Query psy1966
Match_columns 59
No_of_seqs 121 out of 1059
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 20:48:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1966.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1966hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01642 cls cardiolipin synth 99.6 1.4E-16 2.9E-21 110.8 3.6 56 2-58 384-439 (483)
2 PRK13912 nuclease NucT; Provis 99.6 1.5E-16 3.3E-21 98.6 2.9 44 15-58 116-159 (177)
3 PRK11263 cardiolipin synthase 99.6 2.5E-16 5.5E-21 108.2 3.2 56 2-58 272-327 (411)
4 COG1502 Cls Phosphatidylserine 99.6 3.1E-16 6.7E-21 105.7 2.6 56 2-58 338-394 (438)
5 PRK12452 cardiolipin synthetas 99.6 8.7E-16 1.9E-20 107.7 3.2 56 2-58 410-465 (509)
6 PF13091 PLDc_2: PLD-like doma 99.5 9.4E-15 2E-19 84.1 4.3 49 4-57 65-113 (126)
7 cd00138 PLDc Phospholipase D. 99.4 7.1E-13 1.5E-17 80.0 5.6 51 7-57 98-152 (176)
8 PRK09428 pssA phosphatidylseri 99.4 8.5E-13 1.8E-17 91.9 5.4 54 3-57 338-394 (451)
9 PHA02820 phospholipase-D-like 99.3 1.9E-12 4.1E-17 89.5 4.9 53 3-56 297-360 (424)
10 smart00155 PLDc Phospholipase 99.3 2.9E-12 6.2E-17 58.9 3.7 27 16-42 2-28 (28)
11 PHA02820 phospholipase-D-like 99.3 1E-11 2.2E-16 85.9 5.3 54 2-55 93-150 (424)
12 PHA03003 palmytilated EEV memb 99.2 1.3E-11 2.9E-16 83.7 3.7 55 2-58 290-348 (369)
13 PRK05443 polyphosphate kinase; 99.1 1.2E-10 2.7E-15 84.6 4.4 57 2-58 417-480 (691)
14 PF00614 PLDc: Phospholipase D 98.7 6.8E-09 1.5E-13 48.0 1.6 25 17-41 3-27 (28)
15 PRK11263 cardiolipin synthase 98.6 6E-08 1.3E-12 67.0 4.6 56 2-57 83-154 (411)
16 PLN03008 Phospholipase D delta 98.6 4.2E-08 9.1E-13 72.9 4.0 40 18-57 716-757 (868)
17 PLN02352 phospholipase D epsil 98.6 2.5E-08 5.4E-13 73.4 2.7 40 18-57 607-648 (758)
18 PF07894 DUF1669: Protein of u 98.6 2.8E-08 6E-13 66.4 2.7 42 15-56 224-265 (284)
19 KOG3603|consensus 98.6 1.1E-07 2.3E-12 66.7 5.1 53 3-55 148-206 (456)
20 PLN02866 phospholipase D 98.6 7.8E-08 1.7E-12 72.6 4.2 41 17-57 866-908 (1068)
21 PHA03003 palmytilated EEV memb 98.5 1.7E-07 3.6E-12 63.8 4.2 54 2-55 94-152 (369)
22 PRK01642 cls cardiolipin synth 98.3 3.9E-07 8.5E-12 63.7 3.0 56 2-57 192-265 (483)
23 KOG1329|consensus 98.3 6.5E-07 1.4E-11 66.7 4.2 40 18-57 701-742 (887)
24 PLN02270 phospholipase D alpha 98.2 1.1E-06 2.5E-11 65.1 2.7 40 17-56 656-697 (808)
25 PRK05443 polyphosphate kinase; 98.1 2.5E-06 5.4E-11 62.5 2.8 39 20-58 592-633 (691)
26 PRK12452 cardiolipin synthetas 98.0 4.3E-06 9.4E-11 59.1 3.2 56 2-57 215-286 (509)
27 TIGR03705 poly_P_kin polyphosp 98.0 8.6E-06 1.9E-10 59.6 3.9 39 20-58 583-624 (672)
28 TIGR03705 poly_P_kin polyphosp 98.0 1E-05 2.2E-10 59.2 4.0 56 3-58 409-471 (672)
29 PRK09428 pssA phosphatidylseri 97.3 0.00022 4.8E-09 50.2 3.0 51 7-58 118-179 (451)
30 COG1502 Cls Phosphatidylserine 97.1 0.00074 1.6E-08 45.8 3.9 31 16-46 162-192 (438)
31 KOG3603|consensus 96.8 0.0026 5.7E-08 45.1 4.7 53 2-55 355-417 (456)
32 PF13090 PP_kinase_C: Polyphos 96.8 0.001 2.2E-08 45.9 2.4 56 2-57 87-149 (352)
33 PF09565 RE_NgoFVII: NgoFVII r 96.4 0.0091 2E-07 40.3 5.1 41 14-55 76-122 (296)
34 PF06087 Tyr-DNA_phospho: Tyro 96.3 0.0042 9.1E-08 43.4 3.2 40 14-53 344-401 (443)
35 COG3886 Predicted HKD family n 95.0 0.017 3.6E-07 37.2 1.9 47 8-54 108-158 (198)
36 COG0855 Ppk Polyphosphate kina 94.4 0.028 6E-07 41.8 2.0 57 2-58 421-484 (696)
37 PF06087 Tyr-DNA_phospho: Tyro 94.3 0.078 1.7E-06 37.1 4.1 41 14-55 97-141 (443)
38 KOG3964|consensus 93.7 0.03 6.4E-07 39.8 1.0 44 15-58 375-426 (469)
39 PLN02866 phospholipase D 93.2 0.075 1.6E-06 41.3 2.5 35 5-39 426-467 (1068)
40 PLN02270 phospholipase D alpha 72.2 3.9 8.4E-05 31.4 2.6 25 16-40 327-362 (808)
41 PF13090 PP_kinase_C: Polyphos 71.4 3.7 8.1E-05 28.7 2.2 44 16-59 258-304 (352)
42 PLN02352 phospholipase D epsil 69.2 4.4 9.6E-05 30.9 2.4 25 17-41 298-332 (758)
43 PLN03008 Phospholipase D delta 59.5 9.1 0.0002 29.7 2.5 25 17-41 370-402 (868)
44 PF06953 ArsD: Arsenical resis 57.4 11 0.00023 22.6 2.1 16 21-36 73-88 (123)
45 KOG1329|consensus 56.5 6.4 0.00014 30.6 1.2 20 19-38 407-426 (887)
46 PF03265 DNase_II: Deoxyribonu 55.0 21 0.00045 24.0 3.4 28 15-42 265-293 (322)
47 PF13192 Thioredoxin_3: Thiore 51.3 18 0.00039 19.0 2.2 21 15-35 44-64 (76)
48 PF05744 Benyvirus_P25: Benyvi 42.1 21 0.00045 23.5 1.8 37 5-41 127-164 (232)
49 TIGR00201 comF comF family pro 40.4 13 0.00028 23.0 0.6 15 21-36 153-167 (190)
50 TIGR02608 delta_60_rpt delta-6 36.7 64 0.0014 16.5 3.0 12 26-37 10-21 (55)
51 COG0855 Ppk Polyphosphate kina 35.1 63 0.0014 24.7 3.5 51 7-57 583-636 (696)
52 TIGR03757 conj_TIGR03757 integ 34.2 38 0.00082 20.1 1.9 18 22-39 86-103 (113)
53 PF07511 DUF1525: Protein of u 33.9 36 0.00078 20.1 1.8 23 17-39 80-102 (114)
54 COG1040 ComFC Predicted amidop 33.8 16 0.00035 23.6 0.3 15 21-36 185-199 (225)
55 COG2965 PriB Primosomal replic 31.2 55 0.0012 19.2 2.2 21 6-26 14-34 (103)
56 PF06490 FleQ: Flagellar regul 31.1 48 0.001 18.8 2.0 25 29-53 25-49 (109)
57 PHA02677 hypothetical protein; 30.9 36 0.00077 20.1 1.4 25 18-45 38-62 (108)
58 PF13964 Kelch_6: Kelch motif 28.6 75 0.0016 14.9 3.9 19 19-37 3-21 (50)
59 cd00660 Topoisomer_IB_N Topois 28.4 65 0.0014 21.2 2.4 26 20-45 122-147 (215)
60 cd03490 Topoisomer_IB_N_1 Topo 28.1 67 0.0014 21.2 2.4 26 20-45 121-146 (217)
61 cd03488 Topoisomer_IB_N_htopoI 27.2 70 0.0015 21.0 2.4 26 20-45 122-147 (215)
62 cd03489 Topoisomer_IB_N_Ldtopo 27.0 71 0.0015 21.0 2.4 26 20-45 119-144 (212)
63 COG3734 DgoK 2-keto-3-deoxy-ga 25.6 48 0.001 22.9 1.5 15 19-33 148-162 (306)
64 cd07902 Adenylation_DNA_ligase 25.0 91 0.002 19.6 2.6 14 21-34 85-98 (213)
65 PRK02304 adenine phosphoribosy 24.6 29 0.00063 21.1 0.3 17 19-36 113-129 (175)
66 COG4380 Uncharacterized protei 24.4 64 0.0014 20.8 1.8 13 28-40 141-153 (216)
67 PRK13809 orotate phosphoribosy 23.9 33 0.00071 21.9 0.5 15 20-35 118-132 (206)
68 TIGR01090 apt adenine phosphor 23.6 31 0.00067 20.9 0.3 15 21-36 110-124 (169)
69 PRK12560 adenine phosphoribosy 22.5 36 0.00078 21.2 0.4 15 20-35 114-128 (187)
70 TIGR01744 XPRTase xanthine pho 21.7 39 0.00085 21.2 0.5 15 20-35 117-131 (191)
71 PF07472 PA-IIL: Fucose-bindin 21.1 1.9E+02 0.0042 17.0 4.3 37 13-51 64-102 (107)
72 PRK09219 xanthine phosphoribos 20.9 38 0.00081 21.3 0.3 15 19-34 116-130 (189)
73 KOG2711|consensus 20.8 48 0.001 23.5 0.8 13 29-41 23-35 (372)
74 PF13570 PQQ_3: PQQ-like domai 20.8 1E+02 0.0023 13.8 2.0 13 25-37 18-30 (40)
75 PRK07322 adenine phosphoribosy 20.3 39 0.00085 20.7 0.3 15 20-35 120-134 (178)
76 PF07646 Kelch_2: Kelch motif; 20.3 1.2E+02 0.0026 14.2 4.1 18 19-36 3-20 (49)
77 PRK07847 amidophosphoribosyltr 20.2 53 0.0011 24.0 0.9 54 5-59 351-408 (510)
78 PRK02363 DNA-directed RNA poly 20.0 43 0.00093 20.1 0.4 21 24-44 51-71 (129)
No 1
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=99.64 E-value=1.4e-16 Score=110.78 Aligned_cols=56 Identities=21% Similarity=0.322 Sum_probs=51.9
Q ss_pred cccccCceEEEcCCCCcceeeEEEEcCcEEEEeCccCCcccccccceeEEEEeCCCC
Q psy1966 2 PKVQLNIPVRLTGPPYIMHHKFVLIDSSLVLQGSMNWTTQACSGNYENVVITGTPGI 58 (59)
Q Consensus 2 ~~~~~Gi~v~~~~~~~~mH~K~~iiD~~~v~~GS~N~t~~s~~~N~E~~~ii~d~~l 58 (59)
