Query psy1968
Match_columns 215
No_of_seqs 86 out of 104
Neff 3.6
Searched_HMMs 46136
Date Fri Aug 16 20:50:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1968.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1968hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01841 Transglut_core: Trans 96.6 0.00081 1.8E-08 49.6 0.8 51 157-211 16-66 (113)
2 KOG3639|consensus 96.3 0.01 2.2E-07 61.2 6.9 111 99-213 877-998 (1239)
3 PF04473 DUF553: Transglutamin 94.0 0.036 7.8E-07 46.5 2.2 31 183-213 62-92 (153)
4 smart00460 TGc Transglutaminas 87.8 0.26 5.5E-06 33.5 1.0 21 191-211 1-21 (68)
5 COG1305 Transglutaminase-like 87.7 0.59 1.3E-05 39.3 3.3 31 182-212 180-210 (319)
6 PF06035 Peptidase_C93: Bacter 76.6 1.3 2.8E-05 38.2 1.2 61 147-211 32-92 (170)
7 PF13214 DUF4022: Protein of u 64.9 3.8 8.3E-05 31.4 1.4 21 193-213 43-63 (83)
8 cd01240 PH_beta-ARK Beta adren 38.4 19 0.00042 29.6 1.5 19 110-128 16-34 (116)
9 PF12242 Eno-Rase_NADH_b: NAD( 36.0 9.7 0.00021 29.4 -0.5 36 138-184 6-41 (78)
10 PF00797 Acetyltransf_2: N-ace 34.3 20 0.00043 30.3 1.1 20 193-212 43-62 (240)
11 PF06991 Prp19_bind: Splicing 20.2 83 0.0018 29.0 2.5 19 33-51 28-46 (276)
No 1
>PF01841 Transglut_core: Transglutaminase-like superfamily; InterPro: IPR002931 This domain is found in many proteins known to have transglutaminase activity, i.e. which cross-link proteins through an acyl-transfer reaction between the gamma-carboxamide group of peptide-bound glutamine and the epsilon-amino group of peptide-bound lysine, resulting in a epsilon-(gamma-glutamyl)lysine isopeptide bond. Tranglutaminases have been found in a diverse range of species, from bacteria through to mammals. The enzymes require calcium binding and their activity leads to post-translational modification of proteins through acyl-transfer reactions, involving peptidyl glutamine residues as acyl donors and a variety of primary amines as acyl acceptors, with the generation of proteinase resistant isopeptide bonds []. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterised transglutaminase, the human blood clotting factor XIIIa' []. On the basis of the experimentally demonstrated activity of the Methanobacterium phage psiM2 pseudomurein endoisopeptidase [], it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease []. A subunit of plasma Factor XIII revealed that each Factor XIIIA subunit is composed of four domains (termed N-terminal beta-sandwich, core domain (containing the catalytic and the regulatory sites), and C-terminal beta-barrels 1 and 2) and that two monomers assemble into the native dimer through the surfaces in domains 1 and 2, in opposite orientation. This organisation in four domains is highly conserved during evolution among transglutaminase isoforms [].; PDB: 2F4M_A 2F4O_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B ....
