BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1966
(59 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8N2A8|PLD6_HUMAN Mitochondrial cardiolipin hydrolase OS=Homo sapiens GN=PLD6 PE=1
SV=1
Length = 252
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/46 (52%), Positives = 31/46 (67%)
Query: 8 IPVRLTGPPYIMHHKFVLIDSSLVLQGSMNWTTQACSGNYENVVIT 53
I VR P MHHKF ++D +++ GS+NWTTQA N ENV+IT
Sbjct: 144 IQVRHDQDPGYMHHKFAIVDKRVLITGSLNWTTQAIQNNRENVLIT 189
>sp|A8IW99|PLD6_CHLRE Mitochondrial cardiolipin hydrolase OS=Chlamydomonas reinhardtii
GN=CHLREDRAFT_190403 PE=3 SV=1
Length = 223
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%)
Query: 5 QLNIPVRLTGPPYIMHHKFVLIDSSLVLQGSMNWTTQACSGNYENVVITGTP 56
Q I VR MHHKF +ID L+L GS NWT QA + N ENV + P
Sbjct: 154 QAGIAVRQDKTAAHMHHKFAIIDGRLLLNGSFNWTRQAVTANNENVTVLSDP 205
>sp|Q28DT3|PLD6_XENTR Mitochondrial cardiolipin hydrolase OS=Xenopus tropicalis GN=pld6
PE=2 SV=2
Length = 210
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/35 (57%), Positives = 27/35 (77%)
Query: 19 MHHKFVLIDSSLVLQGSMNWTTQACSGNYENVVIT 53
MHHKF ++D ++VL GS+NWT QA N EN++IT
Sbjct: 142 MHHKFAVVDGTVVLTGSLNWTVQATQTNRENILIT 176
>sp|A1L1C2|PLD6_XENLA Mitochondrial cardiolipin hydrolase OS=Xenopus laevis GN=pld6 PE=2
SV=1
Length = 210
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/35 (57%), Positives = 27/35 (77%)
Query: 19 MHHKFVLIDSSLVLQGSMNWTTQACSGNYENVVIT 53
MHHKF ++D ++VL GS+NWT QA N EN++IT
Sbjct: 142 MHHKFAVVDGTVVLTGSLNWTVQAFQSNKENILIT 176
>sp|E1BE10|PLD6_BOVIN Mitochondrial cardiolipin hydrolase OS=Bos taurus GN=PLD6 PE=3 SV=1
Length = 220
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 19 MHHKFVLIDSSLVLQGSMNWTTQACSGNYENVVI 52
MHHKF ++D +++ GS+NWTTQA N ENV+I
Sbjct: 151 MHHKFAIVDRKVLITGSLNWTTQAIQNNRENVLI 184
>sp|Q5SWZ9|PLD6_MOUSE Mitochondrial cardiolipin hydrolase OS=Mus musculus GN=Pld6 PE=1
SV=1
Length = 221
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 19 MHHKFVLIDSSLVLQGSMNWTTQACSGNYENVVI 52
MHHKF ++D +++ GS+NWTTQA N ENV+I
Sbjct: 152 MHHKFAIVDKKVLITGSLNWTTQAIQNNRENVLI 185
>sp|E2RD63|PLD6_CANFA Mitochondrial cardiolipin hydrolase OS=Canis familiaris GN=PLD6
PE=3 SV=1
Length = 254
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 19 MHHKFVLIDSSLVLQGSMNWTTQACSGNYENVVI 52
MHHKF ++D +++ GS+NWTTQA N ENV+I
Sbjct: 159 MHHKFAIVDKKVLITGSLNWTTQAIQNNRENVLI 192
>sp|A3KNW0|PLD6_DANRE Mitochondrial cardiolipin hydrolase OS=Danio rerio GN=pld6 PE=2
SV=2
Length = 227
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 20/38 (52%), Positives = 25/38 (65%)
Query: 19 MHHKFVLIDSSLVLQGSMNWTTQACSGNYENVVITGTP 56
MHHKF L+D ++ GS+NWT A N ENV+IT P
Sbjct: 157 MHHKFALVDGRKLISGSLNWTLTAVQSNKENVIITEEP 194
>sp|Q9VKD7|ZUC_DROME Mitochondrial cardiolipin hydrolase OS=Drosophila melanogaster
GN=zuc PE=1 SV=1
Length = 253
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 20/70 (28%)
Query: 5 QLNIPVRLTGPPYIMHHKFVLIDS--------------------SLVLQGSMNWTTQACS 44
QL +PVR+ +MH+KF +ID S+V+ GS+NWT
Sbjct: 154 QLGVPVRVPITTNLMHNKFCIIDGFERVEEIRLLRKLKFMRPCYSIVISGSVNWTALGLG 213