.|+++||+|+. +.++++|+|++|||++++++||+||+.+|+..|+|..++++|+++
T Consensus 384 ~L~~~Gv~I~~-y~~~~~HaK~~ivD~~~~~vGS~N~d~rS~~~N~E~~~~i~d~~~ 439 (483)
T PRK01642 384 ELLEAGVKIYR-YEGGLLHTKSVLVDDELALVGTVNLDMRSFWLNFEITLVIDDTGF 439 (483)
T ss_pred HHHHcCCEEEE-eCCCceEeEEEEECCCEEEeeCCcCCHhHHhhhhcceEEEECHHH
Confidence 46789999998 578999999999999999999999999999999999999999864
No 2
>PRK13912 nuclease NucT; Provisional
Probab=99.63 E-value=1.5e-16 Score=98.58 Aligned_cols=44 Identities=39% Similarity=0.604 Sum_probs=41.1
Q ss_pred CCCcceeeEEEEcCcEEEEeCccCCcccccccceeEEEEeCCCC
Q psy1966 15 PPYIMHHKFVLIDSSLVLQGSMNWTTQACSGNYENVVITGTPGI 58 (59)
Q Consensus 15 ~~~~mH~K~~iiD~~~v~~GS~N~t~~s~~~N~E~~~ii~d~~l 58 (59)
..++||+|++|||++++++||+|||.+|+..|.|..++++||++
T Consensus 116 ~~~~~H~K~~viD~~~~~iGS~N~t~~s~~~N~E~~lii~d~~~ 159 (177)
T PRK13912 116 YYGIMHQKVAIIDDKIVVLGSANWSKNAFENNYEVLLITDDTET 159 (177)
T ss_pred cccccceeEEEEcCCEEEEeCCCCChhHhccCCceEEEECCHHH
Confidence 45789999999999999999999999999999999999999864
No 3
>PRK11263 cardiolipin synthase 2; Provisional
Probab=99.62 E-value=2.5e-16 Score=108.21 Aligned_cols=56 Identities=20% Similarity=0.110 Sum_probs=51.9
Q ss_pred cccccCceEEEcCCCCcceeeEEEEcCcEEEEeCccCCcccccccceeEEEEeCCCC
Q psy1966 2 PKVQLNIPVRLTGPPYIMHHKFVLIDSSLVLQGSMNWTTQACSGNYENVVITGTPGI 58 (59)
Q Consensus 2 ~~~~~Gi~v~~~~~~~~mH~K~~iiD~~~v~~GS~N~t~~s~~~N~E~~~ii~d~~l 58 (59)
.|+++||+|+. +..+++|+|+++||++++++||+||+.+|+..|.|..++++|+++
T Consensus 272 ~Ll~~Gv~I~~-y~~~~lHaK~~viD~~~~~vGS~Nld~rS~~lN~E~~~~i~d~~~ 327 (411)
T PRK11263 272 YLLKGGVQIYE-YCRRPLHGKVALMDDHWATVGSSNLDPLSLSLNLEANLIIRDRAF 327 (411)
T ss_pred HHHHCCCEEEE-ecCCCceeEEEEECCCEEEEeCCcCCHHHhhhhhhcCEEEeCHHH
Confidence 47789999998 567899999999999999999999999999999999999999864
No 4
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=99.60 E-value=3.1e-16 Score=105.69 Aligned_cols=56 Identities=25% Similarity=0.348 Sum_probs=51.0
Q ss_pred cccccCceEEEcCCCC-cceeeEEEEcCcEEEEeCccCCcccccccceeEEEEeCCCC
Q psy1966 2 PKVQLNIPVRLTGPPY-IMHHKFVLIDSSLVLQGSMNWTTQACSGNYENVVITGTPGI 58 (59)
Q Consensus 2 ~~~~~Gi~v~~~~~~~-~mH~K~~iiD~~~v~~GS~N~t~~s~~~N~E~~~ii~d~~l 58 (59)
.|+++|++++. ...| ++|+|++|||++++++||+||+.+|+..|+|+.++++|+++
T Consensus 338 ~l~~~gv~i~~-~~~g~~lH~K~~iiD~~~~~vGS~N~~~rS~~lN~E~~~~i~d~~~ 394 (438)
T COG1502 338 ELLEAGVKVYE-YPGGAFLHSKVMIIDDRTVLVGSANLDPRSLRLNFEVGLVIEDPEL 394 (438)
T ss_pred HHHHhCCEEEE-ecCCCcceeeEEEEcCCEEEEeCCcCCHhHHHHhhhheeEEeCHHH
Confidence 47889999988 4556 99999999999999999999999999999999999999853
No 5
>PRK12452 cardiolipin synthetase; Reviewed
Probab=99.58 E-value=8.7e-16 Score=107.65 Aligned_cols=56 Identities=21% Similarity=0.280 Sum_probs=51.7
Q ss_pred cccccCceEEEcCCCCcceeeEEEEcCcEEEEeCccCCcccccccceeEEEEeCCCC
Q psy1966 2 PKVQLNIPVRLTGPPYIMHHKFVLIDSSLVLQGSMNWTTQACSGNYENVVITGTPGI 58 (59)
Q Consensus 2 ~~~~~Gi~v~~~~~~~~mH~K~~iiD~~~v~~GS~N~t~~s~~~N~E~~~ii~d~~l 58 (59)
.|+++||+|+. +.++++|+|++|||++++++||+||+.+|+..|+|..++++|+++
T Consensus 410 ~L~~aGv~I~~-y~~~~lHaK~~ivD~~~a~vGS~Nld~RS~~~n~E~~~~i~~~~~ 465 (509)
T PRK12452 410 PLLKAGASIYS-YKDGFMHAKIVLVDDKIATIGTANMDVRSFELNYEIISVLYESET 465 (509)
T ss_pred HHHHcCCEEEE-ecCCCeeeeEEEECCCEEEEeCcccCHhHhhhhhhccEEEECHHH
Confidence 47889999998 678999999999999999999999999999999999999988753
No 6
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=99.54 E-value=9.4e-15 Score=84.12 Aligned_cols=49 Identities=37% Similarity=0.512 Sum_probs=40.6
Q ss_pred cccCceEEEcCCCCcceeeEEEEcCcEEEEeCccCCcccccccceeEEEEeCCC
Q psy1966 4 VQLNIPVRLTGPPYIMHHKFVLIDSSLVLQGSMNWTTQACSGNYENVVITGTPG 57 (59)
Q Consensus 4 ~~~Gi~v~~~~~~~~mH~K~~iiD~~~v~~GS~N~t~~s~~~N~E~~~ii~d~~ 57 (59)
.++|++|+ ..+|+|++++|++++++||+|||.+|+..|.|..+++.+|+
T Consensus 65 ~~~~i~v~-----~~~H~K~~i~d~~~~iiGS~N~t~~~~~~n~E~~~~~~~~~ 113 (126)
T PF13091_consen 65 KNAGIEVR-----NRLHAKFYIIDDKVAIIGSANLTSSSFRRNYELGVIIDDPE 113 (126)
T ss_dssp HHTTHCEE-----S-B--EEEEETTTEEEEES--CSCCCSCTSEEEEEEEECHH
T ss_pred ccceEEEe-----cCCCcceEEecCccEEEcCCCCCcchhcCCcceEEEEECHH
Confidence 57888888 58999999999999999999999999999999999998874
No 7
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.40 E-value=7.1e-13 Score=80.01 Aligned_cols=51 Identities=25% Similarity=0.305 Sum_probs=46.0
Q ss_pred CceEEEcCC----CCcceeeEEEEcCcEEEEeCccCCcccccccceeEEEEeCCC
Q psy1966 7 NIPVRLTGP----PYIMHHKFVLIDSSLVLQGSMNWTTQACSGNYENVVITGTPG 57 (59)
Q Consensus 7 Gi~v~~~~~----~~~mH~K~~iiD~~~v~~GS~N~t~~s~~~N~E~~~ii~d~~ 57 (59)
|++++.... .+.+|.|++|||++.+++||+||+.+++..|.|..+++.+|+
T Consensus 98 ~i~~~~~~~~~~~~~~~H~K~~iiD~~~~~vGS~N~~~~~~~~~~e~~~~~~~~~ 152 (176)
T cd00138 98 GVRVFLIRTDKTYGGVLHTKLVIVDDETAYIGSANLDGRSLTLNSEVGVVIYDPA 152 (176)
T ss_pred ceEEEEEcCCcccccceeeeEEEEcCCEEEEECCcCChhhhhhhcceEEEEeChH
Confidence 788887543 379999999999999999999999999999999999999885
No 8
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=99.37 E-value=8.5e-13 Score=91.91 Aligned_cols=54 Identities=17% Similarity=0.174 Sum_probs=50.0
Q ss_pred ccccC---ceEEEcCCCCcceeeEEEEcCcEEEEeCccCCcccccccceeEEEEeCCC
Q psy1966 3 KVQLN---IPVRLTGPPYIMHHKFVLIDSSLVLQGSMNWTTQACSGNYENVVITGTPG 57 (59)
Q Consensus 3 ~~~~G---i~v~~~~~~~~mH~K~~iiD~~~v~~GS~N~t~~s~~~N~E~~~ii~d~~ 57 (59)
++++| |.++. +..+++|+|.++||++++++||+||+.+|+..|.|+.++++||+
T Consensus 338 li~~G~l~v~i~~-~~~~~~HaK~i~vD~~~~~iGS~Nld~RS~~ln~E~~l~i~d~~ 394 (451)
T PRK09428 338 YIDNGQLNVRLWK-DGDNSYHLKGIWVDDRWMLLTGNNLNPRAWRLDLENALLIHDPK 394 (451)
T ss_pred hhhcCcceEEEEe-cCCCcceEEEEEEeCCEEEEcCCCCChhHhhhcccceEEEECCh
Confidence 46778 99998 67899999999999999999999999999999999999999984
No 9
>PHA02820 phospholipase-D-like protein; Provisional
Probab=99.33 E-value=1.9e-12 Score=89.46 Aligned_cols=53 Identities=17% Similarity=0.221 Sum_probs=44.9
Q ss_pred ccccCceEEE--c-C--------CCCcceeeEEEEcCcEEEEeCccCCcccccccceeEEEEeCC
Q psy1966 3 KVQLNIPVRL--T-G--------PPYIMHHKFVLIDSSLVLQGSMNWTTQACSGNYENVVITGTP 56 (59)
Q Consensus 3 ~~~~Gi~v~~--~-~--------~~~~mH~K~~iiD~~~v~~GS~N~t~~s~~~N~E~~~ii~d~ 56 (59)
|.++|++|.+ . . ..+++|+|+||+|+ ++.+||+||+.+||..|+|..++++|+
T Consensus 297 L~~~gv~I~Vk~y~~p~~~~~~~~~~f~HaK~~vvD~-~a~IGTsN~D~rsf~~n~ev~~~i~~~ 360 (424)
T PHA02820 297 LKSKNINIEVKLFIVPDADPPIPYSRVNHAKYMVTDK-TAYIGTSNWTGNYFTDTCGVSINITPD 360 (424)
T ss_pred HhccCceEEEEEEEcCcccccCCcceeeeeeEEEEcc-cEEEECCcCCHHHHhccCcEEEEEecC
Confidence 5678887742 1 1 36899999999996 699999999999999999999999875
No 10
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=99.32 E-value=2.9e-12 Score=58.92 Aligned_cols=27 Identities=22% Similarity=0.479 Sum_probs=24.9
Q ss_pred CCcceeeEEEEcCcEEEEeCccCCccc
Q psy1966 16 PYIMHHKFVLIDSSLVLQGSMNWTTQA 42 (59)
Q Consensus 16 ~~~mH~K~~iiD~~~v~~GS~N~t~~s 42 (59)
.+.+|+|++|+|++++++||+||+.++
T Consensus 2 ~~~~H~K~~v~D~~~~~iGs~N~~~~~ 28 (28)
T smart00155 2 DGVLHTKLMIVDDEIAYIGSANLDGRS 28 (28)
T ss_pred CCcEEeEEEEEcCCEEEEeCccCCCCC
Confidence 568999999999999999999999874
No 11
>PHA02820 phospholipase-D-like protein; Provisional
Probab=99.25 E-value=1e-11 Score=85.89 Aligned_cols=54 Identities=19% Similarity=0.100 Sum_probs=47.3
Q ss_pred cccccCceEEEc----CCCCcceeeEEEEcCcEEEEeCccCCcccccccceeEEEEeC