Probab=96.57 E-value=0.00081 Score=49.58 Aligned_cols=51 Identities=25% Similarity=0.417 Sum_probs=38.4
Q ss_pred cChhhHHHHhhcccccccCCCCCCCCccccChhhHhhcccCCcchhhHHHHHhhh
Q psy1968 157 KSWSGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFELSTLLVSLLL 211 (215)
Q Consensus 157 y~~~~cA~FVSd~L~YEpLe~P~~~P~~l~SPtt~L~~QkGnCFD~S~LLCSLLl 211 (215)
.-...+.+||.+.+.|. .......-.+|..+|..++|+|.|+|+|+++||-
T Consensus 16 ~~~~~i~~~v~~~~~y~----~~~~~~~~~~~~~~l~~~~G~C~~~a~l~~allr 66 (113)
T PF01841_consen 16 EKAKAIYDWVRSNIRYD----DPNYSPGPRDASEVLRSGRGDCEDYASLFVALLR 66 (113)
T ss_dssp CCCCCCCCCCCCCCCEC-----TCCCCCCTTHHHHHHCEEESHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcEEe----CCCCCCCCCCHHHHHHcCCCccHHHHHHHHHHHh
Confidence 44455667888999999 2222333345999999999999999999999973
No 2
>KOG3639|consensus
Probab=96.28 E-value=0.01 Score=61.18 Aligned_cols=111 Identities=17% Similarity=0.149 Sum_probs=85.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhCCCC--CCcceecCcccCCcceeeeeeeccCCCCcccc---------ChhhHHHHhh
Q psy1968 99 RNTDKEKLLIWYCENFRRQYSSRYPLR--RPLVMALENECGVQKMVCTSINVTRFPLVEFK---------SWSGCASFVS 167 (215)
Q Consensus 99 ~nS~KE~llL~yAenF~rQF~~lyPdR--RpL~L~p~NECGV~KFVCTTIRPT~Lpy~ELy---------~~~~cA~FVS 167 (215)
..|-....+|+.++||..+-..+||.| +|+++-- +|-.-|+--|+||..-| .+|- +..-+||++|
T Consensus 877 feS~EdeKlLea~ekfeaeca~kFPkR~cl~lViDi---nghstf~TRYLkPiaPP-Qelln~~annlqanaeLiaR~aa 952 (1239)
T KOG3639|consen 877 FESFEDEKLLEACEKFEAECAEKFPKRICLPLVIDI---NGHSTFCTRYLKPIAPP-QELLNENANNLQANAELIARLAA 952 (1239)
T ss_pred cccccchHHHHHHHHHHHHHHHhCccccccceEEec---CCceeEeehhccCCCCh-HHHHhhCccchhhchHHHHHHHH
Confidence 345566789999999999999999999 7887743 56666666699999988 4543 4455677777
Q ss_pred cccccccCCCCCCCCccccChhhHhhcccCCcchhhHHHHHhhhhc
Q psy1968 168 DHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFELSTLLVSLLLVR 213 (215)
Q Consensus 168 d~L~YEpLe~P~~~P~~l~SPtt~L~~QkGnCFD~S~LLCSLLlGa 213 (215)
-...--+-.+-+.--+.|.....++.--.|+=.+||||||-.++-+
T Consensus 953 ~Ipf~~drVdfgg~cDiWgnsdQfldiaaGdeEEhatLLc~~fLhf 998 (1239)
T KOG3639|consen 953 KIPFGMDRVDFGGHCDIWGNSDQFLDIAAGDEEEHATLLCCWFLHF 998 (1239)
T ss_pred hcccCCCccccCccccccccHHHHHHHhcCchHHhHHHHHHHHHHh
Confidence 3332223355566678899999999999999999999999987754
No 3
>PF04473 DUF553: Transglutaminase-like domain; InterPro: IPR007562 This entry represents a transglutaminase-like domain found in a family of uncharacterised archaeal proteins that had previously been called DUF553 and UPF0252.
Probab=94.00 E-value=0.036 Score=46.46 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=28.0
Q ss_pred ccccChhhHhhcccCCcchhhHHHHHhhhhc
Q psy1968 183 VRLRSPSTVFNGQSGHCFELSTLLVSLLLVR 213 (215)
Q Consensus 183 ~~l~SPtt~L~~QkGnCFD~S~LLCSLLlGa 213 (215)
..+.||..++..++|.|-|+|+|..+||+.+
T Consensus 62 ~~i~tp~etl~~k~GiC~DYA~Lta~lLl~~ 92 (153)
T PF04473_consen 62 TYIQTPYETLKYKKGICGDYAILTAALLLNM 92 (153)
T ss_pred ccccCHHHHHHcCCeeeHHHHHHHHHHHHHC
Confidence 3567999999999999999999999999863
No 4
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=87.82 E-value=0.26 Score=33.51 Aligned_cols=21 Identities=33% Similarity=0.624 Sum_probs=18.7
Q ss_pred HhhcccCCcchhhHHHHHhhh
Q psy1968 191 VFNGQSGHCFELSTLLVSLLL 211 (215)
Q Consensus 191 ~L~~QkGnCFD~S~LLCSLLl 211 (215)
+|+.+.|+|.++|.+++++|-
T Consensus 1 ~~~~~~G~C~~~a~l~~~llr 21 (68)
T smart00460 1 LLKTKYGTCGEFAALFVALLR 21 (68)
T ss_pred CCcccceeeHHHHHHHHHHHH
Confidence 467899999999999999984
No 5
>COG1305 Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]
Probab=87.72 E-value=0.59 Score=39.32 Aligned_cols=31 Identities=29% Similarity=0.349 Sum_probs=27.3
Q ss_pred CccccChhhHhhcccCCcchhhHHHHHhhhh
Q psy1968 182 PVRLRSPSTVFNGQSGHCFELSTLLVSLLLV 212 (215)
Q Consensus 182 P~~l~SPtt~L~~QkGnCFD~S~LLCSLLlG 212 (215)
-....++..+|..++|+|-|+|.|+.+||=.
