Query psy1966
Match_columns 59
No_of_seqs 121 out of 1059
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 20:48:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1966.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1966hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ggj_A Mitochondrial cardiolip 99.8 2.2E-19 7.4E-24 111.4 2.9 56 2-57 106-161 (196)
2 1byr_A Protein (endonuclease); 99.6 2.1E-16 7.1E-21 92.9 4.8 54 3-56 77-130 (155)
3 3hsi_A Phosphatidylserine synt 99.5 1.8E-15 6.1E-20 103.8 3.4 54 3-57 345-401 (458)
4 4gel_A Mitochondrial cardiolip 99.5 2.1E-15 7.1E-20 93.3 2.9 56 3-58 119-194 (220)
5 1v0w_A Phospholipase D; hydrol 99.2 1.1E-11 3.6E-16 84.9 3.7 40 16-58 436-475 (506)
6 1xdp_A Polyphosphate kinase; P 99.2 1.2E-11 4E-16 88.6 3.8 55 2-57 416-478 (687)
7 1xdp_A Polyphosphate kinase; P 98.4 1.3E-07 4.5E-12 67.8 2.3 39 20-58 591-632 (687)
8 2o8r_A Polyphosphate kinase; s 98.3 2.4E-07 8.3E-12 66.8 2.3 41 18-58 595-638 (705)
9 2o8r_A Polyphosphate kinase; s 98.2 5.5E-07 1.9E-11 65.0 2.5 56 2-57 421-485 (705)
10 1v0w_A Phospholipase D; hydrol 98.0 2.4E-06 8.3E-11 58.4 2.9 42 15-56 162-207 (506)
11 2c1l_A Restriction endonucleas 98.0 3.9E-06 1.3E-10 55.7 3.6 54 3-56 88-144 (358)
12 3hsi_A Phosphatidylserine synt 97.9 9.3E-07 3.2E-11 60.6 -0.9 29 16-45 138-166 (458)
13 1q32_A TDP1P;, tyrosyl-DNA pho 95.0 0.03 1E-06 39.5 4.3 41 14-54 426-488 (544)
14 3qph_A TRMB, A global transcri 93.7 0.0023 7.8E-08 42.3 -3.4 33 23-56 192-228 (342)
15 1jy1_A TDP1, tyrosyl-DNA phosp 92.8 0.13 4.5E-06 35.4 4.1 40 14-53 343-399 (464)
16 1jy1_A TDP1, tyrosyl-DNA phosp 91.4 0.33 1.1E-05 33.4 4.8 40 15-55 114-156 (464)
17 3sq7_A Tyrosyl-DNA phosphodies 84.0 0.85 2.9E-05 31.7 3.1 26 15-40 100-129 (470)
18 1q32_A TDP1P;, tyrosyl-DNA pho 81.8 1.3 4.5E-05 31.2 3.4 37 16-53 178-218 (544)
19 3sq7_A Tyrosyl-DNA phosphodies 77.4 1.9 6.6E-05 29.9 3.1 40 17-56 352-413 (470)
20 3ktb_A Arsenical resistance op 60.9 5.3 0.00018 22.5 2.0 22 15-36 70-91 (106)
21 3kgk_A Arsenical resistance op 56.2 8.2 0.00028 21.9 2.3 21 16-36 68-88 (110)
22 3nme_A Ptpkis1 protein, SEX4 g 35.9 23 0.00079 22.5 2.3 40 15-55 215-254 (294)
23 3dt5_A Uncharacterized protein 30.7 9 0.00031 21.8 -0.3 21 18-42 67-87 (135)
24 1ois_A DNA topoisomerase I; DN 22.8 69 0.0023 20.3 2.7 25 21-45 130-154 (223)
25 3ulb_A Target of rapamycin com 21.4 60 0.002 18.7 2.0 15 20-34 28-42 (121)
No 1
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=99.76 E-value=2.2e-19 Score=111.45 Aligned_cols=56 Identities=39% Similarity=0.567 Sum_probs=52.2
Q ss_pred cccccCceEEEcCCCCcceeeEEEEcCcEEEEeCccCCcccccccceeEEEEeCCC