Q psy1966 2 PKVQLNIPVRLT----GPPYIMHHKFVLIDSSLVLQGSMNWTTQACSGNYENVVITGT 55 (59)
Q Consensus 2 ~~~~~Gi~v~~~----~~~~~mH~K~~iiD~~~v~~GS~N~t~~s~~~N~E~~~ii~d 55 (59)
.|+++||+|+.. ...+.+|.|++|||++++++||+||+++++..|.|..+.+.+
T Consensus 93 ~L~~aGv~v~~~~~~~~~~~~~HrK~~VIDg~~~~iGS~Nid~rsl~~n~E~gv~i~~ 150 (424)
T PHA02820 93 LLQMAGVEVRYIDITNILGGVLHTKFWISDNTHIYLGSANMDWRSLTQVKELGIAIFN 150 (424)
T ss_pred HHHhCCCEEEEEecCCCCcccceeeEEEECCCEEEEeCCcCChhhhhhCCceEEEEec
Confidence 377899999873 245789999999999999999999999999999999888753
No 12
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=99.20 E-value=1.3e-11 Score=83.69 Aligned_cols=55 Identities=15% Similarity=0.110 Sum_probs=43.4
Q ss_pred cccccCc----eEEEcCCCCcceeeEEEEcCcEEEEeCccCCcccccccceeEEEEeCCCC
Q psy1966 2 PKVQLNI----PVRLTGPPYIMHHKFVLIDSSLVLQGSMNWTTQACSGNYENVVITGTPGI 58 (59)
Q Consensus 2 ~~~~~Gi----~v~~~~~~~~mH~K~~iiD~~~v~~GS~N~t~~s~~~N~E~~~ii~d~~l 58 (59)
.|+++|+ +|+..... +|+|++|||++++++||+||+.+++..|.|..+.+.|+++
T Consensus 290 ~L~~~G~~~~i~vri~~~~--~H~K~~VVD~~~a~iGS~N~d~~s~~~~~e~~~~~~~~~~ 348 (369)
T PHA03003 290 SLQALCVGNDLSVKVFRIP--NNTKLLIVDDEFAHITSANFDGTHYLHHAFVSFNTIDKEL 348 (369)
T ss_pred HHHHcCCCCCceEeeecCC--CCceEEEEcCCEEEEeccccCchhhccCCCeEEecCChhH
Confidence 3667782 24432222 8999999999999999999999999999998887777653
No 13
>PRK05443 polyphosphate kinase; Provisional
Probab=99.08 E-value=1.2e-10 Score=84.61 Aligned_cols=57 Identities=18% Similarity=0.166 Sum_probs=52.2
Q ss_pred cccccCceEEEcCCCCcceeeEEEEcCc-------EEEEeCccCCcccccccceeEEEEeCCCC
Q psy1966 2 PKVQLNIPVRLTGPPYIMHHKFVLIDSS-------LVLQGSMNWTTQACSGNYENVVITGTPGI 58 (59)
Q Consensus 2 ~~~~~Gi~v~~~~~~~~mH~K~~iiD~~-------~v~~GS~N~t~~s~~~N~E~~~ii~d~~l 58 (59)
.|.++|+.|......+..|+|.|+||++ ++.+||.||+.+++..|.|..+++.|+++
T Consensus 417 ~L~~aGv~V~y~~~~~k~HaK~~lid~~e~~~~~~~~~iGTgN~n~~s~~~y~D~~l~t~d~~i 480 (691)
T PRK05443 417 RLEEAGVHVVYGVVGLKTHAKLALVVRREGGGLRRYVHLGTGNYNPKTARLYTDLSLLTADPEI 480 (691)
T ss_pred HHHHcCCEEEEccCCccceeEEEEEEeecCCceeEEEEEcCCCCCcchhhhccceeEEEeChHH
Confidence 3678999997767889999999999998 99999999999999999999999998764
No 14
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=98.72 E-value=6.8e-09 Score=48.00 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=16.9
Q ss_pred CcceeeEEEEcCcEEEEeCccCCcc
Q psy1966 17 YIMHHKFVLIDSSLVLQGSMNWTTQ 41 (59)
Q Consensus 17 ~~mH~K~~iiD~~~v~~GS~N~t~~ 41 (59)
+..|.|++|||++.+++||+||+.+
T Consensus 3 ~~~H~K~~vvD~~~a~vGg~nl~~~ 27 (28)
T PF00614_consen 3 GSHHQKFVVVDDRVAFVGGANLCDG 27 (28)
T ss_dssp BEE---EEEETTTEEEEE---SSHH
T ss_pred cceeeEEEEEcCCEEEECceecCCC
Confidence 4679999999999999999999865
No 15
>PRK11263 cardiolipin synthase 2; Provisional
Probab=98.61 E-value=6e-08 Score=67.02 Aligned_cols=56 Identities=21% Similarity=0.351 Sum_probs=41.8
Q ss_pred cccccCceEEEcCCC-----------CcceeeEEEEcCcEEEEeCccCCcccc-----cccceeEEEEeCCC
Q psy1966 2 PKVQLNIPVRLTGPP-----------YIMHHKFVLIDSSLVLQGSMNWTTQAC-----SGNYENVVITGTPG 57 (59)
Q Consensus 2 ~~~~~Gi~v~~~~~~-----------~~mH~K~~iiD~~~v~~GS~N~t~~s~-----~~N~E~~~ii~d~~ 57 (59)
.|.++||+|+...+. +.+|.|++|||++++++||+||+..-+ ....+..+.+..|.
T Consensus 83 ~L~~aGv~v~~~~p~~~~~~~~~~~~~R~HrKiiVIDg~~a~vGg~N~~~~~~~~~g~~~w~D~~v~i~Gp~ 154 (411)
T PRK11263 83 ELTAAGVRFRYFDPRPRLLGMRTNLFRRMHRKIVVIDGRIAFVGGINYSADHLSDYGPEAKQDYAVEVEGPV 154 (411)
T ss_pred HHHHCCeEEEEeCCcccccccccccccCCcceEEEEcCCEEEEcCeEchHhhccccCCCCceEEEEEEECHH
Confidence 477899999874222 268999999999999999999975332 22567777777663
No 16
>PLN03008 Phospholipase D delta
Probab=98.61 E-value=4.2e-08 Score=72.90 Aligned_cols=40 Identities=28% Similarity=0.387 Sum_probs=36.4
Q ss_pred cceeeEEEEcCcEEEEeCccCCcccccc--cceeEEEEeCCC
Q psy1966 18 IMHHKFVLIDSSLVLQGSMNWTTQACSG--NYENVVITGTPG 57 (59)
Q Consensus 18 ~mH~K~~iiD~~~v~~GS~N~t~~s~~~--N~E~~~ii~d~~ 57 (59)
.+|+|.||||++++++||+|++.||+.. +.|..+.+++|.
T Consensus 716 YvHsK~~ivDd~~~~iGSaN~n~RS~~~~Rd~E~~~~~~~~~ 757 (868)
T PLN03008 716 YVHAKGMIVDDEYVLMGSANINQRSMAGTKDTEIAMGAYQPN 757 (868)
T ss_pred EEeeeEEEECCCEEEEeccccCHhhccCCCCceEeEEecccc
Confidence 4699999999999999999999999985 999998887664
No 17
>PLN02352 phospholipase D epsilon
Probab=98.60 E-value=2.5e-08 Score=73.39 Aligned_cols=40 Identities=20% Similarity=0.309 Sum_probs=36.3
Q ss_pred cceeeEEEEcCcEEEEeCccCCccccc--ccceeEEEEeCCC
Q psy1966 18 IMHHKFVLIDSSLVLQGSMNWTTQACS--GNYENVVITGTPG 57 (59)
Q Consensus 18 ~mH~K~~iiD~~~v~~GS~N~t~~s~~--~N~E~~~ii~d~~ 57 (59)
.+|+|.||||++++++||+|...||+. +..|..+.+++++
T Consensus 607 YVHSKlMIVDD~~viIGSANIN~RSM~G~rDSEia~~~~~~~ 648 (758)
T PLN02352 607 YVHSKLMIVDDTYILIGSANVNQRSMDGCRDTEIAIGCYQSK 648 (758)
T ss_pred EEeeeEEEEcCcEEEEcccccccccccCcccchhhhcccccc
Confidence 469999999999999999999999999 7888888887764
No 18
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=98.60 E-value=2.8e-08 Score=66.44 Aligned_cols=42 Identities=21% Similarity=0.259 Sum_probs=38.2
Q ss_pred CCCcceeeEEEEcCcEEEEeCccCCcccccccceeEEEEeCC
Q psy1966 15 PPYIMHHKFVLIDSSLVLQGSMNWTTQACSGNYENVVITGTP 56 (59)
Q Consensus 15 ~~~~mH~K~~iiD~~~v~~GS~N~t~~s~~~N~E~~~ii~d~ 56 (59)
-.|.++.|||+||++.|++|||.|||++.+.|+..+.++..+
T Consensus 224 ~~G~~~eKF~lvD~~~V~~GSYSFtWs~~~~~r~~~~~~tGq 265 (284)
T PF07894_consen 224 FKGQLKEKFMLVDGDKVISGSYSFTWSSSRVHRNLVTVLTGQ 265 (284)
T ss_pred eeCcccceeEEEecccccccccceeecccccccceeEEEecc
Confidence 368999999999999999999999999999999998887643
No 19
>KOG3603|consensus
Probab=98.58 E-value=1.1e-07 Score=66.67 Aligned_cols=53 Identities=23% Similarity=0.209 Sum_probs=45.3
Q ss_pred ccccC-ceEEEc-----CCCCcceeeEEEEcCcEEEEeCccCCcccccccceeEEEEeC
Q psy1966 3 KVQLN-IPVRLT-----GPPYIMHHKFVLIDSSLVLQGSMNWTTQACSGNYENVVITGT 55 (59)
Q Consensus 3 ~~~~G-i~v~~~-----~~~~~mH~K~~iiD~~~v~~GS~N~t~~s~~~N~E~~~ii~d 55 (59)
|.+.| +.++.. ..+|.+|.||.++|.+-...||+||+|+|+..=-|+.++++|
T Consensus 148 Le~~Gaa~vr~id~~~l~g~GvlHtKf~vvD~khfylGSaNfDWrSlTqvkElGv~v~N 206 (456)
T KOG3603|consen 148 LESLGLAQVRSIDMNRLTGGGVLHTKFWVVDIKHFYLGSANFDWRSLTQVKELGVVVRN 206 (456)
T ss_pred HHhCCCceEEeecccccccCceEEEEEEEEecceEEEeccccchhhccceeEeeeEEec
Confidence 45566 666653 358999999999999999999999999999999999998864
No 20
>PLN02866 phospholipase D
Probab=98.56 E-value=7.8e-08 Score=72.65 Aligned_cols=41 Identities=24% Similarity=0.311 Sum_probs=37.3
Q ss_pred CcceeeEEEEcCcEEEEeCccCCcccc--cccceeEEEEeCCC
Q psy1966 17 YIMHHKFVLIDSSLVLQGSMNWTTQAC--SGNYENVVITGTPG 57 (59)
Q Consensus 17 ~~mH~K~~iiD~~~v~~GS~N~t~~s~--~~N~E~~~ii~d~~ 57 (59)
-.+|+|.||||++++++||+|+..||+ .+..|..+++.|++
T Consensus 866 IYVHsK~~IvDD~~~iiGSaNiN~RS~~G~rDsEia~~~~d~~ 908 (1068)
T PLN02866 866 IYVHSKIMIVDDRAALIGSANINDRSLLGSRDSEIGVVIEDKE 908 (1068)
T ss_pred eEEEeeEEEEcCcEEEEccccccccccccCcCcceeeeeeccc
Confidence 357999999999999999999999999 57889999999875
No 21
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=98.49 E-value=1.7e-07 Score=63.79 Aligned_cols=54 Identities=15% Similarity=-0.028 Sum_probs=45.0
Q ss_pred cccccCceEEEcC-----CCCcceeeEEEEcCcEEEEeCccCCcccccccceeEEEEeC
Q psy1966 2 PKVQLNIPVRLTG-----PPYIMHHKFVLIDSSLVLQGSMNWTTQACSGNYENVVITGT 55 (59)
Q Consensus 2 ~~~~~Gi~v~~~~-----~~~~mH~K~~iiD~~~v~~GS~N~t~~s~~~N~E~~~ii~d 55 (59)
.|.++||++.... ..+.+|.|++|||+++.++||+|+++.++..+.|..+..+.
