RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1966
         (59 letters)



>d1v0wa2 d.136.1.2 (A:264-514) Phospholipase D {Streptomyces sp.
           [TaxId: 1931]}
          Length = 246

 Score = 38.3 bits (88), Expect = 1e-05
 Identities = 13/47 (27%), Positives = 17/47 (36%), Gaps = 4/47 (8%)

Query: 9   PVRLTGPPYIMHHKFVLIDSSLVLQGSMNWTTQACSGNYE-NVVITG 54
                G PY  HHK V +DSS    GS N          +   ++  
Sbjct: 169 GKWADGHPYAQHHKLVSVDSSTFYIGSKNLYPSW---LQDFGYIVES 212


>d1byra_ d.136.1.1 (A:) Nuclease Nuc {Salmonella typhimurium [TaxId:
           90371]}
          Length = 152

 Score = 36.5 bits (83), Expect = 3e-05
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 15  PPYIMHHKFVLIDSSLVLQGSMNWTTQACSGNYEN-VVITGTPGI 58
              I H K +++D+  V  GS N+T  A + N EN VVI   P +
Sbjct: 88  NFPIQHDKVIIVDNVTVETGSFNFTKAAETKNSENAVVIWNMPKL 132


>d1v0wa1 d.136.1.2 (A:6-263) Phospholipase D {Streptomyces sp.
           [TaxId: 1931]}
          Length = 258

 Score = 29.7 bits (66), Expect = 0.012
 Identities = 6/36 (16%), Positives = 12/36 (33%)

Query: 4   VQLNIPVRLTGPPYIMHHKFVLIDSSLVLQGSMNWT 39
           + +             H K +++D    L G +N  
Sbjct: 149 LNVASMTTSKTAFSWNHSKILVVDGQSALTGGINSW 184


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.425 

Gapped
Lambda     K      H
   0.267   0.0489    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 225,936
Number of extensions: 7113
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 3
Length of query: 59
Length of database: 2,407,596
Length adjustment: 29
Effective length of query: 30
Effective length of database: 2,009,426
Effective search space: 60282780
Effective search space used: 60282780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.5 bits)