Q psy1966 2 PKVQLNIPVRLTGPPYIMHHKFVLIDSSLVLQGSMNWTTQACSGNYENVVITGTPG 57 (59)
Q Consensus 2 ~~~~~Gi~v~~~~~~~~mH~K~~iiD~~~v~~GS~N~t~~s~~~N~E~~~ii~d~~ 57 (59)
.|.++||+|+.....+.||+|++|||++++++||+|||.+|+..|+|+.++++|++
T Consensus 106 ~l~~~gi~v~~~~~~~~~H~K~~viD~~~~~~GS~N~t~~~~~~n~E~~~~i~~~~ 161 (196)
T 4ggj_A 106 LLRKAGIQVRHDQDLGYMHHKFAIVDKKVLITGSLNWTTQAIQNNRENVLIMEDTE 161 (196)
T ss_dssp HHHHTTCEEEECCSSSCCCCEEEEETTTEEEEESCCBCHHHHHHCCEEEEEECCHH
T ss_pred HHHhcCCCcccccccccccCcEEEEcceEEEecCccCChhhhcccceeEEEEECHH
Confidence 36789999999777899999999999999999999999999999999999999875
No 2
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=99.64 E-value=2.1e-16 Score=92.89 Aligned_cols=54 Identities=31% Similarity=0.380 Sum_probs=49.8
Q ss_pred ccccCceEEEcCCCCcceeeEEEEcCcEEEEeCccCCcccccccceeEEEEeCC
Q psy1966 3 KVQLNIPVRLTGPPYIMHHKFVLIDSSLVLQGSMNWTTQACSGNYENVVITGTP 56 (59)
Q Consensus 3 ~~~~Gi~v~~~~~~~~mH~K~~iiD~~~v~~GS~N~t~~s~~~N~E~~~ii~d~ 56 (59)
|.++|++|+...+.+.+|+|++|||++++++||+||+.+|+..|.|..+++.++
T Consensus 77 L~~~gv~v~~~~~~~~~H~K~~iiD~~~~~iGS~N~~~~~~~~n~E~~~~i~~~ 130 (155)
T 1byr_A 77 IANSGIPLRTDSNFPIQHDKVIIVDNVTVETGSFNFTKAAETKNSENAVVIWNM 130 (155)
T ss_dssp HHHTTCCEEEECSSSCCCCCEEEETTTEEEEESCCBSHHHHHTSCEEEEEEESC
T ss_pred HHHCCCeEEEcCCcccccceEEEECCCEEEEECCCCCccccccCcccEEEEcCc
Confidence 567899999866678999999999999999999999999999999999999884
No 3
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=99.55 E-value=1.8e-15 Score=103.78 Aligned_cols=54 Identities=19% Similarity=0.179 Sum_probs=48.3
Q ss_pred ccccC---ceEEEcCCCCcceeeEEEEcCcEEEEeCccCCcccccccceeEEEEeCCC
Q psy1966 3 KVQLN---IPVRLTGPPYIMHHKFVLIDSSLVLQGSMNWTTQACSGNYENVVITGTPG 57 (59)
Q Consensus 3 ~~~~G---i~v~~~~~~~~mH~K~~iiD~~~v~~GS~N~t~~s~~~N~E~~~ii~d~~ 57 (59)
|+++| |+++. +..+++|+|+++||++++++||+||+.+|+..|.|+.++++|++
T Consensus 345 l~~~G~i~V~i~~-~~~~~lHaK~~vvD~~~~~vGS~N~d~RS~~lN~E~~~~i~~~~ 401 (458)
T 3hsi_A 345 QIESGQLVVRLWR-DGDNTYHLKGVWVDDRYILLTGNNLNPRAWRLDAENGLLIYDPQ 401 (458)
T ss_dssp HHHHTSEEEEEEC-BTTBEECCCEEEETTTEEEEECCCCSHHHHHTCEEEEEEEECTT
T ss_pred HHhCCCeEEEEEe-cCCCceeEEEEEECCeEEEecCCCCCcchhhhCceeEEEEeCCc
Confidence 46788 55555 46899999999999999999999999999999999999999985
No 4
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=99.54 E-value=2.1e-15 Score=93.32 Aligned_cols=56 Identities=43% Similarity=0.775 Sum_probs=49.0
Q ss_pred ccccCceEEEcCCCCcceeeEEEEcC--------------------cEEEEeCccCCcccccccceeEEEEeCCCC
Q psy1966 3 KVQLNIPVRLTGPPYIMHHKFVLIDS--------------------SLVLQGSMNWTTQACSGNYENVVITGTPGI 58 (59)