T Consensus 94 ~L~~~Gv~v~~~~~~~~~~~~~~~~k~~IiDg~~~y~Gg~Ni~~~~~~~~~~~g~~~d~ 152 (369)
T PHA03003 94 ELQSSNINYIKVDIGKLNNVGVLLGSFWVSDDRRCYIGNASLTGGSISTIKTLGVYSTY 152 (369)
T ss_pred HHHHcCCEEEEEeccccCCCCceeeeEEEEcCcEEEEecCccCCcccCccccceeEecC
Confidence 4778999987643 14678999999999999999999999999888888777653
No 22
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=98.33 E-value=3.9e-07 Score=63.74 Aligned_cols=56 Identities=21% Similarity=0.160 Sum_probs=40.5
Q ss_pred cccccCceEEEcCC-----------CCcceeeEEEEcCcEEEEeCccCCc-cccccc------ceeEEEEeCCC
Q psy1966 2 PKVQLNIPVRLTGP-----------PYIMHHKFVLIDSSLVLQGSMNWTT-QACSGN------YENVVITGTPG 57 (59)
Q Consensus 2 ~~~~~Gi~v~~~~~-----------~~~mH~K~~iiD~~~v~~GS~N~t~-~s~~~N------~E~~~ii~d~~ 57 (59)
.|.++||++....+ ...+|.|++|||++++++||.|++. ..+..+ ++..+.++.|.
T Consensus 192 ~L~~~Gi~v~~~~p~~~~~~~~~~~n~RnHrKi~VIDg~ia~~Gg~Ni~d~~y~~~~~~~~~w~D~~~~i~Gp~ 265 (483)
T PRK01642 192 ELRNAGVEVVEFLKVNLGRVFRRRLDLRNHRKIVVIDGYIAYTGSMNVVDPEYFKQDPGVGQWRDTHVRIEGPV 265 (483)
T ss_pred HHHHCCCEEEEecCCCcccccccccccccCceEEEEcCCEEEeCCcccCCHHHhCCCCCCCCcEEEEEEEEcHH
Confidence 46789999887411 1248999999999999999999988 544333 44456666553
No 23
>KOG1329|consensus
Probab=98.33 E-value=6.5e-07 Score=66.75 Aligned_cols=40 Identities=25% Similarity=0.350 Sum_probs=34.8
Q ss_pred cceeeEEEEcCcEEEEeCccCCcccccccc--eeEEEEeCCC
Q psy1966 18 IMHHKFVLIDSSLVLQGSMNWTTQACSGNY--ENVVITGTPG 57 (59)
Q Consensus 18 ~mH~K~~iiD~~~v~~GS~N~t~~s~~~N~--E~~~ii~d~~ 57 (59)
.+|+|.||+|++++++||+|...||+..|+ |..+.++|+.
T Consensus 701 YVHsK~mIvDD~~vIIGSANINqRSm~G~RDSEIA~~~~d~~ 742 (887)
T KOG1329|consen 701 YVHSKLMIVDDEYVIIGSANINQRSMLGNRDSEIAMGIYDTN 742 (887)
T ss_pred EEeeeeEEecCCEEEEeecccchhhccCCccceeEEEEeccc
Confidence 469999999999999999999999998776 5666678875
No 24
>PLN02270 phospholipase D alpha
Probab=98.18 E-value=1.1e-06 Score=65.13 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=33.6
Q ss_pred CcceeeEEEEcCcEEEEeCccCCccccc--ccceeEEEEeCC
Q psy1966 17 YIMHHKFVLIDSSLVLQGSMNWTTQACS--GNYENVVITGTP 56 (59)
Q Consensus 17 ~~mH~K~~iiD~~~v~~GS~N~t~~s~~--~N~E~~~ii~d~ 56 (59)
=++|+|.||||++++.+||+|++.+|+. +..|..+..+.|
T Consensus 656 I~vH~K~~ivDd~~~~iGSaN~n~rS~~G~rDSEIam~a~qp 697 (808)
T PLN02270 656 IYVHTKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGGYQP 697 (808)
T ss_pred EEEeeeEEEEcCCEEEEeccccccccccCCccchhhhcccCc
Confidence 3569999999999999999999999998 777766654443
No 25
>PRK05443 polyphosphate kinase; Provisional
Probab=98.08 E-value=2.5e-06 Score=62.49 Aligned_cols=39 Identities=15% Similarity=0.260 Sum_probs=35.8
Q ss_pred eeeEEEE---cCcEEEEeCccCCcccccccceeEEEEeCCCC
Q psy1966 20 HHKFVLI---DSSLVLQGSMNWTTQACSGNYENVVITGTPGI 58 (59)
Q Consensus 20 H~K~~ii---D~~~v~~GS~N~t~~s~~~N~E~~~ii~d~~l 58 (59)
|+|+... |++++++||+||+.+|+..|.|..+.++|+++
T Consensus 592 h~rIy~f~~gd~~~~~iGSAn~d~Rsl~~r~Ev~~~i~d~~~ 633 (691)
T PRK05443 592 HSRIYYFGNGGDEEVYISSADWMPRNLDRRVEVLFPILDPRL 633 (691)
T ss_pred cCEEEEEeCCCCcEEEEECCCCCcccccceEEEeEEEeCHHH
Confidence 7888887 67899999999999999999999999999865
No 26
>PRK12452 cardiolipin synthetase; Reviewed
Probab=98.03 E-value=4.3e-06 Score=59.12 Aligned_cols=56 Identities=18% Similarity=0.258 Sum_probs=39.1
Q ss_pred cccccCceEEEcCC----------CCcceeeEEEEcCcEEEEeCccCCcccccc------cceeEEEEeCCC
Q psy1966 2 PKVQLNIPVRLTGP----------PYIMHHKFVLIDSSLVLQGSMNWTTQACSG------NYENVVITGTPG 57 (59)
Q Consensus 2 ~~~~~Gi~v~~~~~----------~~~mH~K~~iiD~~~v~~GS~N~t~~s~~~------N~E~~~ii~d~~ 57 (59)
+|.++||+|....+ ....|.|++|||++++++||+|+...-+.. .++..+.+..|.
T Consensus 215 ~L~~aGi~v~~f~P~~~~~~~~~~n~RnHRKi~VIDg~ia~~GG~Ni~d~y~~~~~~~~~WrD~~~~i~Gp~ 286 (509)
T PRK12452 215 PMKEAGIEIVEFDPIFSAWLLETVNYRNHRKIVIVDGEIGFTGGLNVGDEYLGRSKKFPVWRDSHLKVEGKA 286 (509)
T ss_pred HHHhCCeEEEEecCcccccccccccCCCCCeEEEEcCCEEEeCCcccchhhcCCCCCCCCceEEEEEEECHH
Confidence 47789999985321 234799999999999999999987543322 344555555543
No 27
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=97.98 E-value=8.6e-06 Score=59.60 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=35.7
Q ss_pred eeeEEEE---cCcEEEEeCccCCcccccccceeEEEEeCCCC
Q psy1966 20 HHKFVLI---DSSLVLQGSMNWTTQACSGNYENVVITGTPGI 58 (59)
Q Consensus 20 H~K~~ii---D~~~v~~GS~N~t~~s~~~N~E~~~ii~d~~l 58 (59)
|+|+..+ |++++++||+||+.|++.+|.|..+.++||++
T Consensus 583 h~rIy~f~~~~d~~~~igSAn~m~Rnl~~r~E~~~~i~d~~~ 624 (672)
T TIGR03705 583 HSRIYYFGNGGEEKVYISSADWMTRNLDRRVEVLFPIEDPTL 624 (672)
T ss_pred cCEEEEEeCCCCcEEEEECCCCCCCcccceEEEEEEEcCHHH
Confidence 8888887 47899999999999999999999999999875
No 28
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=97.96 E-value=1e-05 Score=59.20 Aligned_cols=56 Identities=18% Similarity=0.159 Sum_probs=47.8
Q ss_pred ccccCceEEEcCCCCcceeeEEEEcC-------cEEEEeCccCCcccccccceeEEEEeCCCC
Q psy1966 3 KVQLNIPVRLTGPPYIMHHKFVLIDS-------SLVLQGSMNWTTQACSGNYENVVITGTPGI 58 (59)
Q Consensus 3 ~~~~Gi~v~~~~~~~~mH~K~~iiD~-------~~v~~GS~N~t~~s~~~N~E~~~ii~d~~l 58 (59)
|.+||+.|..+-..-..|+|+|+||. +.+.+||.||.........+..+++.++++
T Consensus 409 le~aG~~viyg~~~~k~H~K~~li~r~~~~~~~~y~~igTgN~n~~ta~~y~D~~l~t~~~~i 471 (672)
T TIGR03705 409 LEEAGVHVVYGVVGLKTHAKLALVVRREGGELRRYVHLGTGNYHPKTARLYTDLSLFTADPEI 471 (672)
T ss_pred HHHcCCEEEEcCCCeeeeeEEEEEEEeeCCceEEEEEecCCCCCCcccccccceeEEEeChHH
Confidence 56799999987667788999999997 369999999999988888999998877653
No 29
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=97.30 E-value=0.00022 Score=50.17 Aligned_cols=51 Identities=14% Similarity=0.286 Sum_probs=35.0
Q ss_pred CceEEEcC-------CCCcceeeEEEEcCcEEEEeCccCCcccccc----cceeEEEEeCCCC
Q psy1966 7 NIPVRLTG-------PPYIMHHKFVLIDSSLVLQGSMNWTTQACSG----NYENVVITGTPGI 58 (59)
Q Consensus 7 Gi~v~~~~-------~~~~mH~K~~iiD~~~v~~GS~N~t~~s~~~----N~E~~~ii~d~~l 58 (59)
|++|.... .-|.+|-|.+|||++++++| +|....=+.. ..+..+.+.+|.+
T Consensus 118 gv~v~~f~~p~~~~e~~gr~HrKi~IiD~~v~ysG-aNi~d~Yl~~~~~~r~Dry~~i~g~~l 179 (451)
T PRK09428 118 GVDIPVYGVPVNTREALGVLHLKGFIIDDTVLYSG-ASLNNVYLHQHDKYRYDRYHLIRNAEL 179 (451)
T ss_pred CceEEEcCCccccchhhhhceeeEEEECCCEEEec-ccccHHHhcCCcccCcceEEEEeCchH
Confidence 47776631 13458999999999999999 7877543332 4466666777654
No 30
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=97.11 E-value=0.00074 Score=45.78 Aligned_cols=31 Identities=23% Similarity=0.347 Sum_probs=27.8
Q ss_pred CCcceeeEEEEcCcEEEEeCccCCccccccc
Q psy1966 16 PYIMHHKFVLIDSSLVLQGSMNWTTQACSGN 46 (59)
Q Consensus 16 ~~~mH~K~~iiD~~~v~~GS~N~t~~s~~~N 46 (59)
...+|.|++|+|++++++|+.|+....+...
T Consensus 162 ~~r~H~K~~viD~~i~~vGg~N~~d~y~~~~ 192 (438)
T COG1502 162 NRRLHRKIVVIDGKVAFVGGANIGDEYFHKD 192 (438)
T ss_pred hccccceEEEEcCCEEEecCcccchhhhccC
Confidence 3459999999999999999999999887776
No 31
>KOG3603|consensus
Probab=96.83 E-value=0.0026 Score=45.07 Aligned_cols=53 Identities=17% Similarity=0.334 Sum_probs=39.5
Q ss_pred cccccCceEEEc----------CCCCcceeeEEEEcCcEEEEeCccCCcccccccceeEEEEeC
Q psy1966 2 PKVQLNIPVRLT----------GPPYIMHHKFVLIDSSLVLQGSMNWTTQACSGNYENVVITGT 55 (59)
Q Consensus 2 ~~~~~Gi~v~~~----------~~~~~mH~K~~iiD~~~v~~GS~N~t~~s~~~N~E~~~ii~d 55 (59)
|+.+..|+|+.- +..-.+|+||||=+. ...+||+||+..=|..-....+++..