Query: 45 GNYENVVITG 54
GN+EN +IT
Sbjct: 214 GNWENCIITA 223
>sp|Q9ZCD8|PLD_RICPR Phospholipase D OS=Rickettsia prowazekii (strain Madrid E) GN=pld
PE=3 SV=1
Length = 205
Score = 38.1 bits (87), Expect = 0.018, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 5 QLNIPVRLTGPPYIMHHKFVLIDSSLVLQGSMNWTTQACSGNYENVVI 52
Q I V + P I H+K ++ID V+ GS N+T A N ENV++
Sbjct: 132 QAKIDVGIDTVPGIAHNKVIIIDKKKVITGSFNFTVSADKRNAENVIL 179
>sp|Q92G53|PLD_RICCN Phospholipase D OS=Rickettsia conorii (strain ATCC VR-613 / Malish
7) GN=pld PE=1 SV=1
Length = 200
Score = 37.7 bits (86), Expect = 0.023, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 8 IPVRLTGPPYIMHHKFVLIDSSLVLQGSMNWTTQACSGNYENVVI 52
I V + P I H+K ++ID V+ GS N+T A N ENV+I
Sbjct: 135 IDVDIDKVPGIAHNKVIIIDKKKVITGSFNFTAAADKRNAENVII 179
>sp|Q68VT0|PLD_RICTY Phospholipase D OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=pld PE=3 SV=1
Length = 204
Score = 37.4 bits (85), Expect = 0.027, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 5 QLNIPVRLTGPPYIMHHKFVLIDSSLVLQGSMNWTTQACSGNYENVVI 52
Q I V + P I H+K ++ID V+ GS N+T A N ENV++
Sbjct: 132 QAKIDVGIDTVPGIAHNKVIIIDKKKVITGSFNFTVAADKRNAENVIL 179
>sp|Q4UJZ1|PLD_RICFE Phospholipase D OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=pld PE=3 SV=1
Length = 200
Score = 37.0 bits (84), Expect = 0.033, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 8 IPVRLTGPPYIMHHKFVLIDSSLVLQGSMNWTTQACSGNYENVVI 52
I V + P I H+K ++ID V+ GS N+T A N ENV+I
Sbjct: 135 IDVGIDKVPGIAHNKVIIIDRKKVITGSFNFTAAADKRNAENVII 179
>sp|Q1RK58|PLD_RICBR Phospholipase D OS=Rickettsia bellii (strain RML369-C) GN=pld PE=3
SV=1
Length = 201
Score = 37.0 bits (84), Expect = 0.038, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 8 IPVRLTGPPYIMHHKFVLIDSSLVLQGSMNWTTQACSGNYENVVI 52
I V + P I H+K ++ID V+ GS N+T A N ENV++
Sbjct: 135 IEVGIDKVPGIAHNKVIIIDKKKVITGSFNFTAAADKRNAENVIV 179
>sp|Q53728|PLD_STRAT Phospholipase D OS=Streptomyces antibioticus PE=1 SV=1
Length = 556
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 14 GPPYIMHHKFVLIDSSLVLQGSMN 37
G PY +HHK V +D S GS N
Sbjct: 483 GKPYALHHKLVSVDDSAFYIGSKN 506
>sp|C3K1C4|CLS_PSEFS Cardiolipin synthase OS=Pseudomonas fluorescens (strain SBW25)
GN=cls PE=3 SV=1
Length = 479
Score = 29.3 bits (64), Expect = 8.4, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 16 PYIMHHKFVLIDSSLVLQGSMNWTTQACSGNYENVVIT 53
P +H K VL+DS + GS N ++ N+E +++T
Sbjct: 393 PGFLHQKVVLVDSEISAIGSANMDNRSFRLNFEVMLLT 430
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,336,848
Number of Sequences: 539616
Number of extensions: 610798
Number of successful extensions: 1306
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1289
Number of HSP's gapped (non-prelim): 16
length of query: 59
length of database: 191,569,459
effective HSP length: 32
effective length of query: 27
effective length of database: 174,301,747
effective search space: 4706147169
effective search space used: 4706147169
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)