Q Consensus 3 ~~~~Gi~v~~~~~~~~mH~K~~iiD~--------------------~~v~~GS~N~t~~s~~~N~E~~~ii~d~~l 58 (59)
+..+|++++.....+.||+|++|||+ +++++||+|||.+|+..|+|+++++.|+++
T Consensus 119 ~~~~~~~~~~~~~~~~~h~K~~viD~~~~~~~~~~~~H~K~~v~D~~~v~~GS~N~t~~s~~~N~E~~~vi~~~~~ 194 (220)
T 4gel_A 119 LAQLGVPVRVPITTNLMHNKFCIIDGFERVEEIRLLRKLKFMRPCYSIVISGSVNWTALGLGGNWENCIITADDKL 194 (220)
T ss_dssp HHHTTCCEEECCSSSCBCCCEEEESCHHHHHHHHHHTTCSCCCCCCCEEEEESCCBSHHHHHTSBEEEEEECCHHH
T ss_pred HHhcCCcEEeecccccccceeEEEcchhcccccccccceeccccccceEEecCccccccccccCceEEEEEECHHH
Confidence 45677788777788999999999985 789999999999999999999999988753
No 5
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=99.19 E-value=1.1e-11 Score=84.93 Aligned_cols=40 Identities=35% Similarity=0.427 Sum_probs=36.4
Q ss_pred CCcceeeEEEEcCcEEEEeCccCCcccccccceeEEEEeCCCC
Q psy1966 16 PYIMHHKFVLIDSSLVLQGSMNWTTQACSGNYENVVITGTPGI 58 (59)
Q Consensus 16 ~~~mH~K~~iiD~~~v~~GS~N~t~~s~~~N~E~~~ii~d~~l 58 (59)
.+.+|+|++|||++++++||+||+.+|+. |..++++||++
T Consensus 436 ~~~lHaK~~vvD~~~~~vGS~N~d~rS~~---E~~l~i~~~~~ 475 (506)
T 1v0w_A 436 PYAQHHKLVSVDSSTFYIGSKNLYPSWLQ---DFGYIVESPEA 475 (506)
T ss_dssp CCCBCCEEEEETTTEEEEESCCSSCCCSB---CEEEEEECHHH
T ss_pred cccceEEEEEECCcEEEEeCCCCCCcchh---hceeEecCHHH
Confidence 56899999999999999999999999983 99999998753
No 6
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=99.18 E-value=1.2e-11 Score=88.63 Aligned_cols=55 Identities=16% Similarity=0.278 Sum_probs=48.2
Q ss_pred cccccCceEEEcCCCCc-ceeeEEEEc----CcE---EEEeCccCCcccccccceeEEEEeCCC
Q psy1966 2 PKVQLNIPVRLTGPPYI-MHHKFVLID----SSL---VLQGSMNWTTQACSGNYENVVITGTPG 57 (59)
Q Consensus 2 ~~~~~Gi~v~~~~~~~~-mH~K~~iiD----~~~---v~~GS~N~t~~s~~~N~E~~~ii~d~~ 57 (59)
.|.++||+|+.. ..++ +|+|++||| +++ +.+||+||+.+|+..|.|..+++.+++
T Consensus 416 ~L~~aGV~V~~~-~~~~k~H~Ki~VID~re~~~i~~~a~iGS~N~d~rs~~~n~D~~l~i~~~~ 478 (687)
T 1xdp_A 416 RLTEAGVHVIFS-APGLKIHAKLFLISRKENGEVVRYAHIGTGNFNEKTARLYTDYSLLTADAR 478 (687)
T ss_dssp HHHHHTCEEEEC-CTTCEECCEEEEEEEEETTEEEEEEEEESSCSCTTGGGTEEEEEEEECCHH
T ss_pred HHHHCCCEEEEe-cCCccccceEEEEEeccCCeEEEEEEEeCCcCCcchhhhcceEEEEEeCHH
Confidence 467899999984 4555 999999999 555 999999999999999999999998864
No 7
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=98.36 E-value=1.3e-07 Score=67.82 Aligned_cols=39 Identities=18% Similarity=0.269 Sum_probs=36.4
Q ss_pred eeeEEEE---cCcEEEEeCccCCcccccccceeEEEEeCCCC
Q psy1966 20 HHKFVLI---DSSLVLQGSMNWTTQACSGNYENVVITGTPGI 58 (59)
Q Consensus 20 H~K~~ii---D~~~v~~GS~N~t~~s~~~N~E~~~ii~d~~l 58 (59)
|+|+... |+.++++||+||+.+|+..|.|..+.++||++
T Consensus 591 h~rI~~f~~~dd~~~~IGSAN~d~Rsl~~n~Ev~~~I~d~~~ 632 (687)