T Consensus 355 ~~~~~~iqvk~f~VP~~~~~~ip~~Rv~HnKymVTe~-aayIGTSNws~dYf~~TaG~~ivv~q 417 (456)
T KOG3603|consen 355 PLENGSIQVKFFIVPQTNIEKIPFARVNHNKYMVTES-AAYIGTSNWSGDYFTSTAGTAIVVRQ 417 (456)
T ss_pred ccccCceEEEEEEeCCCccccCchhhhccceeEEeec-ceeeeccCCCccceeccCceEEEEec
Confidence 344555666652 235578999999766 58999999999888888888888753
No 32
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=96.79 E-value=0.001 Score=45.93 Aligned_cols=56 Identities=18% Similarity=0.178 Sum_probs=39.3
Q ss_pred cccccCceEEEcCCCCcceeeEEEEcC-------cEEEEeCccCCcccccccceeEEEEeCCC
Q psy1966 2 PKVQLNIPVRLTGPPYIMHHKFVLIDS-------SLVLQGSMNWTTQACSGNYENVVITGTPG 57 (59)
Q Consensus 2 ~~~~~Gi~v~~~~~~~~mH~K~~iiD~-------~~v~~GS~N~t~~s~~~N~E~~~ii~d~~ 57 (59)
.|.++|+.|...-..-..|+|.|+|=. +++-+||-||.....+.=.+..+++.|++
T Consensus 87 ~Le~aGv~ViyG~~glKvHaK~~lI~R~e~~~~~~Y~hlgTGNyNe~TAr~YtD~~l~Ta~~~ 149 (352)
T PF13090_consen 87 RLEEAGVHVIYGVPGLKVHAKICLIVRREGGGLRRYAHLGTGNYNEKTARIYTDLSLFTADPE 149 (352)
T ss_dssp HHHHCT-EEEE--TT-EE--EEEEEEEEETTEEEEEEEEESS-SSTTHCCCEEEEEEEE--HH
T ss_pred hHHhcCeEEEcCCCChhheeeEEEEEEEeCCcEEEEEEEcCCCcCccchhheecceeecCCHH
Confidence 367899999997788889999999863 78999999999998887777777777654
No 33
>PF09565 RE_NgoFVII: NgoFVII restriction endonuclease; InterPro: IPR019065 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This domain is found in NgoFVII restriction endonuclease, which recognises GCSGC but cleavage site is unknown. It is also found as the C-terminal domain of the res subunit of some type III restriction endonucleases.
Probab=96.43 E-value=0.0091 Score=40.32 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=31.2
Q ss_pred CCCCcceeeEEEE-c-C--cEEEEeCccCCc--ccccccceeEEEEeC
Q psy1966 14 GPPYIMHHKFVLI-D-S--SLVLQGSMNWTT--QACSGNYENVVITGT 55 (59)
Q Consensus 14 ~~~~~mH~K~~ii-D-~--~~v~~GS~N~t~--~s~~~N~E~~~ii~d 55 (59)
.+....|.|..+. . + ..+++||+||+. .+.++.+| ..+..|
T Consensus 76 ~~~~~~HgKlY~f~k~g~~~~a~IGSANfS~~~~~~~~~~E-~~v~~D 122 (296)
T PF09565_consen 76 VPDPPYHGKLYIFSKNGKPFRAYIGSANFSQINGFTRRQYE-AMVTCD 122 (296)
T ss_pred eCCCCcccEEEEEecCCCceEEEEeecccccccccccccee-EEEecC
Confidence 4667789999999 2 2 569999999999 55578899 444444
No 34
>PF06087 Tyr-DNA_phospho: Tyrosyl-DNA phosphodiesterase; InterPro: IPR010347 Covalent intermediates between topoisomerase I and DNA can become dead-end complexes that lead to cell death. Tyrosyl-DNA phosphodiesterase can hydrolyse the bond between topoisomerase I and DNA [].; GO: 0008081 phosphoric diester hydrolase activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3SQ8_A 3SQ5_B 3SQ3_A 1Q32_D 3SQ7_A 1QZQ_A 1RGU_B 1RG2_B 1MU9_B 1RFI_B ....
Probab=96.35 E-value=0.0042 Score=43.39 Aligned_cols=40 Identities=28% Similarity=0.143 Sum_probs=28.4
Q ss_pred CCCCcceeeEEEEcC-------cEEEEeCccCCcccccc-----------cceeEEEE
Q psy1966 14 GPPYIMHHKFVLIDS-------SLVLQGSMNWTTQACSG-----------NYENVVIT 53 (59)
Q Consensus 14 ~~~~~mH~K~~iiD~-------~~v~~GS~N~t~~s~~~-----------N~E~~~ii 53 (59)
+....+|.|+.+... .|++.||+|++..|--. |+|..+++
T Consensus 344 R~~~~pH~K~y~~~~~~~~~~~~W~~lgShNLS~aAWG~~~~~~~~l~i~nyElGVl~ 401 (443)
T PF06087_consen 344 RSRAPPHIKTYMRFSKNDFKSLGWFYLGSHNLSKAAWGKRSKNGSQLSIRNYELGVLF 401 (443)
T ss_dssp TTTS-B--EEEEEEE-TTTSEECEEEEES--BSHHHH-EEETTTTCCEESSBEEEEEE
T ss_pred CCCcCcceEEEEEecCCCCCccceEEeCcccCCHHHhcccccCCceeeecceEEEEEE
Confidence 356788999999764 69999999999887654 99999988
No 35
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=95.00 E-value=0.017 Score=37.24 Aligned_cols=47 Identities=21% Similarity=0.158 Sum_probs=35.4
Q ss_pred ceEEEc-CCCCcceeeEEEEc---CcEEEEeCccCCcccccccceeEEEEe
Q psy1966 8 IPVRLT-GPPYIMHHKFVLID---SSLVLQGSMNWTTQACSGNYENVVITG 54 (59)
Q Consensus 8 i~v~~~-~~~~~mH~K~~iiD---~~~v~~GS~N~t~~s~~~N~E~~~ii~ 54 (59)
|+++.. -+..-+|.|-.+.- +-.+++||.|++.+++.-|.|..+.++
T Consensus 108 ve~r~~~~~~~~fH~KgYiFe~~~~~taiiGSsNlt~sALt~n~Ewn~k~s 158 (198)
T COG3886 108 VELRVSTIGSANFHTKGYIFEHNTGITAIIGSSNLTDSALTVNEEWNLKVS 158 (198)
T ss_pred cceEEEecCccccccceeEEEecceEEEEEccchhhhhhcccCHHHHhhhc
Confidence 444443 24567899877754 356899999999999999999877654
No 36
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=94.39 E-value=0.028 Score=41.75 Aligned_cols=57 Identities=18% Similarity=0.172 Sum_probs=46.6
Q ss_pred cccccCceEEEcCCCCcceeeEEEEcC-------cEEEEeCccCCcccccccceeEEEEeCCCC
Q psy1966 2 PKVQLNIPVRLTGPPYIMHHKFVLIDS-------SLVLQGSMNWTTQACSGNYENVVITGTPGI 58 (59)
Q Consensus 2 ~~~~~Gi~v~~~~~~~~mH~K~~iiD~-------~~v~~GS~N~t~~s~~~N~E~~~ii~d~~l 58 (59)
-|.+||+.|..+-..-..|+|.++|=. +++=.||.||...+.+.=.+..+++-||++
T Consensus 421 ~LE~AGvhVvyG~~glKtHAKm~lVvRrE~~~lrrY~HlGTGNYn~~TAriYTD~sl~Tad~~i 484 (696)
T COG0855 421 RLERAGVHVVYGVVGLKTHAKMLLVVRREGGKLRRYVHLGTGNYNPKTARLYTDLSLLTADPEI 484 (696)
T ss_pred HHHhCCcEEEecccceeeeeeEEEEEEecCCcEEEEEEecCCCCCccceeeeeechhccCCHHH
Confidence 467899999997677788999999842 678899999999888777777777777654
No 37
>PF06087 Tyr-DNA_phospho: Tyrosyl-DNA phosphodiesterase; InterPro: IPR010347 Covalent intermediates between topoisomerase I and DNA can become dead-end complexes that lead to cell death. Tyrosyl-DNA phosphodiesterase can hydrolyse the bond between topoisomerase I and DNA [].; GO: 0008081 phosphoric diester hydrolase activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3SQ8_A 3SQ5_B 3SQ3_A 1Q32_D 3SQ7_A 1QZQ_A 1RGU_B 1RG2_B 1MU9_B 1RFI_B ....
Probab=94.34 E-value=0.078 Score=37.12 Aligned_cols=41 Identities=24% Similarity=0.128 Sum_probs=25.9
Q ss_pred CCCCcceeeEEEE---cC-cEEEEeCccCCcccccccceeEEEEeC
Q psy1966 14 GPPYIMHHKFVLI---DS-SLVLQGSMNWTTQACSGNYENVVITGT 55 (59)
Q Consensus 14 ~~~~~mH~K~~ii---D~-~~v~~GS~N~t~~s~~~N~E~~~ii~d 55 (59)
...|.+|.|+||. |+ -.|++.|+|++..- ..+.+..+.+.|
T Consensus 97 ~~~g~hHsKm~ll~y~~~~lRVvI~TaNl~~~D-w~~~~q~vw~~d 141 (443)
T PF06087_consen 97 IPFGTHHSKMMLLFYEDGSLRVVIPTANLTPYD-WNNKTQGVWIQD 141 (443)
T ss_dssp STT--B--EEEEEEETTCEEEEEEESS-BSHHH-HCSSB-EEEE--
T ss_pred cccccccceeEEEEeCCccEEEEEECCCCCHHH-HCCcceeEEEec
Confidence 3679999999997 56 67999999999874 555777776654
No 38
>KOG3964|consensus
Probab=93.72 E-value=0.03 Score=39.80 Aligned_cols=44 Identities=20% Similarity=0.306 Sum_probs=29.9
Q ss_pred CCCcceeeEEEE---cC---cEEEEeCccCCcccccccceeEEE--EeCCCC
Q psy1966 15 PPYIMHHKFVLI---DS---SLVLQGSMNWTTQACSGNYENVVI--TGTPGI 58 (59)
Q Consensus 15 ~~~~mH~K~~ii---D~---~~v~~GS~N~t~~s~~~N~E~~~i--i~d~~l 58 (59)
++-..|+|-+=- -. -..++||.||+.||..+..|..+. +.|.++
T Consensus 375 ~GwtyHaKGlW~~l~~~~~p~lTvIGSSNf~~RS~~rDlEtn~livT~nqel 426 (469)
T KOG3964|consen 375 RGWTYHAKGLWLYLAGSSLPFLTVIGSSNFGRRSVHRDLETNILIVTENQEL 426 (469)
T ss_pred CCcceeccceeeecccccCceeEEecCCCccccccccccccceEEEecCHHH
Confidence 344568875433 11 346899999999999999995443 456654
No 39
>PLN02866 phospholipase D
Probab=93.20 E-value=0.075 Score=41.28 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=26.2
Q ss_pred ccCceEEEcC---C----CCcceeeEEEEcCcEEEEeCccCC
Q psy1966 5 QLNIPVRLTG---P----PYIMHHKFVLIDSSLVLQGSMNWT 39 (59)
Q Consensus 5 ~~Gi~v~~~~---~----~~~mH~K~~iiD~~~v~~GS~N~t 39 (59)
.+||+|..-. . ...-|-|++|||++++++|..|..
T Consensus 426 h~gI~V~r~P~~~~~~~ln~RhHRKIVVIDg~IAFvGGiNLc 467 (1068)
T PLN02866 426 HENVKVLRYPDHFSSGVYLWSHHEKLVIVDYQICFIGGLDLC 467 (1068)
T ss_pred CCCeEEEecCcccccCcccccCCCCeEEECCCEEEecCcccC
Confidence 3677774421 1 125699999999999999999993
No 40
>PLN02270 phospholipase D alpha
Probab=72.21 E-value=3.9 Score=31.41 Aligned_cols=25 Identities=24% Similarity=0.526 Sum_probs=21.1
Q ss_pred CCcceeeEEEEcCc-----------EEEEeCccCCc
Q psy1966 16 PYIMHHKFVLIDSS-----------LVLQGSMNWTT 40 (59)
Q Consensus 16 ~~~mH~K~~iiD~~-----------~v~~GS~N~t~ 40 (59)
...-|.|++|||++ ++++|-.+++.