T Consensus 180 ~~~~~~~~~~l~~~~G~C~d~a~l~val~Ra 210 (319)
T COG1305 180 TPVTGSASDALRLGRGVCRDFAHLLVALLRA 210 (319)
T ss_pred CCCCCCHHHHHHhCCcccccHHHHHHHHHHH
Confidence 4577889999999999999999999999843
No 6
>PF06035 Peptidase_C93: Bacterial transglutaminase-like cysteine proteinase BTLCP; InterPro: IPR010319 Structural analysis predicts that this family of proteins are bacterial transglutaminase-like cysteine peptidases (BTLCPs) with an invariant Cys-His-Asp catalytic triad and an N-terminal signal sequence. They are predicted to possess the papain-like cysteine proteinase fold and catalyse post-translational protein modification through transamidase, acetylase or hydrolase activity. Inspection of neighbouring genes suggests a link between this predicted activity and a type-I secretion system resembling ATP-binding cassette exporters of toxins and proteases involved in bacterial pathogenicity [].; PDB: 4FGQ_B 4FGP_B 4FGO_A.
Probab=76.64 E-value=1.3 Score=38.19 Aligned_cols=61 Identities=13% Similarity=0.161 Sum_probs=28.2
Q ss_pred eccCCCCccccChhhHHHHhhcccccccCCCCCCCCccccChhhHhhcccCCcchhhHHHHHhhh
Q psy1968 147 NVTRFPLVEFKSWSGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFELSTLLVSLLL 211 (215)
Q Consensus 147 RPT~Lpy~ELy~~~~cA~FVSd~L~YEpLe~P~~~P~~l~SPtt~L~~QkGnCFD~S~LLCSLLl 211 (215)
.|+.+.-.+.......-+||-.-|.|..=..--+..++|.+| ....|||.|+|++==-.|+
T Consensus 32 ~~~~lt~~~~~~L~~VN~~vN~~I~~~~D~~~~g~~DyWa~P----~~g~GDCEDyai~K~~~L~ 92 (170)
T PF06035_consen 32 APVKLTADRWEQLERVNRFVNRAIRYVSDQDLYGQEDYWATP----ARGAGDCEDYAIAKRFALI 92 (170)
T ss_dssp -----------HHHHHHHHHHT-SEE---TTTSS--SS---H----HHTEE-HHHHHHHHHHHHH
T ss_pred cccccchhHHHHHHHHHHHHHccCCccChhHhcCCccCCCCC----CCCcCCcHhHHHHHHHHHH
Confidence 455555444455666667887777666554456677999999 3579999999987444443
No 7
>PF13214 DUF4022: Protein of unknown function (DUF4022)
Probab=64.90 E-value=3.8 Score=31.42 Aligned_cols=21 Identities=29% Similarity=0.271 Sum_probs=19.8
Q ss_pred hcccCCcchhhHHHHHhhhhc
Q psy1968 193 NGQSGHCFELSTLLVSLLLVR 213 (215)
Q Consensus 193 ~~QkGnCFD~S~LLCSLLlGa 213 (215)
.|+|.|-.-++-|+||||+|.
T Consensus 43 gwkksngiky~cl~~slllgt 63 (83)
T PF13214_consen 43 GWKKSNGIKYFCLLLSLLLGT 63 (83)
T ss_pred ccccCCCeeeHHHHHHHHHhH
Confidence 699999999999999999996
No 8
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=38.38 E-value=19 Score=29.63 Aligned_cols=19 Identities=26% Similarity=0.565 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhCCCCCCc
Q psy1968 110 YCENFRRQYSSRYPLRRPL 128 (215)
Q Consensus 110 yAenF~rQF~~lyPdRRpL 128 (215)
++.+|++.|..+||.|--+
T Consensus 16 Fls~WQ~Ry~~LfPNRLE~ 34 (116)
T cd01240 16 FLSQWQTRYFKLYPNRLEL 34 (116)
T ss_pred HHHHHHHHHheeCcceeee
Confidence 5779999999999999776
No 9
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=35.95 E-value=9.7 Score=29.38 Aligned_cols=36 Identities=28% Similarity=0.529 Sum_probs=23.8
Q ss_pred CcceeeeeeeccCCCCccccChhhHHHHhhcccccccCCCCCCCCcc
Q psy1968 138 VQKMVCTSINVTRFPLVEFKSWSGCASFVSDHIVYEPLDHPTNLPVR 184 (215)
Q Consensus 138 V~KFVCTTIRPT~Lpy~ELy~~~~cA~FVSd~L~YEpLe~P~~~P~~ 184 (215)
++-|||+|-.| .||++-|.+-+.|-....+..-|+.