T 1xdp_A 591 HDRVYIFENGGDKKVYLSSADWMTRNIDYRIEVATPLLDPRL 632 (687)
T ss_dssp CCCEEEECGGGSCEEEEESCCBSHHHHHSEEEEEEECCSHHH
T ss_pred CCeEEEEcCCCCCEEEEEcCccchhhhhhheeeeEEecCHHH
Confidence 9999999 77899999999999999999999999999764
No 8
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=98.29 E-value=2.4e-07 Score=66.79 Aligned_cols=41 Identities=15% Similarity=0.249 Sum_probs=37.8
Q ss_pred cceeeEEEE---cCcEEEEeCccCCcccccccceeEEEEeCCCC
Q psy1966 18 IMHHKFVLI---DSSLVLQGSMNWTTQACSGNYENVVITGTPGI 58 (59)
Q Consensus 18 ~mH~K~~ii---D~~~v~~GS~N~t~~s~~~N~E~~~ii~d~~l 58 (59)
.-|.|+.+. |+.++++||+||+.+++..|.|..+.++||++
T Consensus 595 Leh~RIy~f~~gd~~~~~IGSAn~m~Rnl~~r~Ev~~~i~d~~~ 638 (705)
T 2o8r_A 595 LEHSRIWCFHNGGKEEVFISSADWMKRNLYNRIETACPVLDPTL 638 (705)
T ss_dssp EECCCEEEECGGGSCEEEEESCCBCHHHHHTSBCEEEECCSHHH
T ss_pred HhcCEEEEEECCCCcEEEEeccccchhhhhheeEEEEEEcCHHH
Confidence 349999999 88999999999999999999999999999865
No 9
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=98.20 E-value=5.5e-07 Score=64.99 Aligned_cols=56 Identities=16% Similarity=0.164 Sum_probs=48.5
Q ss_pred cccccCceEEEcCCCCcceeeEEEEcCc---------EEEEeCccCCcccccccceeEEEEeCCC
Q psy1966 2 PKVQLNIPVRLTGPPYIMHHKFVLIDSS---------LVLQGSMNWTTQACSGNYENVVITGTPG 57 (59)
Q Consensus 2 ~~~~~Gi~v~~~~~~~~mH~K~~iiD~~---------~v~~GS~N~t~~s~~~N~E~~~ii~d~~ 57 (59)
.|.++||+|.........|.|++|||++ ++..||.||...+.+...+..+++.+|+
T Consensus 421 ~Le~aGv~Vv~g~~~lk~H~Ki~lIdrr~~~~g~~~~y~~igtGN~n~~tariy~D~~l~t~~~~ 485 (705)
T 2o8r_A 421 RMRRSGIRIVYSMPGLKVHAKTALILYHTPAGERPQGIALLSTGNFNETTARIYSDTTLMTANTD 485 (705)
T ss_dssp HHHHHTCEEEECCTTCCBCCCEEEEEECCCSSSCCCEEEEEESSCSSCCCSSCEEEEEEEECCHH
T ss_pred HHHHCCCEEEEccCCCCceeEEEEEecccccCCceeEEEeccccceeeeEEEEEeeeeeeecChH
Confidence 4678999998865677899999999987 4778999999999999999999988764
No 10
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=98.03 E-value=2.4e-06 Score=58.41 Aligned_cols=42 Identities=17% Similarity=0.127 Sum_probs=31.3
Q ss_pred CCCcceeeEEEEcCcEEEEeCccCC-ccccc---ccceeEEEEeCC
Q psy1966 15 PPYIMHHKFVLIDSSLVLQGSMNWT-TQACS---GNYENVVITGTP 56 (59)
Q Consensus 15 ~~~~mH~K~~iiD~~~v~~GS~N~t-~~s~~---~N~E~~~ii~d~ 56 (59)
..+.+|.|++|||++++++||+|++ ...+. ...+..+.+..|
T Consensus 162 ~~~r~H~K~~ViD~~~a~~Gg~Nl~~d~y~~~~~~~~D~~v~i~G~ 207 (506)
T 1v0w_A 162 AFSWNHSKILVVDGQSALTGGINSWKDDYLDTTHPVSDVDLALTGP 207 (506)
T ss_dssp TTBCBCCCEEEETTTEEEEESCCCCHHHHTSSSSCCBEEEEEEESH
T ss_pred ccccceeeEEEECCcEEEeeccccCccccccCCCCceEEEEEEECH
Confidence 4468999999999999999999974 22222 336777777655
No 11
>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR TLA SRT MES; 1.9A {Bacillus firmus}