T Consensus 327 ~~SHHQKiVVID~~~~~~~~~~r~iVAFVGGIDLc~ 362 (808)
T PLN02270 327 MFTHHQKIVVVDSEMPNGGSQRRRIVSFVGGIDLCD 362 (808)
T ss_pred ccccceeEEEEccCCccccccccceEEEEcceeccC
Confidence 45569999999997 99999988854
No 41
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=71.41 E-value=3.7 Score=28.67 Aligned_cols=44 Identities=18% Similarity=0.301 Sum_probs=30.3
Q ss_pred CCcceeeEEEEc---CcEEEEeCccCCcccccccceeEEEEeCCCCC
Q psy1966 16 PYIMHHKFVLID---SSLVLQGSMNWTTQACSGNYENVVITGTPGIK 59 (59)
Q Consensus 16 ~~~mH~K~~iiD---~~~v~~GS~N~t~~s~~~N~E~~~ii~d~~l~ 59 (59)
.-.=|+.+..+= ...+++||+-|..|-+.+--|.++=+.||.+|
T Consensus 258 RfLEHsRi~~F~n~g~~~~yisSADwM~RNl~rRVEv~~PI~D~~lk 304 (352)
T PF13090_consen 258 RFLEHSRIYYFGNGGDEEVYISSADWMTRNLDRRVEVAFPIYDPRLK 304 (352)
T ss_dssp SSEE--EEEEE-GCCS-EEEEESS-BSHHHHHTCEEEEEE--SHHHH
T ss_pred cccchhheeeecCCCCCeEEEEccccccCCCCeeEEEEeEECCHHHH
Confidence 334488877764 37799999999999999999999999988653
No 42
>PLN02352 phospholipase D epsilon
Probab=69.24 E-value=4.4 Score=30.88 Aligned_cols=25 Identities=16% Similarity=0.457 Sum_probs=20.5
Q ss_pred CcceeeEEEEcCc----------EEEEeCccCCcc
Q psy1966 17 YIMHHKFVLIDSS----------LVLQGSMNWTTQ 41 (59)
Q Consensus 17 ~~mH~K~~iiD~~----------~v~~GS~N~t~~ 41 (59)
..-|.|++|||++ ++++|-..++..
T Consensus 298 ~SHHQK~VVID~~~~~~~~~r~~vAFVGGIDLc~G 332 (758)
T PLN02352 298 FAHHQKTITVDTRANDSISEREIMSFVGGLDLCDG 332 (758)
T ss_pred cccccceEEEccCCCCCccccceEEEEcceeccCC
Confidence 4469999999985 899998887754
No 43
>PLN03008 Phospholipase D delta
Probab=59.50 E-value=9.1 Score=29.72 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=20.5
Q ss_pred CcceeeEEEEcCc--------EEEEeCccCCcc
Q psy1966 17 YIMHHKFVLIDSS--------LVLQGSMNWTTQ 41 (59)
Q Consensus 17 ~~mH~K~~iiD~~--------~v~~GS~N~t~~ 41 (59)
..-|.|++|||++ ++++|-.+++..
T Consensus 370 ~sHHQK~VVID~~~~~~~r~~vAFvGGiDLc~g 402 (868)
T PLN03008 370 FTHHQKCVLVDTQAVGNNRKVTAFIGGLDLCDG 402 (868)
T ss_pred ccccceEEEEccCCCCCccceEEEEcceeccCC
Confidence 4559999999985 899998887654
No 44
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=57.44 E-value=11 Score=22.56 Aligned_cols=16 Identities=25% Similarity=0.443 Sum_probs=12.9
Q ss_pred eeEEEEcCcEEEEeCc
Q psy1966 21 HKFVLIDSSLVLQGSM 36 (59)
Q Consensus 21 ~K~~iiD~~~v~~GS~ 36 (59)
--.++||++++.+|+|
T Consensus 73 LPitlVdGeiv~~G~Y 88 (123)
T PF06953_consen 73 LPITLVDGEIVKTGRY 88 (123)
T ss_dssp -SEEEETTEEEEESS-
T ss_pred CCEEEECCEEEEecCC
Confidence 4578999999999986
No 45
>KOG1329|consensus
Probab=56.49 E-value=6.4 Score=30.59 Aligned_cols=20 Identities=25% Similarity=0.624 Sum_probs=16.6
Q ss_pred ceeeEEEEcCcEEEEeCccC
Q psy1966 19 MHHKFVLIDSSLVLQGSMNW 38 (59)
Q Consensus 19 mH~K~~iiD~~~v~~GS~N~ 38 (59)
-|.|++|||.+.+.+|-.-+
T Consensus 407 HHeK~VVVD~~v~fvGGlDL 426 (887)
T KOG1329|consen 407 HHEKLVVVDQEVAFVGGLDL 426 (887)
T ss_pred cceEEEEEcceeccccceec
Confidence 39999999999998886543
No 46
>PF03265 DNase_II: Deoxyribonuclease II; InterPro: IPR004947 Deoxyribonuclease II (3.1.22.1 from EC) hydrolyses DNA under acidic conditions with a preference for double-stranded DNA. It catalyses the endonucleolytic cleavage of DNA to 3'-phosphomononucleotide and 3'-phosphooligonucleotide end-products. The enzyme may play a role in apoptosis. This family also includes hypothetical proteins from Caenorhabditis elegans.; GO: 0004531 deoxyribonuclease II activity, 0006259 DNA metabolic process
Probab=54.95 E-value=21 Score=23.96 Aligned_cols=28 Identities=14% Similarity=0.200 Sum_probs=23.5
Q ss_pred CCCcceeeEEEE-cCcEEEEeCccCCccc
Q psy1966 15 PPYIMHHKFVLI-DSSLVLQGSMNWTTQA 42 (59)
Q Consensus 15 ~~~~mH~K~~ii-D~~~v~~GS~N~t~~s 42 (59)
....-|+|++|- ++.++-+|..|....-
T Consensus 265 ~~~~DHSKwaVs~~~~~~CigD~Nr~~~Q 293 (322)
T PF03265_consen 265 KSSKDHSKWAVSDNKNWFCIGDINRQKSQ 293 (322)
T ss_pred cccCCeEEEEEecCCCEEEEeCCCCchhh
Confidence 456679999998 5789999999999763
No 47
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=51.34 E-value=18 Score=18.96 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=17.8
Q ss_pred CCCcceeeEEEEcCcEEEEeC
Q psy1966 15 PPYIMHHKFVLIDSSLVLQGS 35 (59)
Q Consensus 15 ~~~~mH~K~~iiD~~~v~~GS 35 (59)
.+|.|-.-.++|||+..+.|+
T Consensus 44 ~ygv~~vPalvIng~~~~~G~ 64 (76)
T PF13192_consen 44 KYGVMSVPALVINGKVVFVGR 64 (76)
T ss_dssp HTT-SSSSEEEETTEEEEESS
T ss_pred HcCCCCCCEEEECCEEEEEec
Confidence 478888899999999999995
No 48
>PF05744 Benyvirus_P25: Benyvirus P25/P26 protein; InterPro: IPR008419 This entry consists of p25 and p26 proteins from the Beet necrotic yellow vein virus (BNYVV), which is a plant pathogenic virus. It is characterised by a positive-stranded single stranded RNA genome that is rod-shaped and non-enveloped in nature. The virus is transmitted by Polymyxa betae, a fungus from the order Plasmodiophorales. p25 is an RNA-3-encoded protein. An estimate of the ratio between synonymous and non-synonymous substitution rates (omega) with maximum-likelihood models showed that the p25 sequences presented the highest (of three benyvirus proteins) mean omega values with strong positive selection acting on 14 amino acids, and particularly on amino acid 68, where the omega value was the highest so far encountered in plant viruses [].
Probab=42.12 E-value=21 Score=23.46 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=29.0
Q ss_pred ccCceEEEcCCCCc-ceeeEEEEcCcEEEEeCccCCcc
Q psy1966 5 QLNIPVRLTGPPYI-MHHKFVLIDSSLVLQGSMNWTTQ 41 (59)
Q Consensus 5 ~~Gi~v~~~~~~~~-mH~K~~iiD~~~v~~GS~N~t~~ 41 (59)
..|+-|..+.-... .|..++++|.++++.|--||+..
T Consensus 127 s~g~~v~~Drv~~v~~~t~~F~vdft~~FrGPGNy~l~ 164 (232)
T PF05744_consen 127 SNGLVVLYDRVYCVPRHTDGFVVDFTTNFRGPGNYLLP 164 (232)
T ss_pred CCceEEEecceEEEEeeccceEEEEEEEEecCCceecc
Confidence 56777877654433 78889999999999999998754
No 49
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=40.41 E-value=13 Score=22.98 Aligned_cols=15 Identities=33% Similarity=0.647 Sum_probs=11.5
Q ss_pred eeEEEEcCcEEEEeCc
Q psy1966 21 HKFVLIDSSLVLQGSM 36 (59)
Q Consensus 21 ~K~~iiD~~~v~~GS~ 36 (59)
.+++|||| ++.||++
T Consensus 153 ~~vllvDD-V~TTGaT 167 (190)
T TIGR00201 153 RNIVLVDD-VVTTGAT 167 (190)
T ss_pred CEEEEEee-eeccHHH
Confidence 46999999 5778853
No 50
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=36.72 E-value=64 Score=16.54 Aligned_cols=12 Identities=17% Similarity=0.504 Sum_probs=9.8
Q ss_pred EcCcEEEEeCcc
Q psy1966 26 IDSSLVLQGSMN 37 (59)
Q Consensus 26 iD~~~v~~GS~N 37 (59)
-|+++++.|++.
T Consensus 10 ~DGkIlv~G~~~ 21 (55)
T TIGR02608 10 SDGKILVAGYVD 21 (55)
T ss_pred CCCcEEEEEEee
Confidence 489999999763
No 51
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=35.05 E-value=63 Score=24.73 Aligned_cols=51 Identities=20% Similarity=0.266 Sum_probs=37.5
Q ss_pred CceEEEcCCCCcceeeEEEEcC---cEEEEeCccCCcccccccceeEEEEeCCC
Q psy1966 7 NIPVRLTGPPYIMHHKFVLIDS---SLVLQGSMNWTTQACSGNYENVVITGTPG 57 (59)
Q Consensus 7 Gi~v~~~~~~~~mH~K~~iiD~---~~v~~GS~N~t~~s~~~N~E~~~ii~d~~ 57 (59)
.|.|+..-..-.=|+....+-. +.+++||+-|..+-+.+--|.++=+.++.
T Consensus 583 NIrV~SIVGRfLEHsRIyyF~ngg~~~vyisSADwM~RNLdrRVEv~~Pi~~~~ 636 (696)
T COG0855 583 NIRVRSIVGRFLEHSRIYYFHNGGDEEVYISSADWMPRNLDRRVEVLFPILDPR 636 (696)
T ss_pred ceEEEeehhhhhccceEEEEecCCcceEEEehhhcccccccceeEEEeecCchH
Confidence 3444443334445888888763 78999999999999999999888776654
No 52
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=34.24 E-value=38 Score=20.07 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=14.6
Q ss_pred eEEEEcCcEEEEeCccCC
Q psy1966 22 KFVLIDSSLVLQGSMNWT 39 (59)
Q Consensus 22 K~~iiD~~~v~~GS~N~t 39 (59)
.-+|||++.|+-|.++-.
