BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1968
(215 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4V516|CC135_DROME Coiled-coil domain-containing protein lobo OS=Drosophila
melanogaster GN=lobo PE=1 SV=1
Length = 897
Score = 113 bits (283), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 77/120 (64%), Gaps = 1/120 (0%)
Query: 93 YPETYLRNTDKEKLLIWYCENFRRQYSSRYPLRRPLVMALENECGVQKMVCTSINVTRFP 152
YP +Y + KE+LL+ Y ENFR+Q YP RR +V+AL NEC VQK VCT+I T F
Sbjct: 93 YPPSYYTLSPKERLLLLYAENFRKQLVLSYPKRRAMVLALPNECKVQKFVCTTIRPTAFI 152
Query: 153 LVEF-KSWSGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFELSTLLVSLLL 211
+ S A FV+D I YEPL P NLP RL SP T+ + G+ +E++TLLVS+L+
Sbjct: 153 YTQLISSVEEIAKFVADFIQYEPLQDPINLPNRLISPETLLRKRKGNSYEMATLLVSMLI 212
>sp|Q0V9S9|CC135_XENTR Coiled-coil domain-containing protein lobo homolog OS=Xenopus
tropicalis GN=ccdc135 PE=2 SV=1
Length = 856
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 74/116 (63%)
Query: 96 TYLRNTDKEKLLIWYCENFRRQYSSRYPLRRPLVMALENECGVQKMVCTSINVTRFPLVE 155
+Y N++KE++L+ +NF QY+ YP R+PL M NECGV+K VCT+++ T P +
Sbjct: 69 SYTTNSEKEEMLLGLADNFWHQYTHLYPDRKPLFMCPRNECGVEKFVCTTLHPTLLPYSD 128
Query: 156 FKSWSGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFELSTLLVSLLL 211
W A FVS+++ EPL+ P LP L S ++V QSG+CF+ S LL SLLL
Sbjct: 129 LYDWDQSAKFVSEYLTMEPLNPPLELPRSLFSSTSVLQKQSGNCFDFSVLLCSLLL 184
>sp|Q95JL1|CC135_MACFA Coiled-coil domain-containing protein lobo homolog OS=Macaca
fascicularis GN=CCDC135 PE=2 SV=3
Length = 874
Score = 97.1 bits (240), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 86/175 (49%), Gaps = 3/175 (1%)
Query: 37 RRPPIVQPIVPIKYETLDRDKVLNAYRTTLGRLGLVWTPPGGLSPKSVCAVPAASDYPET 96
R +++P+ K ET ++L R +L + P P S P +
Sbjct: 27 RTEKMMRPVEVRKEETTLTQEML---RDLEKKLSEIQIPISAELPAFTKDTIDISKLPVS 83
Query: 97 YLRNTDKEKLLIWYCENFRRQYSSRYPLRRPLVMALENECGVQKMVCTSINVTRFPLVEF 156
Y NT KE+ L+ +NF RQYS P R PL + NEC V K V T++ T P E
Sbjct: 84 YKTNTPKEEHLLQVADNFSRQYSHLCPDRVPLFLHPLNECEVPKFVSTTLRPTLMPYPEL 143
Query: 157 KSWSGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFELSTLLVSLLL 211
+W CA FVSD + PL P P L S +TV N Q G+CF+ ST+L S+L+
Sbjct: 144 YNWDSCAQFVSDFLTMVPLPDPLKPPSHLYSSTTVLNYQKGNCFDFSTMLCSMLI 198
>sp|Q8IY82|CC135_HUMAN Coiled-coil domain-containing protein lobo homolog OS=Homo sapiens
GN=CCDC135 PE=2 SV=3
Length = 874
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 67/121 (55%)
Query: 91 SDYPETYLRNTDKEKLLIWYCENFRRQYSSRYPLRRPLVMALENECGVQKMVCTSINVTR 150
S P +Y NT KE+ L+ +NF RQYS P R PL + NEC V K V T++ T
Sbjct: 78 SKLPISYKTNTPKEEHLLQVADNFSRQYSHLCPDRVPLFLHPLNECEVPKFVSTTLRPTL 137
Query: 151 FPLVEFKSWSGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFELSTLLVSLL 210
P E +W CA FVSD + PL P P L S +TV Q G+CF+ STLL S+L
Sbjct: 138 MPYPELYNWDSCAQFVSDFLTMVPLPDPLKPPSHLYSSTTVLKYQKGNCFDFSTLLCSML 197
Query: 211 L 211
+
Sbjct: 198 I 198
>sp|Q6V3W6|CC135_MOUSE Coiled-coil domain-containing protein lobo homolog OS=Mus musculus
GN=Ccdc135 PE=1 SV=4
Length = 876
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 66/118 (55%)
Query: 94 PETYLRNTDKEKLLIWYCENFRRQYSSRYPLRRPLVMALENECGVQKMVCTSINVTRFPL 153
P +Y N+ KE+ L+ +NF RQYS P R PL + NEC V K V T++ T P
Sbjct: 82 PPSYTTNSLKEEHLLLVADNFSRQYSHLCPDRVPLFLHPLNECNVPKFVSTTLRPTLMPY 141
Query: 154 VEFKSWSGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFELSTLLVSLLL 211
E +W CA FVSD + PL P P L S +TV Q G+CF+ STLL S+L+