Probab=98.03 E-value=3.9e-06 Score=55.70 Aligned_cols=54 Identities=19% Similarity=0.209 Sum_probs=48.6
Q ss_pred ccccCceEEEcCCCCcceeeEEEEc---CcEEEEeCccCCcccccccceeEEEEeCC
Q psy1966 3 KVQLNIPVRLTGPPYIMHHKFVLID---SSLVLQGSMNWTTQACSGNYENVVITGTP 56 (59)
Q Consensus 3 ~~~~Gi~v~~~~~~~~mH~K~~iiD---~~~v~~GS~N~t~~s~~~N~E~~~ii~d~ 56 (59)
+++-|+++++..+..++|.|.-..- +..+++||.|||..+...|-|..+.++++
T Consensus 88 lL~cGvev~IiNrkRi~HaK~Yg~~~n~g~~LIV~SgNfT~pGmsQNvE~sllld~~ 144 (358)
T 2c1l_A 88 LLNRGVEVHIINRKRILHAKLYGTSNNLGESLVVSSGNFTGPGMSQNIEASLLLDNN 144 (358)
T ss_dssp HHHTTCEEEEEECSSCBCCEEEEEEETTEEEEEEESCCBSTTTTTTSBEEEEEECHH
T ss_pred HHhcCCceEEeeeeeecchhhhcccCCCceEEEEecCCccccccccceeEEEEEcCC
Confidence 6788999999889999999988864 68899999999999999999999998764
No 12
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=97.91 E-value=9.3e-07 Score=60.61 Aligned_cols=29 Identities=14% Similarity=0.152 Sum_probs=25.6
Q ss_pred CCcceeeEEEEcCcEEEEeCccCCcccccc
Q psy1966 16 PYIMHHKFVLIDSSLVLQGSMNWTTQACSG 45 (59)
Q Consensus 16 ~~~mH~K~~iiD~~~v~~GS~N~t~~s~~~ 45 (59)
.+.+|.|++|||++++++| +|++...|..
T Consensus 138 ~~r~H~Ki~viD~~v~~~G-~Ni~d~y~~~ 166 (458)
T 3hsi_A 138 FGVLHVKGFVFDDTVLYSG-ASINNVYLHQ 166 (458)
T ss_dssp GCCEECCEEEETTEEEEES-CCBSTTTTTC
T ss_pred cCcceeeEEEECCCEEEEe-eecCHHHhcC
Confidence 4789999999999998888 9999887765
No 13
>1q32_A TDP1P;, tyrosyl-DNA phosphodiesterase; DNA repair, replication, transcription, hydrolase, replication,transcription, hydrolase; 2.03A {Saccharomyces cerevisiae} SCOP: d.136.1.3 d.136.1.3
Probab=94.96 E-value=0.03 Score=39.53 Aligned_cols=41 Identities=29% Similarity=0.275 Sum_probs=31.8
Q ss_pred CCCCcceeeEEEE---------c---C----cEEEEeCccCCccccc------ccceeEEEEe
Q psy1966 14 GPPYIMHHKFVLI---------D---S----SLVLQGSMNWTTQACS------GNYENVVITG 54 (59)
Q Consensus 14 ~~~~~mH~K~~ii---------D---~----~~v~~GS~N~t~~s~~------~N~E~~~ii~ 54 (59)
+...++|.|+.+- | + .|++.||+|++..|-- +|+|..+++-
T Consensus 426 R~~a~PHiKty~r~~~~~~~~~~~~~~~~~i~W~lltSaNLSkaAWG~~~k~irnyElGVL~P 488 (544)
T 1q32_A 426 RGTTPAHSKFYMHCATNSAGPCDASQVFKELEWCLYTSANLSQTAWGTVSRKPRNYEAGVLYH 488 (544)
T ss_dssp TTTCCBCCEEEEEEEECC-------CTTSEESEEEEESCCBSHHHHCCSSSCCSSBEEEEEEE
T ss_pred CCCccCceEEEEeeccccccccccCCCccceeEEEEccccCCHHHhhhhhccccceEeEEEec
Confidence 3577889999872 2 1 6799999999988743 4999999883
No 14
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=93.72 E-value=0.0023 Score=42.33 Aligned_cols=33 Identities=12% Similarity=0.077 Sum_probs=26.3
Q ss_pred EEEEcCcEEEEeCccC-Cc---ccccccceeEEEEeCC
Q psy1966 23 FVLIDSSLVLQGSMNW-TT---QACSGNYENVVITGTP 56 (59)
