RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy1966
         (59 letters)



>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella
           typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
          Length = 155

 Score = 68.6 bits (168), Expect = 5e-17
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 8   IPVRLTGPPYIMHHKFVLIDSSLVLQGSMNWTTQACSGNYEN-VVITGTPGI 58
           IP+R      I H K +++D+  V  GS N+T  A + N EN VVI   P +
Sbjct: 82  IPLRTDSNFPIQHDKVIIVDNVTVETGSFNFTKAAETKNSENAVVIWNMPKL 133


>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR
           TLA SRT MES; 1.9A {Bacillus firmus}
          Length = 358

 Score = 34.8 bits (79), Expect = 5e-04
 Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 4/55 (7%)

Query: 5   QLNIPVRLTGPPYIMHHK---FVLIDSSLVLQGSMNWTTQACSGNYE-NVVITGT 55
              + V +     I+H K           ++  S N+T    S N E ++++   
Sbjct: 90  NRGVEVHIINRKRILHAKLYGTSNNLGESLVVSSGNFTGPGMSQNIEASLLLDNN 144


>1v0w_A Phospholipase D; hydrolase, substrate SOAK,
           dibutyrylphosphatidylcholine, DIC4PC; 1.35A
           {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A
           1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A*
           2ze9_A*
          Length = 506

 Score = 34.3 bits (78), Expect = 8e-04
 Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 4/46 (8%)

Query: 8   IPVRLTGPPYIMHHKFVLIDSSLVLQGSMNWTTQACSGNYE-NVVI 52
                 G PY  HHK V +DSS    GS N      S   +   ++
Sbjct: 428 NGKWADGHPYAQHHKLVSVDSSTFYIGSKNLYP---SWLQDFGYIV 470



 Score = 25.8 bits (56), Expect = 0.68
 Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 2/37 (5%)

Query: 3   KVQLNIPVRLTG--PPYIMHHKFVLIDSSLVLQGSMN 37
            + LN+    T        H K +++D    L G +N
Sbjct: 148 NITLNVASMTTSKTAFSWNHSKILVVDGQSALTGGIN 184


>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine
           O-phosphatidyltransferase, structura genomics, PSI-2;
           HET: MSE; 2.20A {Haemophilus influenzae}
          Length = 458

 Score = 31.9 bits (72), Expect = 0.005
 Identities = 10/38 (26%), Positives = 16/38 (42%)

Query: 19  MHHKFVLIDSSLVLQGSMNWTTQACSGNYENVVITGTP 56
            H K V +D   +L    N   +A   + EN ++   P
Sbjct: 363 YHLKGVWVDDRYILLTGNNLNPRAWRLDAENGLLIYDP 400



 Score = 26.1 bits (57), Expect = 0.68
 Identities = 6/34 (17%), Positives = 16/34 (47%)

Query: 2   PKVQLNIPVRLTGPPYIMHHKFVLIDSSLVLQGS 35
           P +   +P+       ++H K  + D +++  G+
Sbjct: 124 PNMFFGVPINTREVFGVLHVKGFVFDDTVLYSGA 157


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.2 bits (57), Expect = 0.62
 Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 15/61 (24%)

Query: 5   QLNIPVRLT--G------PPYIMHHKFVLIDSSLVLQGSMNWTTQACSGNYENVVITGTP 56
            + IPV  T  G         I      ++D   +++  + W T        +++  G P
Sbjct: 454 DIQIPVYDTFDGSDLRVLSGSISE---RIVD--CIIRLPVKWET-TTQFKATHILDFG-P 506

Query: 57  G 57
           G
Sbjct: 507 G 507



 Score = 23.9 bits (51), Expect = 3.5
 Identities = 4/8 (50%), Positives = 7/8 (87%)

Query: 49  NVVITGTP 56
           N+V++G P
Sbjct: 376 NLVVSGPP 383


>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
          initiative, PSI, SGPP structural genomics of pathogenic
          protozoa consortium; HET: ADP; 1.70A {Leishmania major}
          SCOP: c.37.1.1
          Length = 184

 Score = 24.3 bits (52), Expect = 2.2
 Identities = 7/9 (77%), Positives = 9/9 (100%)

Query: 49 NVVITGTPG 57
          N++ITGTPG
Sbjct: 12 NILITGTPG 20


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.136    0.425 

Gapped
Lambda     K      H
   0.267   0.0561    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 921,615
Number of extensions: 36473
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 9
Length of query: 59
Length of database: 6,701,793
Length adjustment: 30
Effective length of query: 29
Effective length of database: 5,864,163
Effective search space: 170060727
Effective search space used: 170060727
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.8 bits)