Sbjct: 142 PELYNWDSCAQFVSDFLTMVPLVDPLKPPTHLYSSTTVLKCQKGNCFDFSTLLCSMLI 199
>sp|A8JAM0|CC135_CHLRE Coiled-coil domain-containing protein lobo homolog (Fragment)
OS=Chlamydomonas reinhardtii GN=FAP50 PE=2 SV=1
Length = 1159
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 72/125 (57%)
Query: 87 VPAASDYPETYLRNTDKEKLLIWYCENFRRQYSSRYPLRRPLVMALENECGVQKMVCTSI 146
+ A P ++ +++ E ++ Y ++F+R + YP RRPL + NECGV K VCTS+
Sbjct: 612 INTAGKMPRSFTQHSAHEARVLQYVQDFQRIFEELYPYRRPLYLTPRNECGVPKFVCTSL 671
Query: 147 NVTRFPLVEFKSWSGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFELSTLL 206
++ E G + FV+D + YEPL+ P + P L SP + ++G F+++T+L
Sbjct: 672 RPSQLVYTELYDLDGASQFVADFLSYEPLEDPLHPPDTLPSPMSALEWRAGDSFDMATVL 731
Query: 207 VSLLL 211
S+LL
Sbjct: 732 ASMLL 736
>sp|G2HE57|CC135_PANTR Coiled-coil domain-containing protein lobo homolog OS=Pan
troglodytes GN=CCDC135 PE=2 SV=1
Length = 874
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 66/121 (54%)
Query: 91 SDYPETYLRNTDKEKLLIWYCENFRRQYSSRYPLRRPLVMALENECGVQKMVCTSINVTR 150
S P +Y NT KE+ L+ +NF QYS P R PL + NEC V K V T++ T
Sbjct: 78 SKLPVSYKTNTPKEEHLLQVADNFSCQYSHLCPDRVPLFLHPLNECEVPKFVSTTLRPTL 137
Query: 151 FPLVEFKSWSGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFELSTLLVSLL 210
P E +W CA FVSD + PL P P L S +TV Q G+CF+ STLL S+L
Sbjct: 138 MPYPELYNWDSCAQFVSDFLTMVPLPDPLKPPSHLYSSTTVLKYQKGNCFDFSTLLCSML 197
Query: 211 L 211
+
Sbjct: 198 I 198
>sp|Q2T9M4|CC135_BOVIN Coiled-coil domain-containing protein lobo homolog OS=Bos taurus
GN=CCDC135 PE=2 SV=1
Length = 872
Score = 80.9 bits (198), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 68/122 (55%)
Query: 90 ASDYPETYLRNTDKEKLLIWYCENFRRQYSSRYPLRRPLVMALENECGVQKMVCTSINVT 149
S P +Y NT KE+ L+ +NF RQYS P R PL + NEC V K V T+I T
Sbjct: 75 TSKLPLSYQSNTLKEEHLLQVADNFSRQYSHLCPDRVPLFLHPLNECEVPKFVSTTIRPT 134
Query: 150 RFPLVEFKSWSGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFELSTLLVSL 209
P E +W CA F+SD + PL P P+ L S +TV Q G+CF+ STLL S+
Sbjct: 135 LMPYPELYNWDTCAQFISDFLSMVPLPDPLKPPLYLYSSTTVLKYQKGNCFDFSTLLCSM 194
Query: 210 LL 211
L+
Sbjct: 195 LI 196
>sp|Q7NQF8|RS3_CHRVO 30S ribosomal protein S3 OS=Chromobacterium violaceum (strain ATCC
12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 /
NCTC 9757) GN=rpsC PE=3 SV=1
Length = 233
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 46 VPIKYETLDRDKVLNAYRTTLGRLGL-VWTPPGGLSPKSVCAVPAASDYPETYLRN 100
VP+ D D + +TT G +G+ VW G L P V A PAA PE +R
Sbjct: 173 VPLHTLRADVDYATSEAKTTYGIIGIKVWVYKGELKPGQVQATPAA---PEKKMRK 225
>sp|Q9H7F0|AT133_HUMAN Probable cation-transporting ATPase 13A3 OS=Homo sapiens GN=ATP13A3
PE=1 SV=4
Length = 1226
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 69 LGLVWTPPGGLSPKSVCAVPAASDYPETYLRNTDKEKLLIWYCENFRRQYSSRYPLRRPL 128
L L W P + K+ C A D LR TD+ K+ W+C R YP+ P
Sbjct: 45 LLLYWMPEWRV--KATCVRAAIKDCEVVLLRTTDEFKM--WFCAKIRVLSLETYPVSSPK 100
Query: 129 VMA 131
M+
Sbjct: 101 SMS 103
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,861,869
Number of Sequences: 539616
Number of extensions: 3757490
Number of successful extensions: 11878
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 11858
Number of HSP's gapped (non-prelim): 20
length of query: 215
length of database: 191,569,459
effective HSP length: 113
effective length of query: 102
effective length of database: 130,592,851
effective search space: 13320470802
effective search space used: 13320470802
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)