Q Consensus 23 ~~iiD~~~v~~GS~N~-t~---~s~~~N~E~~~ii~d~ 56 (59)
.+|+|++.+++||.|. +. +||..|+| .++++++
T Consensus 192 l~ivD~~~alv~~~~~~~~~~~rS~~~~~e-aliv~~~ 228 (342)
T 3qph_A 192 IGMTDGKEVVTIQNATFDSIGPPSFKSTYP-EIIFSQY 228 (342)
T ss_dssp EEEETTTEEEEECSSSCCSSCCCEEEECCH-HHHHHHH
T ss_pred EEEEECCEEEEecccccccccccccccccc-EEEEECH
Confidence 4999999999999998 44 78888887 6555543
No 15
>1jy1_A TDP1, tyrosyl-DNA phosphodiesterase; PLD superfamily, hydrolase; 1.69A {Homo sapiens} SCOP: d.136.1.3 d.136.1.3 PDB: 1rff_A* 1mu9_A 1nop_A 1mu7_A* 1rfi_A* 1rg1_A* 1rg2_A* 1rgt_A* 1rgu_A* 1rh0_A* 1qzq_A
Probab=92.77 E-value=0.13 Score=35.41 Aligned_cols=40 Identities=23% Similarity=0.151 Sum_probs=30.6
Q ss_pred CCCCcceeeEEEE-cC-----cEEEEeCccCCcccc-----------cccceeEEEE
Q psy1966 14 GPPYIMHHKFVLI-DS-----SLVLQGSMNWTTQAC-----------SGNYENVVIT 53 (59)
Q Consensus 14 ~~~~~mH~K~~ii-D~-----~~v~~GS~N~t~~s~-----------~~N~E~~~ii 53 (59)
+...++|.|+.+- +. .++++||+|++..|- -+|+|..+++
T Consensus 343 R~~a~pHiKty~r~~~~~~~~~W~lltSaNLSkaAWG~~~k~~~~l~I~nyElGVl~ 399 (464)
T 1jy1_A 343 RSNAMPHIKTYMRPSPDFSKIAWFLVTSANLSKAAWGALEKNGTQLMIRSYELGVLF 399 (464)
T ss_dssp CTTSCBCCEEEEEECTTSSEEEEEEEESCCBSHHHHCEEETTTTEEEECSBEEEEEE
T ss_pred CCCcCCceeeEEecCCCCCeecEEEEccccCCHHHhCccccCCCceeEeeeeeeEEE
Confidence 3567889998774 21 469999999998763 2389999987
No 16
>1jy1_A TDP1, tyrosyl-DNA phosphodiesterase; PLD superfamily, hydrolase; 1.69A {Homo sapiens} SCOP: d.136.1.3 d.136.1.3 PDB: 1rff_A* 1mu9_A 1nop_A 1mu7_A* 1rfi_A* 1rg1_A* 1rg2_A* 1rgt_A* 1rgu_A* 1rh0_A* 1qzq_A
Probab=91.43 E-value=0.33 Score=33.44 Aligned_cols=40 Identities=13% Similarity=0.009 Sum_probs=32.6
Q ss_pred CCCcceeeEEEE---cCcEEEEeCccCCcccccccceeEEEEeC
Q psy1966 15 PPYIMHHKFVLI---DSSLVLQGSMNWTTQACSGNYENVVITGT 55 (59)
Q Consensus 15 ~~~~mH~K~~ii---D~~~v~~GS~N~t~~s~~~N~E~~~ii~d 55 (59)
..|.+|+|+||. |+-.|++-|+|++.. ...|...++.+.|
T Consensus 114 ~fGthHsKmmiL~y~~glRVVI~TANL~~~-DW~~~tQ~vW~sd 156 (464)
T 1jy1_A 114 AFGTHHTKMMLLLYEEGLRVVIHTSNLIHA-DWHQKTQGIWLSP 156 (464)
T ss_dssp TTCCBCCCEEEEEESSCEEEEEECCCBSGG-GGTSSBCEEEECC
T ss_pred cccccchhhheeecCCceEEEEeCCCCChh-HhccccceEEecc
Confidence 689999999996 577899999999987 4566777776654
No 17
>3sq7_A Tyrosyl-DNA phosphodiesterase 1; DNA binding, nuclear, hydrolase; 2.00A {Saccharomyces cerevisiae} PDB: 3sq5_A 3sq8_A* 3sq3_A
Probab=83.97 E-value=0.85 Score=31.70 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.1
Q ss_pred CCCcceeeEEEE---cC-cEEEEeCccCCc
Q psy1966 15 PPYIMHHKFVLI---DS-SLVLQGSMNWTT 40 (59)
Q Consensus 15 ~~~~mH~K~~ii---D~-~~v~~GS~N~t~ 40 (59)
..|.+|.|+||. |+ -.|++-|+|+..