T Consensus 86 PAVV~D~~~VVYG~~DV~ 103 (113)
T TIGR03757 86 PAVVVDRRYVVYGETDVA 103 (113)
T ss_pred CEEEEcCCeEEecCccHH
Confidence 348999999999988654
No 53
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=33.89 E-value=36 Score=20.11 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=17.0
Q ss_pred CcceeeEEEEcCcEEEEeCccCC
Q psy1966 17 YIMHHKFVLIDSSLVLQGSMNWT 39 (59)
Q Consensus 17 ~~mH~K~~iiD~~~v~~GS~N~t 39 (59)
|+-.-.-+|+|++.|+-|.++..
T Consensus 80 gi~k~PAVVfD~~~VVYG~tDV~ 102 (114)
T PF07511_consen 80 GITKYPAVVFDDRYVVYGETDVA 102 (114)
T ss_pred CccccCEEEEcCCeEEecccHHH
Confidence 33344558999999999988654
No 54
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=33.77 E-value=16 Score=23.55 Aligned_cols=15 Identities=20% Similarity=0.492 Sum_probs=11.7
Q ss_pred eeEEEEcCcEEEEeCc
Q psy1966 21 HKFVLIDSSLVLQGSM 36 (59)
Q Consensus 21 ~K~~iiD~~~v~~GS~ 36 (59)
-++++||| ++.|||+
T Consensus 185 ~~vlLvDD-V~TTGaT 199 (225)
T COG1040 185 KNVLLVDD-VYTTGAT 199 (225)
T ss_pred CeEEEEec-ccccHHH
Confidence 67899988 5788864
No 55
>COG2965 PriB Primosomal replication protein N [DNA replication, recombination, and repair]
Probab=31.24 E-value=55 Score=19.16 Aligned_cols=21 Identities=43% Similarity=0.607 Sum_probs=16.5
Q ss_pred cCceEEEcCCCCcceeeEEEE
Q psy1966 6 LNIPVRLTGPPYIMHHKFVLI 26 (59)
Q Consensus 6 ~Gi~v~~~~~~~~mH~K~~ii 26 (59)
+..|++...+.|+-|.+|++=
T Consensus 14 ak~~~r~~sPsGIphc~f~Le 34 (103)
T COG2965 14 AKVPVRRYSPSGIPHCQFVLE 34 (103)
T ss_pred eccceeeeCCCCCeeEEEEEe
Confidence 345777777899999999883
No 56
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=31.11 E-value=48 Score=18.80 Aligned_cols=25 Identities=16% Similarity=0.314 Sum_probs=15.9
Q ss_pred cEEEEeCccCCcccccccceeEEEE
Q psy1966 29 SLVLQGSMNWTTQACSGNYENVVIT 53 (59)
Q Consensus 29 ~~v~~GS~N~t~~s~~~N~E~~~ii 53 (59)
+...++|..|........++..+++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~v~ 49 (109)
T PF06490_consen 25 QCEAVSSSDWSQADWSSPWEACAVI 49 (109)
T ss_pred CeEEecHHHHHHhhhhcCCcEEEEE
Confidence 6677788888555555555555554
No 57
>PHA02677 hypothetical protein; Provisional
Probab=30.93 E-value=36 Score=20.11 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=17.6
Q ss_pred cceeeEEEEcCcEEEEeCccCCcccccc
Q psy1966 18 IMHHKFVLIDSSLVLQGSMNWTTQACSG 45 (59)
Q Consensus 18 ~mH~K~~iiD~~~v~~GS~N~t~~s~~~ 45 (59)
..+.||..||++.+ |+.|+.++...
T Consensus 38 ~l~~~~~CVd~~l~---~Y~f~~sGi~A 62 (108)
T PHA02677 38 NAGDVYRCVDGRVV---SYALGPTGIRA 62 (108)
T ss_pred hcCCcEEEeCCcEE---EEEecccceEE
Confidence 56899999999754 45666666544
No 58
>PF13964 Kelch_6: Kelch motif
Probab=28.64 E-value=75 Score=14.89 Aligned_cols=19 Identities=16% Similarity=0.370 Sum_probs=13.1
Q ss_pred ceeeEEEEcCcEEEEeCcc
Q psy1966 19 MHHKFVLIDSSLVLQGSMN 37 (59)
Q Consensus 19 mH~K~~iiD~~~v~~GS~N 37 (59)
.|+-.+++|+++-++|-.+
T Consensus 3 ~~~s~v~~~~~iyv~GG~~ 21 (50)
T PF13964_consen 3 YGHSAVVVGGKIYVFGGYD 21 (50)
T ss_pred ccCEEEEECCEEEEECCCC
Confidence 3566788899887776443
No 59
>cd00660 Topoisomer_IB_N Topoisomer_IB_N: N-terminal DNA binding fragment found in eukaryotic DNA topoisomerase (topo) IB proteins similar to the monomeric yeast and human topo I and heterodimeric topo I from Leishmania donvanni. Topo I enzymes are divided into: topo type IA (bacterial) and type IB (eukaryotic). Topo I relaxes superhelical tension in duplex DNA by creating a single-strand nick, the broken strand can then rotate around the unbroken strand to remove DNA supercoils and, the nick is religated, liberating topo I. These enzymes regulate the topological changes that accompany DNA replication, transcription and other nuclear processes. Human topo I is the target of a diverse set of anticancer drugs including camptothecins (CPTs). CPTs bind to the topo I-DNA complex and inhibit re-ligation of the single-strand nick, resulting in the accumulation of topo I-DNA adducts. In addition to differences in structure and some biochemical properties, Trypanosomatid parasite topo I diffe
Probab=28.45 E-value=65 Score=21.19 Aligned_cols=26 Identities=12% Similarity=0.101 Sum_probs=21.9
Q ss_pred eeeEEEEcCcEEEEeCccCCcccccc
Q psy1966 20 HHKFVLIDSSLVLQGSMNWTTQACSG 45 (59)
Q Consensus 20 H~K~~iiD~~~v~~GS~N~t~~s~~~ 45 (59)
.-++|+|||+.-=+|.+.....++.+
T Consensus 122 ~Y~~~~vDG~kekVgNfrvEPPgLFr 147 (215)
T cd00660 122 PYGYCLVDGHKEKVGNFRIEPPGLFR 147 (215)
T ss_pred cCCEEEECCEEEeeCCcccCCCcccc
Confidence 34789999999999999888877765
No 60
>cd03490 Topoisomer_IB_N_1 Topoisomer_IB_N_1: A subgroup of the N-terminal DNA binding fragment found in eukaryotic DNA topoisomerase (topo) IB. Topo IB proteins include the monomeric yeast and human topo I and heterodimeric topo I from Leishmania donvanni. Topo I enzymes are divided into: topo type IA (bacterial) and type IB (eukaryotic). Topo I relaxes superhelical tension in duplex DNA by creating a single-strand nick, the broken strand can then rotate around the unbroken strand to remove DNA supercoils and, the nick is religated, liberating topo I. These enzymes regulate the topological changes that accompany DNA replication, transcription and other nuclear processes. Human topo I is the target of a diverse set of anticancer drugs including camptothecins (CPTs). CPTs bind to the topo I-DNA complex and inhibit religation of the single-strand nick, resulting in the accumulation of topo I-DNA adducts. In addition to differences in structure and some biochemical properties, Trypanoso
Probab=28.05 E-value=67 Score=21.18 Aligned_cols=26 Identities=12% Similarity=-0.008 Sum_probs=21.9
Q ss_pred eeeEEEEcCcEEEEeCccCCcccccc
Q psy1966 20 HHKFVLIDSSLVLQGSMNWTTQACSG 45 (59)
Q Consensus 20 H~K~~iiD~~~v~~GS~N~t~~s~~~ 45 (59)
.-++|+|||+.-=+|++.....++.+
T Consensus 121 ~Y~~~~vDG~kekVgNfriEPPgLFr 146 (217)
T cd03490 121 PFNYALVDWIREKVSSNKLEPPGLFK 146 (217)
T ss_pred cCCEEEECCEEEeeCCcccCCCcccc
Confidence 34799999999999999888887765
No 61
>cd03488 Topoisomer_IB_N_htopoI_like Topoisomer_IB_N_htopoI_like : N-terminal DNA binding fragment found in eukaryotic DNA topoisomerase (topo) IB proteins similar to the monomeric yeast and human topo I. Topo I enzymes are divided into: topo type IA (bacterial) and type IB (eukaryotic). Topo I relaxes superhelical tension in duplex DNA by creating a single-strand nick, the broken strand can then rotate around the unbroken strand to remove DNA supercoils and, the nick is religated, liberating topo I. These enzymes regulate the topological changes that accompany DNA replication, transcription and other nuclear processes. Human topo I is the target of a diverse set of anticancer drugs including camptothecins (CPTs). CPTs bind to the topo I-DNA complex and inhibit religation of the single-strand nick, resulting in the accumulation of topo I-DNA adducts. This family may represent more than one structural domain.
Probab=27.16 E-value=70 Score=21.05 Aligned_cols=26 Identities=12% Similarity=0.125 Sum_probs=21.9
Q ss_pred eeeEEEEcCcEEEEeCccCCcccccc
Q psy1966 20 HHKFVLIDSSLVLQGSMNWTTQACSG 45 (59)
Q Consensus 20 H~K~~iiD~~~v~~GS~N~t~~s~~~ 45 (59)
.-++|+|||+.-=+|++.....++.+
T Consensus 122 ~Y~~~~vDG~kekVgNfrvEPPgLFr 147 (215)
T cd03488 122 EYGFCILDGHKEKVGNFRIEPPGLFR 147 (215)
T ss_pred cCCEEEECCEEEeeCCcccCCCcccc
Confidence 34789999999999999888877765
No 62
>cd03489 Topoisomer_IB_N_LdtopoI_like Topoisomer_IB_N_LdtopoI_like: N-terminal DNA binding fragment found in eukaryotic DNA topoisomerase (topo) IB proteins similar to the heterodimeric topo I from Leishmania donvanni. Topo I enzymes are divided into: topo type IA (bacterial) and type IB (eukaryotic). Topo I relaxes superhelical tension in duplex DNA by creating a single-strand nick, the broken strand can then rotate around the unbroken strand to remove DNA supercoils and, the nick is religated, liberating topo I. These enzymes regulate the topological changes that accompany DNA replication, transcription and other nuclear processes. Human topo I is the target of a diverse set of anticancer drugs including camptothecins (CPTs). CPTs bind to the topo I-DNA complex and inhibit re-ligation of the single-strand nick, resulting in the accumulation of topo I-DNA adducts. In addition to differences in structure and some biochemical properties, Trypanosomatid parasite topo I differ from human
Probab=26.96 E-value=71 Score=20.97 Aligned_cols=26 Identities=4% Similarity=-0.105 Sum_probs=21.8
Q ss_pred eeeEEEEcCcEEEEeCccCCcccccc
Q psy1966 20 HHKFVLIDSSLVLQGSMNWTTQACSG 45 (59)
Q Consensus 20 H~K~~iiD~~~v~~GS~N~t~~s~~~ 45 (59)
.-++|+|||+.-=+|.+.....++.+
T Consensus 119 ~Y~~~~vDG~kekVgNFrvEPPgLFr 144 (212)
T cd03489 119 PYMWCVWDGVKEQVANFRVEPPGLFR 144 (212)
T ss_pred cCCEEEECCEEEeeCCcccCCCcccc
Confidence 34789999999999999888877765
No 63
>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]
Probab=25.63 E-value=48 Score=22.91 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=11.2
Q ss_pred ceeeEEEEcCcEEEE
Q psy1966 19 MHHKFVLIDSSLVLQ 33 (59)
Q Consensus 19 mH~K~~iiD~~~v~~ 33 (59)
-|+|++.+|+.-+..