T Consensus 6 irg~i~~taHP-----------~GC~~~V~~qI~yvk~~~~~~GpK~ 41 (78)
T PF12242_consen 6 IRGFICTTAHP-----------VGCARNVENQIEYVKSQGKINGPKK 41 (78)
T ss_dssp EETTEES---H-----------HHHHHHHHHHHHHHHHC---TS-SE
T ss_pred ccceeECCCCc-----------HHHHHHHHHHHHHHHhcCCCCCCce
Confidence 56788988765 6999999999999998666655543
No 10
>PF00797 Acetyltransf_2: N-acetyltransferase; InterPro: IPR001447 Arylamine N-acetyltransferase (NAT) is a cytosolic enzyme of approximately 30 kDa. It facilitates the transfer of an acetyl group from acetyl coenzyme A on to a wide range of arylamine, N-hydroxyarylamines and hydrazines. Acetylation of these compounds generally results in inactivation. NAT is found in many species from Mycobacteria (Mycobacterium tuberculosis, Mycobacterium smegmatis etc) to Homo sapiens (Human). It was the first enzyme to be observed to have polymorphic activity amongst human individuals. NAT is responsible for the inactivation of Isoniazid (a drug used to treat tuberculosis) in humans. The NAT protein has also been shown to be involved in the breakdown of folic acid. NAT catalyses the reaction: Acetyl-coA + arylamine = coA + N-acetylarylamine NAT is the target of a common genetic polymorphism of clinical relevance in humans. The N-acetylation polymorphism is determined by low or high NAT activity in liver. NAT has been implicated in the action and toxicity of amine-containing drugs, and in the susceptibility to cancer and systematic lupus erythematosus. Two highly similar human genes for NAT, termed NAT1 and NAT2, encode genetically invariant and variant NAT proteins, respectively. ; GO: 0016407 acetyltransferase activity, 0008152 metabolic process; PDB: 1W6F_A 1W5R_A 1GX3_D 2PQT_A 2IJA_A 1W4T_A 2BSZ_B 3D9W_B 3LTW_A 3LNB_A ....
Probab=34.31 E-value=20 Score=30.35 Aligned_cols=20 Identities=45% Similarity=0.743 Sum_probs=15.1
Q ss_pred hcccCCcchhhHHHHHhhhh
Q psy1968 193 NGQSGHCFELSTLLVSLLLV 212 (215)
Q Consensus 193 ~~QkGnCFD~S~LLCSLLlG 212 (215)
+.+-|-||++..|++.+|..
T Consensus 43 ~~rGG~C~elN~lf~~lL~~ 62 (240)
T PF00797_consen 43 RGRGGYCFELNGLFYWLLRE 62 (240)
T ss_dssp TT--B-HHHHHHHHHHHHHH
T ss_pred cCCCeEhHHHHHHHHHHHHH
Confidence 67789999999999999964
No 11
>PF06991 Prp19_bind: Splicing factor, Prp19-binding domain; InterPro: IPR009730 This entry represents the C terminus (approximately 300 residues) of eukaryotic micro-fibrillar-associated protein 1, which is a component of elastin-associated microfibrils in the extracellular matrix [].
Probab=20.24 E-value=83 Score=28.98 Aligned_cols=19 Identities=26% Similarity=0.592 Sum_probs=13.5
Q ss_pred cccCCCCCCccccceeccc
Q psy1968 33 DENDRRPPIVQPIVPIKYE 51 (215)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~ 51 (215)
|+.+-.+||++||-+.|..
T Consensus 28 dSEde~~~~lKPVFV~K~~ 46 (276)
T PF06991_consen 28 DSEDEEEPLLKPVFVPKKQ 46 (276)
T ss_pred cccccccccccceeecccc
Confidence 3334445999999998873
Done!