T Consensus 100 ~fGthHsKmmlL~y~dg~~RVvI~TANl~~ 129 (470)
T 3sq7_A 100 PFASHHTKLIINFYDNGECKIFLPSNNFTS 129 (470)
T ss_dssp TTCCBCCCEEEEEETTSEEEEEEESSCBSH
T ss_pred CcCCccceeEEEEecCCCEEEEEecCCCCh
Confidence 679999999995 55 579999999974
No 18
>1q32_A TDP1P;, tyrosyl-DNA phosphodiesterase; DNA repair, replication, transcription, hydrolase, replication,transcription, hydrolase; 2.03A {Saccharomyces cerevisiae} SCOP: d.136.1.3 d.136.1.3
Probab=81.84 E-value=1.3 Score=31.24 Aligned_cols=37 Identities=16% Similarity=0.129 Sum_probs=29.2
Q ss_pred CCcceeeEEEE---cC-cEEEEeCccCCcccccccceeEEEE
Q psy1966 16 PYIMHHKFVLI---DS-SLVLQGSMNWTTQACSGNYENVVIT 53 (59)
Q Consensus 16 ~~~mH~K~~ii---D~-~~v~~GS~N~t~~s~~~N~E~~~ii 53 (59)
.|-+|.|+||. |+ -.|++-|+|+... ...|.+.++.+
T Consensus 178 fGthHSKmmlL~y~dg~lRVVI~TANLi~~-DW~~~tQ~vW~ 218 (544)
T 1q32_A 178 FASHHTKLIINFYDNGECKIFLPSNNFTSM-ETNLPQQVCWC 218 (544)
T ss_dssp TCCBCCCEEEEEESTTEEEEEEESSCBSHH-HHHSSBCEEEE
T ss_pred CCCCCceeEEEEecCCCEEEEEeCCCCChH-HhccccceEEE
Confidence 89999999996 55 7799999999987 35556666655
No 19
>3sq7_A Tyrosyl-DNA phosphodiesterase 1; DNA binding, nuclear, hydrolase; 2.00A {Saccharomyces cerevisiae} PDB: 3sq5_A 3sq8_A* 3sq3_A
Probab=77.42 E-value=1.9 Score=29.92 Aligned_cols=40 Identities=25% Similarity=0.226 Sum_probs=30.2
Q ss_pred CcceeeEEE-Ec---------------CcEEEEeCccCCcccc------cccceeEEEEeCC
Q psy1966 17 YIMHHKFVL-ID---------------SSLVLQGSMNWTTQAC------SGNYENVVITGTP 56 (59)
Q Consensus 17 ~~mH~K~~i-iD---------------~~~v~~GS~N~t~~s~------~~N~E~~~ii~d~ 56 (59)
..-|-|+.+ +. -.|++.||+|++..|- -+|+|..+++..+
T Consensus 352 a~PHiKtY~r~s~~~~~~~~~~~~~~~i~W~LlTSaNLSkaAWG~l~k~irsYElGVL~~p~ 413 (470)
T 3sq7_A 352 TPANSKFYMHCATNSAGPCDASQVFKELEWCLYTSANLSQTAWGTVSRKPRNYEAGVLYHSR 413 (470)
T ss_dssp CCBCCEEEEEEEC--------CCTTSEESEEEEESCCBSHHHHCCSSSCCSSBEEEEEEEGG
T ss_pred cCCceEEEEEecccccccccccCCCceeeEEEEecccCCHHHhhhhccCCcceeeeEEEccc
Confidence 444999998 21 1689999999997653 4699999988554
No 20
>3ktb_A Arsenical resistance operon trans-acting represso; alpha-beta-alpha sandwich, helix-turn-helix, structural GENO PSI-2; 2.10A {Bacteroides vulgatus}
Probab=60.93 E-value=5.3 Score=22.53 Aligned_cols=22 Identities=9% Similarity=0.090 Sum_probs=19.4
Q ss_pred CCCcceeeEEEEcCcEEEEeCc
Q psy1966 15 PPYIMHHKFVLIDSSLVLQGSM 36 (59)
Q Consensus 15 ~~~~mH~K~~iiD~~~v~~GS~ 36 (59)
..|.+=.-.++|||+++..|.+
T Consensus 70 ~~G~~~LP~~~VDGevv~~G~y 91 (106)
T 3ktb_A 70 KHGADALPITLVDGEIAVSQTY 91 (106)
T ss_dssp TTCGGGCSEEEETTEEEECSSC
T ss_pred HcCcccCCEEEECCEEEEeccC
Confidence 4788888999999999999985
No 21
>3kgk_A Arsenical resistance operon trans-acting represso; alpha+beta, chaperone, DNA-binding, RE transcription, transcription regulation; 1.40A {Escherichia coli} PDB: 3mwh_A