T Consensus 148 THsKWv~v~~gqi~~ 162 (306)
T COG3734 148 THSKWVRVDDGQIET 162 (306)
T ss_pred CCceeEEecCCceee
Confidence 499999999744433
No 64
>cd07902 Adenylation_DNA_ligase_III Adenylation domain of DNA Ligase III. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three-step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriophages, eukarya, archaea and bacteria. There are three classes of ATP-dependent DNA ligases in eukaryotic cells (I, III and IV). DNA ligase III is not found in lower eukaryotes and is present both in the nucleus and mitochondria. It has several isoforms; two splice forms, III-alpha and III-beta, differ in their carboxy-terminal sequences. DNA ligase III-beta is believed to play a role in homologous recombination during meiotic prophase. DNA ligase III-alpha interacts with X-ray Cross Complementing factor 1 (XRCC1) and functions in single nuc
Probab=24.99 E-value=91 Score=19.57 Aligned_cols=14 Identities=21% Similarity=0.404 Sum_probs=10.9
Q ss_pred eeEEEEcCcEEEEe
Q psy1966 21 HKFVLIDSSLVLQG 34 (59)
Q Consensus 21 ~K~~iiD~~~v~~G 34 (59)
.+-||+||++++.+
T Consensus 85 ~~~~iLDGEiv~~d 98 (213)
T cd07902 85 GHSMILDSEVLLVD 98 (213)
T ss_pred ccceeeeeEEEEEE
Confidence 44689999998854
No 65
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=24.60 E-value=29 Score=21.09 Aligned_cols=17 Identities=18% Similarity=0.458 Sum_probs=12.2
Q ss_pred ceeeEEEEcCcEEEEeCc
Q psy1966 19 MHHKFVLIDSSLVLQGSM 36 (59)
Q Consensus 19 mH~K~~iiD~~~v~~GS~ 36 (59)
--.+++|||+ ++-+|++
T Consensus 113 ~g~~VLIVDD-ivtTG~T 129 (175)
T PRK02304 113 PGDRVLIVDD-LLATGGT 129 (175)
T ss_pred CCCEEEEEeC-CccccHH
Confidence 3578999998 4666654
No 66
>COG4380 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.41 E-value=64 Score=20.84 Aligned_cols=13 Identities=15% Similarity=0.192 Sum_probs=8.4
Q ss_pred CcEEEEeCccCCc
Q psy1966 28 SSLVLQGSMNWTT 40 (59)
Q Consensus 28 ~~~v~~GS~N~t~ 40 (59)
++.+|+||+.-+.
T Consensus 141 G~~LWsGsasASs 153 (216)
T COG4380 141 GKELWSGSASASS 153 (216)
T ss_pred Cceeecccccccc
Confidence 3778888765443
No 67
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=23.91 E-value=33 Score=21.89 Aligned_cols=15 Identities=20% Similarity=0.454 Sum_probs=10.9
Q ss_pred eeeEEEEcCcEEEEeC
Q psy1966 20 HHKFVLIDSSLVLQGS 35 (59)
Q Consensus 20 H~K~~iiD~~~v~~GS 35 (59)
..+++|||+ ++.||+
T Consensus 118 g~~VlIVDD-ViTTG~ 132 (206)
T PRK13809 118 GQTCLVIND-MVSSGK 132 (206)
T ss_pred CCEEEEEEe-ccccCH
Confidence 368999999 456664
No 68
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=23.63 E-value=31 Score=20.88 Aligned_cols=15 Identities=20% Similarity=0.620 Sum_probs=10.6
Q ss_pred eeEEEEcCcEEEEeCc
Q psy1966 21 HKFVLIDSSLVLQGSM 36 (59)
Q Consensus 21 ~K~~iiD~~~v~~GS~ 36 (59)
.+++|||+ ++-+|++
T Consensus 110 k~VLIVDD-IitTG~T 124 (169)
T TIGR01090 110 QRVLIVDD-LLATGGT 124 (169)
T ss_pred CEEEEEec-cccchHH
Confidence 47899998 4566653
No 69
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=22.54 E-value=36 Score=21.23 Aligned_cols=15 Identities=20% Similarity=0.430 Sum_probs=10.8
Q ss_pred eeeEEEEcCcEEEEeC
Q psy1966 20 HHKFVLIDSSLVLQGS 35 (59)
Q Consensus 20 H~K~~iiD~~~v~~GS 35 (59)
-.|++|||+ ++.+|+
T Consensus 114 G~rVlIVDD-vitTG~ 128 (187)
T PRK12560 114 GDRVAIIDD-TLSTGG 128 (187)
T ss_pred cCEEEEEEe-ccccCH
Confidence 568999999 455554
No 70
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=21.74 E-value=39 Score=21.22 Aligned_cols=15 Identities=20% Similarity=0.629 Sum_probs=10.4
Q ss_pred eeeEEEEcCcEEEEeC
Q psy1966 20 HHKFVLIDSSLVLQGS 35 (59)
Q Consensus 20 H~K~~iiD~~~v~~GS 35 (59)
=.|++|||+ ++.+|.
T Consensus 117 G~rVLIVDD-vvtTGg 131 (191)
T TIGR01744 117 QDRVLIIDD-FLANGQ 131 (191)
T ss_pred cCEEEEEEe-hhccCh
Confidence 468899998 455554
No 71
>PF07472 PA-IIL: Fucose-binding lectin II (PA-IIL); InterPro: IPR010907 This entry represents calcium-mediated lectins. Structures have been determined for both fucose-binding lectin II (PA-IIL) [] and mannose-specific lectin II (RS-IIL) []. These proteins have homologous structures, their monomers consisting of a 9-stranded beta sandwich with Greek-key topology. Each monomer contains two calcium ions that mediate an exceptionally high binding affinity to the monosaccharide ligand in a recognition mode unique among carbohydrate-protein interactions. In Pseudomonas aeruginosa, PA-IIL contributes to the pathogenic virulence of the bacterium, functioning as a tetramer when binding fucose []. In the plant pathogen Ralstonia solanacearum (Pseudomonas solanacearum), RS-IIL recognises fucose, but displays much higher affinity to mannose and fructose, which is opposite to the preference of PA-IIL. ; PDB: 2WRA_A 2WR9_C 1OUX_C 2VUC_B 1GZT_C 2BOJ_D 2JDM_D 2JDH_D 1W8F_D 1UZV_A ....
Probab=21.09 E-value=1.9e+02 Score=17.00 Aligned_cols=37 Identities=24% Similarity=0.229 Sum_probs=26.2
Q ss_pred cCCCCcceeeEEEEcCc--EEEEeCccCCcccccccceeEE
Q psy1966 13 TGPPYIMHHKFVLIDSS--LVLQGSMNWTTQACSGNYENVV 51 (59)
Q Consensus 13 ~~~~~~mH~K~~iiD~~--~v~~GS~N~t~~s~~~N~E~~~ 51 (59)
+.++..+......+|++ +.++||-|-+.. .+|+..++
T Consensus 64 ngk~s~l~~~q~~l~~~~~~~ivgsEdGtD~--DYND~ivv 102 (107)
T PF07472_consen 64 NGKPSKLRSSQNTLDGKPYFGIVGSEDGTDN--DYNDSIVV 102 (107)
T ss_dssp TTEE-EEEEEEEEETTTEEEEEEEEESSSSS--SSBSEEEE
T ss_pred CCccccceeeeeeccCceeEEEEEcccCCCC--CcccEEEE
Confidence 45677788888889984 488999998765 36665544
No 72
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=20.89 E-value=38 Score=21.31 Aligned_cols=15 Identities=20% Similarity=0.417 Sum_probs=10.3
Q ss_pred ceeeEEEEcCcEEEEe
Q psy1966 19 MHHKFVLIDSSLVLQG 34 (59)
Q Consensus 19 mH~K~~iiD~~~v~~G 34 (59)
--.|++|||+- +.+|
T Consensus 116 ~G~rVlIVDDv-iaTG 130 (189)
T PRK09219 116 EGDRVLIIDDF-LANG 130 (189)
T ss_pred CCCEEEEEeeh-hhcC
Confidence 35789999983 3444
No 73
>KOG2711|consensus
Probab=20.83 E-value=48 Score=23.49 Aligned_cols=13 Identities=31% Similarity=0.685 Sum_probs=11.0
Q ss_pred cEEEEeCccCCcc
Q psy1966 29 SLVLQGSMNWTTQ 41 (59)
Q Consensus 29 ~~v~~GS~N~t~~ 41 (59)
+++++||-||...
T Consensus 23 kV~ivGsGnWGsa 35 (372)
T KOG2711|consen 23 KVCIVGSGNWGSA 35 (372)
T ss_pred EEEEEccChHHHH
Confidence 6789999999865
No 74
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=20.75 E-value=1e+02 Score=13.80 Aligned_cols=13 Identities=15% Similarity=0.230 Sum_probs=8.6
Q ss_pred EEcCcEEEEeCcc
Q psy1966 25 LIDSSLVLQGSMN 37 (59)
Q Consensus 25 iiD~~~v~~GS~N 37 (59)
++++..|++|+.+
T Consensus 18 ~v~~g~vyv~~~d 30 (40)
T PF13570_consen 18 AVAGGRVYVGTGD 30 (40)
T ss_dssp EECTSEEEEE-TT
T ss_pred EEECCEEEEEcCC
Confidence 5566678998874
No 75
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=20.30 E-value=39 Score=20.74 Aligned_cols=15 Identities=20% Similarity=0.457 Sum_probs=10.8
Q ss_pred eeeEEEEcCcEEEEeC
Q psy1966 20 HHKFVLIDSSLVLQGS 35 (59)
Q Consensus 20 H~K~~iiD~~~v~~GS 35 (59)
-.|++|||+- +-+|+
T Consensus 120 gk~VLIVDDi-itTG~ 134 (178)
T PRK07322 120 GKRVAIVDDV-VSTGG 134 (178)
T ss_pred CCEEEEEecc-ccccH
Confidence 4689999994 55664
No 76
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=20.30 E-value=1.2e+02 Score=14.22 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=14.7
Q ss_pred ceeeEEEEcCcEEEEeCc
Q psy1966 19 MHHKFVLIDSSLVLQGSM 36 (59)
Q Consensus 19 mH~K~~iiD~~~v~~GS~ 36 (59)
.++-.+++|+++.+.|-+
T Consensus 3 ~~hs~~~~~~kiyv~GG~ 20 (49)
T PF07646_consen 3 YGHSAVVLDGKIYVFGGY 20 (49)
T ss_pred cceEEEEECCEEEEECCc
Confidence 356678899999999987
No 77
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=20.17 E-value=53 Score=23.96 Aligned_cols=54 Identities=24% Similarity=0.409 Sum_probs=28.4
Q ss_pred ccCceEEEcCCCCcce-eeEEEEcCcEEEEeCccCCcc-cc--cccceeEEEEeCCCCC
Q psy1966 5 QLNIPVRLTGPPYIMH-HKFVLIDSSLVLQGSMNWTTQ-AC--SGNYENVVITGTPGIK 59 (59)
Q Consensus 5 ~~Gi~v~~~~~~~~mH-~K~~iiD~~~v~~GS~N~t~~-s~--~~N~E~~~ii~d~~l~ 59 (59)
+.++..+.+.-..... .+++|||+. +.+||+=..-. .+ ....|.-+.+.+|.++
T Consensus 351 ~~~~r~k~~~~~~~~~gk~vllVDD~-ittG~T~~~~~~~L~~~ga~~v~~ri~sPpi~ 408 (510)
T PRK07847 351 QLGIRLKLNPLREVIRGKRLVVVDDS-IVRGNTQRALVRMLREAGAAEVHVRISSPPVK 408 (510)
T ss_pred hhceeeecCccccccCCCEEEEEecc-cCchHHHHHHHHHHHHcCCCEEEEEECCCCcC
Confidence 3455555422222233 358999995 57786543221 11 1245666667777664
No 78
>PRK02363 DNA-directed RNA polymerase subunit delta; Reviewed
Probab=20.01 E-value=43 Score=20.10 Aligned_cols=21 Identities=14% Similarity=0.400 Sum_probs=18.1
Q ss_pred EEEcCcEEEEeCccCCccccc
Q psy1966 24 VLIDSSLVLQGSMNWTTQACS 44 (59)
Q Consensus 24 ~iiD~~~v~~GS~N~t~~s~~ 44 (59)
+.+||+.+..|---|..++..
T Consensus 51 Ln~DGRFi~lG~n~WgLr~w~ 71 (129)
T PRK02363 51 LNLDGRFISLGDNKWGLRSWY 71 (129)
T ss_pred HhccCCeeEcCCCceeccccc
Confidence 567999999999999998844
Done!