P + E +++ +
Sbjct: 34 GMLNYDPVLNEYFFDRHPGVFAQIINYYRSGKLHYPTDV-CGPLFEEELEFWGL 86
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF)
protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 121
Score = 36.5 bits (84), Expect = 0.001
Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 3/78 (3%)
Query: 34 HDTMLRAMFSGRMEILTDSEGWVLI-DRCGKHFGIILNFLRDGQVSLPENPKDVAELLAE 92
H T+L + + + K F IL + + +D+ +LL
Sbjct: 43 HRTVLACTSKMFEILFHRNSQHYTLDFLSPKTFQQILEYAYTATL--QAKAEDLDDLLYA 100
Query: 93 AKYYCITELTDLCEQTIK 110
A+ I L + C + ++
Sbjct: 101 AEILEIEYLEEQCLKMLE 118
>d1mi8a_ b.86.1.2 (A:) DnaB intein {Synechocystis sp. pcc 6803
[TaxId: 1148]}
Length = 158
Score = 27.5 bits (60), Expect = 3.1
Identities = 10/63 (15%), Positives = 22/63 (34%)
Query: 454 GRLLFIKDVIGSSEICCWSFFGHGKKIAEVCCTSIVYATDKKHTKVEFPEARIYEETLNI 513
G+ + IKD++ + W+ K+ + + K ++ R + T N
Sbjct: 16 GKRVSIKDLLDEKDFEIWAINEQTMKLESAKVSRVFMTGKKLVYILKTRLGRTIKATANH 75
Query: 514 ILY 516
Sbjct: 76 RFL 78
>d2q3za4 d.3.1.4 (A:146-461) Transglutaminase catalytic domain
{Human (Homo sapiens), tissue isozyme [TaxId: 9606]}
Length = 316
Score = 27.5 bits (61), Expect = 3.6
Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 306 GILWRGQSRRINALRCQRFGRMEGWVLIDRCGKHFGIILNFLRDGQVSLPE--NPKDVAE 363
G +++G ++ I FG+ + +L D C + FL++ +P V
Sbjct: 20 GFIYQGSAKFIKN-IPWNFGQFQDGIL-DICLILLDVNPKFLKNAGRDCSRRSSPVYVGR 77
Query: 364 LLA 366
+ +
Sbjct: 78 VGS 80
>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga
maritima [TaxId: 2336]}
Length = 162
Score = 26.6 bits (58), Expect = 6.2
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Query: 323 RFGRMEGWVLIDRCGKHFGII-LNFLRDGQVSLPENPKDVAELLAEAKYYCITALCLNFS 381
R G ++G + +G+I G S + E + A +NF+
Sbjct: 80 RPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTSNATIVNFT 139
>d1smyc_ e.29.1.1 (C:) RNA-polymerase beta {Thermus thermophilus
[TaxId: 274]}
Length = 1119
Score = 27.0 bits (59), Expect = 7.4
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 322 QRFGRMEGWVLI 333
QRFG ME W L
Sbjct: 1030 QRFGEMEVWALE 1041
>d1twfb_ e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 1207
Score = 26.8 bits (58), Expect = 8.3
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 322 QRFGRMEGWVLI 333
RFG ME +I
Sbjct: 1111 LRFGEMERDCMI 1122
>d2uubc2 d.53.1.1 (C:107-207) Ribosomal protein S3 C-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 101
Score = 25.2 bits (55), Expect = 8.8
Identities = 8/43 (18%), Positives = 13/43 (30%)
Query: 185 IKDVIGSSEICCWSFFGHGKKIAEVCCTSIVYATDKKHTKQSV 227
+ IG +E + G+ +I Y T V
Sbjct: 47 VSGRIGGAEQARTEWAAQGRVPLHTLRANIDYGFALARTTYGV 89
>d1l1da_ b.88.1.3 (A:) C-terminal MsrB domain of peptide methionine
sulfoxide reductase PilB {Neisseria gonorrhoeae [TaxId:
485]}
Length = 144
Score = 25.7 bits (56), Expect = 9.0
Identities = 10/46 (21%), Positives = 12/46 (26%), Gaps = 15/46 (32%)
Query: 335 RCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCITALCLNF 380
H G + DG P + YCI L F
Sbjct: 96 AADSHLGHVFP---DG----PRDKGG--------LRYCINGASLKF 126
>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA
{Bacillus subtilis [TaxId: 1423]}
Length = 167
Score = 25.7 bits (56), Expect = 9.7
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 323 RFGRMEGWVLIDRCGKHFGII--LNFLRDGQVSLPENPKDVAELLAEAKYYCITALCLNF 380
R G+ L ++ +G++ G + V E+L + Y A LN+
Sbjct: 86 RVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNY 145
Query: 381 S 381
S
Sbjct: 146 S 146
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.140 0.434
Gapped
Lambda K H
0.267 0.0599 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,082,961
Number of extensions: 100447
Number of successful extensions: 336
Number of sequences better than 10.0: 1
Number of HSP's gapped: 331
Number of HSP's successfully gapped: 17
Length of query: 531
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 441
Effective length of database: 1,171,896
Effective search space: 516806136
Effective search space used: 516806136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.2 bits)