Probab=56.20 E-value=8.2 Score=21.89 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=18.4
Q ss_pred CCcceeeEEEEcCcEEEEeCc
Q psy1966 16 PYIMHHKFVLIDSSLVLQGSM 36 (59)
Q Consensus 16 ~~~mH~K~~iiD~~~v~~GS~ 36 (59)
.|.+=.-.++|||+++..|.+
T Consensus 68 ~G~~~LP~~~VDGevv~~G~y 88 (110)
T 3kgk_A 68 SGAEGLPLLLLDGETVMAGRY 88 (110)
T ss_dssp HCGGGCCEEEETTEEEEESSC
T ss_pred cCcccCCEEEECCEEEEeccC
Confidence 577778899999999999985
No 22
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}
Probab=35.95 E-value=23 Score=22.46 Aligned_cols=40 Identities=15% Similarity=0.173 Sum_probs=25.5
Q ss_pred CCCcceeeEEEEcCcEEEEeCccCCcccccccceeEEEEeC
Q psy1966 15 PPYIMHHKFVLIDSSLVLQGSMNWTTQACSGNYENVVITGT 55 (59)
Q Consensus 15 ~~~~mH~K~~iiD~~~v~~GS~N~t~~s~~~N~E~~~ii~d 55 (59)
++|..+=||+ |||.|+.--+.-.+......|.++++.+.+
T Consensus 215 ~~G~y~YkFi-VDG~w~~d~~~~~~~~d~~G~~nn~~~v~~ 254 (294)
T 3nme_A 215 PEGQFEYKYI-IDGEWTHNEAEPFIGPNKDGHTNNYAKVVD 254 (294)
T ss_dssp CSEEEEEEEE-ETTEEECCTTSCEECSCTTSCCEEEEEECC
T ss_pred CCceEEEEEE-ECCEEeeCCCCCeeeECCCCCEeEEEEECC
Confidence 5677788876 599876533322222344668888888764
No 23
>3dt5_A Uncharacterized protein AF_0924; structural genomics, APC7732, unknown function, PSI-2, prote structure initiative; HET: MSE; 1.94A {Archaeoglobus fulgidus}
Probab=30.67 E-value=9 Score=21.83 Aligned_cols=21 Identities=52% Similarity=0.784 Sum_probs=15.1
Q ss_pred cceeeEEEEcCcEEEEeCccCCccc
Q psy1966 18 IMHHKFVLIDSSLVLQGSMNWTTQA 42 (59)
Q Consensus 18 ~mH~K~~iiD~~~v~~GS~N~t~~s 42 (59)
.||-||-- |. +.||+|||.-+
T Consensus 67 pmhfkfka-dk---iagsanwtfya 87 (135)
T 3dt5_A 67 PMHFKFKA-DK---IAGSANWTFYA 87 (135)
T ss_dssp CSCCGGGE-EC---CTTCSSEEESS
T ss_pred chheeeec-ch---hccccceeEEe
Confidence 57888654 33 67999999764
No 24
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A {Saccharomyces cerevisiae} SCOP: e.15.1.1
Probab=22.82 E-value=69 Score=20.29 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=20.6
Q ss_pred eeEEEEcCcEEEEeCccCCcccccc
Q psy1966 21 HKFVLIDSSLVLQGSMNWTTQACSG 45 (59)
Q Consensus 21 ~K~~iiD~~~v~~GS~N~t~~s~~~ 45 (59)
-++|+|||+.-=+|.+..-..++.+
T Consensus 130 y~~~~vDG~kekVGNFriEPPgLFr 154 (223)
T 1ois_A 130 YKFCELDGRREQVGNFKVEPPDLFR 154 (223)
T ss_dssp HHEEEETTEEEEEECCBCCCCEECC
T ss_pred cCEEEECCEEEeeCCcccCCCcccc
Confidence 3689999999999999887776654
No 25
>3ulb_A Target of rapamycin complex 2 subunit AVO1; PH domain, membrane localization, membrane protein; 1.90A {Saccharomyces cerevisiae} PDB: 3ulc_A
Probab=21.37 E-value=60 Score=18.67 Aligned_cols=15 Identities=20% Similarity=0.335 Sum_probs=12.8
Q ss_pred eeeEEEEcCcEEEEe
Q psy1966 20 HHKFVLIDSSLVLQG 34 (59)
Q Consensus 20 H~K~~iiD~~~v~~G 34 (59)
|.|.++|||..+-+.
T Consensus 28 ~ER~L~IDGdYIHIm 42 (121)
T 3ulb_A 28 HERTLAIDGDYIYIV 42 (121)
T ss_dssp EEEEEEEETTEEEEE
T ss_pred ccEEEEEcCceEEEe
Confidence 999999999887654
Done!